Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LAMC1	3915	genome.wustl.edu	36	1	181352534	181352534	+	Silent	SNP	T	T	C			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	181352534	181352534	T	C	SNP	LAMC1	NM_002293	human	genbank	54_36p	+1	reviewed	silent	c.1437	p.P479	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_Grow_fac_recept,superfamily_SSF57196	HMMPfam_Laminin_B,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_LamB,superfamily_SSF57196	-	no_errors
ADAMTSL1	92949	genome.wustl.edu	36	9	18629381	18629381	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	18629381	18629381	G	T	SNP	ADAMTSL1	NM_001040272	human	genbank	54_36p	+1	validated	missense	c.806	p.G269V	1.000	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_PLAC,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
ITGA8	8516	genome.wustl.edu	36	10	15698530	15698530	+	Silent	SNP	G	G	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	15698530	15698530	G	A	SNP	ITGA8	NM_003638	human	genbank	54_36p	-1	provisional	silent	c.1434	p.V478	0.954	HMMSmart_Int_alpha,superfamily_SSF69318	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
FAM171A1	221061	genome.wustl.edu	36	10	15330670	15330670	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	15330670	15330670	G	A	SNP	FAM171A1	NM_001010924	human	genbank	54_36p	-1	validated	missense	c.728	p.A243V	0.765	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
ZNF213	7760	genome.wustl.edu	36	16	3128460	3128460	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	3128460	3128460	G	A	SNP	ZNF213	NM_004220	human	genbank	54_36p	+1	validated	missense	c.440	p.R147Q	0.001	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LCE1B	353132	genome.wustl.edu	36	1	151051691	151051691	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	151051691	151051691	G	T	SNP	LCE1B	NM_178349	human	genbank	54_36p	+1	validated	nonsense	c.145	p.G49*	0.991	NULL	NULL	-	no_errors
PCDHGA2	56113	genome.wustl.edu	36	5	140699526	140699526	+	Silent	SNP	C	C	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	140699526	140699526	C	T	SNP	PCDHGA2	NM_018915	human	genbank	54_36p	+1	reviewed	silent	c.804	p.D268	0.635	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
MKX	283078	genome.wustl.edu	36	10	28063581	28063581	+	Silent	SNP	G	G	C			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	28063581	28063581	G	C	SNP	MKX	NM_173576	human	genbank	54_36p	-1	validated	silent	c.648	p.P216	0.635	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
TET2	54790	genome.wustl.edu	36	4	106416718	106416718	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106416718	106416718	C	T	SNP	TET2	ENST00000265149	human	ensembl	54_36p	1	known	missense	c.2008	p.H670Y	1	NULL	NULL	-	NA
ZNF616	90317	genome.wustl.edu	36	19	57310035	57310035	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	57310035	57310035	G	T	SNP	ZNF616	NM_178523	human	genbank	54_36p	-1	validated	missense	c.2194	p.L732I	0.066	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
KIAA0240	23506	genome.wustl.edu	36	6	42940470	42940470	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	42940470	42940470	A	G	SNP	KIAA0240	NM_015349	human	genbank	54_36p	+1	validated	missense	c.2548	p.S850G	0.002	NULL	NULL	-	no_errors
IGSF21	84966	genome.wustl.edu	36	1	18534084	18534084	+	Silent	SNP	C	C	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	18534084	18534084	C	T	SNP	IGSF21	NM_032880	human	genbank	54_36p	+1	provisional	silent	c.417	p.N139	0.998	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
GDPD5	81544	genome.wustl.edu	36	11	74824213	74824213	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	74824213	74824213	C	T	SNP	GDPD5	NM_030792	human	genbank	54_36p	-1	validated	missense	c.1805	p.R602Q	0.235	NULL	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases	-	no_errors
OR5M5P	390166	genome.wustl.edu	36	11	56051119	56051119	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	56051119	56051119	C	A	SNP	OR5M5P	ENST00000341231	human	ensembl	54_36p	-1	known	missense	c.196	p.A66S	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
U2AF1	7307	genome.wustl.edu	36	21	43397525	43397525	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	43397525	43397525	G	A	SNP	U2AF1	NM_001025203	human	genbank	54_36p	-1	reviewed	missense	c.101	p.S34F	1.000	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928	-	no_errors
LOC439992	439992	genome.wustl.edu	36	10	86310725	86310725	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	86310725	86310725	G	C	SNP	LOC100131699	XM_001723921	human	genbank	54_36p	-1	model	missense	c.176	p.S59W	1.000	NULL	NULL	-	no_errors
NALCN	259232	genome.wustl.edu	36	13	100845643	100845643	+	Silent	SNP	G	G	A			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	100845643	100845643	G	A	SNP	NALCN	NM_052867	human	genbank	54_36p	-1	validated	silent	c.183	p.F61	1.000	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
MPL	4352	genome.wustl.edu	36	1	43590992	43590992	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	43590992	43590992	C	G	SNP	MPL	NM_005373	human	genbank	54_36p	+1	reviewed	missense	c.1870	p.H624D	0.996	NULL	PatternScan_HEMATOPO_REC_L_F1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind	-	no_errors
STK36	27148	genome.wustl.edu	36	2	219271843	219271843	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	A	A			A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	219271843	219271843	A	G	SNP	STK36	NM_015690	human	genbank	54_36p	+1	validated	missense	c.3332	p.Y1111C	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
LOC100130301	100130301	genome.wustl.edu	36	8	74316291	74316291	+	Silent	SNP	G	G	T			TCGA-AB-2996-03A-01D-0739-09	TCGA-AB-2996-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	74316291	74316291	G	T	SNP	LOC100130301	XM_001721302	human	genbank	54_36p	-1	model	silent	c.441	p.T147	0.000	NULL	NULL	-	no_errors
