Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCF3	55324	genome.wustl.edu	37	3	183909040	183909040	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183909040	183909040	T	C	SNP	ABCF3	NM_018358	human	genbank	57_37b	+1	validated	silent	c.1566	p.C522	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ACACA	31	genome.wustl.edu	37	17	35563786	35563786	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	35563786	35563786	C	G	SNP	ACACA	NM_198834	human	genbank	57_37b	-1	reviewed	missense	c.3859	p.D1287H	1.000	HMMPfam_ACC_central	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,superfamily_SSF56059,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN,HMMPfam_ACC_central,superfamily_SSF52096,HMMPfam_Carboxyl_trans	-	no_errors
ADAM32	203102	genome.wustl.edu	37	8	39091526	39091526	+	Silent	SNP	T	T	C	rs4515515	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	39091526	39091526	T	C	SNP	ADAM32	NM_145004	human	genbank	57_37b	+1	validated	silent	c.1743	p.T581	0.009	HMMSmart_SM00608,HMMPfam_ADAM_CR	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	
ADCY8	114	genome.wustl.edu	37	8	132051962	132051962	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	132051962	132051962	G	C	SNP	ADCY8	NM_001115	human	genbank	57_37b	-1	reviewed	silent	c.618	p.A206	0.347	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
AMPD1	270	genome.wustl.edu	37	1	115216584	115216584	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115216584	115216584	T	A	SNP	AMPD1	NM_000036	human	genbank	57_37b	-1	reviewed	missense	c.1920	p.K640N	1.000	superfamily_SSF51556,HMMPfam_A_deaminase	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors
ARHGAP30	257106	genome.wustl.edu	37	1	161018344	161018344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161018344	161018344	G	A	SNP	ARHGAP30	NM_001025598	human	genbank	57_37b	-1	validated	missense	c.2467	p.P823S	0.000	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ASAP1	50807	genome.wustl.edu	37	8	131140243	131140243	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	131140243	131140243	C	G	SNP	ASAP1	NM_018482	human	genbank	57_37b	-1	validated	silent	c.1311	p.L437	1.000	superfamily_ArfGAP	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
ATMIN	23300	genome.wustl.edu	37	16	81078489	81078489	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81078489	81078489	G	T	SNP	ATMIN	NM_015251	human	genbank	57_37b	+1	validated	missense	c.2386	p.D796Y	0.972	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
BARD1	580	genome.wustl.edu	37	2	215674224	215674224	+	Missense_Mutation	SNP	G	G	A	rs1048108	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	215674224	215674224	G	A	SNP	BARD1	NM_000465	human	genbank	57_37b	-1	reviewed	missense	c.70	p.P24S	0.961	NULL	superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_BRCT	-	
C15orf17	57184	genome.wustl.edu	37	15	75197529	75197529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75197529	75197529	G	A	SNP	C15orf17	NM_020447	human	genbank	57_37b	-1	validated	missense	c.346	p.P116S	1.000	NULL	NULL	-	no_errors
C19orf46	163183	genome.wustl.edu	37	19	36494306	36494306	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36494306	36494306	G	C	SNP	C19orf46	NM_001039876	human	genbank	57_37b	-1	validated	missense	c.1148	p.S383C	0.971	HMMPfam_KASH	HMMPfam_KASH	-	no_errors
C1orf210	149466	genome.wustl.edu	37	1	43748740	43748740	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43748740	43748740	C	G	SNP	C1orf210	NM_182517	human	genbank	57_37b	-1	validated	missense	c.58	p.V20L	0.000	NULL	NULL	-	no_errors
C20orf123	128506	genome.wustl.edu	37	20	45174807	45174807	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45174807	45174807	C	T	SNP	C20orf123	XM_002343721	human	genbank	57_37b	-1	model	nonsense	c.188	p.W63*	1.000	NULL	HMMPfam_DC_STAMP	-	no_errors
C2orf52	151477	genome.wustl.edu	37	2	232373772	232373772	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232373772	232373772	A	G	SNP	C2orf52	NR_024079	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.001	-	-	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140938303	140938303	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140938303	140938303	C	T	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	missense	c.3364	p.R1122W	0.997	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CKMT2	1160	genome.wustl.edu	37	5	80553589	80553589	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	80553589	80553589	G	C	SNP	CKMT2	NM_001099735	human	genbank	57_37b	+1	reviewed	missense	c.793	p.E265Q	1.000	superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans	superfamily_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans,PatternScan_GUANIDO_KINASE	-	no_errors
CLIP2	7461	genome.wustl.edu	37	7	73790923	73790923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73790923	73790923	G	A	SNP	CLIP2	NM_003388	human	genbank	57_37b	+1	reviewed	missense	c.2192	p.R731H	1.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CNTNAP2	26047	genome.wustl.edu	37	7	148112562	148112562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148112562	148112562	C	T	SNP	CNTNAP2	NM_014141	human	genbank	57_37b	+1	reviewed	missense	c.3850	p.R1284W	1.000	HMMSmart_SM00294	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
CPVL	54504	genome.wustl.edu	37	7	29103772	29103789	+	In_Frame_Del	DEL	TCTGATTCCCCACGTGGA	TCTGATTCCCCACGTGGA	-	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	TCTGATTCCCCACGTGGA	TCTGATTCCCCACGTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29103772	29103789	TCTGATTCCCCACGTGGA	-	DEL	CPVL	NM_019029	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1042_1025	p.IHVGNQ342in_frame_del	0.990:0.684:0.657:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.332:0.998:1.000:1.000:1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10	superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S10,PatternScan_CARBOXYPEPT_SER_SER	(deletion:cds_exon[29103677,29103850])	no_errors
DNAH3	55567	genome.wustl.edu	37	16	20966319	20966319	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20966319	20966319	G	C	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.10887	p.I3629M	0.998	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
DZIP1L	199221	genome.wustl.edu	37	3	137781705	137781705	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	137781705	137781705	C	G	SNP	DZIP1L	NM_173543	human	genbank	57_37b	-1	validated	missense	c.2257	p.G753R	0.060	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENSG00000228919	0	genome.wustl.edu	37	4	7940903	7940903	+	Missense_Mutation	SNP	A	A	G	rs7695170	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7940903	7940903	A	G	SNP	ENSG00000228919	ENST00000429019	human	ensembl	57_37b	+1	known	missense	c.11	p.Q4R	0.000	NULL	NULL	-	
ENSG00000246308	0	genome.wustl.edu	37	11	10830874	10830874	+	RNA	SNP	A	A	T	rs77823473	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10830874	10830874	A	T	SNP	ENSG00000246308	ENST00000499765	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	
ENSG00000247509	0	genome.wustl.edu	37	11	6340248	6340248	+	RNA	SNP	A	A	G	rs73396966	byCluster;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6340248	6340248	A	G	SNP	ENSG00000247509	ENST00000500545	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.005	-	-	-	
EPS15L1	58513	genome.wustl.edu	37	19	16528786	16528786	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16528786	16528786	C	T	SNP	EPS15L1	NM_021235	human	genbank	57_37b	-1	provisional	silent	c.1080	p.P360	0.010	superfamily_SSF47473,HMMSmart_EH	superfamily_SSF47473,HMMSmart_EH,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
EXD2	55218	genome.wustl.edu	37	14	69704442	69704442	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69704442	69704442	C	G	SNP	EXD2	NM_018199	human	genbank	57_37b	+1	provisional	missense	c.1068	p.F356L	1.000	NULL	superfamily_RNaseH_fold,HMMPfam_3_5_exonuc	-	no_errors
FAM190A	0	genome.wustl.edu	37	4	91230078	91230078	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	91230078	91230078	C	T	SNP	FAM190A	NM_001145065	human	genbank	57_37b	+1	validated	nonsense	c.643	p.Q215*	0.121	NULL	NULL	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92534655	92534655	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92534655	92534655	G	T	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.8476	p.G2826W	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
GADL1	339896	genome.wustl.edu	37	3	30892434	30892434	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	30892434	30892434	C	A	SNP	GADL1	NM_207359	human	genbank	57_37b	-1	validated	splice_site	c.429-1	e5-1	1.000	-	-	-	no_errors
GART	2618	genome.wustl.edu	37	21	34897279	34897279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34897279	34897279	C	T	SNP	GART	NM_000819	human	genbank	57_37b	-1	reviewed	silent	c.1095	p.L365	0.976	superfamily_Rudiment single hybrid motif,HMMPfam_GARS_C	superfamily_PreATP-grasp domain,HMMPfam_GARS_N,HMMPfam_GARS_A,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_GARS,superfamily_Rudiment single hybrid motif,HMMPfam_GARS_C,superfamily_PurM N-terminal domain-like,HMMPfam_AIRS,superfamily_PurM C-terminal domain-like,HMMPfam_AIRS_C,HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,PatternScan_GART	-	no_errors
GBF1	8729	genome.wustl.edu	37	10	104140919	104140919	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104140919	104140919	C	G	SNP	GBF1	NM_004193	human	genbank	57_37b	+1	provisional	missense	c.5206	p.L1736V	0.716	NULL	superfamily_Sec7,HMMPfam_Sec7,HMMSmart_Sec7	-	no_errors
GMPR	2766	genome.wustl.edu	37	6	16279067	16279067	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	16279067	16279067	T	C	SNP	GMPR	NM_006877	human	genbank	57_37b	+1	reviewed	silent	c.600	p.S200	0.971	superfamily_SSF51412,HMMPfam_IMPDH	superfamily_SSF51412,HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED	-	no_errors
GRAMD4	23151	genome.wustl.edu	37	22	47064620	47064620	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	47064620	47064620	A	T	SNP	GRAMD4	NM_015124	human	genbank	57_37b	+1	validated	missense	c.965	p.K322M	1.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568	-	no_errors
GYS2	2998	genome.wustl.edu	37	12	21716262	21716262	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21716262	21716262	C	T	SNP	GYS2	NM_021957	human	genbank	57_37b	-1	reviewed	missense	c.841	p.G281S	1.000	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
HNRNPH2	3188	genome.wustl.edu	37	X	100668305	100668305	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100668305	100668305	C	A	SNP	HNRNPH2	NM_001032393	human	genbank	57_37b	+1	reviewed	missense	c.1329	p.D443E	0.995	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors
INPP5B	3633	genome.wustl.edu	37	1	38397539	38397539	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38397539	38397539	C	A	SNP	INPP5B	ENST00000373023	human	ensembl	57_37b	-1	known	missense	c.578	p.R193L	0.000	NULL	PatternScan_LECTIN_LEGUME_BETA,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
IQSEC1	9922	genome.wustl.edu	37	3	12977153	12977153	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	12977153	12977153	C	G	SNP	IQSEC1	NM_014869	human	genbank	57_37b	-1	validated	missense	c.1405	p.D469H	1.000	NULL	superfamily_Sec7 domain,HMMPfam_Sec7,HMMSmart_SM00222,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
KIF4A	24137	genome.wustl.edu	37	X	69521793	69521793	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69521793	69521793	C	G	SNP	KIF4A	NM_012310	human	genbank	57_37b	+1	validated	missense	c.560	p.T187S	0.999	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
L3MBTL2	83746	genome.wustl.edu	37	22	41623175	41623175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41623175	41623175	C	T	SNP	L3MBTL2	NM_031488	human	genbank	57_37b	+1	validated	missense	c.1670	p.T557M	0.999	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	-	no_errors
LAYN	143903	genome.wustl.edu	37	11	111414758	111414758	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111414758	111414758	G	A	SNP	LAYN	NM_178834	human	genbank	57_37b	+1	provisional	missense	c.196	p.D66N	0.990	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	superfamily_C-type_lectin_fold,HMMSmart_CLECT,HMMPfam_Lectin_C	-	no_errors
LCN10	414332	genome.wustl.edu	37	9	139634413	139634413	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139634413	139634413	A	-	DEL	LCN10	NM_001001712	human	genbank	57_37b	-1	validated	frame_shift_del	c.563	p.L188fs	0.065	superfamily_Calycin	superfamily_Calycin,PatternScan_LIPOCALIN	(deletion:cds_exon[139634402,139634500])	no_errors
LEUTX	342900	genome.wustl.edu	37	19	40276356	40276356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40276356	40276356	C	T	SNP	LEUTX	NM_001143832	human	genbank	57_37b	+1	provisional	missense	c.88	p.R30C	0.002	HMMPfam_Homeobox,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	HMMPfam_Homeobox,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
LIFR	3977	genome.wustl.edu	37	5	38496650	38496650	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	38496650	38496650	T	C	SNP	LIFR	NM_001127671	human	genbank	57_37b	-1	reviewed	silent	c.1719	p.V573	0.194	HMMSmart_SM00060,superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2	-	no_errors
LOC100287599	0	genome.wustl.edu	37	18	31803107	31803107	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31803107	31803107	G	C	SNP	LOC100287599	XM_002343604	human	genbank	57_37b	+1	model	missense	c.178	p.D60H	1.000	NULL	NULL	-	no_errors
LOC100288732	0	genome.wustl.edu	37	15	88678459	88678459	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	88678459	88678459	G	A	SNP	LOC100288732	XM_002343392	human	genbank	57_37b	+1	model	missense	c.466	p.G156R	0.201	NULL	NULL	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69847032	69847032	+	Missense_Mutation	SNP	C	C	A	rs2491581	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69847032	69847032	C	A	SNP	LOC100288765	XM_002342925	human	genbank	57_37b	+1	model	missense	c.1126	p.Q376K	0.892	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
LPHN3	23284	genome.wustl.edu	37	4	62778466	62778466	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	62778466	62778466	C	T	SNP	LPHN3	NM_015236	human	genbank	57_37b	+1	reviewed	silent	c.1899	p.A633	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170063010	170063010	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170063010	170063010	T	C	SNP	LRP2	NM_004525	human	genbank	57_37b	-1	reviewed	missense	c.7220	p.N2407S	0.976	superfamily_SSF63825	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_2,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
LRRC33	375387	genome.wustl.edu	37	3	196387122	196387122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196387122	196387122	G	T	SNP	LRRC33	NM_198565	human	genbank	57_37b	+1	provisional	missense	c.608	p.G203V	0.005	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
MEGF11	84465	genome.wustl.edu	37	15	66420684	66420684	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66420684	66420684	G	C	SNP	MEGF11	NM_032445	human	genbank	57_37b	-1	validated	missense	c.58	p.L20V	0.996	NULL	HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_SM00180,HMMPfam_EGF_2	-	no_errors
MFN1	55669	genome.wustl.edu	37	3	179094864	179094864	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	179094864	179094864	G	C	SNP	MFN1	NM_033540	human	genbank	57_37b	+1	reviewed	missense	c.1132	p.D378H	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,HMMPfam_Fzo_mitofusin	-	no_errors
MICAL2	9645	genome.wustl.edu	37	11	12225820	12225820	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12225820	12225820	C	G	SNP	MICAL2	NM_014632	human	genbank	57_37b	+1	provisional	silent	c.288	p.P96	0.649	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
MLL5	55904	genome.wustl.edu	37	7	104753730	104753730	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	104753730	104753730	C	A	SNP	MLL5	NM_018682	human	genbank	57_37b	+1	reviewed	missense	c.5527	p.Q1843K	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
MSH6	2956	genome.wustl.edu	37	2	48027198	48027198	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48027198	48027198	A	C	SNP	MSH6	NM_000179	human	genbank	57_37b	+1	reviewed	missense	c.2076	p.K692N	1.000	HMMPfam_MutS_II	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_DNA repair protein MutS domain I,HMMPfam_MutS_I,HMMPfam_MutS_II,HMMPfam_MutS_III,superfamily_DNA repair protein MutS domain III,HMMSmart_SM00533,HMMPfam_MutS_IV,HMMPfam_MutS_V,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00534,PatternScan_DNA_MISMATCH_REPAIR_2	-	no_errors
MYOM3	127294	genome.wustl.edu	37	1	24400656	24400656	+	Missense_Mutation	SNP	C	C	T	rs34121526	byCluster;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24400656	24400656	C	T	SNP	MYOM3	NM_152372	human	genbank	57_37b	-1	validated	missense	c.2962	p.E988K	0.953	HMMSmart_SM00409,PatternScan_EF_HAND_1	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig	-	
NCAPD2	9918	genome.wustl.edu	37	12	6637440	6637440	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6637440	6637440	T	C	SNP	NCAPD2	NM_014865	human	genbank	57_37b	+1	validated	missense	c.3245	p.L1082P	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
OLFML3	56944	genome.wustl.edu	37	1	114523022	114523022	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114523022	114523022	G	C	SNP	OLFML3	NM_020190	human	genbank	57_37b	+1	validated	missense	c.183	p.K61N	1.000	NULL	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
OR2T3	343173	genome.wustl.edu	37	1	248636865	248636865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248636865	248636865	G	A	SNP	OR2T3	NM_001005495	human	genbank	57_37b	+1	provisional	missense	c.214	p.A72T	0.266	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6X1	390260	genome.wustl.edu	37	11	123624318	123624318	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123624318	123624318	C	G	SNP	OR6X1	NM_001005188	human	genbank	57_37b	-1	provisional	missense	c.909	p.M303I	0.025	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
P2RY2	5029	genome.wustl.edu	37	11	72946208	72946208	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72946208	72946208	G	A	SNP	P2RY2	NM_002564	human	genbank	57_37b	+1	reviewed	missense	c.1004	p.R335K	0.787	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCNX	22990	genome.wustl.edu	37	14	71514550	71514550	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	71514550	71514550	C	A	SNP	PCNX	NM_014982	human	genbank	57_37b	+1	validated	missense	c.4187	p.A1396D	1.000	NULL	HMMPfam_Pecanex_C	-	no_errors
PHACTR2	9749	genome.wustl.edu	37	6	144093518	144093523	+	In_Frame_Del	DEL	TGACTC	TGACTC	-	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	TGACTC	TGACTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144093518	144093523	TGACTC	-	DEL	PHACTR2	NM_001100164	human	genbank	57_37b	+1	validated	in_frame_del	c.1356_1361	p.SD456in_frame_del	0.960:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_RPEL,HMMSmart_SM00707	(deletion:cds_exon[144093395,144093594])	no_errors
PLEKHA4	57664	genome.wustl.edu	37	19	49355488	49355488	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49355488	49355488	G	C	SNP	PLEKHA4	NM_020904	human	genbank	57_37b	-1	validated	silent	c.1422	p.P474	0.998	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PODN	127435	genome.wustl.edu	37	1	53535536	53535536	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	53535536	53535536	G	C	SNP	PODN	NM_153703	human	genbank	57_37b	+1	validated	missense	c.153	p.Q51H	0.833	NULL	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,superfamily_SSF52047	-	no_errors
PPEF1	5475	genome.wustl.edu	37	X	18748318	18748318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18748318	18748318	C	T	SNP	PPEF1	NM_006240	human	genbank	57_37b	+1	reviewed	silent	c.66	p.I22	1.000	HMMSmart_SM00015,HMMPfam_IQ	HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE,HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
PPP1R12A	4659	genome.wustl.edu	37	12	80214707	80214707	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	80214707	80214707	C	G	SNP	PPP1R12A	NM_001143885	human	genbank	57_37b	-1	reviewed	missense	c.961	p.E321Q	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
PPP4R2	151987	genome.wustl.edu	37	3	73114268	73114268	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	73114268	73114268	G	C	SNP	PPP4R2	NM_174907	human	genbank	57_37b	+1	provisional	missense	c.904	p.E302Q	1.000	NULL	HMMPfam_PPP4R2	-	no_errors
PRPF4B	8899	genome.wustl.edu	37	6	4021684	4021684	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	4021684	4021684	C	A	SNP	PRPF4B	NM_003913	human	genbank	57_37b	+1	reviewed	missense	c.25	p.L9I	0.906	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
PRR11	55771	genome.wustl.edu	37	17	57262479	57262479	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57262479	57262479	A	T	SNP	PRR11	NM_018304	human	genbank	57_37b	+1	validated	missense	c.193	p.N65Y	0.001	NULL	NULL	-	no_errors
PSIP1	11168	genome.wustl.edu	37	9	15486061	15486061	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	15486061	15486061	C	G	SNP	PSIP1	NM_001128217	human	genbank	57_37b	-1	validated	silent	c.399	p.V133	1.000	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293	-	no_errors
RGR	5995	genome.wustl.edu	37	10	86014115	86014115	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	86014115	86014115	C	T	SNP	RGR	NM_002921	human	genbank	57_37b	+1	reviewed	silent	c.558	p.F186	0.993	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_OPSIN	-	no_errors
RGS22	26166	genome.wustl.edu	37	8	101075866	101075866	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	101075866	101075866	G	C	SNP	RGS22	NM_015668	human	genbank	57_37b	-1	validated	nonsense	c.1130	p.S377*	0.000	NULL	superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS	-	no_errors
RIN2	54453	genome.wustl.edu	37	20	19951534	19951534	+	Missense_Mutation	SNP	T	T	G	rs3803981	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	19951534	19951534	T	G	SNP	RIN2	NM_018993	human	genbank	57_37b	+1	reviewed	missense	c.589	p.S197A	1.000	NULL	superfamily_SH2 domain,superfamily_VPS9 domain (Pfam 02204),HMMSmart_SM00167,HMMPfam_VPS9,HMMPfam_RA,HMMSmart_SM00314	-	
SLC11A1	6556	genome.wustl.edu	37	2	219255977	219255977	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219255977	219255977	C	A	SNP	SLC11A1	NM_000578	human	genbank	57_37b	+1	reviewed	missense	c.1011	p.N337K	1.000	HMMPfam_Nramp	HMMPfam_Nramp	-	no_errors
SLIT2	9353	genome.wustl.edu	37	4	20525795	20525795	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	20525795	20525795	G	-	DEL	SLIT2	NM_004787	human	genbank	57_37b	+1	provisional	frame_shift_del	c.1433	p.C478fs	1.000	superfamily_L domain-like,HMMSmart_SM00082,HMMPfam_LRRCT	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00365,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	(deletion:cds_exon[20525637,20525800])	no_errors
SMTN	6525	genome.wustl.edu	37	22	31484057	31484057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31484057	31484057	G	A	SNP	SMTN	NM_134270	human	genbank	57_37b	+1	reviewed	missense	c.158	p.R53H	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors
STX6	10228	genome.wustl.edu	37	1	180957443	180957443	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	180957443	180957443	G	A	SNP	STX6	NM_005819	human	genbank	57_37b	-1	validated	silent	c.528	p.V176	1.000	HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
STXBP5	134957	genome.wustl.edu	37	6	147680336	147680336	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	147680336	147680336	G	A	SNP	STXBP5	NM_001127715	human	genbank	57_37b	+1	reviewed	missense	c.2422	p.D808N	0.996	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMPfam_LLGL	-	no_errors
TACC1	6867	genome.wustl.edu	37	8	38695996	38695996	+	Silent	SNP	T	T	C	rs2292741	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38695996	38695996	T	C	SNP	TACC1	NM_006283	human	genbank	57_37b	+1	reviewed	silent	c.1848	p.T616	0.981	HMMPfam_TACC	HMMPfam_TACC	-	
TBC1D2B	23102	genome.wustl.edu	37	15	78290617	78290617	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78290617	78290617	T	C	SNP	TBC1D2B	NM_144572	human	genbank	57_37b	-1	validated	missense	c.2777	p.E926G	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
TBX15	6913	genome.wustl.edu	37	1	119428004	119428004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	119428004	119428004	C	T	SNP	TBX15	NM_152380	human	genbank	57_37b	-1	reviewed	missense	c.842	p.R281Q	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
TNFAIP3	7128	genome.wustl.edu	37	6	138201278	138201278	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	138201278	138201278	G	T	SNP	TNFAIP3	NM_006290	human	genbank	57_37b	+1	reviewed	silent	c.1977	p.G659	0.004	HMMPfam_zf-A20,HMMSmart_ZnF_A20	HMMPfam_OTU,HMMPfam_zf-A20,HMMSmart_ZnF_A20	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A	rs28934574	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577094	7577094	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.844	p.R282W	0.997	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	
TTC24	164118	genome.wustl.edu	37	1	156555562	156555562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156555562	156555562	C	T	SNP	TTC24	NM_001105669	human	genbank	57_37b	+1	provisional	missense	c.674	p.T225M	0.000	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179621321	179621321	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179621321	179621321	G	C	SNP	TTN	ENST00000342175	human	ensembl	57_37b	-1	known	missense	c.10369	p.Q3457E	0.001	superfamily_Concanavalin A-like lectins/glucanases,superfamily_DBL homology domain (DH-domain),superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_DBL homology domain (DH-domain),superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TYW1	55253	genome.wustl.edu	37	7	66474604	66474604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	66474604	66474604	C	A	SNP	TYW1	NM_018264	human	genbank	57_37b	+1	validated	missense	c.308	p.S103Y	0.237	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes,HMMPfam_Wyosine_form	-	no_errors
UBAC2	337867	genome.wustl.edu	37	13	99853443	99853443	+	RNA	SNP	T	T	G	rs7338947	byCluster;byHapMap;by1000genomes	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	99853443	99853443	T	G	SNP	UBAC2	NR_026644	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
UGT1A3	54659	genome.wustl.edu	37	2	234638186	234638186	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234638186	234638186	C	T	SNP	UGT1A3	NM_019093	human	genbank	57_37b	+1	reviewed	silent	c.414	p.I138	0.035	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215848874	215848874	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215848874	215848874	G	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.12379	p.L4127I	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
USP42	84132	genome.wustl.edu	37	7	6193520	6193520	+	Missense_Mutation	SNP	C	C	T	rs61729725	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6193520	6193520	C	T	SNP	USP42	NM_032172	human	genbank	57_37b	+1	validated	missense	c.2335	p.R779C	0.000	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	
VWF	7450	genome.wustl.edu	37	12	6125930	6125930	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6125930	6125930	T	A	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	missense	c.5160	p.K1720N	0.061	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168106882	168106882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168106882	168106882	G	A	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.8980	p.E2994K	0.142	NULL	HMMPfam_Xin	-	no_errors
ZMYM4	9202	genome.wustl.edu	37	1	35851767	35851767	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0J4-01A-11W-A050-09	TCGA-AO-A0J4-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35851767	35851767	T	G	SNP	ZMYM4	NM_005095	human	genbank	57_37b	+1	validated	missense	c.1813	p.Y605D	1.000	HMMPfam_zf-FCS,HMMSmart_SM00746	HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
