Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
AURKAIP1	54998	genome.wustl.edu	37	1	1309524	1309524	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127229.1	-1	validated	p.G118	0.000	112	0%	41	17.1%	234	25.2%	-	-	-	NULL
GNB1	2782	genome.wustl.edu	37	1	1720561	1720561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002074.2	-1	reviewed	p.R283C	1.000	54	0%	25	28%	643	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KIAA1751	85452	genome.wustl.edu	37	1	1888088	1888088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.M663V	0.000	42	0%	21	28.6%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1897819	1897819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.K464N	0.262	62	0%	35	28.6%	0	-	possibly_damaging(0.942)	tolerated(0.47)	neutral(0.398)	NULL
RER1	11079	genome.wustl.edu	37	1	2333698	2333698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007033.4	+1	reviewed	p.A140T	1.000	59	0%	26	30.8%	210	46.1%	benign(0.046)	deleterious(0.05)	neutral(0.348)	HMMPfam_Rer1
PRDM16	63976	genome.wustl.edu	37	1	3342243	3342243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.C1012Y	1.000	58	0%	30	33.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCDC27	148870	genome.wustl.edu	37	1	3673373	3673373	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152492.2	+1	validated	p.S210	0.343	93	0%	28	17.9%	0	-	-	-	-	NULL
LRRC47	57470	genome.wustl.edu	37	1	3699292	3699292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020710.2	-1	validated	p.P449L	1.000	131	0%	51	29.4%	81	41.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_B3_4
CEP104	9731	genome.wustl.edu	37	1	3755645	3755645	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014704.3	-1	validated	p.R258	0.993	197	0%	78	26.9%	25	36%	-	-	-	NULL
DFFB	1677	genome.wustl.edu	37	1	3789035	3789035	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004402.2	+1	reviewed	e6-1	1.000	88	0%	42	21.4%	0	-	-	-	-	-
CHD5	26038	genome.wustl.edu	37	1	6170461	6170461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.R1792M	1.000	52	0%	22	18.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CHDCT2
ACOT7	11332	genome.wustl.edu	37	1	6354989	6354989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181864.2	-1	reviewed	p.H265R	1.000	34	0%	22	31.8%	42	54.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
ESPN	83715	genome.wustl.edu	37	1	6504642	6504642	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031475.2	+1	reviewed	p.Q364H	0.546	158	0%	65	29.2%	6	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ankyrin repeat
PHF13	148479	genome.wustl.edu	37	1	6679865	6679865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153812.2	+1	validated	p.E48D	0.479	52	0%	28	32.1%	12	33.3%	probably_damaging(0.985)	tolerated(0.27)	neutral(0.466)	NULL
PHF13	148479	genome.wustl.edu	37	1	6680027	6680027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153812.2	+1	validated	p.K102N	1.000	57	0%	30	33.3%	11	9%	probably_damaging(0.972)	tolerated(0.39)	neutral(0.430)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7737665	7737665	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.D929A	1.000	129	0%	50	30%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TIG,superfamily_E set domains
CAMTA1	23261	genome.wustl.edu	37	1	7804937	7804937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.P1409S	1.000	278	0.4%	121	27.3%	1	0%	benign(0.308)	tolerated(0.14)	neutral(0.346)	NULL
PER3	8863	genome.wustl.edu	37	1	7845627	7845627	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016831.1	+1	reviewed	p.R85	0.766	65	0%	44	56.8%	2	100%	-	-	-	NULL
RERE	473	genome.wustl.edu	37	1	8421438	8421438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.S710N	1.000	69	0%	31	16.1%	39	30.7%	unknown(0)	deleterious(0.01)	-	HMMPfam_Atrophin-1
ENO1	2023	genome.wustl.edu	37	1	8926457	8926457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001428.2	-1	reviewed	p.R183H	1.000	200	0%	72	29.2%	1272	43.6%	benign(0.127)	tolerated(0.07)	neutral(0.330)	HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like
ENO1	2023	genome.wustl.edu	37	1	8927297	8927297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001428.2	-1	reviewed	p.A108V	1.000	121	0%	78	32.1%	1223	43.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Enolase_N,superfamily_Enolase N-terminal domain-like
SLC2A7	155184	genome.wustl.edu	37	1	9078420	9078420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207420.2	-1	provisional	p.A151T	1.000	38	0%	22	31.8%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter
C1orf200	644997	genome.wustl.edu	37	1	9713940	9713940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377320	-1	known	p.V134A	0.176	137	0%	69	20.3%	0	-	benign(0.053)	-	-	NULL
C1orf200	644997	genome.wustl.edu	37	1	9714612	9714612	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027045.1	-1	validated	NULL	0.034	24	0%	13	38.5%	0	-	-	-	-	-
CLSTN1	22883	genome.wustl.edu	37	1	9790629	9790629	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.G961	0.063	32	0%	23	30.4%	224	41.5%	-	-	-	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9791921	9791921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.H821Y	1.000	61	0%	30	36.7%	207	33.3%	possibly_damaging(0.561)	deleterious(0.04)	deleterious(0.540)	NULL
NMNAT1	64802	genome.wustl.edu	37	1	10042464	10042464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022787.3	+1	provisional	p.G182E	1.000	291	0%	162	31.5%	18	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
UBE4B	10277	genome.wustl.edu	37	1	10240005	10240005	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105562.1	+1	reviewed	p.S1300	0.882	251	0.4%	126	11.9%	74	21.6%	-	-	-	HMMPfam_U-box,superfamily_RING/U-box
KIF1B	23095	genome.wustl.edu	37	1	10384910	10384910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.D832N	1.000	222	0%	135	33.3%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
KIF1B	23095	genome.wustl.edu	37	1	10405975	10405975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.V1208A	1.000	161	0.6%	104	39.4%	5	20%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
PGD	5226	genome.wustl.edu	37	1	10479762	10479762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002631.2	+1	reviewed	p.T470A	1.000	260	0%	123	17.9%	561	40.9%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_6PGD,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
MTOR	2475	genome.wustl.edu	37	1	11294212	11294212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004958.3	-1	reviewed	p.E773D	1.000	162	0.6%	81	14.8%	12	25%	possibly_damaging(0.475)	tolerated(0.64)	neutral(0.160)	superfamily_ARM-type_fold
PTCHD2	57540	genome.wustl.edu	37	1	11577529	11577529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020780.1	+1	validated	p.V587I	1.000	122	0%	49	18.4%	0	-	possibly_damaging(0.93)	tolerated(0.33)	neutral(0.401)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
CLCN6	1185	genome.wustl.edu	37	1	11894612	11894612	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.P586	0.003	122	0%	77	22.1%	1	100%	-	-	-	superfamily_Clc chloride channel
CLCN6	1185	genome.wustl.edu	37	1	11898614	11898614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.P809H	0.997	147	0%	59	32.2%	4	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_CBS,superfamily_CBS-domain
KIAA2013	90231	genome.wustl.edu	37	1	11982886	11982886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138346.1	-1	provisional	p.Q565R	1.000	28	0%	21	23.8%	154	38.3%	possibly_damaging(0.806)	deleterious(0.02)	deleterious(0.686)	HMMPfam_DUF2152
TNFRSF1B	7133	genome.wustl.edu	37	1	12252505	12252505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001066.2	+1	reviewed	p.V159M	0.140	101	0%	69	29%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00208,superfamily_TNF receptor-like
VPS13D	55187	genome.wustl.edu	37	1	12336826	12336826	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.R1061*	0.008	413	0.2%	291	28.5%	3	0%	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12408930	12408930	+	Silent	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000011700	+1	known	p.A1862G	1.000	203	0%	117	28.2%	7	100%	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12416580	12416580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.L3333I	1.000	199	0%	114	25.4%	6	33.3%	benign(0.018)	tolerated(0.47)	neutral(0.011)	HMMPfam_DUF1162
VPS13D	55187	genome.wustl.edu	37	1	12460263	12460263	+	Missense_Mutation	SNP	C	C	T	rs183460656	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.T3887M	1.000	220	0%	115	25.2%	16	56.2%	possibly_damaging(0.829)	tolerated(0.06)	deleterious(0.637)	NULL
AADACL3	126767	genome.wustl.edu	37	1	12785534	12785534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103170.1	+1	validated	p.E208D	0.000	758	0%	417	30.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
PRAMEF12	390999	genome.wustl.edu	37	1	12835291	12835291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080830.1	+1	provisional	p.R94H	0.127	154	0%	60	25%	0	-	benign(0.06)	tolerated(0.85)	neutral(0.005)	superfamily_SSF52047
PRAMEF12	390999	genome.wustl.edu	37	1	12836154	12836154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080830.1	+1	provisional	p.E252D	0.000	626	0.2%	349	28.1%	1	100%	benign(0.003)	tolerated(0.55)	neutral(0.007)	superfamily_SSF52047
PRAMEF1	65121	genome.wustl.edu	37	1	12853423	12853423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023013.1	+1	provisional	p.S16I	0.002	508	0%	284	25%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52047
PRAMEF2	65122	genome.wustl.edu	37	1	12919735	12919735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023014.1	+1	provisional	p.P159S	0.000	1206	0.2%	743	27.3%	0	-	benign(0.001)	tolerated(0.44)	neutral(0.013)	superfamily_SSF52047
PRAMEF18	391003	genome.wustl.edu	37	1	13475241	13475241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099850.1	-1	validated	p.E296D	0.002	410	0%	243	28%	0	-	possibly_damaging(0.719)	tolerated(0.16)	neutral(0.320)	superfamily_SSF52047
PRDM2	7799	genome.wustl.edu	37	1	14106680	14106680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012231.4	+1	reviewed	p.P797H	0.969	360	0%	217	29%	12	58.3%	unknown(0)	deleterious(0.01)	-	NULL
PRDM2	7799	genome.wustl.edu	37	1	14108473	14108473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012231.4	+1	reviewed	p.R1395*	0.986	292	0.7%	164	25%	15	60%	-	-	-	NULL
CASP9	842	genome.wustl.edu	37	1	15833485	15833485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001229.2	-1	reviewed	p.R180H	0.975	100	1%	48	18.8%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
DNAJC16	23341	genome.wustl.edu	37	1	15863053	15863053	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015291.2	+1	provisional	p.Q106	1.000	137	0%	66	39.4%	12	41.6%	-	-	-	superfamily_Chaperone J-domain
EPHA2	1969	genome.wustl.edu	37	1	16460967	16460967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004431.3	-1	reviewed	p.R560C	1.000	33	0%	24	45.8%	5	20%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
FBXO42	54455	genome.wustl.edu	37	1	16577348	16577348	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018994.1	-1	provisional	p.K657	0.996	367	0.3%	206	26.2%	15	33.3%	-	-	-	NULL
MST1P9	11223	genome.wustl.edu	37	1	17083867	17083867	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002729.2	-1	validated	NULL	1.000	162	0%	83	9.6%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	-
MFAP2	4237	genome.wustl.edu	37	1	17301785	17301785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002403.3	-1	reviewed	p.A143T	1.000	71	0%	26	15.4%	22	4.5%	benign(0.264)	deleterious(0.03)	neutral(0.392)	HMMPfam_MAGP
PADI4	23569	genome.wustl.edu	37	1	17664606	17664606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012387.2	+1	reviewed	p.S161Y	0.003	157	0%	98	27.6%	0	-	possibly_damaging(0.818)	tolerated(0.08)	deleterious(0.609)	HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain
RCC2	55920	genome.wustl.edu	37	1	17743025	17743025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136204.1	-1	validated	p.P326H	1.000	111	0.9%	31	32.3%	112	48.2%	possibly_damaging(0.81)	tolerated(0.05)	deleterious(0.650)	superfamily_RCC1/BLIP-II
ARHGEF10L	55160	genome.wustl.edu	37	1	17914019	17914019	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018125.3	+1	validated	p.A34	1.000	138	0%	62	32.3%	2	100%	-	-	-	NULL
ARHGEF10L	55160	genome.wustl.edu	37	1	17958877	17958877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018125.3	+1	validated	p.G549D	0.997	227	0%	91	29.7%	9	33.3%	benign(0.047)	tolerated(0.38)	neutral(0.021)	superfamily_PH domain-like
TAS1R2	80834	genome.wustl.edu	37	1	19166750	19166750	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.Y621	1.000	68	0%	48	22.9%	0	-	-	-	-	HMMPfam_7tm_3
TAS1R2	80834	genome.wustl.edu	37	1	19180816	19180816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.R383H	0.145	92	0%	44	20.5%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_ANF_receptor,superfamily_SSF53822
UBR4	23352	genome.wustl.edu	37	1	19439345	19439345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R3825H	1.000	249	0.4%	152	34.9%	29	3.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19523679	19523679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R325H	1.000	179	0%	119	27.7%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA0090	23065	genome.wustl.edu	37	1	19545834	19545834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015047.1	-1	predicted	p.L982P	1.000	354	0%	177	19.8%	80	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1620
AKR7L	246181	genome.wustl.edu	37	1	19597299	19597299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457194	-1	known	p.L71P	0.097	50	0%	26	19.2%	0	-	unknown(0)	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TMCO4	255104	genome.wustl.edu	37	1	20020932	20020932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.S499P	1.000	120	0%	65	12.3%	23	21.7%	benign(0.21)	tolerated(0.27)	neutral(0.054)	HMMPfam_DUF726
TMCO4	255104	genome.wustl.edu	37	1	20067310	20067310	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.N334	1.000	51	0%	25	24%	24	33.3%	-	-	-	HMMPfam_DUF726
TMCO4	255104	genome.wustl.edu	37	1	20072051	20072051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181719.4	-1	validated	p.T284M	0.998	161	0%	64	32.8%	16	37.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_DUF726
PINK1	65018	genome.wustl.edu	37	1	20971111	20971111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032409.2	+1	reviewed	p.R302H	0.001	121	0%	46	17.4%	89	38.2%	benign(0.162)	tolerated(0.14)	neutral(0.264)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KIF17	57576	genome.wustl.edu	37	1	21031015	21031015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020816.2	-1	validated	p.L350F	0.999	50	0%	38	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
HP1BP3	50809	genome.wustl.edu	37	1	21083667	21083667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016287.3	-1	validated	p.T325A	1.000	151	0%	78	24.4%	58	20.6%	benign(0.09)	deleterious(0)	neutral(0.451)	"HMMPfam_Linker_histone,superfamily_""Winged helix"" DNA-binding domain"
ALPL	249	genome.wustl.edu	37	1	21887175	21887175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000478.4	+1	reviewed	p.A40T	1.000	113	0%	66	33.3%	14	92.8%	benign(0)	-	-	superfamily_Alkaline_phosphatase_core
CELA3A	10136	genome.wustl.edu	37	1	22332025	22332025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005747.4	+1	reviewed	p.G72D	1.000	114	0%	43	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS
CDC42	998	genome.wustl.edu	37	1	22413323	22413323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039802.1	+1	reviewed	p.K150N	1.000	907	0%	487	30.8%	423	51.3%	benign(0.345)	tolerated(0.16)	neutral(0.168)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB40	9923	genome.wustl.edu	37	1	22828921	22828921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083621.1	+1	validated	p.G385D	0.012	405	0%	280	31.1%	5	60%	benign(0.001)	tolerated(0.69)	neutral(0.002)	NULL
EPHA8	2046	genome.wustl.edu	37	1	22927298	22927298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.R845W	0.993	38	0%	17	23.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
C1QC	714	genome.wustl.edu	37	1	22974153	22974153	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114101.1	+1	reviewed	p.G205	0.931	234	0%	117	28.2%	366	0%	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
C1QB	713	genome.wustl.edu	37	1	22987818	22987818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000491.3	+1	reviewed	p.G234D	0.554	571	0.2%	278	30.6%	444	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
EPHB2	2048	genome.wustl.edu	37	1	23101737	23101737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374625	+1	known	p.E15*	0.001	127	0%	59	27.1%	0	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
HNRNPR	10236	genome.wustl.edu	37	1	23637442	23637442	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102398.1	-1	reviewed	p.D472E	1.000	202	0%	118	18.6%	62	27.4%	unknown(0)	tolerated(0.59)	-	NULL
ASAP3	55616	genome.wustl.edu	37	1	23769023	23769023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017707.3	-1	reviewed	p.R186W	0.997	53	0%	35	25.7%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCEB3	6924	genome.wustl.edu	37	1	24080872	24080872	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003198.2	+1	reviewed	p.G597	0.387	245	0%	128	17.2%	36	11.1%	-	-	-	HMMPfam_Elongin_A
PITHD1	57095	genome.wustl.edu	37	1	24113854	24113854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020362.4	+1	validated	p.H208	1.000	119	0%	74	36.5%	111	28.8%	-	-	-	NULL
LYPLA2	11313	genome.wustl.edu	37	1	24121077	24121077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007260.2	+1	reviewed	p.S211I	1.000	137	0%	62	37.1%	129	43.4%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Abhydrolase_2,superfamily_SSF53474
CNR2	1269	genome.wustl.edu	37	1	24201701	24201701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001841.2	-1	reviewed	p.R136H	0.975	101	0%	50	32%	0	-	benign(0.011)	tolerated(0.7)	neutral(0.003)	HMMPfam_7tm_1,superfamily_SSF81321
SRRM1	10250	genome.wustl.edu	37	1	24995849	24995849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005839.3	+1	validated	p.K659E	1.000	339	0%	228	13.2%	101	18.8%	unknown(0)	tolerated(0.05)	-	NULL
RHD	6007	genome.wustl.edu	37	1	25611195	25611195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016124.3	+1	reviewed	p.L94M	0.988	160	0%	76	14.5%	1	100%	possibly_damaging(0.475)	tolerated(0.97)	neutral(0.157)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
SEPN1	57190	genome.wustl.edu	37	1	26136182	26136182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354177	+1	known	p.A260V	1.000	57	0%	26	26.9%	83	36.1%	possibly_damaging(0.862)	tolerated(0.05)	deleterious(0.678)	NULL
PAFAH2	5051	genome.wustl.edu	37	1	26299107	26299107	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000437.3	-1	reviewed	p.P342	1.000	353	0%	198	31.3%	18	55.5%	-	-	-	HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases
PAFAH2	5051	genome.wustl.edu	37	1	26311004	26311004	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000437.3	-1	reviewed	p.A119	1.000	75	1.3%	50	34%	7	14.2%	-	-	-	HMMPfam_PAF-AH_p_II,superfamily_alpha/beta-Hydrolases
EXTL1	2134	genome.wustl.edu	37	1	26349435	26349435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.V100M	0.968	99	0%	67	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exostosin
EXTL1	2134	genome.wustl.edu	37	1	26355692	26355692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.R263H	0.043	37	0%	42	14.3%	0	-	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMPfam_Exostosin
CNKSR1	10256	genome.wustl.edu	37	1	26510587	26510587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006314.2	+1	reviewed	p.P294Q	0.028	87	0%	53	24.5%	22	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_PDZ domain-like
CATSPER4	378807	genome.wustl.edu	37	1	26520292	26520292	+	Silent	SNP	G	G	A	rs12138368	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198137.1	+1	validated	p.L124	0.993	141	0%	76	30.3%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
UBXN11	91544	genome.wustl.edu	37	1	26609278	26609278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.S385N	0.585	66	0%	26	38.5%	31	29%	benign(0.002)	tolerated(0.7)	neutral(0.002)	superfamily_Ubiquitin-like
UBXN11	91544	genome.wustl.edu	37	1	26612419	26612419	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183008.2	-1	reviewed	p.G223	0.003	52	0%	25	28%	22	31.8%	-	-	-	superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain
LIN28A	79727	genome.wustl.edu	37	1	26737393	26737393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024674.4	+1	validated	p.V4A	1.000	35	0%	15	40%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
DHDDS	79947	genome.wustl.edu	37	1	26769270	26769270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024887.2	+1	validated	p.A77T	1.000	280	0%	154	24.7%	15	20%	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	HMMPfam_Prenyltransf,superfamily_Undecaprenyl diphosphate synthase
RPS6KA1	6195	genome.wustl.edu	37	1	26898686	26898686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006665.1	+1	reviewed	p.G626S	1.000	236	0%	120	12.5%	100	10%	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ARID1A	8289	genome.wustl.edu	37	1	27105957	27105957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.Q1856H	1.000	284	0.4%	143	17.5%	68	20.5%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27107097	27107097	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R2236	0.542	142	0%	68	38.2%	88	60.2%	-	-	-	NULL
NUDC	10726	genome.wustl.edu	37	1	27269431	27269431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006600.2	+1	provisional	p.H206Y	0.996	46	0%	23	39.1%	109	39.4%	benign(0.008)	tolerated(1)	-	superfamily_HSP20_chap,HMMPfam_CS
FAM46B	115572	genome.wustl.edu	37	1	27332907	27332907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052943.3	-1	validated	p.R269H	1.000	17	0%	13	38.5%	2	0%	probably_damaging(0.969)	tolerated(0.09)	deleterious(0.708)	HMMPfam_DUF1693
WDTC1	23038	genome.wustl.edu	37	1	27627870	27627870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.K461N	1.000	115	0%	55	34.5%	29	44.8%	possibly_damaging(0.836)	deleterious(0.03)	deleterious(0.684)	superfamily_WD40 repeat-like,HMMSmart_SM00028,superfamily_TPR-like
SYTL1	84958	genome.wustl.edu	37	1	27674489	27674489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032872.1	+1	provisional	p.L149I	0.001	57	0%	24	20.8%	37	16.2%	possibly_damaging(0.925)	tolerated(0.4)	neutral(0.390)	NULL
GPR3	2827	genome.wustl.edu	37	1	27720316	27720316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.A5V	0.814	185	0.5%	88	17%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_SSF81321
GPR3	2827	genome.wustl.edu	37	1	27721053	27721053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.V251M	0.991	77	0%	49	28.6%	1	100%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	HMMPfam_7tm_1,superfamily_SSF81321
GPR3	2827	genome.wustl.edu	37	1	27721276	27721276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.R325H	1.000	184	0%	86	23.3%	0	-	possibly_damaging(0.735)	tolerated(0.1)	deleterious(0.555)	superfamily_SSF81321
WASF2	10163	genome.wustl.edu	37	1	27742593	27742593	+	Silent	SNP	G	G	A	rs187587794	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006990.2	-1	reviewed	p.D141	0.962	434	0.2%	234	35%	27	51.8%	-	-	-	NULL
XKR8	55113	genome.wustl.edu	37	1	28293079	28293079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018053.2	+1	provisional	p.R186C	1.000	97	0%	49	26.5%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XK-related
SESN2	83667	genome.wustl.edu	37	1	28599128	28599128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031459.3	+1	reviewed	p.A192T	1.000	238	0%	110	27.3%	33	54.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PA26
GMEB1	10691	genome.wustl.edu	37	1	29040761	29040761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006582.2	+1	reviewed	p.P400T	1.000	154	0%	88	10.2%	26	38.4%	possibly_damaging(0.918)	tolerated(0.07)	deleterious(0.688)	NULL
MECR	51102	genome.wustl.edu	37	1	29527028	29527028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016011.2	-1	validated	p.A277V	1.000	53	0%	25	28%	34	52.9%	benign(0.151)	tolerated(0.25)	neutral(0.050)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
PTPRU	10076	genome.wustl.edu	37	1	29602075	29602075	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.S420	1.000	117	0%	53	32.1%	18	33.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PUM1	9698	genome.wustl.edu	37	1	31465333	31465333	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.G354	1.000	569	0%	339	24.5%	40	47.5%	-	-	-	NULL
SERINC2	347735	genome.wustl.edu	37	1	31902323	31902323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178865.3	+1	validated	p.Q317H	0.996	45	0%	25	36%	973	45%	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMPfam_Serinc
COL16A1	1307	genome.wustl.edu	37	1	32145243	32145243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.P921H	1.000	107	0%	63	38.1%	4	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Collagen
BAI2	576	genome.wustl.edu	37	1	32198155	32198155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001703.2	-1	reviewed	p.S1228F	1.000	26	0%	13	30.8%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAI2	576	genome.wustl.edu	37	1	32210249	32210249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001703.2	-1	reviewed	p.G308C	1.000	55	0%	27	29.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_TSP-1 type 1 repeat
SPOCD1	90853	genome.wustl.edu	37	1	32262245	32262245	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452755	-1	known	p.A138V	0.078	204	0%	106	26.4%	0	-	-	-	-	NULL
SPOCD1	90853	genome.wustl.edu	37	1	32280068	32280068	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144569.4	-1	provisional	p.P289	0.000	39	0%	26	19.2%	0	-	-	-	-	NULL
TMEM39B	55116	genome.wustl.edu	37	1	32542820	32542820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018056.2	+1	validated	p.R164H	1.000	590	0%	281	23.8%	18	22.2%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMPfam_Tmp39
EIF3I	8668	genome.wustl.edu	37	1	32696725	32696725	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003757.2	+1	validated	p.S302	0.902	112	0%	46	28.3%	291	33.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HDAC1	3065	genome.wustl.edu	37	1	32796216	32796216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004964.2	+1	reviewed	p.A256V	1.000	353	0%	170	25.3%	148	40.5%	benign(0.296)	tolerated(0.06)	neutral(0.414)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
TSSK3	81629	genome.wustl.edu	37	1	32829804	32829804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052841.3	+1	reviewed	p.L252I	0.988	459	0%	167	25.1%	4	50%	benign(0.028)	tolerated(0.26)	neutral(0.036)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZBTB8A	653121	genome.wustl.edu	37	1	33065775	33065775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040441.1	+1	validated	p.R361C	1.000	102	0%	71	23.9%	23	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YARS	8565	genome.wustl.edu	37	1	33245861	33245861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003680.3	-1	reviewed	p.L387M	1.000	221	0%	121	28.1%	151	47%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_tRNA_bind,superfamily_Nucleic acid-binding proteins
YARS	8565	genome.wustl.edu	37	1	33251993	33251993	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003680.3	-1	reviewed	p.Y292	0.997	64	0%	45	11.1%	138	25.3%	-	-	-	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
S100PBP	64766	genome.wustl.edu	37	1	33291820	33291820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022753.2	+1	validated	p.E40D	0.974	511	0%	234	23.9%	14	35.7%	benign(0.019)	tolerated(0.4)	neutral(0.017)	NULL
ADC	113451	genome.wustl.edu	37	1	33583584	33583584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052998.2	+1	validated	p.L371M	1.000	154	0%	67	34.3%	2	0%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	HMMPfam_Orn_DAP_Arg_deC,superfamily_Alanine racemase C-terminal domain-like
TRIM62	55223	genome.wustl.edu	37	1	33613209	33613209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018207.2	-1	validated	p.R333C	1.000	49	0%	25	28%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00589
ZNF362	149076	genome.wustl.edu	37	1	33745955	33745955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152493.2	+1	validated	p.R194C	1.000	52	0%	25	32%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF362	149076	genome.wustl.edu	37	1	33760820	33760820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152493.2	+1	validated	p.A354T	1.000	86	0%	37	16.2%	14	35.7%	possibly_damaging(0.893)	deleterious(0.05)	deleterious(0.698)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PHC2	1912	genome.wustl.edu	37	1	33790542	33790542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198040.2	-1	reviewed	p.L834P	1.000	45	0%	35	25.7%	91	37.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
ZSCAN20	7579	genome.wustl.edu	37	1	33956669	33956669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145238.3	+1	validated	p.G271*	1.000	235	0%	113	21.2%	0	-	-	-	-	NULL
ZSCAN20	7579	genome.wustl.edu	37	1	33957215	33957215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145238.3	+1	validated	p.D453Y	0.995	212	0%	122	30.3%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
CSMD2	114784	genome.wustl.edu	37	1	34123658	34123658	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.D1405	1.000	371	0%	173	32.9%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34204904	34204904	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.G695	0.042	136	0%	78	37.2%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD2	114784	genome.wustl.edu	37	1	34258060	34258060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.G465D	1.000	303	0.3%	163	30.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
HMGB4	127540	genome.wustl.edu	37	1	34330349	34330349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145205.4	+1	validated	p.S186N	0.000	69	0%	34	35.3%	0	-	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	NULL
GJB5	2709	genome.wustl.edu	37	1	35223654	35223654	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005268.2	+1	provisional	p.D241	0.000	128	0%	60	31.7%	0	-	-	-	-	NULL
GJB4	127534	genome.wustl.edu	37	1	35227083	35227083	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153212.2	+1	reviewed	p.L76	1.000	99	0%	47	27.7%	0	-	-	-	-	HMMPfam_Connexin
DLGAP3	58512	genome.wustl.edu	37	1	35350603	35350603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080418.1	-1	provisional	p.G659D	1.000	100	0%	43	27.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_GKAP
ZMYM6	9204	genome.wustl.edu	37	1	35476499	35476499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007167.3	-1	validated	p.I401V	0.002	157	0.6%	82	28%	7	42.8%	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
ZMYM1	79830	genome.wustl.edu	37	1	35580805	35580805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024772.3	+1	validated	p.P1125H	1.000	157	0%	84	14.3%	12	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZMYM4	9202	genome.wustl.edu	37	1	35871034	35871034	+	Missense_Mutation	SNP	C	C	T	rs147649051	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005095.2	+1	validated	p.A1254V	0.000	229	0%	156	28.2%	60	41.6%	benign(0.013)	tolerated(0.1)	neutral(0.287)	NULL
KIAA0319L	79932	genome.wustl.edu	37	1	35915604	35915604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024874.4	-1	reviewed	p.E739D	0.997	218	0%	126	27.8%	42	28.5%	benign(0.038)	tolerated(0.91)	neutral(0.002)	HMMSmart_SM00089,superfamily_PKD domain
NCDN	23154	genome.wustl.edu	37	1	36028035	36028035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014839.1	+1	reviewed	p.V396M	0.998	81	0%	45	22.2%	45	42.2%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Neurochondrin
PSMB2	5690	genome.wustl.edu	37	1	36101917	36101917	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002794.3	-1	reviewed	p.R70*	1.000	179	0.6%	107	30.8%	207	1.9%	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
CLSPN	63967	genome.wustl.edu	37	1	36202590	36202590	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.R1278	1.000	439	0.2%	262	32.4%	8	62.5%	-	-	-	NULL
CLSPN	63967	genome.wustl.edu	37	1	36230104	36230104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.M115I	0.000	203	0%	122	25.4%	4	25%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36474546	36474546	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024852.2	+1	reviewed	p.A310	0.919	113	0%	78	21.8%	6	50%	-	-	-	HMMPfam_PAZ,superfamily_SSF101690
THRAP3	9967	genome.wustl.edu	37	1	36755112	36755112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R498G	1.000	420	0%	265	25.3%	56	66%	probably_damaging(0.969)	tolerated(0.05)	deleterious(0.757)	NULL
LSM10	84967	genome.wustl.edu	37	1	36859391	36859391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032881.1	-1	provisional	p.R114W	1.000	83	0%	44	29.5%	75	38.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CSF3R	1441	genome.wustl.edu	37	1	36933248	36933248	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.G623	0.002	104	0%	65	13.8%	3	66.6%	-	-	-	superfamily_FN_III-like
CSF3R	1441	genome.wustl.edu	37	1	36938141	36938141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.R274C	0.009	130	0%	69	14.5%	3	0%	benign(0.044)	tolerated(0.2)	neutral(0.052)	HMMSmart_FN3,superfamily_FN_III-like
CSF3R	1441	genome.wustl.edu	37	1	36941192	36941192	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.K49	0.000	88	0%	46	30.4%	2	0%	-	-	-	superfamily_FN_III-like,HMMPfam_Lep_receptor_Ig
GRIK3	2899	genome.wustl.edu	37	1	37356573	37356573	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000831.3	-1	reviewed	p.T80	0.999	455	0%	285	34.7%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ZC3H12A	80149	genome.wustl.edu	37	1	37947263	37947263	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025079.2	+1	validated	p.R215	0.000	119	0%	37	35.1%	5	60%	-	-	-	NULL
ZC3H12A	80149	genome.wustl.edu	37	1	37947286	37947286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025079.2	+1	validated	p.C223Y	1.000	112	0%	40	35%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CDCA8	55143	genome.wustl.edu	37	1	38161615	38161615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018101.2	+1	validated	p.A86V	1.000	71	0%	24	33.3%	21	52.3%	benign(0.323)	deleterious(0.05)	neutral(0.447)	HMMPfam_Borealin
CDCA8	55143	genome.wustl.edu	37	1	38173997	38173997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018101.2	+1	validated	p.R268C	0.978	213	0.5%	116	34.5%	31	51.6%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Borealin
EPHA10	284656	genome.wustl.edu	37	1	38227435	38227435	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099439.1	-1	validated	p.G164	0.956	60	1.7%	36	16.7%	0	-	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
MTF1	4520	genome.wustl.edu	37	1	38300838	38300838	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005955.2	-1	reviewed	p.S301	1.000	453	0%	260	27.7%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SF3A3	10946	genome.wustl.edu	37	1	38433800	38433800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006802.2	-1	reviewed	p.R430C	1.000	604	0%	335	29.3%	88	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340263	39340263	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030772.3	-1	provisional	p.N503T	0.473	168	0%	83	28.9%	1	0%	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
RHBDL2	54933	genome.wustl.edu	37	1	39384988	39384988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372985	-1	known	p.R33H	0.000	182	0%	106	22.6%	4	25%	benign(0.015)	-	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39723627	39723627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.R157H	1.000	618	0.2%	368	22.8%	2	50%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MACF1	23499	genome.wustl.edu	37	1	39748923	39748923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.A258D	1.000	198	0%	138	11.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MACF1	23499	genome.wustl.edu	37	1	39751304	39751304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012090.3	+1	reviewed	p.P466L	0.997	386	0.3%	215	12.6%	0	-	benign(0.201)	tolerated(0.06)	neutral(0.342)	NULL
MACF1	23499	genome.wustl.edu	37	1	39798289	39798289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.H450R	0.000	286	0%	148	12.8%	0	-	benign(0)	-	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39877575	39877575	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015038.1	+1	predicted	p.S546	1.000	273	0%	140	15%	1	0%	-	-	-	NULL
KIAA0754	643314	genome.wustl.edu	37	1	39878495	39878495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015038.1	+1	predicted	p.S853I	0.000	90	0%	51	19.6%	3	66.6%	unknown(0)	tolerated(0.11)	-	NULL
MACF1	23499	genome.wustl.edu	37	1	39907953	39907953	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372925	+1	known	p.P3248S	1.000	226	0%	111	31.5%	22	36.3%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MACF1	23499	genome.wustl.edu	37	1	39908483	39908483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.S4844I	1.000	98	0%	44	40.9%	20	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
BMP8A	353500	genome.wustl.edu	37	1	39991436	39991436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181809.3	+1	validated	p.R392H	1.000	149	0%	87	24.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_TGFB,superfamily_SSF57501
TRIT1	54802	genome.wustl.edu	37	1	40319712	40319712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017646.4	-1	validated	p.I115N	1.000	145	0%	136	22.8%	14	50%	possibly_damaging(0.844)	deleterious(0.01)	deleterious(0.729)	HMMPfam_IPPT,superfamily_P-loop containing nucleoside triphosphate hydrolases
RLF	6018	genome.wustl.edu	37	1	40704360	40704360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.R1329H	1.000	149	0.7%	98	12.2%	25	4%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF642	339559	genome.wustl.edu	37	1	40961603	40961603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198494.2	+1	validated	p.H485Y	1.000	254	0%	124	11.3%	1	0%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF684	127396	genome.wustl.edu	37	1	41007369	41007369	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152373.3	+1	validated	p.H75	0.000	88	0%	78	35.9%	1	0%	-	-	-	NULL
ZNF684	127396	genome.wustl.edu	37	1	41012550	41012550	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152373.3	+1	validated	p.K185N	0.107	263	0.4%	150	14.7%	1	0%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	superfamily_SSF57667
SCMH1	22955	genome.wustl.edu	37	1	41608672	41608672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031694.2	-1	validated	p.R87H	1.000	282	0.4%	208	16.8%	27	14.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
HIVEP3	59269	genome.wustl.edu	37	1	42047221	42047221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024503.3	-1	validated	p.S1083N	0.628	109	0%	48	10.4%	0	-	benign(0.141)	tolerated(0.32)	neutral(0.036)	NULL
LEPRE1	64175	genome.wustl.edu	37	1	43218241	43218241	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431412	-1	known	p.P88S	0.000	99	0%	57	24.6%	39	35.8%	-	-	-	NULL
TIE1	7075	genome.wustl.edu	37	1	43785165	43785165	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005424.2	+1	provisional	p.S1024	0.997	438	0%	227	23.8%	10	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
SZT2	23334	genome.wustl.edu	37	1	43892390	43892390	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.A174	0.991	42	0%	18	27.8%	1	100%	-	-	-	NULL
SZT2	23334	genome.wustl.edu	37	1	43900903	43900903	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.H1080	0.932	155	0%	86	30.2%	8	87.5%	-	-	-	NULL
SZT2	23334	genome.wustl.edu	37	1	43908492	43908492	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.E1819	1.000	354	0%	164	29.3%	10	0%	-	-	-	NULL
PTPRF	5792	genome.wustl.edu	37	1	44019259	44019259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.R63H	0.993	560	0.4%	254	30.3%	48	66.6%	possibly_damaging(0.881)	deleterious(0.03)	deleterious(0.708)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PTPRF	5792	genome.wustl.edu	37	1	44071074	44071074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.D1117N	0.544	70	0%	32	25%	89	48.3%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44072584	44072584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.V1268M	1.000	188	0%	80	33.8%	142	46.4%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44086880	44086880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.R1878C	1.000	44	0%	23	34.8%	251	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
KDM4A	9682	genome.wustl.edu	37	1	44134806	44134806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014663.2	+1	reviewed	p.R400Q	1.000	247	0.4%	158	29.1%	30	26.6%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	NULL
KDM4A	9682	genome.wustl.edu	37	1	44170028	44170028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014663.2	+1	reviewed	p.A1061V	1.000	166	0%	99	33.3%	44	43.1%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
IPO13	9670	genome.wustl.edu	37	1	44426861	44426861	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000483886	+1	known	NULL	1.000	415	0%	220	21.8%	58	36.2%	-	-	-	-
SLC6A9	6536	genome.wustl.edu	37	1	44466910	44466910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201649.2	-1	validated	p.L494M	1.000	297	0%	154	22.1%	21	33.3%	benign(0.149)	tolerated(0.27)	neutral(0.046)	HMMPfam_SNF
KLF17	128209	genome.wustl.edu	37	1	44595385	44595385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173484.3	+1	validated	p.G148S	0.000	213	0%	112	36.6%	0	-	benign(0)	tolerated(1)	-	NULL
TMEM53	79639	genome.wustl.edu	37	1	45120573	45120573	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024587.2	-1	provisional	p.R164	0.120	68	0%	34	20.6%	5	40%	-	-	-	HMMPfam_DUF829,superfamily_alpha/beta-Hydrolases
KIF2C	11004	genome.wustl.edu	37	1	45232557	45232557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006845.3	+1	validated	p.E677D	1.000	166	0%	105	30.5%	32	46.8%	benign(0.282)	tolerated(1)	neutral(0.086)	NULL
PLK3	1263	genome.wustl.edu	37	1	45268524	45268524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004073.2	+1	validated	p.V249A	1.000	83	0%	35	28.6%	16	43.7%	possibly_damaging(0.858)	tolerated(0.06)	deleterious(0.653)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EIF2B3	8891	genome.wustl.edu	37	1	45444096	45444096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020365.3	-1	reviewed	p.A62V	0.105	791	0%	473	30.4%	25	40%	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_Nucleotide-diphospho-sugar transferases
HECTD3	79654	genome.wustl.edu	37	1	45469742	45469742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024602.5	-1	validated	p.N779K	1.000	327	0%	151	12.6%	32	12.5%	benign(0.345)	tolerated(0.08)	neutral(0.409)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECTD3	79654	genome.wustl.edu	37	1	45475775	45475775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024602.5	-1	validated	p.W214C	1.000	182	0.5%	59	25.4%	22	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose-binding domain-like
MUTYH	4595	genome.wustl.edu	37	1	45798257	45798257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128425.1	-1	reviewed	p.A227T	0.992	180	0%	92	27.2%	14	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HhH-GPD,HMMSmart_SM00478,PatternScan_ENDONUCLEASE_III_2,superfamily_DNA-glycosylase
TOE1	114034	genome.wustl.edu	37	1	45809116	45809116	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025077.3	+1	validated	p.S425	0.000	172	0%	88	30.7%	27	55.5%	-	-	-	HMMPfam_CAF1
AKR1A1	10327	genome.wustl.edu	37	1	46035600	46035600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006066.2	+1	reviewed	p.P317L	1.000	197	0%	104	23.1%	266	22.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-linked oxidoreductase
CCDC17	149483	genome.wustl.edu	37	1	46087362	46087362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114938.1	-1	provisional	p.H346Y	0.004	50	0%	21	28.6%	0	-	benign(0.001)	tolerated(1)	-	NULL
TMEM69	51249	genome.wustl.edu	37	1	46159216	46159216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016486.3	+1	validated	p.T128N	1.000	435	0%	263	30.4%	66	42.4%	probably_damaging(0.991)	tolerated(0.2)	deleterious(0.493)	NULL
TMEM69	51249	genome.wustl.edu	37	1	46159231	46159231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016486.3	+1	validated	p.G133V	1.000	394	0%	237	33.8%	71	43.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
IPP	3652	genome.wustl.edu	37	1	46193313	46193313	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005897.2	-1	reviewed	p.Y346	0.988	243	0%	142	33.8%	16	31.2%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MAST2	23139	genome.wustl.edu	37	1	46488936	46488936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015112.2	+1	validated	p.T506I	1.000	232	0%	116	22.4%	18	50%	benign(0.028)	tolerated(0.25)	neutral(0.038)	superfamily_Protein kinase-like (PK-like)
MAST2	23139	genome.wustl.edu	37	1	46489460	46489460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015112.2	+1	validated	p.R530W	1.000	35	0%	23	21.7%	26	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAST2	23139	genome.wustl.edu	37	1	46495191	46495191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015112.2	+1	validated	p.L758I	1.000	93	0%	63	27%	15	53.3%	possibly_damaging(0.761)	tolerated(0.15)	deleterious(0.523)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRRC41	10489	genome.wustl.edu	37	1	46752007	46752007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006369.4	-1	validated	p.Q174H	1.000	422	0%	177	26.6%	95	44.2%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	NULL
UQCRH	7388	genome.wustl.edu	37	1	46774790	46774790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006004.2	+1	provisional	p.E24D	0.999	105	0%	66	19.7%	387	44.7%	benign(0.141)	tolerated(0.14)	neutral(0.262)	superfamily_Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
DMBX1	127343	genome.wustl.edu	37	1	46972828	46972828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147192.2	+1	reviewed	p.R49H	1.000	98	0%	39	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYP4Z1	199974	genome.wustl.edu	37	1	47571849	47571849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178134.2	+1	reviewed	p.L373I	0.956	694	0%	388	18.3%	1	100%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_p450,superfamily_Cytochrome_P450
SLC5A9	200010	genome.wustl.edu	37	1	48695003	48695003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135181.1	+1	validated	p.V151I	0.996	220	0%	78	24.4%	0	-	possibly_damaging(0.696)	tolerated(0.24)	neutral(0.287)	HMMPfam_SSF
BEND5	79656	genome.wustl.edu	37	1	49224864	49224864	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024603.2	-1	validated	p.G151	1.000	53	1.9%	22	36.4%	1	0%	-	-	-	NULL
OSBPL9	114883	genome.wustl.edu	37	1	52237812	52237812	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148909.1	+1	reviewed	p.E347*	1.000	310	0%	212	29.2%	24	0%	-	-	-	NULL
NRD1	4898	genome.wustl.edu	37	1	52271224	52271224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002525.2	-1	validated	p.R775H	1.000	124	0%	95	30.5%	88	43.1%	possibly_damaging(0.658)	tolerated(0.49)	neutral(0.243)	superfamily_Metalloenz_metal-bd
NRD1	4898	genome.wustl.edu	37	1	52279717	52279717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002525.2	-1	validated	p.Y623C	1.000	149	0%	130	43.8%	71	39.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ORC1	4998	genome.wustl.edu	37	1	52849500	52849500	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004153.2	-1	reviewed	e11+2	1.000	98	0%	39	35.9%	0	-	-	-	-	-
PRPF38A	84950	genome.wustl.edu	37	1	52880495	52880495	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032864.3	+1	validated	p.R271*	1.000	148	0%	88	31.8%	54	27.7%	-	-	-	NULL
SCP2	6342	genome.wustl.edu	37	1	53453727	53453727	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002979.3	+1	reviewed	p.G334*	1.000	172	0%	112	25%	20	0%	-	-	-	HMMPfam_Thiolase_C,superfamily_Thiolase-like
MAGOH	4116	genome.wustl.edu	37	1	53699325	53699325	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002370.2	-1	reviewed	e3-1	1.000	434	0.5%	228	29.4%	1	100%	-	-	-	-
TMEM59	9528	genome.wustl.edu	37	1	54502309	54502309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004872.3	-1	provisional	p.A264S	1.000	191	0%	132	17.4%	266	22.9%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FAM151A	338094	genome.wustl.edu	37	1	55076124	55076124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176782.2	-1	validated	p.V349I	0.110	134	0%	69	27.5%	1	0%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
HEATR8	374977	genome.wustl.edu	37	1	55119443	55119443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039464.2	+1	validated	p.G282S	0.000	559	0%	358	29.3%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	NULL
PARS2	25973	genome.wustl.edu	37	1	55223923	55223923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152268.3	-1	validated	p.G304	1.000	415	0%	231	26.8%	6	33.3%	-	-	-	superfamily_Class II aaRS and biotin synthetases
TTC22	55001	genome.wustl.edu	37	1	55251777	55251777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114108.1	-1	validated	p.R300H	1.000	156	0%	58	22.4%	2	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
DHCR24	1718	genome.wustl.edu	37	1	55317925	55317925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014762.3	-1	reviewed	p.C511Y	1.000	138	0%	73	17.8%	122	19.6%	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	NULL
DHCR24	1718	genome.wustl.edu	37	1	55337260	55337260	+	Silent	SNP	G	G	A	rs143779194	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014762.3	-1	reviewed	p.A213	0.062	87	0%	48	39.6%	164	45.7%	-	-	-	superfamily_FAD-binding_2
DHCR24	1718	genome.wustl.edu	37	1	55349335	55349335	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014762.3	-1	reviewed	p.M115L	1.000	466	0%	264	24.2%	144	44.4%	benign(0.001)	tolerated(0.71)	neutral(0.002)	HMMPfam_FAD_binding_4,superfamily_FAD-binding_2
DHCR24	1718	genome.wustl.edu	37	1	55349443	55349443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014762.3	-1	reviewed	p.R79W	1.000	220	0%	115	25.2%	151	43.7%	unknown(0)	deleterious(0)	-	superfamily_FAD-binding_2
USP24	23358	genome.wustl.edu	37	1	55544309	55544309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.R2246W	1.000	119	0%	81	39.5%	9	22.2%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
USP24	23358	genome.wustl.edu	37	1	55627938	55627938	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	e7-1	1.000	80	0%	63	30.2%	0	-	-	-	-	-
USP24	23358	genome.wustl.edu	37	1	55638130	55638130	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.L96	0.989	271	0%	197	10.2%	0	-	-	-	-	NULL
PRKAA2	5563	genome.wustl.edu	37	1	57140117	57140117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006252.3	+1	validated	p.R53H	1.000	450	0%	429	29.1%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKAA2	5563	genome.wustl.edu	37	1	57161618	57161618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006252.3	+1	validated	p.G192C	1.000	673	0.1%	430	13.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKAA2	5563	genome.wustl.edu	37	1	57169985	57169985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006252.3	+1	validated	p.S377I	1.000	270	0%	143	14%	0	-	benign(0.281)	tolerated(0.12)	neutral(0.347)	superfamily_Kinase_like
DAB1	1600	genome.wustl.edu	37	1	57491682	57491682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021080.3	-1	reviewed	p.S253Y	1.000	359	0%	198	31.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
HOOK1	51361	genome.wustl.edu	37	1	60331601	60331601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.A601V	1.000	282	0%	214	24.3%	9	55.5%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	HMMPfam_HOOK,superfamily_Prefoldin
C1orf87	127795	genome.wustl.edu	37	1	60456478	60456478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152377.1	-1	predicted	p.R503H	1.000	820	0%	629	13%	1	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62675733	62675733	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.A429	0.017	245	0.8%	130	37.7%	0	-	-	-	-	NULL
KANK4	163782	genome.wustl.edu	37	1	62734111	62734111	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.S693	0.000	96	0%	40	32.5%	0	-	-	-	-	NULL
KANK4	163782	genome.wustl.edu	37	1	62737155	62737155	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181712.4	-1	validated	p.N669	1.000	253	0%	155	21.9%	0	-	-	-	-	NULL
USP1	7398	genome.wustl.edu	37	1	62910447	62910447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017415.1	+1	reviewed	p.D199A	1.000	177	0%	117	19.7%	32	43.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
DOCK7	85440	genome.wustl.edu	37	1	62971361	62971361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.V1504I	1.000	323	0%	199	27.1%	19	52.6%	possibly_damaging(0.646)	tolerated(0.68)	neutral(0.229)	NULL
ALG6	29929	genome.wustl.edu	37	1	63879817	63879817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013339.3	+1	reviewed	p.S301I	1.000	160	0%	129	27.1%	17	0%	possibly_damaging(0.904)	tolerated(0.05)	deleterious(0.704)	HMMPfam_Alg6_Alg8
EFCAB7	84455	genome.wustl.edu	37	1	64021087	64021087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032437.2	+1	validated	p.T372I	1.000	299	0%	198	27.8%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROR1	4919	genome.wustl.edu	37	1	64643144	64643144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005012.2	+1	validated	p.R474C	1.000	631	0.3%	361	33%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CACHD1	57685	genome.wustl.edu	37	1	65129452	65129452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.R625C	1.000	265	0%	154	27.9%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CACHD1	57685	genome.wustl.edu	37	1	65157173	65157173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020925.2	+1	validated	p.H1201N	1.000	233	0%	139	35.3%	10	50%	possibly_damaging(0.444)	tolerated(0.07)	neutral(0.464)	NULL
JAK1	3716	genome.wustl.edu	37	1	65321199	65321199	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.K547	1.000	27	0%	13	38.5%	14	14.2%	-	-	-	superfamily_SSF55550
JAK1	3716	genome.wustl.edu	37	1	65332777	65332777	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.K254	1.000	630	0%	332	23.2%	4	0%	-	-	-	HMMSmart_B41
DNAJC6	9829	genome.wustl.edu	37	1	65858261	65858261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014787.2	+1	validated	p.S482N	0.982	134	0%	63	36.5%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
PDE4B	5142	genome.wustl.edu	37	1	66829177	66829177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037341.1	+1	reviewed	p.V403M	1.000	120	0%	94	26.6%	13	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE4B	5142	genome.wustl.edu	37	1	66833501	66833501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037341.1	+1	reviewed	p.R503C	1.000	573	0%	414	28%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
SGIP1	84251	genome.wustl.edu	37	1	67160159	67160159	+	Silent	SNP	G	G	A	rs144911780	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371039	+1	known	p.S337	1.000	71	0%	38	26.3%	0	-	-	-	-	NULL
SGIP1	84251	genome.wustl.edu	37	1	67205069	67205069	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.R695*	1.000	59	0%	28	25%	0	-	-	-	-	NULL
SGIP1	84251	genome.wustl.edu	37	1	67205130	67205130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.T715M	0.995	87	0%	21	33.3%	1	0%	possibly_damaging(0.456)	deleterious(0.03)	deleterious(0.514)	NULL
SGIP1	84251	genome.wustl.edu	37	1	67207114	67207114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.A820V	1.000	111	0%	85	32.9%	0	-	possibly_damaging(0.515)	tolerated(0.43)	neutral(0.187)	NULL
INSL5	10022	genome.wustl.edu	37	1	67266858	67266858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005478.3	-1	reviewed	p.A16V	0.048	212	0%	143	28.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Insulin-like
SLC35D1	23169	genome.wustl.edu	37	1	67474823	67474823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015139.2	-1	reviewed	p.V302I	1.000	137	0%	83	21.7%	3	66.6%	benign(0.006)	tolerated(0.45)	neutral(0.012)	HMMPfam_TPT
IL23R	149233	genome.wustl.edu	37	1	67635098	67635098	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144701.2	+1	reviewed	p.I48	0.990	413	0%	306	27.8%	0	-	-	-	-	NULL
IL12RB2	3595	genome.wustl.edu	37	1	67804310	67804310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001559.2	+1	reviewed	p.P321H	0.991	188	0%	120	35.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
DIRAS3	9077	genome.wustl.edu	37	1	68512659	68512659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004675.2	-1	reviewed	p.R108W	1.000	180	0.6%	76	35.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
DIRAS3	9077	genome.wustl.edu	37	1	68512867	68512867	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004675.2	-1	reviewed	p.Y38	0.998	107	0%	46	21.7%	1	0%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPE65	6121	genome.wustl.edu	37	1	68897259	68897259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000329.2	-1	reviewed	p.G380C	1.000	130	0%	73	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RPE65
RPE65	6121	genome.wustl.edu	37	1	68912477	68912477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000329.2	-1	reviewed	p.S54F	0.992	128	0%	82	29.3%	0	-	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_RPE65
ANKRD13C	81573	genome.wustl.edu	37	1	70736557	70736557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030816.4	-1	validated	p.G493C	1.000	267	0%	141	26.2%	24	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FPGT	8790	genome.wustl.edu	37	1	74671308	74671308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003838.2	+1	reviewed	p.R526H	1.000	245	0.4%	148	32.4%	16	68.7%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_Fucokinase
TNNI3K	51086	genome.wustl.edu	37	1	74929222	74929222	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112808.1	+1	validated	p.N804	0.973	214	0%	144	31.9%	3	33.3%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C1orf173	127254	genome.wustl.edu	37	1	75097582	75097582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002912.4	-1	validated	p.S212T	0.012	573	0%	439	30.8%	7	71.4%	benign(0.032)	tolerated(0.5)	neutral(0.011)	NULL
CRYZ	1429	genome.wustl.edu	37	1	75190414	75190414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130042.1	-1	reviewed	p.P31L	0.977	365	0.5%	239	29.3%	43	48.8%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	superfamily_GroES_like
MSH4	4438	genome.wustl.edu	37	1	76262679	76262679	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.R3	0.194	107	0%	66	34.8%	0	-	-	-	-	NULL
MSH4	4438	genome.wustl.edu	37	1	76276428	76276428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.S212L	1.000	198	0%	135	20.7%	0	-	possibly_damaging(0.878)	tolerated(0.18)	neutral(0.398)	HMMPfam_MutS_II,superfamily_DNA_mismatch_repair_MutS_connt
MSH4	4438	genome.wustl.edu	37	1	76342662	76342662	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002440.2	+1	validated	p.Y449*	0.988	108	0%	93	24.7%	0	-	-	-	-	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
ASB17	127247	genome.wustl.edu	37	1	76387786	76387786	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080868.2	-1	validated	p.V220	0.740	134	0%	77	23.4%	0	-	-	-	-	NULL
ASB17	127247	genome.wustl.edu	37	1	76397772	76397772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080868.2	-1	validated	p.D69Y	1.000	365	0%	213	31.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ST6GALNAC3	256435	genome.wustl.edu	37	1	76779497	76779497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152996.2	+1	validated	p.S9Y	0.990	229	0.4%	161	13.7%	1	0%	benign(0.345)	tolerated(0.05)	neutral(0.454)	NULL
ST6GALNAC3	256435	genome.wustl.edu	37	1	76779637	76779637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152996.2	+1	validated	p.R56W	1.000	217	0%	121	22.3%	1	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Glyco_transf_29
ST6GALNAC3	256435	genome.wustl.edu	37	1	77093186	77093186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152996.2	+1	validated	p.A225T	1.000	514	0%	301	23.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Glyco_transf_29
ST6GALNAC5	81849	genome.wustl.edu	37	1	77510148	77510148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030965.1	+1	provisional	p.S174I	1.000	184	0%	79	31.6%	0	-	probably_damaging(0.961)	tolerated(0.15)	deleterious(0.645)	HMMPfam_Glyco_transf_29
ST6GALNAC5	81849	genome.wustl.edu	37	1	77528735	77528735	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030965.1	+1	provisional	p.S285	0.993	379	0%	266	32%	1	0%	-	-	-	HMMPfam_Glyco_transf_29
NEXN	91624	genome.wustl.edu	37	1	78392196	78392196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144573.3	+1	reviewed	p.R196H	0.203	321	0%	207	28.5%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ELTD1	64123	genome.wustl.edu	37	1	79412080	79412080	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022159.3	-1	validated	p.S68	1.000	102	0%	73	13.7%	0	-	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
LPHN2	23266	genome.wustl.edu	37	1	82372776	82372776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012302.2	+1	reviewed	p.R50*	0.996	297	0%	236	32.2%	14	21.4%	-	-	-	HMMPfam_Gal_Lectin
TTLL7	79739	genome.wustl.edu	37	1	84372134	84372134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024686.4	-1	validated	p.R669W	0.976	224	0%	191	24.6%	2	50%	probably_damaging(0.971)	deleterious(0.04)	deleterious(0.762)	NULL
PRKACB	5567	genome.wustl.edu	37	1	84650820	84650820	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182948.2	+1	reviewed	p.P172H	1.000	262	0%	220	26.4%	10	0%	possibly_damaging(0.867)	tolerated(0.07)	deleterious(0.655)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RPF1	80135	genome.wustl.edu	37	1	84961117	84961117	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025065.6	+1	validated	p.V226	1.000	93	0%	49	24.5%	45	28.8%	-	-	-	HMMPfam_Brix
CTBS	1486	genome.wustl.edu	37	1	85035673	85035673	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004388.2	-1	validated	p.L156I	1.000	83	0%	52	17.3%	7	14.2%	possibly_damaging(0.696)	deleterious(0.03)	deleterious(0.614)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
MCOLN3	55283	genome.wustl.edu	37	1	85498580	85498580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018298.9	-1	validated	p.L204M	1.000	1335	0%	782	29.3%	0	-	benign(0.396)	tolerated(0.23)	neutral(0.169)	NULL
WDR63	126820	genome.wustl.edu	37	1	85592266	85592266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145172.3	+1	validated	p.G729R	0.996	195	0%	142	39.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_WD40 repeat-like
SYDE2	84144	genome.wustl.edu	37	1	85656288	85656288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.P298H	0.030	358	0.3%	246	31.3%	3	0%	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
DDAH1	23576	genome.wustl.edu	37	1	85787231	85787231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012137.3	-1	reviewed	p.D254E	1.000	255	0%	118	10.2%	61	8.1%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Amidinotransf,superfamily_Pentein
ZNHIT6	54680	genome.wustl.edu	37	1	86172137	86172137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017953.3	-1	validated	p.R237Q	0.920	471	0.4%	291	26.5%	22	50%	possibly_damaging(0.948)	tolerated(0.38)	neutral(0.409)	HMMPfam_zf-HIT
COL24A1	255631	genome.wustl.edu	37	1	86591399	86591399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.S207N	1.000	196	0%	146	25.3%	0	-	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CLCA1	1179	genome.wustl.edu	37	1	86934716	86934716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001285.3	+1	reviewed	p.S21I	0.688	573	0.2%	366	29.5%	0	-	probably_damaging(0.968)	tolerated(0.09)	deleterious(0.706)	HMMPfam_CLCA_N
CLCA1	1179	genome.wustl.edu	37	1	86954765	86954765	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001285.3	+1	reviewed	p.N423	0.000	203	0%	128	30.5%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PKN2	5586	genome.wustl.edu	37	1	89294193	89294193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006256.2	+1	validated	p.F817I	1.000	169	0%	121	15.7%	20	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GBP3	2635	genome.wustl.edu	37	1	89480264	89480264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018284.2	-1	reviewed	p.G132R	1.000	241	0%	126	28.6%	31	22.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
GBP1	2633	genome.wustl.edu	37	1	89519075	89519075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002053.2	-1	validated	p.T581M	0.000	226	0%	105	26.7%	28	3.5%	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP2	2634	genome.wustl.edu	37	1	89583361	89583361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004120.3	-1	reviewed	p.A175V	0.007	155	0%	103	34%	25	0%	benign(0.018)	deleterious(0.01)	neutral(0.406)	HMMPfam_GBP,superfamily_SSF52540
ENSG00000225492	0	genome.wustl.edu	37	1	89885878	89885878	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513638	+1	known	NULL	1.000	266	0%	122	10.7%	0	-	-	-	-	-
LRRC8C	84230	genome.wustl.edu	37	1	90180174	90180174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032270.4	+1	validated	p.C682Y	1.000	190	0%	114	28.1%	9	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90399676	90399676	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.E350A	0.652	268	0%	172	29.1%	21	38%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
LRRC8D	55144	genome.wustl.edu	37	1	90400492	90400492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.G622D	1.000	204	0%	107	35.5%	32	56.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_SSF52058
ZNF326	284695	genome.wustl.edu	37	1	90470742	90470742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182976.2	+1	validated	p.D50Y	1.000	321	0%	176	34.1%	12	16.6%	possibly_damaging(0.934)	deleterious(0.04)	deleterious(0.729)	NULL
ZNF326	284695	genome.wustl.edu	37	1	90472966	90472966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182976.2	+1	validated	p.S91F	1.000	376	0%	218	27.1%	8	62.5%	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	NULL
ZNF644	84146	genome.wustl.edu	37	1	91403877	91403877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.H1012Y	1.000	425	0.2%	327	26.9%	15	53.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92195464	92195464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003243.3	-1	validated	p.Y212C	1.000	421	0%	237	29.1%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
GLMN	11146	genome.wustl.edu	37	1	92763552	92763552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053274.2	-1	reviewed	p.A2V	1.000	53	0%	35	20%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EVI5	7813	genome.wustl.edu	37	1	93159856	93159856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005665.4	-1	validated	p.Q377H	1.000	174	0%	109	27.5%	9	55.5%	possibly_damaging(0.945)	deleterious(0.03)	deleterious(0.754)	superfamily_Ypt/Rab-GAP domain of gyp1p
CCDC18	343099	genome.wustl.edu	37	1	93721923	93721923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206886.2	+1	validated	p.T1243I	0.943	436	0%	288	16.3%	1	0%	benign(0.244)	tolerated(0.09)	neutral(0.321)	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94342418	94342418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014597.3	-1	provisional	p.A358V	0.003	390	0%	248	31.9%	59	45.7%	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	NULL
DNTTIP2	30836	genome.wustl.edu	37	1	94343010	94343010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014597.3	-1	provisional	p.T161A	0.522	298	0%	149	28.2%	38	39.4%	possibly_damaging(0.725)	deleterious(0)	deleterious(0.708)	NULL
GCLM	2730	genome.wustl.edu	37	1	94362191	94362191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002061.2	-1	reviewed	p.L175M	1.000	406	0%	218	35.8%	40	35%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
ABCA4	24	genome.wustl.edu	37	1	94508378	94508378	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.T1089	0.998	175	0%	84	15.5%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
ABCA4	24	genome.wustl.edu	37	1	94586597	94586597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.G2D	1.000	105	0%	52	19.2%	0	-	possibly_damaging(0.623)	deleterious(0.01)	deleterious(0.623)	NULL
ARHGAP29	9411	genome.wustl.edu	37	1	94668168	94668168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.G359R	0.999	303	0%	142	33.8%	8	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC44A3	126969	genome.wustl.edu	37	1	95360465	95360465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114106.1	+1	validated	p.A650V	0.555	120	0%	72	25%	13	15.3%	benign(0.014)	tolerated(0.06)	neutral(0.323)	NULL
ALG14	199857	genome.wustl.edu	37	1	95538365	95538365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144988.3	-1	validated	p.D30	0.000	174	0%	98	10.2%	15	40%	-	-	-	NULL
LPPR4	9890	genome.wustl.edu	37	1	99772408	99772408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014839.4	+1	reviewed	p.E712K	0.990	192	0%	135	32.6%	0	-	possibly_damaging(0.496)	tolerated(0.15)	neutral(0.406)	NULL
AGL	178	genome.wustl.edu	37	1	100366418	100366418	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000028.2	+1	reviewed	e25+1	1.000	292	0%	173	32.4%	0	-	-	-	-	-
CCDC76	54482	genome.wustl.edu	37	1	100605243	100605243	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019083.2	+1	validated	p.D100	1.000	133	0%	70	14.3%	8	25%	-	-	-	NULL
LRRC39	127495	genome.wustl.edu	37	1	100620716	100620716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144620.2	-1	provisional	p.T235A	0.993	165	0%	116	12.1%	2	50%	benign(0.428)	tolerated(0.07)	neutral(0.458)	HMMSmart_SM00369,superfamily_L domain-like
DPH5	51611	genome.wustl.edu	37	1	101458270	101458270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077394.1	-1	reviewed	p.R186Q	0.983	292	0.3%	181	29.3%	54	29.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TP_methylase,superfamily_Tetrapyrrole methylase
OLFM3	118427	genome.wustl.edu	37	1	102270459	102270459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058170.2	-1	validated	p.D238Y	1.000	211	0%	155	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OLF,HMMSmart_SM00284
OLFM3	118427	genome.wustl.edu	37	1	102290755	102290755	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058170.2	-1	validated	p.L140R	1.000	247	0%	107	15%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC100129138	100129138	genome.wustl.edu	37	1	104615882	104615882	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_036957.2	+1	model	NULL	0.005	82	0%	35	25.7%	0	-	-	-	-	-
FAM102B	284611	genome.wustl.edu	37	1	109171363	109171363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010883.2	+1	validated	p.A303T	1.000	245	0%	148	25.7%	8	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
FNDC7	163479	genome.wustl.edu	37	1	109270577	109270577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144937.1	+1	provisional	p.A420V	0.464	512	0.2%	274	32.8%	0	-	benign(0.343)	tolerated(0.55)	neutral(0.115)	HMMSmart_SM00060,superfamily_Fibronectin type III
KIAA1324	57535	genome.wustl.edu	37	1	109716148	109716148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020775.3	+1	validated	p.S250L	0.968	325	0%	173	37%	379	47.2%	possibly_damaging(0.839)	tolerated(0.32)	neutral(0.345)	superfamily_Growth factor receptor domain
KIAA1324	57535	genome.wustl.edu	37	1	109741257	109741257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020775.3	+1	validated	p.S821N	0.848	75	0%	41	19.5%	568	41.1%	benign(0.002)	tolerated(1)	-	superfamily_Mannose 6-phosphate receptor domain
CELSR2	1952	genome.wustl.edu	37	1	109794534	109794534	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.T611	0.445	61	0%	20	30%	10	50%	-	-	-	superfamily_Cadherin
CELSR2	1952	genome.wustl.edu	37	1	109795741	109795741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.L1014I	0.983	53	0%	23	30.4%	15	53.3%	benign(0.005)	tolerated(0.55)	neutral(0.007)	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
CELSR2	1952	genome.wustl.edu	37	1	109804151	109804151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.R1400C	1.000	135	0%	47	14.9%	12	8.3%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
CELSR2	1952	genome.wustl.edu	37	1	109811341	109811341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001408.2	+1	reviewed	p.R2153W	1.000	89	0%	34	20.6%	22	18.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PSRC1	84722	genome.wustl.edu	37	1	109823732	109823732	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005290.3	-1	reviewed	p.R221	0.100	27	0%	12	41.7%	7	28.5%	-	-	-	NULL
MYBPHL	343263	genome.wustl.edu	37	1	109840097	109840097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010985.2	-1	validated	p.R126H	0.012	97	0%	53	34%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SYPL2	284612	genome.wustl.edu	37	1	110018265	110018265	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040709.1	+1	validated	p.V64	0.999	176	0%	85	27.1%	2	0%	-	-	-	HMMPfam_MARVEL
ATXN7L2	127002	genome.wustl.edu	37	1	110033851	110033851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153340.4	+1	validated	p.S556P	0.617	81	0%	34	17.6%	8	62.5%	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
GSTM4	2948	genome.wustl.edu	37	1	110198933	110198933	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024538.1	+1	reviewed	NULL	0.000	41	0%	25	28%	0	-	-	-	-	-
GSTM5	2949	genome.wustl.edu	37	1	110257640	110257640	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000851.3	+1	reviewed	p.K144	1.000	252	0%	126	24.6%	3	0%	-	-	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
EPS8L3	79574	genome.wustl.edu	37	1	110301935	110301935	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139053.1	-1	reviewed	p.S110	0.781	107	0%	52	32.7%	0	-	-	-	-	HMMPfam_PTB
AHCYL1	10768	genome.wustl.edu	37	1	110527733	110527735	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006621.4	+1	validated	p.E21in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM40A	85369	genome.wustl.edu	37	1	110583267	110583267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033088.2	+1	validated	p.A198T	1.000	24	0%	12	33.3%	11	27.2%	probably_damaging(0.998)	tolerated(0.4)	deleterious(0.490)	HMMPfam_N1221
KCNC4	3749	genome.wustl.edu	37	1	110768708	110768708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004978.3	+1	reviewed	p.R576H	1.000	54	1.9%	24	54.2%	4	50%	probably_damaging(0.98)	tolerated(0.18)	deleterious(0.480)	NULL
RBM15	64783	genome.wustl.edu	37	1	110882497	110882497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022768.4	+1	validated	p.A157V	1.000	23	0%	13	46.2%	2	50%	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
CHIA	27159	genome.wustl.edu	37	1	111860387	111860387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201653.2	+1	validated	p.S189P	1.000	273	0%	197	27.9%	0	-	benign(0.028)	tolerated(0.24)	neutral(0.039)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
ATP5F1	515	genome.wustl.edu	37	1	111999277	111999277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001688.4	+1	reviewed	p.A138V	0.959	281	0%	147	15%	434	25.8%	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_Mt_ATP-synt_B
ATP5F1	515	genome.wustl.edu	37	1	112003549	112003549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001688.4	+1	reviewed	p.T235I	1.000	225	0%	138	12.3%	384	14.3%	benign(0.156)	deleterious(0)	neutral(0.459)	HMMPfam_Mt_ATP-synt_B
DDX20	11218	genome.wustl.edu	37	1	112308658	112308658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007204.4	+1	reviewed	p.C538R	0.000	556	0%	304	28.3%	33	54.5%	possibly_damaging(0.694)	deleterious(0)	deleterious(0.694)	NULL
KCND3	3752	genome.wustl.edu	37	1	112524653	112524653	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004980.3	-1	reviewed	p.A232	0.980	44	0%	22	18.2%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CTTNBP2NL	55917	genome.wustl.edu	37	1	112998951	112998951	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018704.2	+1	validated	p.A279	0.017	725	0%	416	18%	12	16.6%	-	-	-	HMMPfam_CortBP2
CTTNBP2NL	55917	genome.wustl.edu	37	1	112999421	112999421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018704.2	+1	validated	p.R436H	0.998	824	0%	524	17.9%	12	16.6%	probably_damaging(0.999)	tolerated(0.4)	deleterious(0.506)	HMMPfam_CortBP2
SLC16A1	6566	genome.wustl.edu	37	1	113464672	113464672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003051.3	-1	reviewed	p.I101V	1.000	231	0%	155	13.5%	56	12.5%	benign(0.006)	tolerated(0.97)	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
LRIG2	9860	genome.wustl.edu	37	1	113655143	113655143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014813.1	+1	provisional	p.R614H	1.000	228	0.4%	136	34.6%	6	66.6%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LRIG2	9860	genome.wustl.edu	37	1	113655146	113655146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014813.1	+1	provisional	p.T615I	1.000	229	0%	138	15.9%	7	14.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
RSBN1	54665	genome.wustl.edu	37	1	114309815	114309815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018364.3	-1	validated	p.R614H	1.000	109	0%	47	31.9%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AP4B1	10717	genome.wustl.edu	37	1	114438612	114438612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006594.2	-1	validated	p.R520H	1.000	230	0%	135	28.9%	24	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
DCLRE1B	64858	genome.wustl.edu	37	1	114449735	114449735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022836.3	+1	validated	p.S103P	0.978	361	0.3%	233	13.7%	9	11.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Lactamase_B,superfamily_SSF56281
DCLRE1B	64858	genome.wustl.edu	37	1	114453944	114453944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022836.3	+1	validated	p.R244C	0.031	201	0%	147	24.5%	11	45.4%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	HMMPfam_DRMBL
HIPK1	204851	genome.wustl.edu	37	1	114483537	114483537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.V178I	1.000	517	0%	331	17.2%	8	37.5%	possibly_damaging(0.869)	tolerated(0.09)	deleterious(0.633)	superfamily_Protein kinase-like (PK-like)
HIPK1	204851	genome.wustl.edu	37	1	114505013	114505013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198268.1	+1	reviewed	p.A686S	1.000	239	0.4%	135	28.9%	22	50%	possibly_damaging(0.944)	tolerated(0.07)	deleterious(0.708)	NULL
SYT6	148281	genome.wustl.edu	37	1	114680226	114680226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205848.2	-1	validated	p.R236H	1.000	115	0%	53	18.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SYT6	148281	genome.wustl.edu	37	1	114682236	114682236	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205848.2	-1	validated	e1+1	1.000	42	0%	25	16%	0	-	-	-	-	-
TRIM33	51592	genome.wustl.edu	37	1	114940421	114940421	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448034	-1	known	p.Q839*	1.000	435	0%	308	28.9%	17	47%	benign(0.073)	tolerated(0.13)	neutral(0.258)	HMMSmart_SM00297,superfamily_Bromodomain
TRIM33	51592	genome.wustl.edu	37	1	115005829	115005829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015906.3	-1	reviewed	p.V274I	1.000	180	0%	87	36.8%	6	66.6%	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,superfamily_RING/U-box
BCAS2	10286	genome.wustl.edu	37	1	115113347	115113347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005872.2	-1	validated	p.H148	0.889	81	1.2%	38	34.2%	67	17.9%	-	-	-	HMMPfam_BCAS2
DENND2C	163259	genome.wustl.edu	37	1	115141977	115141977	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198459.3	-1	validated	p.D677G	1.000	222	0%	119	23.5%	1	0%	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMPfam_DENN,HMMSmart_DENN
DENND2C	163259	genome.wustl.edu	37	1	115168168	115168168	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198459.3	-1	validated	p.S146	0.864	409	0%	330	29.4%	1	0%	-	-	-	NULL
AMPD1	270	genome.wustl.edu	37	1	115226823	115226823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000036.2	-1	reviewed	p.P182T	1.000	306	0%	207	30%	0	-	benign(0.199)	tolerated(0.07)	neutral(0.338)	NULL
ATP1A1	476	genome.wustl.edu	37	1	116930052	116930052	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000701.7	+1	reviewed	p.I109S	0.992	352	0%	173	23.7%	116	1.7%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
ATP1A1	476	genome.wustl.edu	37	1	116933514	116933514	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000701.7	+1	reviewed	e10+1	1.000	226	0%	122	28.7%	0	-	-	-	-	-
IGSF3	3321	genome.wustl.edu	37	1	117131530	117131530	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001542.2	-1	validated	p.G762	1.000	412	0%	212	32.1%	9	22.2%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CD101	9398	genome.wustl.edu	37	1	117561138	117561138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004258.3	+1	validated	p.A658D	0.854	233	0%	167	25.7%	3	33.3%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMSmart_IG
CD101	9398	genome.wustl.edu	37	1	117576518	117576518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004258.3	+1	validated	p.P954H	0.000	865	0%	521	26.9%	5	40%	possibly_damaging(0.845)	deleterious(0.02)	deleterious(0.707)	NULL
TTF2	8458	genome.wustl.edu	37	1	117631596	117631596	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003594.3	+1	reviewed	p.S778	0.385	275	0%	147	23.8%	11	63.6%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM45	80263	genome.wustl.edu	37	1	117661185	117661185	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025188.3	-1	reviewed	p.I231	0.996	306	0%	142	27.5%	16	62.5%	-	-	-	NULL
TRIM45	80263	genome.wustl.edu	37	1	117663431	117663431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025188.3	-1	reviewed	p.Q131H	1.000	234	0%	109	24.8%	12	75%	benign(0.017)	tolerated(0.12)	neutral(0.261)	HMMPfam_zf-B_box,HMMSmart_SM00336
WDR3	10885	genome.wustl.edu	37	1	118482167	118482167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006784.2	+1	reviewed	p.R216M	1.000	687	0.3%	385	25.2%	24	20.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
SPAG17	200162	genome.wustl.edu	37	1	118548126	118548126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.R1563C	0.082	374	0%	283	30.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118554967	118554967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.V1439D	0.019	341	0%	316	29.4%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118693896	118693896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.R62C	0.971	191	0%	107	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBX15	6913	genome.wustl.edu	37	1	119427470	119427470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152380.2	-1	reviewed	p.S459I	1.000	114	0%	72	29.2%	0	-	benign(0.138)	deleterious(0.01)	neutral(0.417)	NULL
HSD3B2	3284	genome.wustl.edu	37	1	119964862	119964862	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000198.3	+1	reviewed	p.P246	0.000	152	0%	115	29.6%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-binding Rossmann-fold domains
PHGDH	26227	genome.wustl.edu	37	1	120254772	120254772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006623.3	+1	reviewed	p.A43S	0.934	60	0%	49	24.5%	114	56.1%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMPfam_2-Hacid_dh,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
HMGCS2	3158	genome.wustl.edu	37	1	120299898	120299898	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005518.3	-1	reviewed	p.F338	1.000	306	0%	191	33%	1	0%	-	-	-	HMMPfam_HMG_CoA_synt_C,superfamily_Thiolase-like
NOTCH2	4853	genome.wustl.edu	37	1	120480031	120480031	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024408.2	-1	reviewed	p.T1132	0.001	215	0.5%	139	23%	9	44.4%	-	-	-	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
NOTCH2	4853	genome.wustl.edu	37	1	120506415	120506415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024408.2	-1	reviewed	p.L566S	0.994	304	0%	249	30.5%	7	57.1%	possibly_damaging(0.95)	tolerated(0.78)	neutral(0.395)	HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
NBPF9	400818	genome.wustl.edu	37	1	144828616	144828616	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037675.2	+1	predicted	p.R639H	0.002	1972	0.1%	2266	12.4%	36	27.7%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144881579	144881579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.A1206V	0.002	201	0%	159	11.9%	5	0%	unknown(0)	tolerated(0.18)	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144906506	144906506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.A784D	0.998	955	0%	1093	18.3%	81	34.5%	benign(0.087)	tolerated(0.09)	neutral(0.303)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144931009	144931009	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002811.1	-1	validated	p.E234*	1.000	249	0.4%	147	11.6%	38	7.8%	-	-	-	NULL
HFE2	148738	genome.wustl.edu	37	1	145415436	145415436	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213653.3	+1	reviewed	p.S85	1.000	47	0%	38	10.5%	0	-	-	-	-	HMMPfam_RGM_N
TXNIP	10628	genome.wustl.edu	37	1	145439008	145439008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006472.3	+1	validated	p.Y69C	1.000	105	1%	110	14.5%	276	20.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arrestin_N,superfamily_Ig_E-set
POLR3GL	84265	genome.wustl.edu	37	1	145456652	145456652	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032305.1	-1	provisional	p.D214	1.000	399	0%	499	14.8%	46	21.7%	-	-	-	NULL
LIX1L	128077	genome.wustl.edu	37	1	145487457	145487457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153713.1	+1	provisional	p.G149V	1.000	175	0%	202	15.3%	12	16.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
PEX11B	8799	genome.wustl.edu	37	1	145522769	145522769	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003846.2	+1	validated	p.D210	1.000	471	0%	508	15.4%	71	23.9%	-	-	-	HMMPfam_PEX11
ITGA10	8515	genome.wustl.edu	37	1	145536910	145536910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003637.3	+1	reviewed	p.T764A	0.995	559	0%	586	15%	1	0%	possibly_damaging(0.902)	tolerated(0.28)	neutral(0.388)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
PIAS3	10401	genome.wustl.edu	37	1	145584504	145584504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006099.3	+1	reviewed	p.P491S	1.000	326	0%	284	18%	190	23.1%	possibly_damaging(0.489)	tolerated(0.06)	deleterious(0.485)	NULL
RNF115	27246	genome.wustl.edu	37	1	145686992	145686992	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014455.2	+1	validated	p.C228*	1.000	278	0%	356	18.5%	52	11.5%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
CD160	11126	genome.wustl.edu	37	1	145698833	145698833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369290	-1	known	p.Y111H	0.000	44	0%	43	16.3%	0	-	possibly_damaging(0.641)	-	-	NULL
GPR89A	653519	genome.wustl.edu	37	1	145765405	145765405	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097612.1	-1	validated	p.S375	1.000	1105	0%	1196	14.8%	49	12.2%	-	-	-	NULL
GPR89A	653519	genome.wustl.edu	37	1	145811997	145811997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097612.1	-1	validated	p.R71H	1.000	667	0%	719	14.6%	36	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKAB2	5565	genome.wustl.edu	37	1	146639359	146639359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005399.3	-1	reviewed	p.P104S	1.000	399	0%	323	17.3%	25	8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FMO5	2330	genome.wustl.edu	37	1	146661790	146661790	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001461.2	-1	reviewed	p.E408*	1.000	841	0%	932	18.3%	7	0%	-	-	-	HMMPfam_FMO-like
CHD1L	9557	genome.wustl.edu	37	1	146724335	146724335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004284.3	+1	validated	p.H62R	0.864	93	1.1%	83	26.5%	31	25.8%	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD1L	9557	genome.wustl.edu	37	1	146751849	146751849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004284.3	+1	validated	p.D564N	0.218	299	0%	300	14%	98	21.4%	benign(0.002)	tolerated(0.16)	neutral(0.059)	NULL
BCL9	607	genome.wustl.edu	37	1	147092322	147092322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.M787I	1.000	158	0%	146	13%	35	14.2%	benign(0)	tolerated(0.38)	neutral(0.018)	NULL
BCL9	607	genome.wustl.edu	37	1	147096264	147096264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.Q1262R	1.000	163	0%	122	11.5%	39	23%	benign(0.056)	tolerated(0.15)	neutral(0.244)	NULL
BCL9	607	genome.wustl.edu	37	1	147096704	147096704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004326.2	+1	reviewed	p.V1409M	1.000	90	0%	82	24.4%	36	22.2%	benign(0.104)	tolerated(0.19)	neutral(0.058)	NULL
GJA8	2703	genome.wustl.edu	37	1	147380742	147380742	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005267.4	+1	reviewed	p.N220	0.029	197	0%	147	13.6%	0	-	-	-	-	HMMPfam_Connexin_CCC
HIST2H3PS2	440686	genome.wustl.edu	37	1	149400154	149400154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369176	-1	known	p.R130H	1.000	90	0%	81	11.1%	0	-	possibly_damaging(0.826)	-	-	HMMSmart_H3,HMMPfam_Histone,superfamily_Histone-fold
HIST2H3PS2	440686	genome.wustl.edu	37	1	149400312	149400312	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369176	-1	known	p.Q77	1.000	53	0%	40	30%	1	0%	-	-	-	HMMSmart_H3,HMMPfam_Histone,superfamily_Histone-fold
FCGR1A	2209	genome.wustl.edu	37	1	149755777	149755777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000566.3	+1	reviewed	p.G91W	0.017	379	0%	340	15%	9	0%	benign(0.396)	deleterious(0.02)	deleterious(0.510)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
MTMR11	10903	genome.wustl.edu	37	1	149904175	149904175	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181873.3	-1	validated	p.R273*	1.000	1066	0.2%	846	17.5%	3	0%	-	-	-	superfamily_SSF52799
MTMR11	10903	genome.wustl.edu	37	1	149906171	149906171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181873.3	-1	validated	p.A127V	0.040	385	0%	316	15.8%	5	0%	benign(0.013)	tolerated(0.52)	neutral(0.009)	superfamily_SSF52799
OTUD7B	56957	genome.wustl.edu	37	1	149916280	149916280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020205.2	-1	validated	p.D670N	0.990	344	0%	236	19.5%	26	30.7%	possibly_damaging(0.661)	deleterious(0)	deleterious(0.678)	NULL
ANP32E	81611	genome.wustl.edu	37	1	150193030	150193030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030920.3	-1	validated	p.R257Q	1.000	298	0%	266	18%	158	24.6%	unknown(0)	tolerated(0.26)	-	NULL
C1orf54	79630	genome.wustl.edu	37	1	150252087	150252087	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024579.3	+1	validated	p.R112*	0.971	2077	0.1%	1853	19.9%	11	0%	-	-	-	NULL
PRPF3	9129	genome.wustl.edu	37	1	150297422	150297422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004698.2	+1	reviewed	p.L8M	1.000	266	0.4%	266	18.4%	23	21.7%	possibly_damaging(0.797)	deleterious(0.03)	deleterious(0.664)	HMMPfam_PWI,HMMSmart_SM00311,superfamily_PWI domain
RPRD2	23248	genome.wustl.edu	37	1	150444469	150444469	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015203.3	+1	validated	p.N1015	0.996	708	0%	615	17.2%	77	22%	-	-	-	NULL
RPRD2	23248	genome.wustl.edu	37	1	150444622	150444622	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015203.3	+1	validated	p.R1066	0.047	332	0.3%	323	14.2%	67	16.4%	-	-	-	NULL
RPRD2	23248	genome.wustl.edu	37	1	150445792	150445792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015203.3	+1	validated	p.F1456	1.000	193	0%	141	14.2%	93	17.2%	-	-	-	NULL
TARS2	80222	genome.wustl.edu	37	1	150460483	150460483	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.D72	0.008	192	0%	196	17.9%	44	22.7%	-	-	-	HMMPfam_TGS,superfamily_TGS-like
TARS2	80222	genome.wustl.edu	37	1	150470083	150470083	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.G366	0.660	264	0%	262	16.8%	52	21.1%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_SSF55681
TARS2	80222	genome.wustl.edu	37	1	150471733	150471733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025150.3	+1	provisional	p.D527E	0.736	814	0%	772	13.5%	98	21.4%	benign(0.005)	tolerated(1)	-	superfamily_SSF55681
ECM1	1893	genome.wustl.edu	37	1	150483942	150483942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004425.3	+1	reviewed	p.A240T	0.306	238	0%	210	16.7%	25	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	superfamily_Serum albumin-like,HMMPfam_ECM1
ECM1	1893	genome.wustl.edu	37	1	150485877	150485877	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004425.3	+1	reviewed	p.G519	0.001	92	0%	89	16.9%	22	0%	-	-	-	HMMPfam_ECM1
ENSA	2029	genome.wustl.edu	37	1	150599922	150599922	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207168.1	-1	reviewed	p.Y68	0.000	392	0%	469	14.9%	8	12.5%	-	-	-	NULL
ENSA	2029	genome.wustl.edu	37	1	150600018	150600018	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207042.1	-1	reviewed	p.K36	1.000	210	0%	254	17.7%	303	27%	-	-	-	HMMPfam_Endosulfine
SETDB1	9869	genome.wustl.edu	37	1	150902450	150902450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145415.1	+1	reviewed	p.T90A	1.000	451	0%	417	15.6%	37	24.3%	benign(0.059)	tolerated(0.1)	neutral(0.290)	NULL
SETDB1	9869	genome.wustl.edu	37	1	150936765	150936765	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145415.1	+1	reviewed	p.Y1267	0.464	124	0%	106	17%	117	21.3%	-	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CERS2	29956	genome.wustl.edu	37	1	150941529	150941529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022075.3	-1	reviewed	p.R13H	1.000	132	0%	109	21.1%	101	26.7%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
FAM63A	55793	genome.wustl.edu	37	1	150972430	150972430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018379.4	-1	validated	p.A249V	1.000	96	0%	102	15.7%	21	19%	benign(0)	tolerated(1)	-	HMMPfam_DUF544
MLLT11	10962	genome.wustl.edu	37	1	151039788	151039788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006818.3	+1	reviewed	p.L30M	1.000	457	0%	456	16.4%	2	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151076151	151076151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144618.2	+1	validated	p.A246S	1.000	220	0%	222	18%	19	0%	possibly_damaging(0.442)	tolerated(0.68)	neutral(0.146)	NULL
GABPB2	126626	genome.wustl.edu	37	1	151089880	151089880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144618.2	+1	validated	p.P312H	1.000	199	0%	224	18.8%	14	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SEMA6C	10500	genome.wustl.edu	37	1	151109506	151109506	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030913.4	-1	reviewed	p.G267	0.309	86	0%	82	13.4%	1	100%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
VPS72	6944	genome.wustl.edu	37	1	151149453	151149453	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005997.1	-1	provisional	p.P254	0.000	138	0%	140	15%	216	24%	-	-	-	NULL
PIP5K1A	8394	genome.wustl.edu	37	1	151196742	151196742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135638.1	+1	validated	p.P36H	0.002	656	0.3%	602	14.8%	37	29.7%	benign(0.397)	deleterious(0.03)	deleterious(0.492)	NULL
PIP5K1A	8394	genome.wustl.edu	37	1	151205142	151205142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135638.1	+1	validated	p.A201V	1.000	168	0%	183	17.5%	79	27.8%	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
PSMD4	5710	genome.wustl.edu	37	1	151237347	151237347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002810.2	+1	reviewed	p.R108C	1.000	134	0%	131	11.5%	401	20.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00327,superfamily_vWA-like
ZNF687	57592	genome.wustl.edu	37	1	151258974	151258974	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020832.1	+1	provisional	p.A69	1.000	127	0%	120	20%	27	11.1%	-	-	-	NULL
ZNF687	57592	genome.wustl.edu	37	1	151259343	151259343	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020832.1	+1	provisional	p.P192	0.876	141	0%	112	17.9%	42	16.6%	-	-	-	NULL
RFX5	5993	genome.wustl.edu	37	1	151315507	151315507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000449.3	-1	reviewed	p.A336T	1.000	102	0%	84	26.2%	48	18.7%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
SELENBP1	8991	genome.wustl.edu	37	1	151338767	151338767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003944.2	-1	reviewed	p.R276H	1.000	208	0%	188	17%	210	26.1%	benign(0.042)	tolerated(0.69)	neutral(0.005)	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C
POGZ	23126	genome.wustl.edu	37	1	151384785	151384785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.P589H	1.000	270	0%	260	15%	37	21.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
POGZ	23126	genome.wustl.edu	37	1	151395897	151395897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.V552I	1.000	317	0%	343	11.7%	28	10.7%	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
POGZ	23126	genome.wustl.edu	37	1	151396426	151396426	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.R508*	1.000	296	0%	309	15.5%	42	7.1%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POGZ	23126	genome.wustl.edu	37	1	151400425	151400425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.A318T	1.000	122	0.8%	135	12.6%	23	21.7%	possibly_damaging(0.903)	deleterious(0.04)	deleterious(0.707)	NULL
CGN	57530	genome.wustl.edu	37	1	151508127	151508127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.L1016M	1.000	137	0.7%	151	17.2%	30	26.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Myosin_tail_1
SNX27	81609	genome.wustl.edu	37	1	151665017	151665017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030918.5	+1	reviewed	p.T449M	1.000	315	0%	293	14.3%	15	26.6%	benign(0.053)	tolerated(0.09)	neutral(0.300)	NULL
MRPL9	65005	genome.wustl.edu	37	1	151733313	151733313	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031420.2	-1	reviewed	p.G217	0.997	352	0%	432	15.7%	165	0.6%	-	-	-	NULL
OAZ3	51686	genome.wustl.edu	37	1	151739680	151739680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016178.2	+1	reviewed	p.R70H	0.967	180	0%	163	14.1%	19	10.5%	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_ODC_AZ
TDRKH	11022	genome.wustl.edu	37	1	151752566	151752566	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083963.1	-1	validated	p.G94	0.714	396	0%	356	16.9%	9	22.2%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
RORC	6097	genome.wustl.edu	37	1	151780017	151780017	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005060.3	-1	reviewed	p.A496	0.004	148	0%	89	16.9%	87	21.8%	-	-	-	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
THEM4	117145	genome.wustl.edu	37	1	151849561	151849561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053055.3	-1	reviewed	p.L200F	0.852	489	0%	581	17.6%	27	11.1%	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	HMMPfam_4HBT,superfamily_SSF54637
S100A11	6282	genome.wustl.edu	37	1	152006206	152006206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005620.1	-1	reviewed	p.A25V	0.984	223	0%	199	15.6%	1012	19.7%	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	HMMPfam_S_100,superfamily_SSF47473
TCHHL1	126637	genome.wustl.edu	37	1	152058246	152058246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008536.1	-1	provisional	p.P638T	0.301	569	0%	550	18.2%	0	-	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
TCHH	7062	genome.wustl.edu	37	1	152080007	152080007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R1896C	0.001	800	0%	651	21%	1	0%	probably_damaging(1)	-	-	NULL
TCHH	7062	genome.wustl.edu	37	1	152080282	152080282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R1804H	0.000	640	0.2%	609	17.2%	0	-	probably_damaging(0.999)	-	-	NULL
RPTN	126638	genome.wustl.edu	37	1	152130311	152130311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122965.1	-1	validated	p.A19T	0.119	363	0%	440	15.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_S_100,superfamily_EF-hand
HRNR	388697	genome.wustl.edu	37	1	152188994	152188994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.R1704Q	0.000	258	4.7%	175	6.3%	0	-	unknown(0)	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152191525	152191525	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.S860	0.000	121	0%	89	16.9%	0	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152191918	152191918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.H729	0.000	202	0%	163	20.2%	0	-	-	-	-	NULL
HRNR	388697	genome.wustl.edu	37	1	152193097	152193097	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009931.1	-1	validated	p.G336	0.000	129	0%	77	15.6%	0	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152276387	152276387	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.S3659T	0.000	880	0%	795	17.9%	0	-	possibly_damaging(0.752)	tolerated(0.48)	neutral(0.287)	HMMPfam_Filaggrin
FLG	2312	genome.wustl.edu	37	1	152276606	152276606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.A3586T	0.000	742	0.1%	712	15.3%	0	-	benign(0.059)	tolerated(0.51)	neutral(0.013)	NULL
FLG	2312	genome.wustl.edu	37	1	152277195	152277195	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000271820	-1	known	e6-1	0.000	651	0.2%	628	15.6%	1	0%	unknown(0)	deleterious(0.03)	-	-
FLG	2312	genome.wustl.edu	37	1	152280161	152280161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.R2401C	0.000	511	0%	441	16.8%	1	0%	unknown(0)	tolerated(0.09)	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152326899	152326899	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014342.2	-1	provisional	p.G1121	0.014	844	0.1%	871	17.8%	0	-	-	-	-	NULL
FLG2	388698	genome.wustl.edu	37	1	152329719	152329719	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014342.2	-1	provisional	p.Y181	0.000	350	0%	360	10.8%	0	-	-	-	-	NULL
CRNN	49860	genome.wustl.edu	37	1	152382565	152382565	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016190.2	-1	reviewed	p.H331	0.000	640	0.3%	692	19.5%	0	-	-	-	-	NULL
LCE2B	26239	genome.wustl.edu	37	1	152659569	152659569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014357.4	+1	reviewed	p.R84C	0.000	220	0%	214	22%	0	-	unknown(0)	-	-	NULL
LCE2A	353139	genome.wustl.edu	37	1	152671534	152671534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178428.3	+1	validated	p.G53S	0.677	211	0%	224	15.6%	0	-	unknown(0)	-	-	NULL
KPRP	448834	genome.wustl.edu	37	1	152732100	152732100	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025231.1	+1	provisional	p.P12	0.000	326	0%	309	18.4%	0	-	-	-	-	NULL
LCE1B	353132	genome.wustl.edu	37	1	152784995	152784995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178349.1	+1	validated	p.L25I	0.776	485	0%	474	16.7%	0	-	unknown(0)	-	-	NULL
LCE1A	353131	genome.wustl.edu	37	1	152800215	152800215	+	Silent	SNP	C	C	T	rs112149679		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178348.1	+1	validated	p.S89	0.996	68	0%	56	19.6%	0	-	-	-	-	NULL
SMCP	4184	genome.wustl.edu	37	1	152857216	152857216	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030663.2	+1	reviewed	p.H106	0.000	437	0%	358	14%	0	-	-	-	-	NULL
IVL	3713	genome.wustl.edu	37	1	152882470	152882470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005547.2	+1	reviewed	p.A66D	0.000	247	0%	221	21.3%	0	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Involucrin_N
IVL	3713	genome.wustl.edu	37	1	152883771	152883771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005547.2	+1	reviewed	p.P500S	0.000	57	0%	57	19.3%	0	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_Involucrin
S100A2	6273	genome.wustl.edu	37	1	153536262	153536262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005978.3	-1	reviewed	p.S30I	0.930	123	0%	86	17.4%	4	25%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_S_100,superfamily_EF-hand
S100A14	57402	genome.wustl.edu	37	1	153587768	153587768	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020672.1	-1	provisional	p.T40	0.580	16	0%	23	21.7%	1	0%	-	-	-	HMMPfam_S_100,superfamily_SSF47473
S100A13	6284	genome.wustl.edu	37	1	153591411	153591411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024210.1	-1	reviewed	p.E86G	0.997	154	0.6%	181	13.3%	120	16.6%	unknown(0)	tolerated(0.1)	-	superfamily_SSF47473
CHTOP	26097	genome.wustl.edu	37	1	153614724	153614724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015607.2	+1	provisional	p.S74R	1.000	100	0%	81	19.8%	87	13.7%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
CHTOP	26097	genome.wustl.edu	37	1	153615726	153615726	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015607.2	+1	provisional	p.R143*	1.000	232	0%	185	15.1%	67	2.9%	-	-	-	NULL
CHTOP	26097	genome.wustl.edu	37	1	153617695	153617695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015607.2	+1	provisional	p.A233T	1.000	146	0%	108	18.5%	157	5%	unknown(0)	deleterious(0)	-	NULL
NPR1	4881	genome.wustl.edu	37	1	153659534	153659534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000906.3	+1	validated	p.R636W	1.000	359	0.3%	369	17.3%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NPR1	4881	genome.wustl.edu	37	1	153660639	153660639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000906.3	+1	validated	p.D787Y	1.000	174	0%	178	12.9%	3	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
INTS3	65123	genome.wustl.edu	37	1	153735804	153735804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023015.3	+1	validated	p.L578M	0.997	381	0%	336	15.2%	39	15.3%	benign(0.002)	tolerated(0.11)	neutral(0.272)	NULL
INTS3	65123	genome.wustl.edu	37	1	153744851	153744851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023015.3	+1	validated	p.T919I	1.000	90	0%	68	13.2%	107	9.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SLC27A3	11000	genome.wustl.edu	37	1	153749127	153749127	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458027	+1	known	p.G19V	0.656	106	0%	87	14.9%	25	32%	-	-	-	superfamily_Acetyl-CoA synthetase-like
GATAD2B	57459	genome.wustl.edu	37	1	153782718	153782718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020699.2	-1	validated	p.R573C	1.000	309	0.3%	288	14.9%	47	17%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153907377	153907377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.R878W	1.000	136	0.7%	91	13.2%	22	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153914693	153914693	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.T260	1.000	64	0%	29	17.2%	17	11.7%	-	-	-	HMMPfam_uDENN,HMMSmart_uDENN
CRTC2	200186	genome.wustl.edu	37	1	153925108	153925108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181715.1	-1	provisional	p.P214L	1.000	969	0%	898	17%	102	20.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CRTC2	200186	genome.wustl.edu	37	1	153926080	153926080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181715.1	-1	provisional	p.T146M	0.993	84	0%	69	34.8%	69	20.2%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
CRTC2	200186	genome.wustl.edu	37	1	153927552	153927552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181715.1	-1	provisional	p.A82T	0.978	236	0%	213	20.7%	82	18.2%	benign(0.156)	tolerated(0.79)	neutral(0.015)	NULL
NUP210L	91181	genome.wustl.edu	37	1	153965503	153965503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.T1852A	0.007	215	0%	153	13.1%	0	-	unknown(0)	tolerated(0.4)	-	NULL
NUP210L	91181	genome.wustl.edu	37	1	153994676	153994676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.A1481D	1.000	223	0%	185	17.8%	2	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
NUP210L	91181	genome.wustl.edu	37	1	154067514	154067514	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.A695V	0.000	97	0%	78	19.2%	0	-	benign(0)	tolerated(1)	-	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154233486	154233486	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433615	+1	known	p.P230S	1.000	172	0%	153	18.3%	561	21.3%	-	-	-	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154241364	154241364	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433615	+1	known	p.H365Y	1.000	779	0%	780	15.5%	308	17.5%	-	-	-	NULL
HAX1	10456	genome.wustl.edu	37	1	154245948	154245948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006118.3	+1	reviewed	p.G64S	0.890	157	0%	142	17.6%	221	16.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AQP10	89872	genome.wustl.edu	37	1	154295506	154295506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080429.2	+1	reviewed	p.R94H	0.938	112	0.9%	93	25.8%	0	-	benign(0.097)	deleterious(0.05)	neutral(0.353)	HMMPfam_MIP,superfamily_Aquaporin-like
SHE	126669	genome.wustl.edu	37	1	154458465	154458465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010846.2	-1	validated	p.V419I	1.000	110	0%	87	21.8%	1	0%	possibly_damaging(0.877)	deleterious(0.04)	deleterious(0.691)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
UBE2Q1	55585	genome.wustl.edu	37	1	154523450	154523450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017582.6	-1	reviewed	p.S401P	1.000	496	0%	420	13.8%	208	22.5%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
CHRNB2	1141	genome.wustl.edu	37	1	154543838	154543838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000748.2	+1	reviewed	p.R180H	1.000	96	1%	90	13.3%	0	-	benign(0.031)	tolerated(0.11)	neutral(0.273)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
CHRNB2	1141	genome.wustl.edu	37	1	154543953	154543953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000748.2	+1	reviewed	p.D218E	1.000	89	0%	73	13.7%	0	-	probably_damaging(0.987)	tolerated(0.92)	neutral(0.436)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ADAR	103	genome.wustl.edu	37	1	154562270	154562270	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111.3	-1	reviewed	p.D877	0.114	121	0%	92	15.2%	131	31.2%	-	-	-	HMMSmart_SM00552
ADAR	103	genome.wustl.edu	37	1	154574229	154574229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111.3	-1	reviewed	p.A297T	1.000	463	0%	418	19.1%	115	24.3%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	"HMMPfam_z-alpha,HMMSmart_SM00550,superfamily_""Winged helix"" DNA-binding domain"
PBXIP1	57326	genome.wustl.edu	37	1	154919850	154919850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368460	-1	known	p.G274C	0.000	92	0%	48	22.9%	0	-	unknown(0)	-	-	NULL
FLAD1	80308	genome.wustl.edu	37	1	154961034	154961034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025207.4	+1	reviewed	p.A276T	0.996	102	0%	111	26.1%	172	20.9%	benign(0.085)	tolerated(0.57)	neutral(0.012)	superfamily_Molybdenum cofactor biosynthesis proteins
ZBTB7B	51043	genome.wustl.edu	37	1	154987481	154987481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015872.2	+1	validated	p.S115	1.000	97	0%	102	18.6%	111	20.7%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ZBTB7B	51043	genome.wustl.edu	37	1	154987592	154987592	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015872.2	+1	validated	p.D152	0.871	101	1%	72	20.8%	88	18.1%	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	155002981	155002981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144622.2	-1	validated	p.L316M	0.997	49	0%	58	12.1%	1	0%	benign(0.405)	tolerated(0.16)	neutral(0.190)	NULL
ADAM15	8751	genome.wustl.edu	37	1	155026793	155026793	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207197.1	+1	reviewed	p.G141	0.631	311	0%	255	17.6%	129	22.4%	-	-	-	HMMPfam_Pep_M12B_propep
ADAM15	8751	genome.wustl.edu	37	1	155029752	155029752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207197.1	+1	reviewed	p.R413W	0.005	145	0%	93	26.9%	229	18.3%	benign(0.004)	tolerated(0.06)	neutral(0.323)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM15	8751	genome.wustl.edu	37	1	155030122	155030122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207197.1	+1	reviewed	p.D445N	0.992	124	0%	84	15.5%	254	20.4%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
EFNA4	1945	genome.wustl.edu	37	1	155041628	155041628	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182689.1	+1	reviewed	p.A201	0.000	66	0%	57	19.3%	57	17.5%	-	-	-	NULL
EFNA3	1944	genome.wustl.edu	37	1	155058969	155058969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004952.4	+1	reviewed	p.P223S	1.000	99	0%	90	18.9%	8	0%	benign(0.312)	tolerated(0.49)	neutral(0.108)	NULL
LOC648822	648822	genome.wustl.edu	37	1	155121374	155121374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718420.1	+1	model	p.A137T	1.000	197	0%	171	19.3%	0	-	-	-	-	NULL
TRIM46	80128	genome.wustl.edu	37	1	155148067	155148067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025058.3	+1	validated	p.R90L	1.000	108	0.9%	112	15.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00184,superfamily_RING/U-box
MTX1	4580	genome.wustl.edu	37	1	155182561	155182561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002455.3	+1	validated	p.A344V	1.000	43	0%	40	15%	90	14.4%	benign(0.031)	tolerated(0.12)	neutral(0.262)	superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_Tom37
FAM189B	10712	genome.wustl.edu	37	1	155224225	155224225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006589.2	-1	validated	p.G83D	1.000	194	0%	118	15.3%	34	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SCAMP3	10067	genome.wustl.edu	37	1	155226202	155226202	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005698.2	-1	reviewed	p.S302	1.000	322	0%	223	11.2%	274	26.2%	-	-	-	HMMPfam_SCAMP
CLK2	1196	genome.wustl.edu	37	1	155238119	155238119	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003993.2	-1	reviewed	p.T172	1.000	195	0%	156	14.1%	61	11.4%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CLK2	1196	genome.wustl.edu	37	1	155239489	155239489	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003993.2	-1	reviewed	p.S63	0.000	353	0%	337	16.9%	59	16.9%	-	-	-	NULL
HCN3	57657	genome.wustl.edu	37	1	155255587	155255587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.V437I	1.000	103	0%	85	16.5%	4	50%	benign(0.122)	tolerated(0.26)	neutral(0.044)	HMMSmart_cNMP,superfamily_cNMP_binding
RUSC1-AS1	284618	genome.wustl.edu	37	1	155291065	155291065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039517.1	-1	predicted	p.T72M	0.000	60	0%	62	22.6%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155309120	155309120	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.R2834*	0.985	192	0%	208	36.5%	43	30.2%	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155408653	155408653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.L1765I	1.000	305	0%	264	17.8%	13	15.3%	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155448164	155448164	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.Q1499	1.000	210	0%	240	11.7%	31	38.7%	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155450123	155450123	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.T846	1.000	607	0%	745	17.7%	10	50%	-	-	-	NULL
DAP3	7818	genome.wustl.edu	37	1	155695174	155695174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004632.2	+1	reviewed	p.V91A	1.000	199	0%	230	10.9%	220	19%	benign(0.031)	tolerated(0.22)	neutral(0.044)	NULL
SYT11	23208	genome.wustl.edu	37	1	155851027	155851027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152280.4	+1	reviewed	p.R342C	1.000	739	0%	659	18.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
RIT1	6016	genome.wustl.edu	37	1	155880292	155880292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006912.4	-1	validated	p.T38A	1.000	347	0%	360	20.3%	44	40.9%	benign(0.253)	deleterious(0)	deleterious(0.471)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0907	22889	genome.wustl.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014949.2	-1	predicted	p.R516fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0907	22889	genome.wustl.edu	37	1	155899533	155899533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014949.2	-1	predicted	p.N118	1.000	198	0%	225	17.3%	39	12.8%	-	-	-	superfamily_Eukaryotic type KH-domain (KH-domain type I)
RXFP4	339403	genome.wustl.edu	37	1	155911856	155911856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181885.2	+1	validated	p.T119M	0.989	77	0%	61	24.6%	0	-	possibly_damaging(0.921)	tolerated(0.24)	neutral(0.408)	HMMPfam_7tm_1,superfamily_SSF81321
UBQLN4	56893	genome.wustl.edu	37	1	156018388	156018388	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020131.3	-1	provisional	p.A268	1.000	125	0%	95	18.9%	93	13.9%	-	-	-	NULL
MEX3A	92312	genome.wustl.edu	37	1	156046752	156046752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093725.1	-1	validated	p.W392C	1.000	53	0%	41	14.6%	19	15.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MEX3A	92312	genome.wustl.edu	37	1	156047380	156047380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093725.1	-1	validated	p.R183Q	1.000	58	0%	52	17.3%	31	19.3%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
SEMA4A	64218	genome.wustl.edu	37	1	156146323	156146323	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022367.2	+1	provisional	p.N607	0.994	338	0.3%	290	17.2%	14	7.1%	-	-	-	NULL
SMG5	23381	genome.wustl.edu	37	1	156230266	156230266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	p.R753	0.998	172	0%	179	13.4%	88	20.4%	-	-	-	NULL
SMG5	23381	genome.wustl.edu	37	1	156238160	156238160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	p.R254W	1.000	942	0.1%	953	21.8%	99	15.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM79	84283	genome.wustl.edu	37	1	156255201	156255201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032323.2	+1	validated	p.A62T	0.000	50	0%	59	20.3%	9	11.1%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
TMEM79	84283	genome.wustl.edu	37	1	156256137	156256137	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032323.2	+1	validated	p.R282*	0.873	90	0%	63	12.7%	17	29.4%	-	-	-	NULL
TMEM79	84283	genome.wustl.edu	37	1	156256151	156256151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032323.2	+1	validated	p.Q286H	1.000	93	0%	86	18.6%	17	11.7%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	NULL
VHLL	391104	genome.wustl.edu	37	1	156268826	156268826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004319.2	-1	reviewed	p.E52G	0.000	96	0%	82	19.5%	1	0%	-	-	-	HMMPfam_VHL,superfamily_SSF49468
CCT3	7203	genome.wustl.edu	37	1	156288736	156288736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005998.3	-1	reviewed	p.R228C	0.813	134	0%	123	21.1%	835	22.1%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
RHBG	57127	genome.wustl.edu	37	1	156339044	156339044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.A2T	1.000	28	0%	24	29.2%	0	-	possibly_damaging(0.842)	deleterious(0.01)	deleterious(0.728)	NULL
RHBG	57127	genome.wustl.edu	37	1	156347885	156347885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.V160A	1.000	76	0%	65	15.4%	0	-	benign(0.041)	deleterious(0.03)	neutral(0.367)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
MEF2D	4209	genome.wustl.edu	37	1	156437994	156437994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005920.2	-1	provisional	p.R449C	1.000	67	0%	46	13%	51	3.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156497763	156497763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.R1588Q	0.013	214	0%	162	13%	22	22.7%	benign(0.032)	tolerated(0.1)	neutral(0.288)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156502847	156502847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.S1343Y	1.000	295	0%	292	15.8%	20	40%	possibly_damaging(0.944)	tolerated(0.06)	deleterious(0.711)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156517979	156517979	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.N730	0.142	138	0%	121	24.8%	5	0%	-	-	-	HMMSmart_IQ
IQGAP3	128239	genome.wustl.edu	37	1	156521851	156521851	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178229.4	-1	validated	p.R495	0.000	233	0.4%	195	19%	8	37.5%	-	-	-	NULL
TTC24	164118	genome.wustl.edu	37	1	156552138	156552138	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340086	+1	known	p.Q47R	0.132	40	0%	33	12.1%	0	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
GPATCH4	54865	genome.wustl.edu	37	1	156565880	156565880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015590.2	-1	validated	p.A162S	1.000	175	0%	119	15.1%	70	25.7%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
BCAN	63827	genome.wustl.edu	37	1	156615902	156615902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021948.3	+1	validated	p.A19V	0.001	35	0%	37	13.5%	0	-	unknown(0)	tolerated(1)	-	NULL
BCAN	63827	genome.wustl.edu	37	1	156618627	156618627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021948.3	+1	validated	p.S346I	1.000	343	0.3%	311	13.5%	0	-	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
NES	10763	genome.wustl.edu	37	1	156639119	156639119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.D1621N	0.871	141	0%	140	17.9%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NES	10763	genome.wustl.edu	37	1	156640101	156640101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.E1293D	0.862	178	0%	155	21.3%	13	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
NES	10763	genome.wustl.edu	37	1	156640737	156640737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.E1081D	0.002	77	0%	49	18.4%	2	0%	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
NES	10763	genome.wustl.edu	37	1	156641680	156641680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006617.1	-1	reviewed	p.R767M	0.000	117	0%	82	15.9%	7	0%	possibly_damaging(0.852)	deleterious(0.01)	deleterious(0.733)	NULL
RRNAD1	51093	genome.wustl.edu	37	1	156703837	156703837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015997.3	+1	validated	p.V225M	0.887	130	0%	117	17.1%	39	30.7%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
MRPL24	79590	genome.wustl.edu	37	1	156708492	156708492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024540.3	-1	reviewed	p.R2H	1.000	122	0%	110	17.3%	222	27%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HDGF	3068	genome.wustl.edu	37	1	156713986	156713986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126050.1	-1	reviewed	p.A169V	0.402	438	0.2%	351	21.1%	539	25.2%	benign(0.077)	tolerated(0.2)	neutral(0.054)	NULL
INSRR	3645	genome.wustl.edu	37	1	156810698	156810698	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.D1287	0.998	14	0%	18	22.2%	0	-	-	-	-	NULL
INSRR	3645	genome.wustl.edu	37	1	156811200	156811200	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.G1216	0.996	111	0%	79	24.1%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
INSRR	3645	genome.wustl.edu	37	1	156819237	156819237	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.Y415	0.725	55	0%	25	28%	0	-	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
PEAR1	375033	genome.wustl.edu	37	1	156876430	156876430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080471.1	+1	provisional	p.E134D	0.000	79	1.3%	62	19.4%	0	-	benign(0.032)	tolerated(0.54)	neutral(0.009)	PatternScan_EGF_2
PEAR1	375033	genome.wustl.edu	37	1	156879655	156879655	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080471.1	+1	provisional	p.A508	1.000	75	0%	57	24.6%	0	-	-	-	-	HMMSmart_EGF
PEAR1	375033	genome.wustl.edu	37	1	156880108	156880108	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080471.1	+1	provisional	p.T587	1.000	224	0%	217	10.6%	2	0%	-	-	-	HMMSmart_EGF,HMMPfam_EGF_2
LRRC71	149499	genome.wustl.edu	37	1	156897359	156897359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144702.2	+1	validated	p.S245F	1.000	47	0%	44	27.3%	5	60%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMSmart_SM00368,superfamily_RNI-like
ARHGEF11	9826	genome.wustl.edu	37	1	156910053	156910053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.A1227T	0.997	104	0%	91	24.2%	43	25.5%	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156914914	156914914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.A963V	0.998	88	0%	53	13.2%	41	24.3%	benign(0.291)	tolerated(0.05)	neutral(0.435)	superfamily_DH-domain
ARHGEF11	9826	genome.wustl.edu	37	1	156921459	156921459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.H611Y	1.000	189	0%	130	16.9%	34	29.4%	probably_damaging(0.983)	tolerated(0.1)	deleterious(0.716)	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156931470	156931470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.A413V	1.000	203	0%	202	11.4%	29	17.2%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_RGS,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
FCRL5	83416	genome.wustl.edu	37	1	157490975	157490975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031281.2	-1	validated	p.L783M	0.990	107	0%	111	18.9%	1	0%	possibly_damaging(0.906)	tolerated(0.12)	deleterious(0.620)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL4	83417	genome.wustl.edu	37	1	157559120	157559120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031282.2	-1	reviewed	p.H61Y	0.000	211	0%	252	16.3%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
FCRL2	79368	genome.wustl.edu	37	1	157746857	157746857	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030764.3	-1	reviewed	p.L3	0.787	355	0%	350	19.4%	0	-	-	-	-	NULL
FCRL1	115350	genome.wustl.edu	37	1	157773733	157773733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052938.4	-1	reviewed	p.A74V	0.002	245	0%	263	16.3%	0	-	benign(0.221)	tolerated(0.08)	neutral(0.322)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL1	115350	genome.wustl.edu	37	1	157773883	157773883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052938.4	-1	reviewed	p.S24I	0.002	252	0%	267	19.5%	0	-	probably_damaging(0.991)	tolerated(0.19)	deleterious(0.493)	HMMSmart_SM00409,superfamily_Immunoglobulin
LOC729866	729866	genome.wustl.edu	37	1	157894919	157894919	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078238.1	-1	model	NULL	0.000	59	0%	55	14.5%	0	-	-	-	-	-
LOC729866	729866	genome.wustl.edu	37	1	157894988	157894988	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078238.1	-1	model	NULL	0.000	77	0%	78	24.4%	0	-	-	-	-	-
KIRREL	55243	genome.wustl.edu	37	1	158057567	158057567	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.S228	1.000	95	0%	100	14%	3	0%	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
KIRREL	55243	genome.wustl.edu	37	1	158063423	158063423	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.D530	0.876	64	0%	62	19.4%	8	50%	-	-	-	NULL
KIRREL	55243	genome.wustl.edu	37	1	158064863	158064863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.S743P	1.000	44	0%	30	16.7%	3	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CD1D	912	genome.wustl.edu	37	1	158151947	158151947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001766.3	+1	reviewed	p.T152A	0.000	604	0%	504	17.9%	1	0%	benign(0)	tolerated(0.89)	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1A	909	genome.wustl.edu	37	1	158224912	158224912	+	Missense_Mutation	SNP	G	G	A	rs140904380	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001763.2	+1	reviewed	p.A33T	0.000	604	0.2%	601	15.3%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
CD1E	913	genome.wustl.edu	37	1	158324210	158324210	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030893.2	+1	reviewed	p.Q34	0.000	485	0.2%	500	19%	0	-	-	-	-	superfamily_MHC antigen-recognition domain
OR10Z1	128368	genome.wustl.edu	37	1	158576749	158576749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004478.1	+1	provisional	p.I174T	0.994	490	0%	652	20.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158582745	158582745	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.G2332	0.416	258	0%	308	14.6%	0	-	-	-	-	superfamily_EF-hand
SPTA1	6708	genome.wustl.edu	37	1	158585176	158585176	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.I2206	0.996	496	0%	593	19.9%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158612230	158612230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.A1570T	0.971	379	0%	551	16.2%	0	-	benign(0.114)	tolerated(0.5)	neutral(0.019)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158614187	158614187	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	e30-1	1.000	262	0%	358	15.1%	0	-	-	-	-	-
SPTA1	6708	genome.wustl.edu	37	1	158624467	158624467	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.A990	1.000	134	0%	185	15.1%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00150
SPTA1	6708	genome.wustl.edu	37	1	158626363	158626363	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.N963	0.995	358	0%	340	18.2%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158636122	158636122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.A735D	0.004	106	0%	101	14.9%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158655064	158655064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.T33I	0.104	321	0%	536	17.2%	0	-	benign(0.057)	tolerated(0.09)	neutral(0.300)	HMMPfam_Spectrin,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158656284	158656284	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.T8	0.448	136	0%	200	16%	0	-	-	-	-	superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687275	158687275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.L227I	0.003	473	0.4%	724	15.7%	0	-	possibly_damaging(0.803)	tolerated(0.14)	deleterious(0.552)	HMMPfam_7tm_1,superfamily_SSF81321
OR6K6	128371	genome.wustl.edu	37	1	158724885	158724885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005184.1	+1	provisional	p.L94I	0.905	518	0.2%	495	13.1%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6K6	128371	genome.wustl.edu	37	1	158725212	158725212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005184.1	+1	provisional	p.H203N	0.250	207	0%	193	14%	0	-	benign(0.016)	tolerated(0.72)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6K6	128371	genome.wustl.edu	37	1	158725461	158725461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005184.1	+1	provisional	p.Y286H	1.000	243	0%	214	15.9%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6N1	128372	genome.wustl.edu	37	1	158736019	158736019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005185.1	-1	provisional	p.G152C	0.663	241	0%	306	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
IFI16	3428	genome.wustl.edu	37	1	159015102	159015102	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005531.2	+1	reviewed	p.I449L	0.000	507	0%	559	12.3%	50	2%	benign(0.002)	tolerated(0.8)	neutral(0.001)	NULL
IFI16	3428	genome.wustl.edu	37	1	159019388	159019388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000295809	+1	known	p.T555M	0.013	498	0%	593	14%	57	5.2%	benign(0.01)	deleterious(0.04)	neutral(0.349)	NULL
CADM3	57863	genome.wustl.edu	37	1	159162419	159162419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021189.3	+1	validated	p.S128N	1.000	388	0%	291	15.5%	0	-	benign(0.114)	tolerated(0.56)	neutral(0.015)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
CADM3	57863	genome.wustl.edu	37	1	159166159	159166159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021189.3	+1	validated	p.P267S	0.999	125	0%	93	16.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF48726
FCER1A	2205	genome.wustl.edu	37	1	159277609	159277609	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002001.2	+1	reviewed	p.G221*	0.001	289	0%	382	13.4%	0	-	-	-	-	NULL
OR10J3	441911	genome.wustl.edu	37	1	159283925	159283925	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004467.1	-1	provisional	p.I175	0.133	333	0%	328	18.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CRP	1401	genome.wustl.edu	37	1	159683656	159683656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000567.2	-1	reviewed	p.V112I	0.000	626	0%	645	17.5%	0	-	benign(0.012)	tolerated(0.18)	neutral(0.057)	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
FCRL6	343413	genome.wustl.edu	37	1	159784012	159784012	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004310.2	+1	validated	p.V359	0.004	397	0%	306	11.1%	0	-	-	-	-	NULL
SLAMF8	56833	genome.wustl.edu	37	1	159802890	159802890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020125.2	+1	reviewed	p.A198T	0.992	323	0.3%	320	17.5%	9	0%	possibly_damaging(0.903)	tolerated(0.11)	deleterious(0.629)	superfamily_Immunoglobulin
VSIG8	391123	genome.wustl.edu	37	1	159827665	159827665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013661.1	-1	provisional	p.Q174H	0.939	45	0%	50	26%	0	-	possibly_damaging(0.497)	tolerated(0.07)	deleterious(0.485)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGSF9	57549	genome.wustl.edu	37	1	159898275	159898275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.R968H	0.011	34	0%	24	20.8%	17	29.4%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159900212	159900212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.A611S	0.983	220	0.5%	231	10.4%	21	19%	benign(0.071)	tolerated(0.4)	neutral(0.021)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159900217	159900217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.T609M	1.000	222	0%	227	17.6%	20	25%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
IGSF9	57549	genome.wustl.edu	37	1	159901256	159901256	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.N500	0.000	302	0%	272	22.1%	21	19%	-	-	-	superfamily_SSF48726
SLAMF9	89886	genome.wustl.edu	37	1	159922091	159922091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033438.3	-1	reviewed	p.V209I	0.000	174	0.6%	163	18.4%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	superfamily_Immunoglobulin
SLAMF9	89886	genome.wustl.edu	37	1	159922266	159922266	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033438.3	-1	reviewed	p.C150	0.012	314	0.3%	385	16.4%	0	-	-	-	-	superfamily_Immunoglobulin
SLAMF9	89886	genome.wustl.edu	37	1	159923133	159923133	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033438.3	-1	reviewed	p.I119	0.000	233	0%	185	15.7%	0	-	-	-	-	superfamily_Immunoglobulin
SLAMF9	89886	genome.wustl.edu	37	1	159923161	159923161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033438.3	-1	reviewed	p.A110D	0.017	244	0%	191	16.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Immunoglobulin
IGSF8	93185	genome.wustl.edu	37	1	160063801	160063801	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052868.2	-1	provisional	p.S201	1.000	368	0.3%	257	15.6%	50	32%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ATP1A2	477	genome.wustl.edu	37	1	160093154	160093154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000702.3	+1	reviewed	p.F110S	1.000	311	0%	284	10.2%	0	-	benign(0.019)	deleterious(0)	neutral(0.446)	HMMPfam_Cation_ATPase_N,superfamily_SSF81665
ATP1A2	477	genome.wustl.edu	37	1	160100269	160100269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000702.3	+1	reviewed	p.T570M	0.997	258	0%	235	16.2%	1	0%	possibly_damaging(0.75)	tolerated(0.18)	neutral(0.331)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81660,superfamily_SSF81665
ATP1A4	480	genome.wustl.edu	37	1	160143396	160143396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.P627H	1.000	396	0%	388	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160144416	160144416	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.A730	0.055	188	0%	176	19.9%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
ATP1A4	480	genome.wustl.edu	37	1	160146312	160146312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.I837T	1.000	197	0%	184	10.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
CASQ1	844	genome.wustl.edu	37	1	160163622	160163622	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001231.4	+1	reviewed	p.V144	1.000	272	0.4%	257	15.2%	0	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
CASQ1	844	genome.wustl.edu	37	1	160169701	160169701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001231.4	+1	reviewed	p.V343I	1.000	81	0%	60	20%	1	0%	possibly_damaging(0.594)	tolerated(0.17)	neutral(0.264)	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
DCAF8	50717	genome.wustl.edu	37	1	160209745	160209745	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015726.3	-1	reviewed	p.L155	0.993	169	0%	147	15.6%	50	24%	-	-	-	superfamily_WD40 repeat-like
COPA	1314	genome.wustl.edu	37	1	160283886	160283886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.R246W	1.000	250	0.8%	202	19.3%	162	24%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
VANGL2	57216	genome.wustl.edu	37	1	160395013	160395013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020335.1	+1	validated	p.G471S	0.997	235	0%	242	21.1%	7	0%	benign(0.009)	tolerated(0.6)	neutral(0.005)	HMMPfam_Strabismus
SLAMF1	6504	genome.wustl.edu	37	1	160607313	160607313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003037.2	-1	validated	p.R28H	0.000	224	0%	223	17.5%	0	-	benign(0.031)	tolerated(0.3)	neutral(0.030)	HMMPfam_SLAM
SLAMF7	57823	genome.wustl.edu	37	1	160718189	160718189	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021181.3	+1	provisional	p.G87	0.018	210	0%	269	15.6%	5	0%	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
SLAMF7	57823	genome.wustl.edu	37	1	160718303	160718303	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021181.3	+1	provisional	p.Y125	0.987	191	0%	206	17%	8	0%	-	-	-	HMMPfam_V-set,superfamily_Immunoglobulin
LY9	4063	genome.wustl.edu	37	1	160771649	160771649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033667.1	+1	validated	p.G175D	0.980	73	0%	64	17.2%	0	-	unknown(0)	deleterious(0)	-	NULL
CD244	51744	genome.wustl.edu	37	1	160801205	160801205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016382.3	-1	reviewed	p.Q344K	0.000	432	0%	386	12.4%	0	-	possibly_damaging(0.662)	tolerated(0.21)	neutral(0.278)	NULL
ITLN2	142683	genome.wustl.edu	37	1	160920430	160920430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080878.2	-1	validated	p.Q171H	0.000	190	0%	164	17.7%	0	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	superfamily_Fibrinogen C-terminal domain-like
USF1	7391	genome.wustl.edu	37	1	161010028	161010028	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007122.3	-1	reviewed	p.D269	0.987	489	0%	418	15.3%	107	19.6%	unknown(0)	-	-	superfamily_HLH helix-loop-helix DNA-binding domain
ARHGAP30	257106	genome.wustl.edu	37	1	161017804	161017804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025598.1	-1	validated	p.L1003I	0.036	170	0%	133	18.8%	12	0%	benign(0.111)	deleterious(0)	neutral(0.453)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161017902	161017902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025598.1	-1	validated	p.R970Q	1.000	182	0%	126	22.2%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161018043	161018043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025598.1	-1	validated	p.R923H	0.997	129	0%	96	16.7%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARHGAP30	257106	genome.wustl.edu	37	1	161019397	161019397	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025598.1	-1	validated	p.S501	0.681	111	0%	91	23.1%	8	0%	-	-	-	NULL
PVRL4	81607	genome.wustl.edu	37	1	161044092	161044092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030916.2	-1	validated	p.A358T	0.006	176	0%	133	17.3%	7	28.5%	possibly_damaging(0.621)	deleterious(0.02)	deleterious(0.600)	NULL
PVRL4	81607	genome.wustl.edu	37	1	161049492	161049492	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030916.2	-1	validated	p.D109	0.979	35	0%	30	26.7%	12	16.6%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
USP21	27005	genome.wustl.edu	37	1	161132833	161132833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014443.2	+1	reviewed	p.G340*	0.982	205	0%	171	14.6%	49	6.1%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
PPOX	5498	genome.wustl.edu	37	1	161140454	161140454	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000309.3	+1	reviewed	p.G381	0.099	211	0%	146	15.1%	20	15%	-	-	-	HMMPfam_Amino_oxidase
B4GALT3	8703	genome.wustl.edu	37	1	161141721	161141721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.R356H	0.924	95	0%	84	16.7%	217	17%	possibly_damaging(0.438)	tolerated(0.1)	neutral(0.429)	NULL
B4GALT3	8703	genome.wustl.edu	37	1	161144906	161144906	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.R122	0.823	206	0%	157	17.2%	195	16.9%	-	-	-	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
ADAMTS4	9507	genome.wustl.edu	37	1	161167976	161167976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005099.4	-1	reviewed	p.A148S	1.000	135	0%	123	10.6%	1	0%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_Pep_M12B_propep
NDUFS2	4720	genome.wustl.edu	37	1	161176354	161176354	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004550.4	+1	reviewed	p.T120	0.011	97	1%	68	14.7%	301	25.5%	-	-	-	PatternScan_COMPLEX1_49K,superfamily_SSF56762
NR1I3	9970	genome.wustl.edu	37	1	161200569	161200569	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506209	-1	known	p.H288	0.000	194	0%	159	14.5%	0	-	-	-	-	HMMSmart_SM00430
MPZ	4359	genome.wustl.edu	37	1	161277196	161277196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000530.6	-1	reviewed	p.A39V	1.000	109	0%	99	17.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_V-set
C1orf192	257177	genome.wustl.edu	37	1	161334888	161334888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013625.2	-1	predicted	p.T134N	0.962	202	0%	156	17.9%	32	28.1%	probably_damaging(0.978)	tolerated(0.4)	neutral(0.436)	NULL
HSPA6	3310	genome.wustl.edu	37	1	161495245	161495245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002155.3	+1	validated	p.R266H	1.000	28	0%	26	15.4%	56	28.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
HSPA6	3310	genome.wustl.edu	37	1	161495440	161495440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002155.3	+1	validated	p.A331V	1.000	40	0%	39	12.8%	39	10.2%	benign(0.001)	deleterious(0.02)	neutral(0.383)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
FCGR2C	9103	genome.wustl.edu	37	1	161561150	161561150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201563.4	+1	reviewed	p.T203M	0.000	284	0.4%	241	17%	6	0%	benign(0.159)	tolerated(0.38)	neutral(0.032)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCGR2B	2213	genome.wustl.edu	37	1	161641232	161641232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004001.3	+1	validated	p.L62F	0.839	292	0%	265	15.8%	2	0%	probably_damaging(0.966)	tolerated(0.28)	neutral(0.440)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
FCGR2B	2213	genome.wustl.edu	37	1	161642989	161642989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004001.3	+1	validated	p.S206P	0.000	190	0%	184	10.3%	2	0%	probably_damaging(0.963)	tolerated(0.1)	deleterious(0.692)	HMMSmart_SM00409,superfamily_Immunoglobulin
FCRLA	84824	genome.wustl.edu	37	1	161681071	161681071	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032738.3	+1	reviewed	p.W119*	1.000	66	0%	76	23.7%	2	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
ATF6	22926	genome.wustl.edu	37	1	161762060	161762060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.L211F	0.547	715	0%	949	19.7%	67	28.3%	probably_damaging(0.99)	tolerated(0.25)	deleterious(0.478)	NULL
ATF6	22926	genome.wustl.edu	37	1	161790890	161790890	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.R376*	1.000	277	0%	317	20.8%	38	0%	-	-	-	NULL
ATF6	22926	genome.wustl.edu	37	1	161830048	161830048	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.E529*	1.000	172	0%	191	18.3%	67	0%	-	-	-	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161967859	161967859	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.L410	0.000	118	0%	95	13.7%	13	0%	-	-	-	NULL
OLFML2B	25903	genome.wustl.edu	37	1	161987265	161987265	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.A157	0.861	227	0%	233	17.6%	7	0%	-	-	-	NULL
NOS1AP	9722	genome.wustl.edu	37	1	162124246	162124246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014697.2	+1	reviewed	p.A53T	1.000	72	0%	67	28.4%	18	5.5%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
UHMK1	127933	genome.wustl.edu	37	1	162470029	162470029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175866.4	+1	reviewed	p.G185C	1.000	159	0%	116	19.8%	40	25%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UHMK1	127933	genome.wustl.edu	37	1	162470777	162470777	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175866.4	+1	reviewed	p.G212	1.000	252	0%	200	22%	34	32.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UAP1	6675	genome.wustl.edu	37	1	162551152	162551152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003115.4	+1	validated	p.S246I	0.379	367	0%	409	15.6%	126	19%	benign(0.045)	deleterious(0.02)	neutral(0.386)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
UAP1	6675	genome.wustl.edu	37	1	162560283	162560283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003115.4	+1	validated	p.R447H	0.985	263	0.4%	340	20%	164	18.9%	benign(0.036)	tolerated(0.26)	neutral(0.036)	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases
LOC100287509	100287509	genome.wustl.edu	37	1	162949533	162949533	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342119.1	-1	model	p.I17	0.994	78	0%	69	13%	0	-	-	-	-	HMMPfam_COX7B
RGS5	8490	genome.wustl.edu	37	1	163117223	163117223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003617.3	-1	validated	p.D152G	0.997	329	0%	347	15.6%	27	3.7%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
NUF2	83540	genome.wustl.edu	37	1	163295897	163295897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031423.3	+1	reviewed	p.R19H	1.000	428	0%	382	18.1%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nuf2
NUF2	83540	genome.wustl.edu	37	1	163310153	163310153	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031423.3	+1	reviewed	e8-1	0.707	300	0%	350	18.3%	1	0%	-	-	-	-
RXRG	6258	genome.wustl.edu	37	1	165389155	165389155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006917.3	-1	reviewed	p.G132R	0.536	234	0%	226	16.4%	12	25%	benign(0.004)	tolerated(0.53)	neutral(0.007)	NULL
TADA1	117143	genome.wustl.edu	37	1	166826822	166826822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053053.3	-1	validated	p.E330D	0.991	247	0%	214	14%	23	39.1%	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
TADA1	117143	genome.wustl.edu	37	1	166827418	166827418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053053.3	-1	validated	p.G265R	0.991	202	0%	185	14.6%	34	29.4%	possibly_damaging(0.527)	tolerated(0.07)	deleterious(0.497)	NULL
ILDR2	387597	genome.wustl.edu	37	1	166905905	166905905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199351.1	-1	provisional	p.C209Y	1.000	79	0%	71	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LSR
ILDR2	387597	genome.wustl.edu	37	1	166926018	166926018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199351.1	-1	provisional	p.D151Y	1.000	379	0%	400	10.5%	0	-	possibly_damaging(0.681)	deleterious(0.01)	deleterious(0.649)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MAEL	84944	genome.wustl.edu	37	1	166990948	166990948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032858.1	+1	validated	p.S387	0.984	263	0%	288	14.9%	0	-	-	-	-	NULL
GPA33	10223	genome.wustl.edu	37	1	167024998	167024998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005814.1	-1	reviewed	p.Q220H	0.009	308	0.3%	239	17.6%	1	0%	possibly_damaging(0.868)	deleterious(0.03)	deleterious(0.702)	HMMSmart_SM00409,superfamily_Immunoglobulin
GPA33	10223	genome.wustl.edu	37	1	167038278	167038278	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005814.1	-1	reviewed	p.D99A	0.080	75	0%	93	12.9%	2	0%	possibly_damaging(0.544)	deleterious(0.04)	deleterious(0.533)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
POU2F1	5451	genome.wustl.edu	37	1	167370700	167370700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002697.2	+1	provisional	p.P465T	0.996	128	0%	135	13.3%	4	25%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167779983	167779983	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.K1550fs	0.228	-	-	-	-	-	-	-	-	-	NULL
ADCY10	55811	genome.wustl.edu	37	1	167787339	167787339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.A1485T	0.903	224	0%	179	15.6%	0	-	possibly_damaging(0.894)	tolerated(0.28)	neutral(0.383)	superfamily_TPR-like
ADCY10	55811	genome.wustl.edu	37	1	167825526	167825526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.A683V	0.742	742	0.4%	793	20.6%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
DCAF6	55827	genome.wustl.edu	37	1	168032976	168032976	+	Silent	SNP	C	C	T	rs35293301	byCluster	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018442.2	+1	validated	p.G735	1.000	188	0%	185	13%	142	21.1%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
GPR161	23432	genome.wustl.edu	37	1	168065896	168065896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153832.1	-1	provisional	p.A317T	1.000	146	0%	137	13.1%	5	20%	possibly_damaging(0.711)	deleterious(0.01)	deleterious(0.663)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GPR161	23432	genome.wustl.edu	37	1	168066470	168066470	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153832.1	-1	provisional	p.R125	1.000	143	0%	96	14.6%	7	28.5%	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
DPT	1805	genome.wustl.edu	37	1	168698111	168698111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001937.3	-1	reviewed	p.E101G	1.000	156	0%	155	16.1%	1	0%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	NULL
BLZF1	8548	genome.wustl.edu	37	1	169346091	169346091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003666.2	+1	validated	p.E114D	0.762	485	0.2%	509	16.9%	23	21.7%	benign(0.007)	tolerated(0.19)	neutral(0.050)	NULL
C1orf114	57821	genome.wustl.edu	37	1	169390680	169390680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021179.1	-1	predicted	p.T330I	0.884	476	0.2%	463	15.8%	0	-	possibly_damaging(0.856)	tolerated(0.08)	deleterious(0.631)	NULL
F5	2153	genome.wustl.edu	37	1	169509717	169509717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.D1537E	0.000	203	0%	229	16.2%	1	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
F5	2153	genome.wustl.edu	37	1	169510772	169510772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.I1186V	0.000	816	0%	1011	18.5%	1	0%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_LSPR
F5	2153	genome.wustl.edu	37	1	169515748	169515748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.K565T	0.867	378	0%	412	19.4%	2	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	superfamily_Cupredoxins
F5	2153	genome.wustl.edu	37	1	169519050	169519050	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.Q534*	0.781	154	0%	168	24.4%	0	-	-	-	-	NULL
F5	2153	genome.wustl.edu	37	1	169521859	169521859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000130.4	-1	reviewed	p.P411L	0.000	213	0%	231	15.6%	1	0%	benign(0.006)	deleterious(0)	neutral(0.445)	superfamily_Cupredoxins
SELP	6403	genome.wustl.edu	37	1	169564016	169564016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003005.3	-1	reviewed	p.C734Y	0.998	203	0%	221	22.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SELL	6402	genome.wustl.edu	37	1	169677598	169677598	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000655.4	-1	reviewed	p.D144	0.947	353	0%	454	15%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
SELL	6402	genome.wustl.edu	37	1	169677676	169677676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000655.4	-1	reviewed	p.E118D	0.998	382	0.3%	468	15.6%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
SELL	6402	genome.wustl.edu	37	1	169677905	169677905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000655.4	-1	reviewed	p.H42R	1.000	114	0%	151	16.6%	5	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
SELE	6401	genome.wustl.edu	37	1	169699573	169699573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000450.2	-1	reviewed	p.V239M	0.977	267	0.4%	290	15.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Complement control module/SCR domain
SELE	6401	genome.wustl.edu	37	1	169702136	169702136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000450.2	-1	reviewed	p.L14R	0.776	126	0%	140	15%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00034
METTL18	92342	genome.wustl.edu	37	1	169762632	169762632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033418.1	-1	provisional	p.A69T	0.004	305	0%	269	16.4%	28	28.5%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
C1orf112	55732	genome.wustl.edu	37	1	169796322	169796322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.V327F	0.917	210	0.5%	205	20%	26	30.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C1orf112	55732	genome.wustl.edu	37	1	169801597	169801597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.L497I	0.464	324	0%	385	17.7%	20	15%	probably_damaging(0.973)	tolerated(0.22)	neutral(0.457)	NULL
C1orf112	55732	genome.wustl.edu	37	1	169806247	169806247	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.E573D	0.000	199	0%	305	12.1%	13	30.7%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
C1orf112	55732	genome.wustl.edu	37	1	169819427	169819427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.V729F	1.000	105	0%	95	22.1%	17	41.1%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
SCYL3	57147	genome.wustl.edu	37	1	169828226	169828226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181093.2	-1	validated	p.R423H	1.000	325	0%	347	16.1%	14	21.4%	benign(0.297)	tolerated(0.12)	neutral(0.353)	superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	169985714	169985714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014970.2	-1	reviewed	p.E358K	1.000	350	0%	486	16.5%	85	17.6%	probably_damaging(0.979)	tolerated(0.4)	neutral(0.438)	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat
KIFAP3	22920	genome.wustl.edu	37	1	170007543	170007543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014970.2	-1	reviewed	p.M135I	1.000	270	0.4%	299	13.7%	36	22.2%	benign(0)	tolerated(1)	-	HMMPfam_KAP,superfamily_ARM repeat
GORAB	92344	genome.wustl.edu	37	1	170508441	170508441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152281.2	+1	reviewed	p.L76R	0.989	267	0.4%	310	19.4%	41	24.3%	possibly_damaging(0.887)	tolerated(0.15)	deleterious(0.588)	NULL
GORAB	92344	genome.wustl.edu	37	1	170521211	170521211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152281.2	+1	reviewed	p.R265C	1.000	368	0%	398	15.8%	54	18.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf129	80133	genome.wustl.edu	37	1	170927626	170927626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025063.2	+1	validated	p.D33Y	0.054	389	0%	409	14.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FMO3	2328	genome.wustl.edu	37	1	171086355	171086355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002294.2	+1	reviewed	p.A458T	1.000	328	0.3%	392	16.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_FMO-like
FMO1	2326	genome.wustl.edu	37	1	171236864	171236864	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002021.1	+1	reviewed	p.Q105	0.972	277	0%	275	17.1%	1	0%	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171501586	171501586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.Q451H	0.656	108	0%	119	14.3%	41	19.5%	unknown(0)	deleterious(0.01)	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171501648	171501648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.R472I	1.000	103	0%	103	15.5%	23	13%	unknown(0)	deleterious(0)	-	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171511341	171511341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.G1577D	1.000	102	0%	94	12.8%	38	7.8%	unknown(0)	-	-	NULL
MYOC	4653	genome.wustl.edu	37	1	171605235	171605235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000261.1	-1	reviewed	p.V449I	0.125	414	0%	365	17.3%	1	0%	benign(0.004)	tolerated(0.27)	neutral(0.034)	HMMPfam_OLF,HMMSmart_SM00284
C1orf9	51430	genome.wustl.edu	37	1	172520731	172520731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.A48T	0.540	149	0%	154	20.1%	21	9.5%	benign(0.323)	deleterious(0)	deleterious(0.545)	NULL
C1orf9	51430	genome.wustl.edu	37	1	172539858	172539858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.S346N	1.000	70	0%	67	17.9%	32	25%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC
FASLG	356	genome.wustl.edu	37	1	172628574	172628574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000639.1	+1	reviewed	p.S78I	0.524	72	0%	64	12.5%	0	-	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
PRDX6	9588	genome.wustl.edu	37	1	173455471	173455471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004905.2	+1	reviewed	p.E159D	1.000	405	0%	446	17.9%	939	22.7%	benign(0.225)	deleterious(0)	neutral(0.467)	superfamily_Thioredoxin-like,HMMPfam_1-cysPrx_C
SLC9A11	284525	genome.wustl.edu	37	1	173474432	173474432	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.I1088	0.063	165	0%	159	20.8%	0	-	-	-	-	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173503715	173503715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.L628M	0.104	245	0.4%	365	14.2%	0	-	probably_damaging(0.993)	tolerated(0.21)	deleterious(0.494)	NULL
ANKRD45	339416	genome.wustl.edu	37	1	173616022	173616022	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198493.2	-1	validated	p.Y153*	0.829	377	0%	440	15.7%	0	-	-	-	-	superfamily_Ankyrin repeat
KLHL20	27252	genome.wustl.edu	37	1	173725142	173725142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014458.3	+1	reviewed	p.R311Q	1.000	181	0.6%	175	15.4%	14	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose oxidase central domain
DARS2	55157	genome.wustl.edu	37	1	173807388	173807388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018122.4	+1	reviewed	p.E277D	0.969	117	0%	95	14.7%	35	25.7%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_tRNA-synt_2,superfamily_SSF55681
DARS2	55157	genome.wustl.edu	37	1	173825848	173825848	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018122.4	+1	reviewed	p.Y573	0.197	224	0%	202	17.8%	49	14.2%	-	-	-	HMMPfam_tRNA-synt_2,superfamily_SSF55681
SERPINC1	462	genome.wustl.edu	37	1	173883827	173883827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.A91V	1.000	384	0%	383	16.4%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Serpin,superfamily_Prot_inh_serpin
SERPINC1	462	genome.wustl.edu	37	1	173883863	173883863	+	Missense_Mutation	SNP	C	C	T	rs121909552	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.R79H	0.999	439	0.2%	425	16.2%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Serpin,superfamily_Prot_inh_serpin
RC3H1	149041	genome.wustl.edu	37	1	173907947	173907947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.S1105I	1.000	197	0%	235	17%	4	25%	benign(0.012)	deleterious(0.01)	neutral(0.406)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173931091	173931091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.Q658H	1.000	338	0%	317	16.4%	6	50%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
RC3H1	149041	genome.wustl.edu	37	1	173952678	173952678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.A157V	1.000	491	0.2%	419	17.4%	8	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174668743	174668743	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014857.3	+1	validated	p.F660	1.000	207	0.5%	241	17%	13	7.6%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TNN	63923	genome.wustl.edu	37	1	175046867	175046867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.V105I	0.001	101	0%	59	13.6%	0	-	benign(0.363)	tolerated(0.09)	neutral(0.412)	NULL
TNN	63923	genome.wustl.edu	37	1	175063271	175063271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.H490	0.284	73	0%	68	20.6%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175092608	175092608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.V908A	0.425	633	0.2%	638	11.3%	0	-	possibly_damaging(0.924)	tolerated(1)	neutral(0.373)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175096130	175096130	+	Missense_Mutation	SNP	C	C	T	rs182894731	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.T985M	0.012	415	0%	390	15.4%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNN	63923	genome.wustl.edu	37	1	175104981	175104981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.V1111I	1.000	213	0%	168	16.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
TNR	7143	genome.wustl.edu	37	1	175293513	175293513	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.Y1312	0.902	296	0%	301	19.9%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
TNR	7143	genome.wustl.edu	37	1	175348850	175348850	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.R601*	0.986	117	0%	148	10.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNR	7143	genome.wustl.edu	37	1	175365738	175365738	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422274	-1	known	p.R119C	1.000	121	0%	92	15.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RFWD2	64326	genome.wustl.edu	37	1	175958605	175958605	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022457.5	-1	validated	p.V580	1.000	216	0%	186	12.9%	114	17.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RFWD2	64326	genome.wustl.edu	37	1	176085769	176085769	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022457.5	-1	validated	p.G339	1.000	937	0%	976	14.4%	83	18%	-	-	-	superfamily_WD40 repeat-like
RFWD2	64326	genome.wustl.edu	37	1	176132105	176132105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022457.5	-1	validated	p.I221T	1.000	228	0%	288	21.2%	34	35.2%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176640203	176640203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.A697T	1.000	406	0%	645	17.2%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
PAPPA2	60676	genome.wustl.edu	37	1	176675534	176675534	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.S1135	0.392	163	0%	212	9.9%	0	-	-	-	-	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176675579	176675579	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.N1150	0.999	150	0%	188	10.6%	2	0%	-	-	-	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176709306	176709306	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.D1375	0.064	205	0%	285	16.1%	1	100%	-	-	-	NULL
ASTN1	460	genome.wustl.edu	37	1	176852108	176852108	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450659	-1	known	p.T374M	0.494	269	0%	209	18.2%	0	-	-	-	-	superfamily_Fibronectin type III
ASTN1	460	genome.wustl.edu	37	1	176992701	176992701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004319.1	-1	validated	p.R426H	1.000	91	0%	50	28%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FAM5B	57795	genome.wustl.edu	37	1	177242701	177242701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021165.2	+1	provisional	p.Q249H	1.000	95	0%	87	16.1%	0	-	benign(0.008)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00457
FAM5B	57795	genome.wustl.edu	37	1	177250008	177250008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021165.2	+1	provisional	p.V566M	1.000	126	0%	102	18.6%	0	-	benign(0.429)	tolerated(1)	neutral(0.140)	NULL
SEC16B	89866	genome.wustl.edu	37	1	177929933	177929933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033127.2	-1	validated	p.S310I	1.000	43	0%	43	18.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178426967	178426967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.S836I	1.000	352	0%	333	24.6%	9	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RASAL2	9462	genome.wustl.edu	37	1	178433465	178433465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170692.2	+1	reviewed	p.A1091V	1.000	158	0%	143	12.6%	7	14.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ANGPTL1	9068	genome.wustl.edu	37	1	178834797	178834797	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415564	-1	known	e1+1	0.976	348	0%	353	16.1%	8	25%	benign(0.031)	deleterious(0.02)	neutral(0.385)	-
TOR3A	64222	genome.wustl.edu	37	1	179054922	179054922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022371.3	+1	validated	p.R178Q	0.982	61	0%	49	16.3%	87	16%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases
AXDND1	126859	genome.wustl.edu	37	1	179502986	179502986	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144696.4	+1	validated	p.V924	0.965	390	0%	451	20.6%	0	-	-	-	-	NULL
NPHS2	7827	genome.wustl.edu	37	1	179528824	179528824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014625.2	-1	reviewed	p.P175H	0.998	52	0%	48	27.1%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Band_7,HMMSmart_SM00244
TDRD5	163589	genome.wustl.edu	37	1	179620015	179620015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173533.2	+1	provisional	p.S605L	0.055	676	0.1%	718	16.6%	1	0%	benign(0.019)	tolerated(0.21)	neutral(0.045)	NULL
TDRD5	163589	genome.wustl.edu	37	1	179631286	179631286	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173533.2	+1	provisional	p.G736	1.000	430	0.5%	446	15%	3	33.3%	-	-	-	NULL
TOR1AIP2	163590	genome.wustl.edu	37	1	179819995	179819995	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145034.3	-1	validated	p.R180*	0.954	207	0.5%	203	20.7%	18	0%	-	-	-	HMMPfam_LAP1C
TOR1AIP1	26092	genome.wustl.edu	37	1	179870518	179870518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015602.2	+1	validated	p.S245Y	0.033	206	0%	193	20.2%	47	36.1%	possibly_damaging(0.775)	tolerated(0.12)	deleterious(0.549)	HMMPfam_LAP1C
CEP350	9857	genome.wustl.edu	37	1	179983377	179983377	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.R597*	1.000	174	0%	139	15.1%	4	0%	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180010799	180010799	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418229	+1	known	p.P17T	0.998	131	0.8%	116	18.1%	5	0%	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	180013226	180013226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.T1514S	0.001	41	0%	56	19.6%	3	0%	benign(0.005)	tolerated(0.48)	neutral(0.011)	NULL
CEP350	9857	genome.wustl.edu	37	1	180053158	180053158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.T2044A	1.000	75	0%	81	25.9%	10	20%	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	NULL
KIAA1614	57710	genome.wustl.edu	37	1	180913547	180913547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.R1061Q	1.000	57	0%	33	15.2%	9	11.1%	probably_damaging(0.963)	deleterious(0.05)	deleterious(0.751)	NULL
MR1	3140	genome.wustl.edu	37	1	181019190	181019190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001531.1	+1	provisional	p.E124D	0.965	165	0%	138	16.7%	2	50%	benign(0.004)	tolerated(0.59)	neutral(0.004)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
CACNA1E	777	genome.wustl.edu	37	1	181686228	181686228	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	e11-1	1.000	218	0%	193	16.1%	0	-	-	-	-	-
CACNA1E	777	genome.wustl.edu	37	1	181762881	181762881	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357570	+1	known	p.A1993	1.000	68	0%	54	20.4%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181767670	181767670	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.P2171	0.001	79	0%	65	23.1%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181767744	181767744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.S2196F	1.000	39	0%	39	17.9%	0	-	benign(0.311)	deleterious(0.01)	deleterious(0.503)	NULL
GLUL	2752	genome.wustl.edu	37	1	182353586	182353586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033044.2	-1	reviewed	p.C359Y	1.000	103	0%	86	11.6%	647	16.2%	possibly_damaging(0.91)	deleterious(0.01)	deleterious(0.768)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
GLUL	2752	genome.wustl.edu	37	1	182354990	182354990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033044.2	-1	reviewed	p.A170S	1.000	564	0.2%	562	14.4%	549	13.2%	benign(0.206)	tolerated(0.23)	neutral(0.061)	HMMPfam_Gln-synt_C,superfamily_Glutamine synthetase/guanido kinase
TEDDM1	127670	genome.wustl.edu	37	1	182369054	182369054	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172000.3	-1	validated	p.D189	0.024	205	0%	186	23.1%	0	-	-	-	-	HMMPfam_DUF716
TEDDM1	127670	genome.wustl.edu	37	1	182369411	182369411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172000.3	-1	validated	p.Q70H	1.000	271	0%	278	24.1%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
RNASEL	6041	genome.wustl.edu	37	1	182554538	182554538	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021133.2	-1	reviewed	p.I468	0.060	449	0%	439	18.5%	11	9%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RNASEL	6041	genome.wustl.edu	37	1	182554654	182554654	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021133.2	-1	reviewed	p.L430	0.000	357	0%	369	18.4%	1	0%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RNASEL	6041	genome.wustl.edu	37	1	182555785	182555785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021133.2	-1	reviewed	p.F53L	0.001	243	0%	248	13.3%	0	-	possibly_damaging(0.539)	tolerated(0.18)	neutral(0.238)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
RGS16	6004	genome.wustl.edu	37	1	182569591	182569591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002928.3	-1	reviewed	p.A149S	0.000	127	0%	131	19.8%	22	13.6%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
DHX9	1660	genome.wustl.edu	37	1	182835593	182835593	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.S449	1.000	305	0%	344	17.2%	117	30.7%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX9	1660	genome.wustl.edu	37	1	182845677	182845677	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	e17+1	1.000	242	0%	255	16.5%	11	72.7%	-	-	-	-
SHCBP1L	81626	genome.wustl.edu	37	1	182909644	182909644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030933.2	-1	validated	p.R197H	0.999	210	0%	214	20.6%	0	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
LAMC1	3915	genome.wustl.edu	37	1	183079642	183079642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.A292T	1.000	338	0%	355	17.7%	71	18.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
LAMC1	3915	genome.wustl.edu	37	1	183079744	183079744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.R326W	1.000	396	0.3%	390	14.4%	56	35.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
LAMC1	3915	genome.wustl.edu	37	1	183084656	183084656	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.G404	0.996	340	0%	314	19.7%	49	20.4%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept
LAMC1	3915	genome.wustl.edu	37	1	183086816	183086816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.G612D	1.000	296	0%	281	13.5%	82	9.7%	possibly_damaging(0.662)	tolerated(0.15)	deleterious(0.475)	HMMPfam_Laminin_B,superfamily_Grow_fac_recept,HMMSmart_LamB
LAMC1	3915	genome.wustl.edu	37	1	183111824	183111824	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.R1577*	0.968	288	0%	200	21%	232	24.5%	-	-	-	NULL
LAMC2	3918	genome.wustl.edu	37	1	183184586	183184586	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	e3-2	1.000	236	0.4%	260	17.7%	0	-	-	-	-	-
LAMC2	3918	genome.wustl.edu	37	1	183208676	183208676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005562.2	+1	reviewed	p.E1016G	0.482	180	0%	196	15.3%	22	18.1%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
SMG7	9887	genome.wustl.edu	37	1	183520223	183520223	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515829	+1	known	p.L769I	0.998	196	0%	229	21.4%	119	26%	-	-	-	NULL
GLT25D2	23127	genome.wustl.edu	37	1	183908060	183908060	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015101.2	-1	validated	p.T572	0.066	142	0%	117	19.7%	15	20%	-	-	-	NULL
FAM129A	116496	genome.wustl.edu	37	1	184853814	184853814	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.K185T	0.850	145	0%	147	18.4%	7	14.2%	possibly_damaging(0.604)	tolerated(0.28)	neutral(0.241)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184859287	184859287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.D130Y	0.990	224	0%	229	14.8%	9	0%	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184868316	184868316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.T61I	1.000	494	0.2%	646	14.6%	9	33.3%	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	NULL
RNF2	6045	genome.wustl.edu	37	1	185056767	185056767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007212.3	+1	reviewed	p.P28S	1.000	226	0.4%	236	16.1%	51	21.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_RING/U-box
SWT1	54823	genome.wustl.edu	37	1	185144101	185144101	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105518.1	+1	validated	p.Q274	0.000	274	0%	266	18.8%	6	16.6%	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185962358	185962358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R1141H	0.989	193	0%	279	16.5%	1	0%	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186023119	186023119	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	e44+1	1.000	266	0%	435	21.6%	0	-	-	-	-	-
HMCN1	83872	genome.wustl.edu	37	1	186083146	186083146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.V3723I	0.097	667	0.1%	682	20.4%	1	0%	benign(0.004)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186083180	186083180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.C3734Y	1.000	536	0.2%	542	19%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186088379	186088379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.A3969T	0.999	464	0%	546	16.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186092100	186092100	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.P4083S	0.002	346	0%	373	12.9%	2	0%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186113321	186113321	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.S4647	0.001	267	0%	298	16.1%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
HMCN1	83872	genome.wustl.edu	37	1	186140577	186140577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.C5228Y	1.000	568	0%	675	17.2%	5	0%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
PRG4	10216	genome.wustl.edu	37	1	186277880	186277880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005807.3	+1	reviewed	p.R1010I	0.019	235	0%	262	10.7%	0	-	unknown(0)	-	-	NULL
TPR	7175	genome.wustl.edu	37	1	186296633	186296633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.D1950N	1.000	102	0%	120	11.7%	91	32.9%	benign(0.355)	tolerated(0.07)	neutral(0.431)	NULL
C1orf27	54953	genome.wustl.edu	37	1	186386786	186386786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017847.5	+1	validated	p.G433C	1.000	50	0%	45	24.4%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTGS2	5743	genome.wustl.edu	37	1	186645692	186645692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000963.2	-1	reviewed	p.R293W	0.947	270	0%	271	21.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
FAM5C	339479	genome.wustl.edu	37	1	190067919	190067919	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.V510	0.998	342	0%	287	18.1%	2	0%	-	-	-	NULL
RGS1	5996	genome.wustl.edu	37	1	192547510	192547510	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002922.3	+1	reviewed	p.K147fs	0.999	-	-	-	-	-	-	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
RGS13	6003	genome.wustl.edu	37	1	192628557	192628557	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002927.3	+1	reviewed	p.V128	0.861	168	0%	210	21.9%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
RGS2	5997	genome.wustl.edu	37	1	192780653	192780653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002923.3	+1	reviewed	p.R188H	0.997	537	0.2%	548	10.6%	31	6.4%	benign(0.363)	deleterious(0)	deleterious(0.560)	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
CDC73	79577	genome.wustl.edu	37	1	193107303	193107303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024529.4	+1	reviewed	p.R171K	1.000	450	0%	402	15.9%	61	13.1%	benign(0.005)	tolerated(0.55)	neutral(0.007)	NULL
CFH	3075	genome.wustl.edu	37	1	196659276	196659276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	p.A415T	0.000	290	0%	387	19.1%	8	12.5%	benign(0.023)	tolerated(0.22)	neutral(0.043)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196694328	196694328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	p.V592M	0.050	307	0%	412	17%	8	0%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFH	3075	genome.wustl.edu	37	1	196716390	196716390	+	Nonsense_Mutation	SNP	C	C	T	rs121913051		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000186.3	+1	reviewed	p.R1215*	0.013	346	0%	332	16.3%	8	12.5%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CFHR3	10878	genome.wustl.edu	37	1	196748369	196748369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021023.5	+1	reviewed	p.A46P	0.000	152	0%	258	23.6%	0	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196883721	196883721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006684.2	+1	validated	p.G179V	0.956	174	0%	191	18.3%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CFHR4	10877	genome.wustl.edu	37	1	196884270	196884270	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006684.2	+1	validated	e5+2	0.516	275	0%	351	13.7%	0	-	-	-	-	-
F13B	2165	genome.wustl.edu	37	1	197024882	197024882	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001994.2	-1	reviewed	p.C439	0.426	381	0%	545	16%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197059058	197059058	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	e25+2	1.000	309	0%	462	16%	1	100%	-	-	-	-
ASPM	259266	genome.wustl.edu	37	1	197059517	197059517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.A3213V	1.000	169	0%	222	18.9%	29	10.3%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197060075	197060075	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R3181*	0.001	235	0%	397	22.2%	30	16.6%	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197061126	197061126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.L3119M	0.998	259	0%	410	16.3%	11	36.3%	probably_damaging(0.97)	tolerated(0.26)	neutral(0.447)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073381	197073381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.R1667H	0.965	233	0%	326	22.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073428	197073428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.M1651I	0.000	270	0%	356	18.5%	3	33.3%	benign(0.113)	tolerated(0.53)	neutral(0.017)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197112756	197112756	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.N209T	0.008	237	0%	251	18.3%	7	0%	benign(0.282)	deleterious(0.01)	deleterious(0.492)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197144170	197144170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.S652I	1.000	282	0.4%	354	19.2%	17	0%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197147552	197147552	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.S589	0.915	209	0%	225	14.7%	11	18.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197168498	197168498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.T369I	0.962	301	0%	309	16.5%	8	25%	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CRB1	23418	genome.wustl.edu	37	1	197297633	197297633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201253.1	+1	reviewed	p.D51G	0.079	184	0%	194	23.2%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMSmart_SM00181,superfamily_EGF/Laminin
CRB1	23418	genome.wustl.edu	37	1	197325961	197325961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201253.1	+1	reviewed	p.G330V	1.000	135	0%	130	14.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
CRB1	23418	genome.wustl.edu	37	1	197390835	197390835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201253.1	+1	reviewed	p.A626V	0.001	623	0%	643	18.7%	1	0%	possibly_damaging(0.905)	tolerated(0.25)	neutral(0.396)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CRB1	23418	genome.wustl.edu	37	1	197446899	197446899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201253.1	+1	reviewed	p.N1371D	0.834	132	0%	167	15.6%	0	-	unknown(0)	-	-	NULL
DENND1B	163486	genome.wustl.edu	37	1	197522162	197522162	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142795.1	-1	validated	p.G390	1.000	353	0%	453	19.9%	7	42.8%	-	-	-	NULL
NEK7	140609	genome.wustl.edu	37	1	198248186	198248186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133494.2	+1	validated	p.S195Y	1.000	155	0%	166	16.9%	39	28.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTPRC	5788	genome.wustl.edu	37	1	198671583	198671583	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.T167	0.002	848	0%	828	14.5%	2	0%	-	-	-	NULL
PTPRC	5788	genome.wustl.edu	37	1	198676013	198676013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.A277V	0.000	465	0%	486	14%	2	0%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
PTPRC	5788	genome.wustl.edu	37	1	198718618	198718618	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.S1002	0.151	364	0%	535	16.6%	9	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
NR5A2	2494	genome.wustl.edu	37	1	200012979	200012979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.S94P	1.000	90	0%	88	18.2%	1	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NR5A2	2494	genome.wustl.edu	37	1	200014583	200014583	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.R112*	1.000	152	0%	114	19.3%	4	0%	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NR5A2	2494	genome.wustl.edu	37	1	200017459	200017459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.T208I	1.000	393	0%	345	18.3%	3	33.3%	possibly_damaging(0.446)	tolerated(0.44)	neutral(0.159)	superfamily_Nuclear receptor ligand-binding domain
FAM58BP	339521	genome.wustl.edu	37	1	200182942	200182942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.A84V	0.999	318	0.3%	318	15.7%	0	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
ZNF281	23528	genome.wustl.edu	37	1	200377099	200377099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012482.3	-1	provisional	p.A579S	0.538	91	0%	93	14%	23	26%	benign(0.079)	tolerated(0.14)	neutral(0.255)	NULL
KIF14	9928	genome.wustl.edu	37	1	200587167	200587167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014875.2	-1	validated	p.V229I	0.003	351	0%	385	14.3%	5	0%	benign(0.391)	deleterious(0.04)	deleterious(0.474)	NULL
DDX59	83479	genome.wustl.edu	37	1	200619761	200619761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031725.4	-1	validated	p.D369G	1.000	268	0%	246	13.8%	16	18.7%	possibly_damaging(0.881)	deleterious(0.03)	deleterious(0.708)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CAMSAP2	23271	genome.wustl.edu	37	1	200730015	200730015	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.D63V	1.000	463	0%	513	18.3%	17	29.4%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
C1orf106	55765	genome.wustl.edu	37	1	200880634	200880634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018265.2	+1	validated	p.R423H	1.000	139	0%	107	18.7%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF21B	23046	genome.wustl.edu	37	1	200946393	200946393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.G1411	1.000	166	0%	100	23%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KIF21B	23046	genome.wustl.edu	37	1	200974788	200974788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.S161N	0.985	140	0%	122	12.3%	0	-	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF21B	23046	genome.wustl.edu	37	1	200977939	200977939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.G135	0.000	304	0%	285	17.2%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF21B	23046	genome.wustl.edu	37	1	200978517	200978517	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.A47	1.000	242	0%	201	15.9%	2	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CACNA1S	779	genome.wustl.edu	37	1	201009388	201009388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.A1781S	0.021	124	0%	90	17.8%	0	-	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
CACNA1S	779	genome.wustl.edu	37	1	201046247	201046247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.T543M	0.999	136	0%	155	21.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1S	779	genome.wustl.edu	37	1	201052335	201052335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.A450T	1.000	67	0%	54	16.7%	0	-	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF81324
IGFN1	91156	genome.wustl.edu	37	1	201186478	201186478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451870	+1	known	p.T763I	0.265	84	0%	69	26.1%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PKP1	5317	genome.wustl.edu	37	1	201287757	201287757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	p.N356D	1.000	109	0%	87	14.9%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PKP1	5317	genome.wustl.edu	37	1	201289433	201289433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	p.R445H	1.000	68	0%	50	16%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
CSRP1	1465	genome.wustl.edu	37	1	201459432	201459432	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004078.2	-1	reviewed	p.V51	0.919	49	0%	48	29.2%	200	19%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
NAV1	89796	genome.wustl.edu	37	1	201755602	201755602	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430015	+1	known	p.P522S	1.000	498	0%	444	19.4%	9	0%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201778599	201778599	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.G1442	0.007	105	0%	90	11.1%	3	0%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201778646	201778646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.A1458D	0.999	127	0%	101	12.9%	4	0%	benign(0.027)	tolerated(0.25)	neutral(0.038)	superfamily_SSF52540
IPO9	55705	genome.wustl.edu	37	1	201825007	201825007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018085.4	+1	validated	p.A356V	1.000	195	0%	173	13.3%	41	19.5%	benign(0.001)	tolerated(1)	-	superfamily_ARM repeat
SHISA4	149345	genome.wustl.edu	37	1	201858623	201858623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198149.2	+1	validated	p.H42Y	1.000	111	0%	99	14.1%	12	16.6%	benign(0.17)	deleterious(0)	neutral(0.460)	NULL
ELF3	1999	genome.wustl.edu	37	1	201980290	201980290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114309.1	+1	validated	p.N9S	1.000	128	0%	98	13.3%	152	18.4%	possibly_damaging(0.799)	tolerated(0.2)	neutral(0.350)	NULL
ARL8A	127829	genome.wustl.edu	37	1	202103616	202103616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138795.2	-1	validated	p.H180Q	1.000	88	0%	84	15.5%	88	21.5%	possibly_damaging(0.664)	tolerated(0.2)	neutral(0.284)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
LGR6	59352	genome.wustl.edu	37	1	202287710	202287710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017403.1	+1	reviewed	p.R760L	0.055	58	0%	61	14.8%	0	-	possibly_damaging(0.789)	tolerated(0.1)	deleterious(0.583)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R12B	4660	genome.wustl.edu	37	1	202411700	202411700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032105.2	+1	reviewed	p.R556M	1.000	190	0%	164	15.2%	2	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PPP1R12B	4660	genome.wustl.edu	37	1	202418186	202418186	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032105.2	+1	reviewed	p.P579	0.018	174	0%	168	18.5%	4	0%	-	-	-	NULL
KDM5B	10765	genome.wustl.edu	37	1	202698951	202698951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.R1461C	0.740	489	0%	477	17.2%	199	23.1%	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	NULL
KDM5B	10765	genome.wustl.edu	37	1	202702572	202702572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.S1289N	1.000	181	0%	193	16.6%	194	22.6%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
KDM5B	10765	genome.wustl.edu	37	1	202704716	202704716	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	e22-1	1.000	205	0%	234	15.8%	0	-	-	-	-	-
KDM5B	10765	genome.wustl.edu	37	1	202705384	202705384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.V1074A	1.000	176	0.6%	151	23.2%	79	21.5%	benign(0)	tolerated(1)	-	HMMPfam_PLU-1
ADIPOR1	51094	genome.wustl.edu	37	1	202915701	202915701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127687.1	-1	validated	p.V99A	1.000	242	0%	226	13.7%	255	22.3%	benign(0.002)	tolerated(0.78)	neutral(0.001)	NULL
PPFIA4	8497	genome.wustl.edu	37	1	203015073	203015073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367238	+1	known	p.K321N	0.777	231	0.4%	168	10.7%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYOG	4656	genome.wustl.edu	37	1	203055009	203055009	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002479.4	-1	reviewed	p.L27	0.993	78	0%	85	18.8%	0	-	-	-	-	HMMPfam_Basic,HMMSmart_SM00520
CHI3L1	1116	genome.wustl.edu	37	1	203155740	203155740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001276.2	-1	reviewed	p.K4N	0.145	203	0.5%	162	19.8%	8	0%	possibly_damaging(0.602)	deleterious(0.03)	deleterious(0.573)	NULL
CHIT1	1118	genome.wustl.edu	37	1	203191412	203191412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003465.2	-1	reviewed	p.G216D	1.000	94	0%	74	23%	5	0%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
ATP2B4	493	genome.wustl.edu	37	1	203677130	203677130	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.I485	0.179	300	0%	299	19.7%	98	19.3%	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2B4	493	genome.wustl.edu	37	1	203693059	203693059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458092	+1	known	p.A12V	0.976	386	0.3%	335	19.1%	124	20.1%	-	-	-	HMMPfam_Cation_ATPase_C
ATP2B4	493	genome.wustl.edu	37	1	203693072	203693072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001684.3	+1	reviewed	p.L1030M	0.789	379	0%	322	18%	109	22%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
LAX1	54900	genome.wustl.edu	37	1	203741238	203741238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017773.3	+1	validated	p.S118I	1.000	176	0%	155	11%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZC3H11A	9877	genome.wustl.edu	37	1	203800873	203800873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014827.4	+1	validated	p.R262M	1.000	81	0%	102	9.8%	103	27.1%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
ZC3H11A	9877	genome.wustl.edu	37	1	203819659	203819659	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014827.4	+1	validated	p.N652	0.994	198	0%	231	16%	233	16.3%	-	-	-	NULL
SOX13	9580	genome.wustl.edu	37	1	204086747	204086747	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005686.2	+1	reviewed	p.I229	1.000	48	0%	46	15.2%	47	19.1%	-	-	-	NULL
ETNK2	55224	genome.wustl.edu	37	1	204115773	204115773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018208.2	-1	reviewed	p.P213H	1.000	88	1.1%	60	16.7%	3	0%	benign(0.133)	tolerated(0.14)	neutral(0.261)	HMMPfam_Choline_kinase,superfamily_Kinase_like
REN	5972	genome.wustl.edu	37	1	204128671	204128671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000537.3	-1	reviewed	p.A182V	0.000	114	0%	102	18.6%	4	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Asp,superfamily_Acid proteases
PLEKHA6	22874	genome.wustl.edu	37	1	204226989	204226989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014935.2	-1	validated	p.R339M	1.000	72	0%	55	21.8%	0	-	benign(0.336)	deleterious(0.03)	deleterious(0.470)	NULL
MDM4	4194	genome.wustl.edu	37	1	204506581	204506581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002393.3	+1	validated	p.A123T	1.000	207	0%	199	20.6%	9	11.1%	possibly_damaging(0.456)	tolerated(0.37)	neutral(0.168)	NULL
MDM4	4194	genome.wustl.edu	37	1	204511937	204511937	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002393.3	+1	validated	p.A179	0.136	338	0%	321	12.8%	18	27.7%	-	-	-	NULL
LRRN2	10446	genome.wustl.edu	37	1	204588281	204588281	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006338.2	-1	reviewed	p.D280	1.000	148	0%	113	11.5%	6	16.6%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRN2	10446	genome.wustl.edu	37	1	204588398	204588398	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006338.2	-1	reviewed	p.S241	1.000	114	0%	91	14.3%	10	30%	-	-	-	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
NFASC	23114	genome.wustl.edu	37	1	204926891	204926891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.A209T	1.000	246	0%	196	12.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
NFASC	23114	genome.wustl.edu	37	1	204945907	204945907	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367173	+1	known	p.P575H	0.998	262	0%	245	16.7%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NFASC	23114	genome.wustl.edu	37	1	204953229	204953229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.V845I	1.000	184	0%	166	19.9%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN2	6900	genome.wustl.edu	37	1	205031628	205031628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005076.2	+1	reviewed	p.G391S	0.998	69	0%	47	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TMCC2	9911	genome.wustl.edu	37	1	205238992	205238992	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014858.3	+1	validated	p.C554	1.000	76	0%	51	19.6%	0	-	-	-	-	HMMPfam_Tmemb_cc2
NUAK2	81788	genome.wustl.edu	37	1	205272972	205272972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030952.1	-1	provisional	p.R498H	0.998	55	0%	35	22.9%	11	27.2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
NUAK2	81788	genome.wustl.edu	37	1	205273272	205273272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030952.1	-1	provisional	p.R398H	0.427	82	0%	66	13.6%	14	21.4%	benign(0.002)	tolerated(0.07)	neutral(0.319)	NULL
KLHDC8A	55220	genome.wustl.edu	37	1	205312457	205312457	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018203.1	-1	provisional	p.L92	1.000	123	0%	82	14.6%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ENSG00000226235	0	genome.wustl.edu	37	1	205351154	205351154	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447832	+1	known	NULL	0.013	32	0%	33	12.1%	0	-	-	-	-	-
MFSD4	148808	genome.wustl.edu	37	1	205554119	205554119	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181644.4	+1	validated	p.T325	1.000	62	0%	60	10%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
MFSD4	148808	genome.wustl.edu	37	1	205561345	205561345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181644.4	+1	validated	p.S409	0.000	94	0%	89	25.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC41A1	254428	genome.wustl.edu	37	1	205779469	205779469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173854.4	-1	validated	p.A34V	0.997	153	0%	101	20.8%	8	0%	benign(0)	tolerated(1)	-	NULL
PM20D1	148811	genome.wustl.edu	37	1	205817046	205817046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152491.4	-1	validated	p.A75T	1.000	179	0%	165	14.5%	0	-	benign(0.229)	deleterious(0.04)	neutral(0.372)	superfamily_Zn-dependent exopeptidases
CTSE	1510	genome.wustl.edu	37	1	206328759	206328759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001910.2	+1	reviewed	p.C276R	1.000	113	0%	107	10.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asp,superfamily_Pept_Aspartic
SRGAP2	23380	genome.wustl.edu	37	1	206611445	206611445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414359	+1	known	p.V512I	1.000	108	0%	105	19%	19	10.5%	benign(0.135)	tolerated(0.48)	neutral(0.022)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SRGAP2	23380	genome.wustl.edu	37	1	206634680	206634680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015326.2	+1	validated	p.L959M	0.001	247	0%	245	16.7%	25	32%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
IKBKE	9641	genome.wustl.edu	37	1	206650092	206650092	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014002.2	+1	validated	p.L204	1.000	61	0%	61	16.4%	9	11.1%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
IKBKE	9641	genome.wustl.edu	37	1	206665014	206665014	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014002.2	+1	validated	p.L589	1.000	82	0%	51	19.6%	5	0%	-	-	-	NULL
LOC100131192	100131192	genome.wustl.edu	37	1	206711658	206711658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342168.1	-1	model	p.L22M	0.001	234	0%	215	16.7%	1	0%	-	-	-	NULL
LGTN	100529141	genome.wustl.edu	37	1	206772395	206772395	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006893.2	-1	reviewed	p.Y418	0.760	160	0%	189	20.6%	163	22.6%	-	-	-	superfamily_SWIB/MDM2 domain
MAPKAPK2	9261	genome.wustl.edu	37	1	206902151	206902151	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032960.2	+1	reviewed	p.N126Y	1.000	64	0%	47	10.6%	70	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IL10	3586	genome.wustl.edu	37	1	206944257	206944257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000572.2	-1	reviewed	p.R125C	0.991	191	0%	202	19.3%	0	-	benign(0.298)	deleterious(0)	deleterious(0.536)	superfamily_4-helical cytokines,HMMPfam_IL10,HMMSmart_SM00188
IL10	3586	genome.wustl.edu	37	1	206944391	206944391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000572.2	-1	reviewed	p.C80Y	1.000	204	0%	184	20.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_4-helical cytokines,PatternScan_INTERLEUKIN_10,HMMPfam_IL10,HMMSmart_SM00188
IL20	50604	genome.wustl.edu	37	1	207039238	207039238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018724.3	+1	reviewed	p.A14V	0.004	278	0%	310	18.7%	0	-	unknown(0)	tolerated(1)	-	HMMPfam_IL10
IL20	50604	genome.wustl.edu	37	1	207039324	207039324	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018724.3	+1	reviewed	p.R43*	0.037	305	0.3%	340	11.8%	0	-	-	-	-	superfamily_4_helix_cytokine,HMMPfam_IL10,HMMSmart_IL10
FAIM3	9214	genome.wustl.edu	37	1	207085108	207085108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142472.1	-1	validated	p.S226N	0.047	151	0%	125	14.4%	6	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
PIGR	5284	genome.wustl.edu	37	1	207109102	207109102	+	Silent	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002644.3	-1	reviewed	p.V369	0.000	85	0%	49	20.4%	2470	10.7%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PFKFB2	5208	genome.wustl.edu	37	1	207235994	207235994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006212.2	+1	reviewed	p.A81S	1.000	402	0%	398	15.3%	13	23%	benign(0.007)	tolerated(0.31)	neutral(0.027)	HMMPfam_6PF2K,superfamily_P-loop containing nucleoside triphosphate hydrolases
C4BPA	722	genome.wustl.edu	37	1	207317903	207317903	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000715.3	+1	reviewed	p.G545	0.884	264	0%	273	16.8%	14	7.1%	-	-	-	NULL
CD55	1604	genome.wustl.edu	37	1	207504538	207504538	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114752.1	+1	reviewed	p.T250	0.001	320	0%	390	11.5%	84	16.6%	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207640107	207640107	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.G99*	0.605	317	0%	403	20.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR2	1380	genome.wustl.edu	37	1	207643405	207643405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.A395T	0.002	156	0%	226	19.9%	1	0%	probably_damaging(0.975)	tolerated(0.12)	deleterious(0.677)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
CR1	1378	genome.wustl.edu	37	1	207753608	207753608	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000651.4	+1	reviewed	p.L1654M	0.233	475	0.4%	566	14.3%	0	-	probably_damaging(0.994)	tolerated(0.2)	deleterious(0.501)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207787835	207787835	+	Splice_Site	SNP	G	G	A	rs55750843		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000651.4	+1	reviewed	e40+1	1.000	166	0%	192	17.2%	0	-	-	-	-	-
CR1L	1379	genome.wustl.edu	37	1	207867865	207867865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175710.1	+1	validated	p.D211N	0.016	409	0%	493	16%	0	-	probably_damaging(0.972)	tolerated(0.3)	neutral(0.443)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1L	1379	genome.wustl.edu	37	1	207890962	207890962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175710.1	+1	validated	p.R523H	0.783	701	0.3%	598	17.2%	0	-	benign(0.055)	tolerated(0.53)	neutral(0.011)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CD46	4179	genome.wustl.edu	37	1	207930538	207930538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172359.1	+1	reviewed	p.A93T	0.000	448	0%	414	15.5%	214	18.2%	benign(0.01)	tolerated(0.32)	neutral(0.025)	HMMSmart_CCP,superfamily_Complement_control_module
PLXNA2	5362	genome.wustl.edu	37	1	208205081	208205081	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.D1693	0.007	36	0%	34	14.7%	18	0%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA2	5362	genome.wustl.edu	37	1	208213029	208213029	+	Silent	SNP	G	G	A	rs188406573	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.G1479	0.626	72	0%	59	11.9%	5	0%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA2	5362	genome.wustl.edu	37	1	208255840	208255840	+	Missense_Mutation	SNP	C	C	T	rs185488994	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.G771D	1.000	120	0%	103	21.4%	6	33.3%	benign(0.081)	deleterious(0.05)	neutral(0.351)	NULL
PLXNA2	5362	genome.wustl.edu	37	1	208315746	208315746	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.D478	0.976	189	0%	151	13.2%	3	0%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA2	5362	genome.wustl.edu	37	1	208391196	208391196	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025179.3	-1	reviewed	p.V24	0.952	87	0%	74	18.9%	4	0%	-	-	-	NULL
LOC642587	642587	genome.wustl.edu	37	1	209605548	209605548	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104548.1	+1	validated	e3-1	1.000	98	0%	104	17.3%	0	-	-	-	-	-
CAMK1G	57172	genome.wustl.edu	37	1	209785210	209785210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020439.2	+1	reviewed	p.R330H	0.302	356	0%	271	15.5%	0	-	benign(0.011)	deleterious(0.01)	neutral(0.406)	superfamily_Protein kinase-like (PK-like)
LAMB3	3914	genome.wustl.edu	37	1	209791834	209791834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.R958C	0.395	43	0%	31	12.9%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LAMB3	3914	genome.wustl.edu	37	1	209803114	209803114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.R367H	0.596	135	0%	116	25.9%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
LAMB3	3914	genome.wustl.edu	37	1	209803221	209803221	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.V331	1.000	214	0%	175	14.9%	1	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
LAMB3	3914	genome.wustl.edu	37	1	209807841	209807841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.R172Q	0.904	160	0%	159	11.3%	2	0%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
TRAF3IP3	80342	genome.wustl.edu	37	1	209949017	209949017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025228.2	+1	reviewed	p.R310M	0.700	292	0.3%	238	20.2%	10	0%	possibly_damaging(0.449)	deleterious(0.02)	deleterious(0.530)	NULL
TRAF3IP3	80342	genome.wustl.edu	37	1	209951481	209951481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025228.2	+1	reviewed	p.E385D	0.979	337	0%	250	14.8%	8	0%	probably_damaging(0.99)	tolerated(0.32)	neutral(0.466)	NULL
IRF6	3664	genome.wustl.edu	37	1	209964097	209964097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006147.2	-1	reviewed	p.P268L	1.000	267	0%	242	20.7%	38	28.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SMAD_FHA,HMMPfam_IRF-3
IRF6	3664	genome.wustl.edu	37	1	209969776	209969776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006147.2	-1	reviewed	p.G99V	1.000	122	0%	133	15.8%	27	29.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785
DIEXF	27042	genome.wustl.edu	37	1	210016891	210016891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014388.5	+1	validated	p.R626H	0.999	236	0%	228	13.2%	45	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DUF1253
SERTAD4	56256	genome.wustl.edu	37	1	210415271	210415271	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019605.3	+1	validated	p.P220	0.926	348	0%	290	17.9%	9	11.1%	-	-	-	NULL
SERTAD4	56256	genome.wustl.edu	37	1	210415589	210415589	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019605.3	+1	validated	p.N326	0.948	188	0%	181	13.8%	5	0%	-	-	-	NULL
KCNH1	3756	genome.wustl.edu	37	1	211093264	211093264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172362.2	-1	reviewed	p.A394S	1.000	555	0.2%	543	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RCOR3	55758	genome.wustl.edu	37	1	211451540	211451540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136223.1	+1	validated	p.R200C	1.000	471	0%	452	13.5%	34	14.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
INTS7	25896	genome.wustl.edu	37	1	212161248	212161248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015434.2	-1	provisional	p.H326R	1.000	139	0.7%	157	13.4%	18	27.7%	benign(0)	tolerated(0.16)	neutral(0.059)	superfamily_ARM repeat
DTL	51514	genome.wustl.edu	37	1	212273784	212273784	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016448.2	+1	validated	p.G484	0.969	354	0%	334	15.9%	45	33.3%	-	-	-	NULL
PPP2R5A	5525	genome.wustl.edu	37	1	212530531	212530531	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006243.2	+1	reviewed	p.N377	1.000	167	0%	166	13.3%	80	11.2%	-	-	-	HMMPfam_B56,superfamily_ARM repeat
TMEM206	55248	genome.wustl.edu	37	1	212583799	212583799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018252.2	-1	validated	p.T34M	0.000	1127	0.1%	1074	16.2%	14	28.5%	benign(0.038)	tolerated(0.14)	neutral(0.252)	NULL
NENF	29937	genome.wustl.edu	37	1	212619233	212619233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013349.4	+1	reviewed	p.A135V	1.000	404	0%	383	18%	276	18.1%	possibly_damaging(0.701)	tolerated(0.2)	neutral(0.301)	HMMPfam_Cyt-b5,superfamily_Cyt_B5
FLVCR1	28982	genome.wustl.edu	37	1	213046158	213046158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014053.2	+1	validated	p.Y341C	1.000	183	0%	243	17.7%	16	18.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ANGEL2	90806	genome.wustl.edu	37	1	213168447	213168447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144567.3	-1	validated	p.L524H	1.000	172	0%	147	17.7%	40	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SMYD2	56950	genome.wustl.edu	37	1	214492285	214492285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020197.2	+1	validated	p.G165R	0.907	223	0%	189	21.7%	132	19.6%	benign(0.061)	tolerated(0.28)	neutral(0.036)	HMMSmart_SET,superfamily_SSF82199
PTPN14	5784	genome.wustl.edu	37	1	214557296	214557296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.H634	0.219	70	0%	44	18.2%	12	16.6%	-	-	-	NULL
PTPN14	5784	genome.wustl.edu	37	1	214557374	214557374	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.T608	1.000	84	0%	50	12%	4	0%	-	-	-	NULL
PTPN14	5784	genome.wustl.edu	37	1	214588020	214588020	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.R132*	0.981	518	0%	615	16.9%	4	0%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
PTPN14	5784	genome.wustl.edu	37	1	214625304	214625304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.G63D	1.000	173	0.6%	173	12.1%	2	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
PTPN14	5784	genome.wustl.edu	37	1	214637989	214637989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.R53M	1.000	111	0%	72	22.2%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
PTPN14	5784	genome.wustl.edu	37	1	214638053	214638053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.V32I	0.957	142	0.7%	117	14.5%	3	0%	possibly_damaging(0.865)	tolerated(0.32)	neutral(0.359)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
PTPN14	5784	genome.wustl.edu	37	1	214638070	214638070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.R26H	1.000	157	0%	135	14.1%	4	0%	probably_damaging(0.999)	tolerated(0.4)	deleterious(0.506)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
CENPF	1063	genome.wustl.edu	37	1	214794229	214794229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.S269G	0.985	409	0%	396	15.9%	3	66.6%	benign(0.001)	tolerated(0.75)	neutral(0.002)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214803896	214803896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.R405H	0.393	794	0%	854	17.1%	7	0%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
CENPF	1063	genome.wustl.edu	37	1	214815000	214815000	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.Q1107*	0.117	209	0%	228	14.5%	8	0%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214818844	214818844	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.L1977	0.019	250	0%	306	16.7%	17	29.4%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214825072	214825072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.T2668I	0.001	637	0%	711	13.5%	24	12.5%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
CENPF	1063	genome.wustl.edu	37	1	214830482	214830482	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.R2898*	0.000	897	0.1%	889	14.4%	47	2.1%	-	-	-	NULL
KCNK2	3776	genome.wustl.edu	37	1	215259762	215259762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017425.2	+1	reviewed	p.P33L	1.000	155	0%	121	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KCTD3	51133	genome.wustl.edu	37	1	215747460	215747460	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448333	+1	known	p.C33*	1.000	181	0%	139	12.9%	18	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCTD3	51133	genome.wustl.edu	37	1	215752442	215752442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.P166H	0.999	148	0%	190	16.3%	32	28.1%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
KCTD3	51133	genome.wustl.edu	37	1	215775447	215775447	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.R348*	0.974	212	0.5%	178	17.4%	42	2.3%	-	-	-	superfamily_WD40 repeat-like
KCTD3	51133	genome.wustl.edu	37	1	215777552	215777552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016121.3	+1	validated	p.T406I	1.000	314	0%	292	18.8%	65	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
USH2A	7399	genome.wustl.edu	37	1	215813951	215813951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.V4973M	0.016	110	0%	92	21.7%	0	-	possibly_damaging(0.492)	deleterious(0.04)	deleterious(0.513)	NULL
USH2A	7399	genome.wustl.edu	37	1	215824020	215824020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.V4753I	1.000	236	0%	211	15.2%	0	-	probably_damaging(0.954)	tolerated(0.13)	deleterious(0.650)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215844415	215844415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.A4678T	0.002	625	0%	668	14.5%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215848075	215848075	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.Y4393F	0.000	341	0%	400	14.5%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	215940079	215940079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.A3664D	1.000	361	0.3%	368	15.5%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216011345	216011345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.G3120D	0.000	270	0%	328	16.5%	0	-	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216256830	216256830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.V1756I	0.472	530	0.2%	721	15.3%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMSmart_SM00282,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
USH2A	7399	genome.wustl.edu	37	1	216390784	216390784	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.A1034	0.000	211	0%	254	16.9%	0	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
ESRRG	2104	genome.wustl.edu	37	1	216680330	216680330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001438.2	-1	validated	p.K443R	1.000	423	0%	411	15.6%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMPfam_Hormone_recep,superfamily_Nuclear receptor ligand-binding domain
ESRRG	2104	genome.wustl.edu	37	1	216741391	216741391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001438.2	-1	validated	p.R213S	1.000	103	0%	110	14.5%	3	0%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	superfamily_Nuclear receptor ligand-binding domain
GPATCH2	55105	genome.wustl.edu	37	1	217783721	217783721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018040.2	-1	provisional	p.R347H	1.000	352	0%	414	18.1%	11	27.2%	benign(0.015)	tolerated(0.26)	neutral(0.035)	NULL
RRP15	51018	genome.wustl.edu	37	1	218458779	218458779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016052.3	+1	reviewed	p.D41Y	0.008	106	0%	101	14.9%	36	41.6%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
TGFB2	7042	genome.wustl.edu	37	1	218578622	218578622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135599.1	+1	validated	p.R181H	1.000	929	0.2%	940	16.1%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGFb_propeptide
LYPLAL1	127018	genome.wustl.edu	37	1	219366582	219366582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138794.3	+1	validated	p.R117M	1.000	135	0%	200	18%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
LYPLAL1	127018	genome.wustl.edu	37	1	219384885	219384885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138794.3	+1	validated	p.T177A	0.739	297	0%	387	16.3%	6	33.3%	benign(0.017)	tolerated(0.49)	neutral(0.011)	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
EPRS	2058	genome.wustl.edu	37	1	220146601	220146601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004446.2	-1	reviewed	p.I1408T	1.000	400	0%	424	17.7%	532	21.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Anticodon_bd
EPRS	2058	genome.wustl.edu	37	1	220170683	220170683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004446.2	-1	reviewed	p.T728I	0.002	208	0%	210	14.3%	199	28.6%	benign(0.002)	tolerated(0.24)	neutral(0.037)	NULL
IARS2	55699	genome.wustl.edu	37	1	220279392	220279392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018060.3	+1	validated	p.N409S	0.994	299	0%	317	15.5%	191	18.8%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase
RAB3GAP2	25782	genome.wustl.edu	37	1	220324641	220324641	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.A1378	1.000	262	0%	264	17.4%	38	10.5%	-	-	-	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220368647	220368647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.A345T	1.000	760	0%	791	15.4%	17	17.6%	possibly_damaging(0.756)	tolerated(0.08)	deleterious(0.579)	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220369721	220369721	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.P277	0.897	484	0%	556	14.4%	13	30.7%	-	-	-	NULL
MARK1	4139	genome.wustl.edu	37	1	220791712	220791712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018650.3	+1	validated	p.N205D	1.000	227	0%	209	15.8%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARK1	4139	genome.wustl.edu	37	1	220826578	220826578	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018650.3	+1	validated	p.S624	0.984	213	0%	192	16.1%	27	33.3%	-	-	-	NULL
MARC2	54996	genome.wustl.edu	37	1	220953411	220953411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017898.3	+1	provisional	p.A268T	0.025	302	0%	289	15.6%	36	13.8%	benign(0.182)	tolerated(0.1)	neutral(0.303)	HMMPfam_MOSC,superfamily_PK beta-barrel domain-like
MARC1	64757	genome.wustl.edu	37	1	220969993	220969993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022746.3	+1	validated	p.G153D	0.574	104	0%	78	10.3%	89	24.7%	benign(0.17)	tolerated(0.13)	neutral(0.268)	HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like
HHIPL2	79802	genome.wustl.edu	37	1	222717215	222717215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.A213D	1.000	65	0%	87	10.3%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_Quino_gluc_DH
TAF1A	9015	genome.wustl.edu	37	1	222732051	222732051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005681.2	-1	reviewed	p.R435Q	0.336	263	0.4%	254	13%	3	0%	benign(0.057)	tolerated(0.38)	neutral(0.021)	NULL
MIA3	375056	genome.wustl.edu	37	1	222802010	222802010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.T483I	0.000	475	0.2%	458	17.9%	30	23.3%	benign(0.026)	deleterious(0.02)	neutral(0.384)	NULL
MIA3	375056	genome.wustl.edu	37	1	222802291	222802291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.L577M	0.000	251	0%	235	14%	28	17.8%	benign(0.127)	tolerated(0.11)	neutral(0.282)	NULL
MIA3	375056	genome.wustl.edu	37	1	222803003	222803003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.R814H	0.001	190	0%	218	16.1%	47	23.4%	possibly_damaging(0.738)	tolerated(0.46)	neutral(0.282)	NULL
MIA3	375056	genome.wustl.edu	37	1	222803358	222803358	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354906	+1	known	p.T515A	0.000	252	0%	257	15.6%	41	24.3%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222818994	222818994	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354906	+1	known	p.V775I	0.006	112	1.8%	122	15.6%	62	29%	-	-	-	NULL
MIA3	375056	genome.wustl.edu	37	1	222838804	222838804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.P1856H	0.997	829	0.2%	840	14.9%	169	23.6%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
BROX	148362	genome.wustl.edu	37	1	222895810	222895810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.A119T	1.000	118	0%	113	14.2%	55	29%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_BRO1
BROX	148362	genome.wustl.edu	37	1	222903411	222903411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.T294I	1.000	447	0%	506	15%	72	15.2%	benign(0.391)	tolerated(0.06)	neutral(0.448)	HMMPfam_BRO1
BROX	148362	genome.wustl.edu	37	1	222904820	222904820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.A371T	0.999	378	0%	378	16.7%	83	21.6%	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_BRO1
DISP1	84976	genome.wustl.edu	37	1	223168326	223168326	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032890.2	+1	reviewed	e6+2	1.000	521	0%	519	17.7%	0	-	-	-	-	-
DISP1	84976	genome.wustl.edu	37	1	223178519	223178519	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032890.2	+1	reviewed	p.T1260	0.016	223	0%	193	13%	16	18.7%	-	-	-	NULL
C1orf65	164127	genome.wustl.edu	37	1	223568233	223568233	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152610.2	+1	validated	p.R472	0.003	87	0%	65	24.6%	0	-	-	-	-	NULL
CAPN2	824	genome.wustl.edu	37	1	223939752	223939752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001748.4	+1	reviewed	p.R318Q	0.012	202	0%	118	17.8%	115	36.5%	benign(0.01)	tolerated(0.68)	neutral(0.003)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CAPN2	824	genome.wustl.edu	37	1	223940573	223940573	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001748.4	+1	reviewed	p.S350	0.029	114	0%	84	11.9%	98	20.4%	-	-	-	HMMSmart_SM00230,superfamily_Cysteine proteinases
TP53BP2	7159	genome.wustl.edu	37	1	223971970	223971970	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031685.2	-1	reviewed	p.A1070	0.000	233	0%	232	18.5%	35	22.8%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_ANK
TP53BP2	7159	genome.wustl.edu	37	1	223985970	223985970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031685.2	-1	reviewed	p.A632V	0.974	343	0.6%	371	14.6%	73	13.6%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
TP53BP2	7159	genome.wustl.edu	37	1	223991924	223991924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031685.2	-1	reviewed	p.A201S	1.000	459	0%	505	15.6%	23	4.3%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
DEGS1	8560	genome.wustl.edu	37	1	224377312	224377312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003676.2	+1	reviewed	p.P39H	1.000	301	0%	277	15.9%	28	35.7%	benign(0.042)	tolerated(0.65)	neutral(0.005)	HMMPfam_Lipid_DES
DEGS1	8560	genome.wustl.edu	37	1	224377686	224377686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003676.2	+1	reviewed	p.I164V	0.998	418	0%	430	16.5%	61	13.1%	benign(0)	tolerated(1)	-	HMMPfam_FA_desaturase
DEGS1	8560	genome.wustl.edu	37	1	224377819	224377819	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003676.2	+1	reviewed	p.S208Y	1.000	416	0%	394	14%	95	20%	possibly_damaging(0.76)	tolerated(0.16)	neutral(0.341)	HMMPfam_FA_desaturase
NVL	4931	genome.wustl.edu	37	1	224468866	224468866	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000469968	-1	known	p.T523I	1.000	166	0%	213	17.4%	35	14.2%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR26	80232	genome.wustl.edu	37	1	224586687	224586687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025160.6	-1	reviewed	p.C343Y	1.000	337	0%	349	17.2%	123	15.4%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	superfamily_WD40 repeat-like
CNIH3	149111	genome.wustl.edu	37	1	224804946	224804946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152495.1	+1	provisional	p.A24T	1.000	298	0%	221	16.7%	0	-	benign(0.248)	tolerated(0.38)	neutral(0.043)	HMMPfam_Cornichon
LBR	3930	genome.wustl.edu	37	1	225605798	225605798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002296.2	-1	reviewed	p.N242I	0.000	296	0%	306	25.5%	100	27%	benign(0.01)	tolerated(0.14)	neutral(0.250)	HMMPfam_ERG4_ERG24
TMEM63A	9725	genome.wustl.edu	37	1	226054322	226054322	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014698.2	-1	validated	p.G209	1.000	145	0%	89	13.5%	43	34.8%	-	-	-	NULL
LEFTY1	10637	genome.wustl.edu	37	1	226074576	226074576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020997.2	-1	reviewed	p.A318T	0.793	36	0%	35	22.9%	5	0%	possibly_damaging(0.88)	tolerated(0.11)	deleterious(0.615)	HMMSmart_TGFB,superfamily_SSF57501
PARP1	142	genome.wustl.edu	37	1	226573319	226573319	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001618.3	-1	reviewed	p.S299	0.001	180	0%	173	16.8%	212	24.5%	-	-	-	HMMPfam_PADR1
ITPKB	3707	genome.wustl.edu	37	1	226822416	226822416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.V933I	1.000	26	0%	27	25.9%	23	26%	benign(0)	tolerated(1)	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
ADCK3	56997	genome.wustl.edu	37	1	227171272	227171272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020247.4	+1	reviewed	p.S367I	1.000	40	0%	29	24.1%	44	6.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)
ADCK3	56997	genome.wustl.edu	37	1	227172580	227172580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020247.4	+1	reviewed	p.A504T	1.000	37	0%	46	21.7%	32	31.2%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_Protein kinase-like (PK-like)
CDC42BPA	8476	genome.wustl.edu	37	1	227198596	227198596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334218	-1	known	p.S1641G	0.998	67	0%	54	20.4%	0	-	benign(0.235)	tolerated(0.18)	neutral(0.080)	NULL
CDC42BPA	8476	genome.wustl.edu	37	1	227219123	227219123	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442054	-1	known	p.A511T	0.990	486	0.2%	493	16.4%	21	28.5%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CDC42BPA	8476	genome.wustl.edu	37	1	227222418	227222418	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442054	-1	known	p.R432*	0.529	275	0%	265	19.6%	28	35.7%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PRSS38	339501	genome.wustl.edu	37	1	228004928	228004928	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183062.2	+1	validated	p.I110	0.000	104	0%	78	19.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ARF1	375	genome.wustl.edu	37	1	228284888	228284888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024226.1	+1	reviewed	p.L25M	1.000	120	0.8%	99	20.2%	976	21.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
OBSCN	84033	genome.wustl.edu	37	1	228402134	228402134	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.S506	0.018	75	0%	55	20%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228412196	228412196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R897H	0.000	124	0%	100	15%	0	-	benign(0.005)	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228434478	228434478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R1336Q	0.046	192	0%	181	19.3%	1	0%	benign(0.034)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228437883	228437883	+	Silent	SNP	C	C	T	rs35326243		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.T1417	0.038	104	0%	97	18.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228456342	228456342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.T1658M	0.637	26	0%	29	20.7%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228466560	228466560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R2344C	1.000	49	0%	36	22.2%	1	0%	probably_damaging(1)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228471259	228471259	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.G2931	0.684	83	0%	56	10.7%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228471333	228471333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.R2956Q	0.002	58	0%	59	28.8%	5	40%	possibly_damaging(0.626)	tolerated(0.32)	neutral(0.242)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228482668	228482668	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.G3861	0.001	367	0.3%	267	13.9%	3	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OBSCN	84033	genome.wustl.edu	37	1	228494959	228494959	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	e46-1	1.000	101	0%	84	23.8%	0	-	-	-	-	-
TRIM11	81559	genome.wustl.edu	37	1	228582498	228582498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145214.2	-1	reviewed	p.R439W	0.742	67	0%	55	25.5%	103	28.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SPRY,HMMSmart_SM00449
RAB4A	5867	genome.wustl.edu	37	1	229438717	229438717	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004578.2	+1	provisional	p.G217V	1.000	226	0%	201	17.4%	140	20.7%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00176
ACTA1	58	genome.wustl.edu	37	1	229567470	229567470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100.3	-1	reviewed	p.K330E	1.000	49	0%	29	20.7%	1	100%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
NUP133	55746	genome.wustl.edu	37	1	229600611	229600611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	p.P771T	0.138	248	0.4%	244	15.6%	47	21.2%	possibly_damaging(0.514)	tolerated(0.25)	neutral(0.210)	HMMPfam_Nup133
NUP133	55746	genome.wustl.edu	37	1	229601165	229601165	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	e17+2	0.999	307	0%	325	15.4%	0	-	-	-	-	-
NUP133	55746	genome.wustl.edu	37	1	229623327	229623327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	p.P410S	1.000	383	0%	392	14.3%	41	34.1%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_Nup133_N
ABCB10	23456	genome.wustl.edu	37	1	229653992	229653992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012089.2	-1	reviewed	p.E717D	0.960	203	0%	212	16%	33	18.1%	benign(0.145)	tolerated(0.2)	neutral(0.061)	superfamily_SSF52540
TAF5L	27097	genome.wustl.edu	37	1	229738365	229738365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014409.3	-1	reviewed	p.N183	1.000	305	0%	297	19.5%	40	10%	-	-	-	HMMPfam_TFIID_90kDa
URB2	9816	genome.wustl.edu	37	1	229771711	229771711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.A451T	0.018	154	0%	148	18.9%	16	25%	benign(0.058)	tolerated(0.31)	neutral(0.030)	NULL
URB2	9816	genome.wustl.edu	37	1	229772402	229772402	+	Missense_Mutation	SNP	A	A	C	rs78745401	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.K681T	0.994	292	0%	285	19.3%	13	23%	possibly_damaging(0.454)	deleterious(0.01)	deleterious(0.554)	NULL
URB2	9816	genome.wustl.edu	37	1	229773133	229773133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014777.2	+1	provisional	p.A925T	0.629	269	0.4%	286	15.7%	20	20%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	NULL
GALNT2	2590	genome.wustl.edu	37	1	230372099	230372099	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004481.3	+1	reviewed	p.S158	0.988	100	0%	102	26.5%	36	22.2%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNT2	2590	genome.wustl.edu	37	1	230381839	230381839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004481.3	+1	reviewed	p.D254N	1.000	144	0%	129	17.1%	48	14.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
AGT	183	genome.wustl.edu	37	1	230846067	230846067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.A177V	0.880	88	0%	68	13.2%	1	0%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CAPN9	10753	genome.wustl.edu	37	1	230916339	230916339	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006615.2	+1	reviewed	p.S456T	1.000	369	0%	374	14.4%	0	-	probably_damaging(0.967)	tolerated(0.34)	neutral(0.432)	HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III)
TTC13	79573	genome.wustl.edu	37	1	231047268	231047268	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024525.4	-1	validated	p.L753V	1.000	280	0%	279	21.5%	13	30.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TTC13	79573	genome.wustl.edu	37	1	231047291	231047291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024525.4	-1	validated	p.A745D	1.000	241	0%	249	15.3%	16	37.5%	benign(0.174)	tolerated(0.06)	neutral(0.339)	NULL
TTC13	79573	genome.wustl.edu	37	1	231048425	231048425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024525.4	-1	validated	p.L725I	1.000	957	0%	915	16.2%	18	22.2%	benign(0.03)	tolerated(0.45)	neutral(0.013)	NULL
TRIM67	440730	genome.wustl.edu	37	1	231344803	231344803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004342.3	+1	validated	p.A644S	1.000	224	0%	203	13.3%	0	-	benign(0.003)	deleterious(0.05)	neutral(0.345)	superfamily_Concanavalin A-like lectins/glucanases
GNPAT	8443	genome.wustl.edu	37	1	231396350	231396350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014236.3	+1	reviewed	p.R120Q	1.000	793	0.1%	825	14.8%	120	19.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GNPAT	8443	genome.wustl.edu	37	1	231402043	231402043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014236.3	+1	reviewed	p.K315N	0.318	144	0%	154	17.5%	120	22.5%	benign(0.269)	tolerated(0.17)	neutral(0.087)	superfamily_SSF69593
TSNAX	7257	genome.wustl.edu	37	1	231678213	231678213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413309	+1	known	p.Y82H	0.097	234	0%	262	13%	1	0%	unknown(0)	tolerated(0.56)	-	HMMPfam_Translin,superfamily_Translin
DISC1	27185	genome.wustl.edu	37	1	231829600	231829600	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018662.2	+1	reviewed	p.A32	0.000	108	0.9%	106	17%	0	-	-	-	-	NULL
DISC1	27185	genome.wustl.edu	37	1	232002269	232002269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012959.1	+1	reviewed	p.G661E	0.000	109	0%	112	16.1%	0	-	probably_damaging(0.997)	tolerated(1)	neutral(0.466)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232596889	232596889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.E947K	1.000	407	0%	362	19.3%	72	18%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	superfamily_PDZ domain-like
SIPA1L2	57568	genome.wustl.edu	37	1	232600652	232600652	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020808.3	-1	validated	p.E918D	1.000	196	0%	173	11.6%	61	19.6%	benign(0.009)	tolerated(0.39)	neutral(0.017)	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232940870	232940870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.T34I	0.000	397	0%	274	14.6%	0	-	unknown(0)	-	-	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232941971	232941971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.V401A	0.000	566	0.2%	447	15%	0	-	benign(0.258)	tolerated(0.32)	neutral(0.051)	NULL
KIAA1383	54627	genome.wustl.edu	37	1	232942913	232942913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019090.2	+1	validated	p.S715T	0.000	102	0%	76	18.4%	1	0%	benign(0.004)	tolerated(0.2)	neutral(0.049)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233160963	233160963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.L1512M	0.618	233	0.4%	197	10.7%	7	14.2%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233225835	233225835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.P1350S	1.000	212	0.5%	200	14.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233231597	233231597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.L1284I	1.000	168	0%	154	16.2%	8	62.5%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	PatternScan_DNAJ_1
TARBP1	6894	genome.wustl.edu	37	1	234582575	234582575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005646.3	-1	reviewed	p.R703M	0.001	304	0%	329	17%	16	12.5%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
IRF2BP2	359948	genome.wustl.edu	37	1	234743334	234743334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182972.2	-1	reviewed	p.S438I	1.000	85	0%	59	18.6%	401	19.9%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345770	235345770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.R822C	1.000	446	0%	489	19.2%	26	23%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
TBCE	6905	genome.wustl.edu	37	1	235543435	235543435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079515.1	+1	reviewed	p.R24H	0.990	113	0%	99	16.2%	38	26.3%	possibly_damaging(0.58)	tolerated(0.07)	deleterious(0.518)	HMMPfam_CAP_GLY
TBCE	6905	genome.wustl.edu	37	1	235564889	235564889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079515.1	+1	reviewed	p.Y58H	1.000	249	0%	279	16.5%	20	15%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_SSF52047
TBCE	6905	genome.wustl.edu	37	1	235600762	235600762	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079515.1	+1	reviewed	p.G363	0.293	144	0%	142	17.6%	54	20.3%	-	-	-	superfamily_SSF52047
B3GALNT2	148789	genome.wustl.edu	37	1	235643393	235643393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152490.2	-1	validated	p.V210M	1.000	128	0%	157	17.2%	50	34%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LYST	1130	genome.wustl.edu	37	1	235878639	235878639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.R3216C	1.000	117	0%	132	15.9%	5	0%	possibly_damaging(0.545)	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235884030	235884030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.P3164H	1.000	297	0%	366	16.9%	5	0%	probably_damaging(1)	-	-	HMMPfam_Beach,superfamily_BEACH domain
LYST	1130	genome.wustl.edu	37	1	235894359	235894359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.L2974I	1.000	342	0%	381	15.5%	0	-	probably_damaging(0.999)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235894438	235894438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.W2947*	1.000	285	0%	324	16.7%	2	0%	-	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235916465	235916465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.A2447T	0.884	300	0%	372	14%	4	75%	benign(0.019)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235940529	235940529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.Q1765R	0.976	266	0%	383	14.9%	0	-	possibly_damaging(0.904)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235952058	235952058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.S1544F	1.000	147	0%	166	16.9%	0	-	probably_damaging(1)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235955161	235955161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.L1461M	1.000	274	0%	335	18.8%	2	100%	possibly_damaging(0.9)	-	-	NULL
LYST	1130	genome.wustl.edu	37	1	235969359	235969359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.R1026I	0.011	443	0.2%	514	17.9%	0	-	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	NULL
LYST	1130	genome.wustl.edu	37	1	235972036	235972036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.K694N	1.000	164	0%	206	11.7%	1	100%	benign(0.069)	tolerated(0.1)	neutral(0.291)	NULL
LYST	1130	genome.wustl.edu	37	1	235972332	235972332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.L596F	1.000	372	0%	415	16.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NID1	4811	genome.wustl.edu	37	1	236144973	236144973	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.R1055	1.000	257	0%	280	15.4%	12	0%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NID1	4811	genome.wustl.edu	37	1	236212038	236212038	+	Silent	SNP	G	G	T	rs6665008	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.S159	0.211	86	0%	71	31%	3	0%	-	-	-	HMMSmart_SM00539
GPR137B	7107	genome.wustl.edu	37	1	236306311	236306311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003272.3	+1	validated	p.T130M	1.000	116	0%	78	17.9%	8	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GPR137B	7107	genome.wustl.edu	37	1	236343323	236343323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003272.3	+1	validated	p.D278Y	1.000	248	0%	216	12.5%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LGALS8	3964	genome.wustl.edu	37	1	236711328	236711328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006499.3	+1	reviewed	p.D316G	0.961	326	0%	298	14.1%	17	5.8%	possibly_damaging(0.94)	deleterious(0.03)	deleterious(0.750)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
LGALS8	3964	genome.wustl.edu	37	1	236711387	236711387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006499.3	+1	reviewed	p.F336I	0.496	265	0%	268	19.8%	12	33.3%	benign(0.283)	tolerated(0.65)	neutral(0.090)	HMMPfam_Gal-bind_lectin,HMMSmart_GLECT,superfamily_ConA_like_lec_gl
HEATR1	55127	genome.wustl.edu	37	1	236716994	236716994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.T2042A	0.982	297	0%	302	16.6%	87	20.6%	benign(0.001)	tolerated(0.73)	neutral(0.002)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236739572	236739572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.P1011T	1.000	434	0%	434	15%	37	18.9%	possibly_damaging(0.482)	deleterious(0.02)	deleterious(0.543)	superfamily_ARM-type_fold
HEATR1	55127	genome.wustl.edu	37	1	236748458	236748458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.T703M	0.991	262	0%	296	16.6%	17	11.7%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
ACTN2	88	genome.wustl.edu	37	1	236889312	236889312	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.F176	1.000	210	0%	196	20.4%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ACTN2	88	genome.wustl.edu	37	1	236907957	236907957	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.Y429	0.979	56	0%	47	19.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ACTN2	88	genome.wustl.edu	37	1	236914809	236914809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.P566S	1.000	118	0%	112	19.6%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ACTN2	88	genome.wustl.edu	37	1	236914925	236914925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.M604I	1.000	126	0%	124	19.4%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ACTN2	88	genome.wustl.edu	37	1	236920785	236920785	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	e18-1	1.000	202	0%	195	18.5%	0	-	-	-	-	-
ACTN2	88	genome.wustl.edu	37	1	236920825	236920825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.A732T	1.000	189	0%	199	10.1%	0	-	benign(0.332)	tolerated(0.56)	neutral(0.111)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MTR	4548	genome.wustl.edu	37	1	236987492	236987492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.A280S	1.000	286	0%	365	14%	10	40%	unknown(0)	tolerated(0.12)	-	HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase
MTR	4548	genome.wustl.edu	37	1	237052542	237052542	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.D971	1.000	212	0%	165	14.5%	13	23%	-	-	-	superfamily_Methionine synthase activation domain-like
RYR2	6262	genome.wustl.edu	37	1	237604720	237604720	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.G369	1.000	415	0%	493	17.6%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
RYR2	6262	genome.wustl.edu	37	1	237608721	237608721	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.G397	0.120	465	0.2%	571	18%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)
RYR2	6262	genome.wustl.edu	37	1	237659930	237659930	+	Missense_Mutation	SNP	G	G	A	rs190787113	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R694Q	0.986	180	0.6%	169	17.8%	1	0%	probably_damaging(0.994)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237666794	237666794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.D868N	1.000	251	0%	207	17.9%	2	0%	possibly_damaging(0.923)	-	-	HMMPfam_RyR
RYR2	6262	genome.wustl.edu	37	1	237711849	237711849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R1009W	1.000	104	0%	97	12.4%	0	-	probably_damaging(0.994)	-	-	HMMPfam_RyR
RYR2	6262	genome.wustl.edu	37	1	237729921	237729921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A1090V	0.478	146	0%	156	16%	0	-	benign(0)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237754197	237754197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.V1355	0.000	303	0%	321	19%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237777601	237777601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.Y1725H	1.000	253	0%	235	17%	0	-	benign(0.095)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237778057	237778057	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.G1877*	1.000	224	0%	211	11.8%	1	0%	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237798227	237798227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A2243T	1.000	51	0%	54	16.7%	0	-	probably_damaging(0.997)	-	-	HMMPfam_RYDR_ITPR
RYR2	6262	genome.wustl.edu	37	1	237817619	237817619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.P2624S	0.977	170	0%	178	11.8%	0	-	benign(0.144)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237863700	237863700	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A3100	0.203	79	0%	92	26.1%	1	0%	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237870368	237870368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.V3234I	1.000	266	0%	266	17.7%	0	-	benign(0)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237872827	237872827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.R3397H	0.981	60	0%	74	20.3%	1	0%	probably_damaging(0.997)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237944946	237944946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.G3988C	1.000	49	0%	47	19.1%	5	0%	probably_damaging(1)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237954755	237954755	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.N4501	1.000	28	0%	27	37%	1	100%	-	-	-	HMMPfam_RR_TM4-6
ZP4	57829	genome.wustl.edu	37	1	238053192	238053192	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021186.2	-1	reviewed	p.L125	0.076	718	0.3%	613	15.7%	0	-	-	-	-	NULL
ZP4	57829	genome.wustl.edu	37	1	238053194	238053194	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021186.2	-1	reviewed	p.L125	0.041	704	0.1%	590	16.8%	0	-	-	-	-	NULL
CHRM3	1131	genome.wustl.edu	37	1	240072133	240072133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000740.2	+1	reviewed	p.A461V	1.000	138	0%	110	20%	2	0%	possibly_damaging(0.659)	tolerated(0.2)	neutral(0.282)	HMMPfam_7tm_1,superfamily_SSF81321
FMN2	56776	genome.wustl.edu	37	1	240494023	240494023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.P1520T	1.000	242	0%	297	13.8%	2	0%	benign(0.096)	deleterious(0)	neutral(0.452)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
RGS7	6000	genome.wustl.edu	37	1	240969578	240969578	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002924.4	-1	validated	p.V377	0.862	265	0%	274	15.7%	0	-	-	-	-	HMMPfam_RGS,HMMSmart_RGS,superfamily_Regulat_G_prot_signal_superfam
FH	2271	genome.wustl.edu	37	1	241665783	241665783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000143.2	-1	reviewed	p.S399I	1.000	408	0%	514	17.3%	263	19%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_L-aspartase-like
OPN3	23596	genome.wustl.edu	37	1	241761075	241761075	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014322.2	-1	reviewed	p.P306	0.996	309	0%	364	15.4%	14	7.1%	-	-	-	HMMPfam_7tm_1,PatternScan_OPSIN,superfamily_Family A G protein-coupled receptor-like
CHML	1122	genome.wustl.edu	37	1	241798495	241798495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001821.3	-1	reviewed	p.S192P	0.046	358	0%	325	16.3%	31	16.1%	benign(0.006)	tolerated(0.17)	neutral(0.059)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
WDR64	128025	genome.wustl.edu	37	1	241946670	241946670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.D441N	0.991	129	0%	102	10.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
EXO1	9156	genome.wustl.edu	37	1	242016664	242016664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.R96*	0.997	133	0%	102	16.7%	19	0%	-	-	-	HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like
EXO1	9156	genome.wustl.edu	37	1	242021857	242021857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.A198D	0.992	464	0%	385	16.4%	9	11.1%	benign(0.09)	tolerated(0.24)	neutral(0.044)	HMMPfam_XPG_I,HMMSmart_SM00484,superfamily_PIN domain-like
EXO1	9156	genome.wustl.edu	37	1	242030174	242030174	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.Q362*	0.405	259	0%	293	20.1%	16	6.2%	-	-	-	NULL
EXO1	9156	genome.wustl.edu	37	1	242030318	242030318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.L410I	1.000	171	0%	192	21.9%	17	23.5%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
EXO1	9156	genome.wustl.edu	37	1	242042466	242042466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006027.4	+1	reviewed	p.P644S	0.001	215	0%	222	16.2%	24	25%	possibly_damaging(0.527)	tolerated(0.06)	deleterious(0.500)	NULL
PLD5	200150	genome.wustl.edu	37	1	242287844	242287844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152666.1	-1	provisional	p.L195F	1.000	365	0%	422	19.9%	3	0%	probably_damaging(0.978)	tolerated(0.31)	neutral(0.448)	HMMPfam_PLD_envelope
PLD5	200150	genome.wustl.edu	37	1	242451783	242451783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152666.1	-1	provisional	p.A34T	1.000	197	0%	201	16.4%	4	25%	possibly_damaging(0.497)	tolerated(0.38)	neutral(0.183)	superfamily_SSF56024
CEP170	9859	genome.wustl.edu	37	1	243303284	243303284	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336415	-1	known	p.P1369L	0.830	118	0.8%	112	20.5%	14	21.4%	-	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243319624	243319624	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336415	-1	known	p.A1234V	0.982	43	0%	35	14.3%	13	30.7%	-	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243328102	243328102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014812.2	-1	reviewed	p.R1054W	0.990	333	0%	284	8.5%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243471320	243471320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.C257Y	0.998	324	0%	333	15.9%	20	20%	benign(0.006)	tolerated(0.42)	neutral(0.014)	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243471336	243471336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.E262D	0.282	352	0.3%	340	17.6%	14	28.5%	benign(0.311)	tolerated(0.19)	neutral(0.147)	NULL
C1orf100	200159	genome.wustl.edu	37	1	244528037	244528037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012970.1	+1	predicted	p.R12H	0.216	273	0%	240	11.3%	0	-	benign(0.008)	tolerated(0.23)	neutral(0.042)	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245019774	245019774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.V633I	0.996	310	0%	335	17.9%	522	22.4%	possibly_damaging(0.463)	tolerated(0.24)	neutral(0.190)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245770974	245770974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.V527M	1.000	23	0%	20	20%	8	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF26B	55083	genome.wustl.edu	37	1	245775247	245775247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.Q689H	1.000	66	0%	45	13.3%	9	44.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNST	163882	genome.wustl.edu	37	1	246810654	246810654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	p.P384L	0.758	427	0%	296	17.2%	16	6.2%	benign(0.032)	tolerated(0.2)	neutral(0.051)	NULL
CNST	163882	genome.wustl.edu	37	1	246823594	246823594	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	p.R644*	1.000	283	0%	275	16%	23	17.3%	-	-	-	NULL
SCCPDH	51097	genome.wustl.edu	37	1	246899307	246899307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016002.2	+1	validated	p.A112S	1.000	124	0%	138	15.9%	119	13.4%	benign(0.42)	tolerated(0.1)	neutral(0.422)	HMMPfam_Saccharop_dh,superfamily_NAD(P)-bd
AHCTF1	25909	genome.wustl.edu	37	1	247004113	247004113	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.L2266	1.000	147	0%	134	15.7%	49	24.4%	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247014134	247014134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.T1725S	0.000	274	0%	285	20%	47	25.5%	benign(0.026)	tolerated(0.34)	neutral(0.024)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247014690	247014690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.L1540I	0.355	145	0%	147	13.6%	27	11.1%	probably_damaging(0.955)	tolerated(0.11)	deleterious(0.670)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247021102	247021102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.A1383T	0.002	144	0%	135	20%	34	26.4%	benign(0.006)	tolerated(0.44)	neutral(0.013)	NULL
ZNF669	79862	genome.wustl.edu	37	1	247265390	247265390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024804.2	-1	validated	p.A96D	1.000	121	0%	84	19%	10	30%	possibly_damaging(0.929)	tolerated(0.22)	neutral(0.418)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF124	7678	genome.wustl.edu	37	1	247322347	247322347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003431.2	-1	provisional	p.S60I	0.647	119	0.8%	125	16.8%	13	30.7%	possibly_damaging(0.836)	deleterious(0.03)	deleterious(0.684)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
NLRP3	114548	genome.wustl.edu	37	1	247586599	247586599	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.W117*	0.988	370	0%	321	13.1%	0	-	-	-	-	NULL
NLRP3	114548	genome.wustl.edu	37	1	247587744	247587744	+	Silent	SNP	C	C	T	rs180177451		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079821.2	+1	reviewed	p.S333	1.000	205	0%	174	21.3%	1	100%	-	-	-	HMMPfam_NACHT
OR2G2	81470	genome.wustl.edu	37	1	247751736	247751736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001915.1	+1	provisional	p.Q25H	0.156	579	0%	781	17.5%	0	-	benign(0.005)	tolerated(0.52)	neutral(0.009)	superfamily_SSF81321
OR2G3	81469	genome.wustl.edu	37	1	247768898	247768898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001914.1	+1	provisional	p.G4D	0.000	384	0%	387	17.1%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_Family A G protein-coupled receptor-like
OR13G1	441933	genome.wustl.edu	37	1	247835789	247835789	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005487.1	-1	provisional	p.S185	0.991	268	0.4%	307	14.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6F1	343169	genome.wustl.edu	37	1	247875677	247875677	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005286.1	-1	provisional	p.C127*	0.949	159	0%	137	19.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR14K1	343170	genome.wustl.edu	37	1	247902071	247902071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283225	+1	known	p.R52H	0.000	312	0%	373	20.9%	0	-	benign(0.001)	tolerated(0.83)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
OR14A16	284532	genome.wustl.edu	37	1	247978715	247978715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001966.1	-1	provisional	p.A106V	0.000	417	0%	505	16%	0	-	benign(0.044)	tolerated(0.09)	neutral(0.299)	HMMPfam_7tm_1,superfamily_SSF81321
OR11L1	391189	genome.wustl.edu	37	1	248004473	248004473	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001959.1	-1	provisional	p.G242	0.932	223	0%	212	16%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM58	25893	genome.wustl.edu	37	1	248023987	248023987	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015431.3	+1	validated	p.N163	0.001	93	0%	83	12%	0	-	-	-	-	NULL
TRIM58	25893	genome.wustl.edu	37	1	248039261	248039261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015431.3	+1	validated	p.R311C	0.028	307	0%	242	19.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PRY
TRIM58	25893	genome.wustl.edu	37	1	248039312	248039312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015431.3	+1	validated	p.R328*	0.997	398	0.5%	335	17.3%	0	-	-	-	-	HMMSmart_PRY
OR2W3	343171	genome.wustl.edu	37	1	248059128	248059128	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001957.2	+1	provisional	p.Q80	0.948	429	0%	401	17.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T8	343172	genome.wustl.edu	37	1	248084835	248084835	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005522.1	+1	validated	p.I172	0.001	180	0%	146	13%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2T8	343172	genome.wustl.edu	37	1	248084999	248084999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005522.1	+1	validated	p.R227H	0.003	232	0%	217	13.4%	0	-	benign(0.004)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L8	391190	genome.wustl.edu	37	1	248112602	248112602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001963.1	+1	provisional	p.W148L	0.000	915	0.1%	916	14.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L8	391190	genome.wustl.edu	37	1	248112813	248112813	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001963.1	+1	provisional	p.G218	0.001	641	0%	643	19.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L8	391190	genome.wustl.edu	37	1	248113023	248113023	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001963.1	+1	provisional	p.I288	0.956	403	0%	361	10%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L5	81466	genome.wustl.edu	37	1	248186039	248186039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355281	+1	known	p.L264M	0.000	426	0.2%	472	15%	0	-	possibly_damaging(0.639)	deleterious(0.05)	deleterious(0.569)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L2	26246	genome.wustl.edu	37	1	248201970	248201970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004686.2	+1	provisional	p.R134H	0.002	698	0.6%	789	15.5%	0	-	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
OR2L2	26246	genome.wustl.edu	37	1	248202005	248202005	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004686.2	+1	provisional	p.G146*	0.001	745	0.1%	845	16%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2L3	391192	genome.wustl.edu	37	1	248224762	248224762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004687.1	+1	provisional	p.R260H	0.001	492	0%	499	16.8%	0	-	benign(0.039)	tolerated(0.5)	neutral(0.012)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2L13	284521	genome.wustl.edu	37	1	248262961	248262961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175911.2	+1	provisional	p.G95E	0.455	812	0%	799	14.4%	0	-	possibly_damaging(0.735)	tolerated(0.07)	deleterious(0.588)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M5	127059	genome.wustl.edu	37	1	248308905	248308905	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004690.1	+1	provisional	p.G152	0.000	1105	0.2%	1095	18%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2M2	391194	genome.wustl.edu	37	1	248343550	248343550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004688.1	+1	provisional	p.G88V	0.000	1201	0.2%	1364	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M3	127062	genome.wustl.edu	37	1	248367054	248367054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004689.1	+1	provisional	p.G229R	0.000	1042	0.2%	1187	15.4%	0	-	benign(0.005)	tolerated(0.89)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T33	391195	genome.wustl.edu	37	1	248436766	248436766	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004695.1	-1	provisional	p.A117	0.999	376	0%	398	8.5%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR2M7	391196	genome.wustl.edu	37	1	248487125	248487125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004691.1	-1	provisional	p.G249V	0.000	690	0.1%	853	15.7%	0	-	benign(0.33)	tolerated(0.15)	neutral(0.344)	HMMPfam_7tm_1,superfamily_SSF81321
OR2M7	391196	genome.wustl.edu	37	1	248487660	248487660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004691.1	-1	provisional	p.L71I	0.647	1152	0.1%	1464	16.3%	0	-	possibly_damaging(0.919)	tolerated(0.21)	neutral(0.413)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512336	248512336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.S87I	0.000	266	0%	259	17.4%	0	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T4	127074	genome.wustl.edu	37	1	248525694	248525694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004696.1	+1	provisional	p.A271V	0.080	467	0%	554	14.8%	0	-	possibly_damaging(0.6)	tolerated(0.2)	neutral(0.257)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T1	26696	genome.wustl.edu	37	1	248569567	248569567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030904.1	+1	provisional	p.A91V	0.088	466	0%	514	21.2%	0	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_SSF81321
OR2G6	391211	genome.wustl.edu	37	1	248685372	248685372	+	Missense_Mutation	SNP	C	C	T	rs143730398	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013355.1	+1	validated	p.A142V	0.000	183	0%	212	19.8%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2T34	127068	genome.wustl.edu	37	1	248737718	248737718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001821.1	-1	provisional	p.G114E	0.004	592	0%	759	16.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T34	127068	genome.wustl.edu	37	1	248737793	248737793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001821.1	-1	provisional	p.G89D	0.000	696	0%	901	11.7%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
SH3BP5L	80851	genome.wustl.edu	37	1	249106265	249106265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030645.1	-1	provisional	p.R339H	1.000	21	0%	19	26.3%	30	10%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SH3BP5L	80851	genome.wustl.edu	37	1	249107212	249107212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030645.1	-1	provisional	p.K229N	1.000	48	0%	34	14.7%	53	22.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3BP5
ZNF672	79894	genome.wustl.edu	37	1	249142288	249142288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024836.1	+1	provisional	p.R272H	0.580	14	0%	14	28.6%	82	25.6%	probably_damaging(0.998)	tolerated(0.23)	deleterious(0.516)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100130262	100130262	genome.wustl.edu	37	1	249142475	249142475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724354.2	-1	model	p.R28C	0.949	54	0%	30	20%	70	18.5%	-	-	-	NULL
ZNF672	79894	genome.wustl.edu	37	1	249142664	249142664	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024836.1	+1	provisional	p.C397	0.042	52	0%	28	21.4%	62	17.7%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF692	55657	genome.wustl.edu	37	1	249148158	249148158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136036.1	-1	provisional	p.K382N	1.000	129	0%	101	19.8%	52	15.3%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PGBD2	267002	genome.wustl.edu	37	1	249211399	249211399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170725.2	+1	validated	p.D206N	1.000	551	0%	582	18.2%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TPO	7173	genome.wustl.edu	37	2	1440027	1440027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000547.5	+1	reviewed	p.A118V	0.000	283	0%	166	24.1%	0	-	benign(0.001)	tolerated(0.96)	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1652818	1652818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.A912T	1.000	33	0%	16	37.5%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
MYT1L	23040	genome.wustl.edu	37	2	1842965	1842965	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.C1010	0.976	19	0%	10	40%	0	-	-	-	-	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1843092	1843092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.A968V	1.000	46	2.2%	31	35.5%	0	-	possibly_damaging(0.931)	tolerated(0.07)	deleterious(0.697)	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1891278	1891278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.S873N	1.000	296	0%	150	28.7%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1915829	1915829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.R556C	1.000	71	0%	27	22.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2HC,superfamily_SSF103637
MYT1L	23040	genome.wustl.edu	37	2	1983515	1983515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.T12M	1.000	55	0%	25	24%	0	-	unknown(0)	deleterious(0)	-	NULL
RNASEH1	246243	genome.wustl.edu	37	2	3595532	3595532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002936.3	-1	validated	p.D255N	1.000	727	0.1%	443	10.4%	42	9.5%	possibly_damaging(0.882)	deleterious(0.01)	deleterious(0.750)	HMMPfam_RnaseH,superfamily_Ribonuclease H-like
RPS7	6201	genome.wustl.edu	37	2	3627792	3627792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011.3	+1	reviewed	p.G150D	1.000	194	0%	96	31.2%	2340	47.9%	benign(0.341)	deleterious(0.03)	deleterious(0.472)	HMMPfam_Ribosomal_S7e
COLEC11	78989	genome.wustl.edu	37	2	3691463	3691463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.A191T	0.255	32	0%	16	25%	2	0%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
RSAD2	91543	genome.wustl.edu	37	2	7023588	7023588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080657.4	+1	validated	p.V145L	0.000	106	0%	88	30.7%	3	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
RRM2	6241	genome.wustl.edu	37	2	10269260	10269260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034.3	+1	reviewed	p.M332I	0.999	258	0%	112	21.4%	60	48.3%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin/RR_like
NOL10	79954	genome.wustl.edu	37	2	10712254	10712254	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024894.2	-1	validated	p.L670	0.396	899	0%	392	28.1%	44	43.1%	-	-	-	NULL
ATP6V1C2	245973	genome.wustl.edu	37	2	10911997	10911997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	p.I168S	0.999	162	0.6%	76	26.3%	4	50%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_V-ATPase_C
ROCK2	9475	genome.wustl.edu	37	2	11337454	11337454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.Q1100H	0.979	364	0%	237	21.5%	15	40%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ROCK2	9475	genome.wustl.edu	37	2	11337668	11337668	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004850.3	-1	reviewed	p.L1088R	1.000	416	0%	325	28.9%	9	11.1%	benign(0.011)	deleterious(0.03)	neutral(0.365)	NULL
GREB1	9687	genome.wustl.edu	37	2	11721031	11721031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389825	+1	known	p.A215V	0.004	41	0%	20	20%	3	0%	unknown(0)	-	-	NULL
TRIB2	28951	genome.wustl.edu	37	2	12863558	12863558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021643.3	+1	reviewed	p.R148I	1.000	79	0%	54	33.3%	13	53.8%	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TRIB2	28951	genome.wustl.edu	37	2	12880639	12880639	+	Missense_Mutation	SNP	C	C	T	rs186204534	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021643.3	+1	reviewed	p.R251W	1.000	123	0%	57	22.8%	19	15.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NBAS	51594	genome.wustl.edu	37	2	15470890	15470890	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015909.2	-1	validated	e36-1	1.000	190	0%	94	27.7%	0	-	-	-	-	-
FAM49A	81553	genome.wustl.edu	37	2	16736399	16736399	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030797.3	-1	validated	p.G282	1.000	80	0%	68	16.2%	3	33.3%	-	-	-	HMMPfam_DUF1394
GEN1	348654	genome.wustl.edu	37	2	17941299	17941299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130009.1	+1	validated	p.D30G	1.000	219	0%	125	26.4%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like
RDH14	57665	genome.wustl.edu	37	2	18736616	18736616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020905.3	-1	validated	p.Q284H	1.000	359	0%	193	26.9%	28	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-binding Rossmann-fold domains
NT5C1B	93034	genome.wustl.edu	37	2	18767563	18767563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002006.1	-1	validated	p.A132D	0.001	317	0%	170	16.5%	0	-	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	NULL
OSR1	130497	genome.wustl.edu	37	2	19552979	19552979	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145260.2	-1	validated	p.T196	0.439	159	0.6%	88	23.9%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WDR35	57539	genome.wustl.edu	37	2	20137624	20137624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006657.1	-1	reviewed	p.G727D	1.000	230	0.4%	171	23.4%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR35	57539	genome.wustl.edu	37	2	20137661	20137661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006657.1	-1	reviewed	p.A715T	1.000	192	0%	141	12.1%	6	16.6%	probably_damaging(0.975)	tolerated(0.05)	deleterious(0.762)	NULL
C2orf43	60526	genome.wustl.edu	37	2	20990056	20990056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021925.2	-1	predicted	p.A86V	0.000	412	0%	320	28.4%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_DUF2305,superfamily_SSF53474
APOB	338	genome.wustl.edu	37	2	21230354	21230354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.P3129L	0.999	449	0%	267	24%	0	-	probably_damaging(0.999)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21231131	21231131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S2870N	0.003	726	0.1%	441	25.6%	0	-	benign(0)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21231297	21231297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S2815T	0.006	549	0%	327	16.8%	0	-	benign(0.381)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21232130	21232130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S2537Y	0.602	410	0%	297	27.6%	0	-	benign(0.323)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21233445	21233445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.L2099M	0.002	291	0%	182	22%	0	-	probably_damaging(0.996)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21237437	21237437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.S1242Y	0.042	249	0%	148	11.5%	0	-	possibly_damaging(0.7)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21250732	21250732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.A679T	0.288	208	0%	130	29.2%	0	-	benign(0.001)	-	-	HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions
APOB	338	genome.wustl.edu	37	2	21251266	21251266	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.Q588*	1.000	222	0%	130	25.4%	0	-	-	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain
APOB	338	genome.wustl.edu	37	2	21251373	21251373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.A552D	0.000	246	0%	132	20.5%	0	-	benign(0.382)	-	-	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain
C2orf44	80304	genome.wustl.edu	37	2	24262037	24262037	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025203.2	-1	validated	p.G110*	0.999	223	0.4%	112	30.4%	6	50%	-	-	-	NULL
ITSN2	50618	genome.wustl.edu	37	2	24443778	24443778	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147152.2	-1	reviewed	p.I1245	0.145	373	0%	207	24.2%	0	-	-	-	-	NULL
ADCY3	109	genome.wustl.edu	37	2	25042873	25042873	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	p.G1121	0.315	26	0%	15	26.7%	5	20%	-	-	-	HMMPfam_Guanylate_cyc,superfamily_A/G_cyclase
DNAJC27	51277	genome.wustl.edu	37	2	25180704	25180704	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016544.1	-1	provisional	p.I127S	1.000	398	0%	234	31.2%	0	-	probably_damaging(0.959)	deleterious(0.04)	deleterious(0.752)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASXL2	55252	genome.wustl.edu	37	2	25966531	25966531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018263.4	-1	validated	p.T892I	0.033	273	0%	177	33.9%	9	44.4%	benign(0.095)	deleterious(0.01)	neutral(0.413)	NULL
RAB10	10890	genome.wustl.edu	37	2	26332691	26332691	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016131.4	+1	validated	p.G81	0.985	197	0%	123	26.8%	175	35.4%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
HADHA	3030	genome.wustl.edu	37	2	26414143	26414143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000182.4	-1	reviewed	p.S756	0.951	70	0%	28	25%	337	43.3%	-	-	-	superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like
GPR113	165082	genome.wustl.edu	37	2	26533594	26533594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.P1001H	0.996	41	0%	19	42.1%	0	-	probably_damaging(0.975)	tolerated(0.08)	deleterious(0.717)	HMMPfam_7tm_2
GPR113	165082	genome.wustl.edu	37	2	26534603	26534603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145168.1	-1	validated	p.L665I	0.001	69	0%	21	19%	0	-	benign(0.345)	tolerated(0.66)	neutral(0.112)	NULL
EPT1	85465	genome.wustl.edu	37	2	26596446	26596446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407686	+1	known	p.K174N	1.000	102	0%	59	30.5%	13	76.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CDP-OH_P_transf
KCNK3	3777	genome.wustl.edu	37	2	26950961	26950961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002246.2	+1	reviewed	p.A237V	1.000	47	0%	19	31.6%	3	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
AGBL5	60509	genome.wustl.edu	37	2	27276355	27276355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	p.L101M	1.000	166	0%	91	35.2%	27	37%	probably_damaging(0.984)	tolerated(0.16)	deleterious(0.490)	NULL
AGBL5	60509	genome.wustl.edu	37	2	27276790	27276790	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	p.S138	1.000	236	0.4%	133	33.8%	28	39.2%	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27456973	27456973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.T1166M	1.000	82	0%	39	20.5%	22	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
CAD	790	genome.wustl.edu	37	2	27459183	27459183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.A1369D	0.778	76	0%	47	36.2%	26	42.3%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMPfam_MGS,superfamily_SSF52335
CAD	790	genome.wustl.edu	37	2	27464247	27464247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.S1956G	1.000	175	0%	82	28%	46	45.6%	benign(0.008)	deleterious(0.03)	neutral(0.364)	superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N
DNAJC5G	285126	genome.wustl.edu	37	2	27500746	27500746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173650.1	+1	provisional	p.A80T	0.998	180	0%	96	13.5%	1	0%	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1
EIF2B4	8890	genome.wustl.edu	37	2	27589993	27589993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172195.3	-1	reviewed	p.R341C	0.995	357	0.3%	210	32.4%	86	47.6%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like
PPM1G	5496	genome.wustl.edu	37	2	27606295	27606295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177983.1	-1	reviewed	p.A380V	1.000	278	0%	105	13.3%	210	12.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PPM1G	5496	genome.wustl.edu	37	2	27607655	27607655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177983.1	-1	reviewed	p.A237D	1.000	191	0%	82	31.7%	147	46.9%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
IFT172	26160	genome.wustl.edu	37	2	27693941	27693941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015662.1	-1	validated	p.S516R	1.000	336	0.3%	180	36.1%	14	71.4%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
C2orf16	84226	genome.wustl.edu	37	2	27804265	27804265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.P1609L	0.000	486	0%	258	32.6%	0	-	unknown(0)	deleterious(0.02)	-	NULL
C2orf16	84226	genome.wustl.edu	37	2	27804762	27804762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032266.3	+1	validated	p.R1775C	0.000	856	0%	439	27.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
SLC4A1AP	22950	genome.wustl.edu	37	2	27886852	27886852	+	Missense_Mutation	SNP	C	C	T	rs190943180	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018158.2	+1	validated	p.A78V	0.000	128	0%	60	40%	12	33.3%	benign(0)	tolerated(1)	-	NULL
PLB1	151056	genome.wustl.edu	37	2	28851472	28851472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153021.4	+1	validated	p.A1235P	0.997	236	0%	115	25.2%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Lipase_GDSL,superfamily_SGNH hydrolase
C2orf71	388939	genome.wustl.edu	37	2	29295463	29295463	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029883.1	-1	provisional	p.V555	1.000	111	0%	47	19.1%	0	-	-	-	-	NULL
C2orf71	388939	genome.wustl.edu	37	2	29296126	29296126	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029883.1	-1	provisional	p.G334	0.023	106	0%	45	28.9%	0	-	-	-	-	NULL
CLIP4	79745	genome.wustl.edu	37	2	29366800	29366800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024692.4	+1	validated	p.A292T	1.000	815	0%	653	28.6%	0	-	probably_damaging(0.972)	tolerated(0.49)	neutral(0.424)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
ALK	238	genome.wustl.edu	37	2	29416201	29416201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.Y1584	0.990	269	0%	136	13.2%	0	-	-	-	-	NULL
ALK	238	genome.wustl.edu	37	2	29420416	29420416	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.P1355	0.000	680	0.4%	443	33.4%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ALK	238	genome.wustl.edu	37	2	29455240	29455240	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.D854	0.157	153	0%	77	26%	0	-	-	-	-	NULL
ALK	238	genome.wustl.edu	37	2	30142942	30142942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004304.3	-1	reviewed	p.A195V	0.969	54	0%	19	52.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
LCLAT1	253558	genome.wustl.edu	37	2	30756159	30756159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182551.3	+1	validated	p.L153I	1.000	613	0.2%	315	30.2%	10	40%	probably_damaging(0.993)	tolerated(0.12)	deleterious(0.711)	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
CAPN13	92291	genome.wustl.edu	37	2	30961293	30961293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144575.2	-1	validated	p.G523C	0.970	53	0%	31	25.8%	5	20%	benign(0.018)	deleterious(0.02)	neutral(0.384)	superfamily_EF-hand
GALNT14	79623	genome.wustl.edu	37	2	31178827	31178827	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024572.2	-1	validated	p.Q161	1.000	861	0.1%	497	27.6%	11	45.4%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
EHD3	30845	genome.wustl.edu	37	2	31483625	31483625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014600.2	+1	validated	p.R251Q	1.000	118	0%	61	16.4%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
XDH	7498	genome.wustl.edu	37	2	31564236	31564236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.D1182Y	1.000	24	0%	11	36.4%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
XDH	7498	genome.wustl.edu	37	2	31570414	31570414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.A1084T	0.979	101	0%	46	28.3%	10	50%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
XDH	7498	genome.wustl.edu	37	2	31587057	31587057	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	p.S866	1.000	193	0%	110	29.1%	13	30.7%	-	-	-	HMMPfam_Ald_Xan_dh_C2,superfamily_Ald_xan_DH_mo_bd
XDH	7498	genome.wustl.edu	37	2	31624195	31624195	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000379.3	-1	reviewed	e4-1	1.000	123	0%	53	18.9%	0	-	-	-	-	-
SPAST	6683	genome.wustl.edu	37	2	32314615	32314615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014946.3	+1	reviewed	p.R176H	1.000	149	0%	87	27.6%	15	66.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_MIT,HMMSmart_SM00745
SPAST	6683	genome.wustl.edu	37	2	32379499	32379499	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014946.3	+1	reviewed	p.S595	0.927	165	0%	106	23.6%	23	39.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC30A6	55676	genome.wustl.edu	37	2	32429693	32429693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017964.2	+1	provisional	p.A234S	1.000	200	0%	104	22.1%	18	16.6%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_Cation_efflux
LOC100288882	100288882	genome.wustl.edu	37	2	32474744	32474744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342199.1	+1	model	p.P30H	0.016	599	0%	338	24.9%	2	0%	benign(0.345)	deleterious(0.02)	deleterious(0.492)	NULL
NLRC4	58484	genome.wustl.edu	37	2	32475920	32475920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360906	-1	known	p.P338H	1.000	214	0.5%	114	31.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32640615	32640615	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.C752	1.000	249	0%	162	27.8%	1	0%	-	-	-	NULL
BIRC6	57448	genome.wustl.edu	37	2	32666457	32666457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.R1291W	1.000	168	0.6%	107	26.2%	3	66.6%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32832617	32832617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.Q4722H	1.000	761	0%	482	29%	67	34.3%	benign(0.089)	tolerated(0.32)	neutral(0.030)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
TTC27	55622	genome.wustl.edu	37	2	33036232	33036232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017735.3	+1	provisional	p.L714M	1.000	221	0%	149	35.6%	17	41.1%	possibly_damaging(0.637)	tolerated(0.3)	neutral(0.252)	superfamily_SSF48452
LTBP1	4052	genome.wustl.edu	37	2	33246075	33246075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	p.A222V	0.000	581	0%	366	26.5%	14	35.7%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_EGF/Laminin
LTBP1	4052	genome.wustl.edu	37	2	33412122	33412122	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	p.T467	0.940	148	0%	99	19.2%	30	23.3%	-	-	-	NULL
LTBP1	4052	genome.wustl.edu	37	2	33540272	33540272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	p.E1223D	0.720	211	0%	122	23.8%	27	40.7%	benign(0)	tolerated(0.46)	neutral(0.012)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CRIM1	51232	genome.wustl.edu	37	2	36737130	36737130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016441.1	+1	provisional	p.E502D	1.000	176	0.6%	103	28.2%	18	16.6%	benign(0.417)	tolerated(0.1)	neutral(0.421)	NULL
VIT	5212	genome.wustl.edu	37	2	36956571	36956571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053276.3	+1	validated	p.L19M	1.000	183	0%	101	23.8%	0	-	probably_damaging(0.978)	tolerated(0.07)	deleterious(0.740)	NULL
VIT	5212	genome.wustl.edu	37	2	37032795	37032795	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053276.3	+1	validated	p.N459	1.000	200	0%	126	15.1%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
VIT	5212	genome.wustl.edu	37	2	37035951	37035951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053276.3	+1	validated	p.A576T	1.000	72	0%	35	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
STRN	6801	genome.wustl.edu	37	2	37076705	37076705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003162.2	-1	validated	p.A746D	1.000	176	0%	109	21.1%	15	60%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
STRN	6801	genome.wustl.edu	37	2	37152248	37152248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003162.2	-1	validated	p.R113I	1.000	200	1%	177	25.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Striatin
HEATR5B	54497	genome.wustl.edu	37	2	37246965	37246965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019024.1	-1	validated	p.A1364V	1.000	177	0%	119	38.7%	17	41.1%	possibly_damaging(0.854)	tolerated(0.05)	deleterious(0.674)	NULL
HEATR5B	54497	genome.wustl.edu	37	2	37255950	37255950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019024.1	-1	validated	p.R1159W	1.000	428	0.5%	242	34.7%	13	38.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_ARM repeat
EIF2AK2	5610	genome.wustl.edu	37	2	37374883	37374883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135651.1	-1	validated	p.V23I	0.000	204	0%	124	29.8%	13	76.9%	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
CEBPZ	10153	genome.wustl.edu	37	2	37441067	37441067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005760.2	-1	validated	p.R829W	0.974	108	0%	68	22.1%	54	37%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_ARM repeat
C2orf56	55471	genome.wustl.edu	37	2	37474692	37474692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144736.4	+1	validated	p.A344S	1.000	276	0%	161	35.4%	13	23%	benign(0.004)	tolerated(0.11)	neutral(0.272)	HMMPfam_DUF185
PRKD3	23683	genome.wustl.edu	37	2	37486743	37486743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005813.3	-1	reviewed	p.A710T	1.000	220	0%	117	26.5%	31	41.9%	benign(0.002)	tolerated(0.53)	neutral(0.007)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FAM82A1	151393	genome.wustl.edu	37	2	38178974	38178974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144713.3	+1	validated	p.A206S	0.000	646	0%	429	26.8%	0	-	possibly_damaging(0.465)	tolerated(0.93)	neutral(0.153)	NULL
GEMIN6	79833	genome.wustl.edu	37	2	39006475	39006475	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409566	+1	known	p.S68	0.007	37	0%	25	56%	7	28.5%	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39053011	39053011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.P998S	1.000	217	0.5%	162	39.5%	10	70%	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	superfamily_P-loop containing nucleoside triphosphate hydrolases
THADA	63892	genome.wustl.edu	37	2	43458127	43458127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.S1941L	0.000	128	0%	55	27.3%	21	28.5%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
THADA	63892	genome.wustl.edu	37	2	43814006	43814006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.E146D	1.000	442	0%	311	24.4%	4	75%	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43937759	43937759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000405000	+1	known	p.Q741H	0.000	61	0%	31	22.6%	1	0%	-	-	-	HMMSmart_PH
ABCG5	64240	genome.wustl.edu	37	2	44065066	44065066	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022436.2	-1	reviewed	p.T58P	0.000	148	0%	89	22.5%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_SSF52540
ABCG8	64241	genome.wustl.edu	37	2	44104812	44104812	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022437.2	+1	reviewed	p.A623	0.000	233	0%	123	28.5%	0	-	-	-	-	NULL
PPM1B	5495	genome.wustl.edu	37	2	44445635	44445635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002706.4	+1	reviewed	p.A365T	1.000	212	0%	146	13%	34	11.7%	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain
PPM1B	5495	genome.wustl.edu	37	2	44457760	44457760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002706.4	+1	reviewed	p.T448I	1.000	192	0%	128	29.7%	23	39.1%	benign(0.051)	deleterious(0.01)	neutral(0.409)	NULL
SIX2	10736	genome.wustl.edu	37	2	45236031	45236031	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016932.4	-1	reviewed	p.H73	1.000	35	0%	23	30.4%	0	-	-	-	-	NULL
SRBD1	55133	genome.wustl.edu	37	2	45829083	45829083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018079.4	-1	validated	p.I74V	0.000	607	0.2%	412	26%	6	0%	benign(0)	tolerated(0.98)	-	NULL
PRKCE	5581	genome.wustl.edu	37	2	46234651	46234651	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005400.2	+1	reviewed	p.R372*	1.000	116	0%	76	28.9%	4	0%	-	-	-	NULL
EPAS1	2034	genome.wustl.edu	37	2	46574171	46574171	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001430.4	+1	reviewed	p.S62	1.000	203	0%	86	11.6%	31	19.3%	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
EPAS1	2034	genome.wustl.edu	37	2	46607687	46607687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001430.4	+1	reviewed	p.T626A	1.000	134	0%	73	27.4%	43	18.6%	probably_damaging(0.961)	tolerated(0.24)	neutral(0.442)	NULL
CALM2	805	genome.wustl.edu	37	2	47389759	47389759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001743.4	-1	validated	p.G26E	1.000	254	0%	153	25.5%	424	43.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
EPCAM	4072	genome.wustl.edu	37	2	47606971	47606971	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002354.2	+1	reviewed	p.D241Y	0.969	290	0%	165	21.8%	913	46.1%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	NULL
MSH6	2956	genome.wustl.edu	37	2	48033408	48033408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000179.2	+1	reviewed	p.T1238A	0.954	346	0%	219	29.2%	39	17.9%	benign(0.004)	tolerated(0.72)	neutral(0.002)	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R21	129285	genome.wustl.edu	37	2	48742027	48742027	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024188.1	+1	validated	NULL	0.996	134	0.7%	96	32.3%	33	54.5%	-	-	-	-
NRXN1	9378	genome.wustl.edu	37	2	50149274	50149274	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412315	-1	known	p.A147V	1.000	190	0%	107	12.1%	0	-	-	-	-	NULL
NRXN1	9378	genome.wustl.edu	37	2	50692638	50692638	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.W1142*	1.000	105	0%	86	23.3%	0	-	-	-	-	HMMPfam_EGF,HMMSmart_EGF
NRXN1	9378	genome.wustl.edu	37	2	50765740	50765740	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.Y638	1.000	218	0%	143	22.4%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50779813	50779813	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.G597	0.914	505	0%	274	23.7%	0	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN1	9378	genome.wustl.edu	37	2	50848385	50848385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.H412Q	1.000	20	0%	20	40%	0	-	probably_damaging(0.991)	tolerated(0.1)	deleterious(0.730)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
PSME4	23198	genome.wustl.edu	37	2	54155294	54155294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014614.2	-1	validated	p.A488V	1.000	216	0.5%	125	21.6%	22	59%	benign(0.002)	tolerated(1)	-	NULL
TSPYL6	388951	genome.wustl.edu	37	2	54482256	54482256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003937.2	-1	validated	p.H345Y	0.007	227	0%	156	35.9%	0	-	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	HMMPfam_NAP
TSPYL6	388951	genome.wustl.edu	37	2	54482709	54482710	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003937.2	-1	validated	p.G193fs	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
C2orf73	129852	genome.wustl.edu	37	2	54586122	54586122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100396.1	+1	validated	p.A139S	0.164	17	0%	14	28.6%	0	-	benign(0.425)	tolerated(0.37)	neutral(0.157)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54851940	54851940	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	e10-1	1.000	135	0%	80	33.8%	0	-	-	-	-	-
SPTBN1	6711	genome.wustl.edu	37	2	54853251	54853251	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.R508	0.965	259	0%	125	24.8%	33	51.5%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN1	6711	genome.wustl.edu	37	2	54870166	54870166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.S1302F	1.000	354	0%	203	28.1%	57	35%	possibly_damaging(0.761)	tolerated(0.15)	deleterious(0.523)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MTIF2	4528	genome.wustl.edu	37	2	55490925	55490925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005369.1	-1	reviewed	p.L24	0.678	390	0%	272	12.1%	42	14.2%	-	-	-	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55522975	55522975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135597.1	-1	validated	p.A1769V	0.963	213	0%	149	26.8%	9	33.3%	benign(0.069)	tolerated(0.34)	neutral(0.028)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55546057	55546057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135597.1	-1	validated	p.Q1081H	1.000	224	0%	148	25%	3	66.6%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55555446	55555446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135597.1	-1	validated	p.R993H	1.000	65	0%	41	22%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
CCDC88A	55704	genome.wustl.edu	37	2	55566682	55566682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135597.1	-1	validated	p.L479P	1.000	185	0%	110	21.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC104	112942	genome.wustl.edu	37	2	55761008	55761008	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080667.5	+1	validated	e5-1	1.000	197	0%	118	35.6%	1	0%	-	-	-	-
EFEMP1	2202	genome.wustl.edu	37	2	56104884	56104884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039348.1	-1	reviewed	p.V253I	0.947	322	0.3%	225	26.7%	5	0%	possibly_damaging(0.909)	tolerated(0.52)	neutral(0.370)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
CCDC85A	114800	genome.wustl.edu	37	2	56420144	56420144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080433.1	+1	provisional	p.R270H	1.000	126	0%	71	25.4%	5	40%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
VRK2	7444	genome.wustl.edu	37	2	58373543	58373543	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130480.1	+1	reviewed	p.S372	0.087	305	0%	219	30.1%	20	35%	-	-	-	NULL
BCL11A	53335	genome.wustl.edu	37	2	60689482	60689482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022893.3	-1	reviewed	p.A189T	1.000	95	0%	71	21.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PUS10	150962	genome.wustl.edu	37	2	61236077	61236077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144709.2	-1	validated	p.P67H	1.000	163	0%	120	25%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PEX13	5194	genome.wustl.edu	37	2	61275703	61275703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002618.3	+1	reviewed	p.R337K	1.000	181	0%	114	28.1%	45	40%	possibly_damaging(0.605)	tolerated(0.38)	neutral(0.227)	superfamily_SH3-domain
USP34	9736	genome.wustl.edu	37	2	61607465	61607465	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.R285*	0.998	242	0%	144	33.3%	6	50%	-	-	-	NULL
FAM161A	84140	genome.wustl.edu	37	2	62067223	62067223	+	Missense_Mutation	SNP	G	G	A	rs183615774	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032180.2	-1	validated	p.R306W	0.991	596	0%	321	21.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0564
WDPCP	51057	genome.wustl.edu	37	2	63631515	63631515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015910.4	-1	validated	p.R368H	0.183	731	0.3%	577	13%	2	50%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
PELI1	57162	genome.wustl.edu	37	2	64322145	64322145	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020651.3	-1	validated	p.G316	1.000	438	0.2%	279	32.3%	26	42.3%	-	-	-	HMMPfam_Pellino
PELI1	57162	genome.wustl.edu	37	2	64327612	64327612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020651.3	-1	validated	p.H75Y	1.000	595	0.3%	364	31%	12	58.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
CEP68	23177	genome.wustl.edu	37	2	65299444	65299444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015147.2	+1	validated	p.G405D	0.094	121	0%	74	33.8%	15	33.3%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
SPRED2	200734	genome.wustl.edu	37	2	65540997	65540997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181784.2	-1	validated	p.R299W	0.984	140	0%	79	32.9%	17	35.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
WDR92	116143	genome.wustl.edu	37	2	68358371	68358371	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138458.2	-1	validated	p.*358	1.000	227	0%	116	33.6%	6	50%	-	-	-	NULL
WDR92	116143	genome.wustl.edu	37	2	68361860	68361860	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457114	-1	known	p.A84V	0.990	141	0%	79	15.2%	12	33.3%	-	-	-	superfamily_WD40 repeat-like
ARHGAP25	9938	genome.wustl.edu	37	2	69015006	69015006	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007231.2	+1	validated	p.S128	0.998	566	0.2%	377	27.9%	3	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARHGAP25	9938	genome.wustl.edu	37	2	69034577	69034577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000497259	+1	known	p.T72M	0.933	347	0%	206	20.9%	8	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
GKN2	200504	genome.wustl.edu	37	2	69174362	69174362	+	Nonsense_Mutation	SNP	G	G	A	rs183499773	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182536.2	-1	provisional	p.R78*	0.996	247	0%	170	21.2%	0	-	-	-	-	HMMPfam_BRICHOS
GKN2	200504	genome.wustl.edu	37	2	69177313	69177313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182536.2	-1	provisional	p.I50S	0.590	167	0%	90	22.2%	0	-	benign(0.066)	tolerated(0.88)	neutral(0.004)	NULL
GKN1	56287	genome.wustl.edu	37	2	69206004	69206004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019617.3	+1	reviewed	p.G83D	0.818	254	0%	150	32.7%	0	-	benign(0.055)	tolerated(0.25)	neutral(0.041)	HMMPfam_BRICHOS
AAK1	22848	genome.wustl.edu	37	2	69769735	69769735	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014911.3	-1	reviewed	p.L152I	1.000	380	0%	220	30%	2	50%	probably_damaging(0.993)	tolerated(0.13)	deleterious(0.703)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANXA4	307	genome.wustl.edu	37	2	70015269	70015269	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001153.3	+1	reviewed	p.G31	0.003	76	0%	44	50%	126	31.7%	-	-	-	superfamily_Annexin,HMMPfam_Annexin
GMCL1	64395	genome.wustl.edu	37	2	70066650	70066650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178439.3	+1	provisional	p.E149G	1.000	109	0%	69	20.3%	8	25%	benign(0.221)	tolerated(0.14)	neutral(0.272)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
ASPRV1	151516	genome.wustl.edu	37	2	70187920	70187920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152792.2	-1	validated	p.R301C	1.000	536	0%	222	17.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C2orf42	54980	genome.wustl.edu	37	2	70408296	70408296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017880.1	-1	predicted	p.S274	0.999	233	0%	128	27.3%	5	40%	-	-	-	NULL
C2orf42	54980	genome.wustl.edu	37	2	70408679	70408679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017880.1	-1	predicted	p.T147A	1.000	149	0%	77	29.9%	12	25%	benign(0.27)	tolerated(0.68)	neutral(0.031)	NULL
CD207	50489	genome.wustl.edu	37	2	71060099	71060099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015717.2	-1	validated	p.Y217H	0.994	203	0%	136	27.2%	0	-	probably_damaging(0.996)	tolerated(0.43)	deleterious(0.475)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
ANKRD53	79998	genome.wustl.edu	37	2	71211313	71211313	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024933.3	+1	validated	p.L322I	0.000	139	0%	64	34.4%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
TEX261	113419	genome.wustl.edu	37	2	71219099	71219099	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144582.2	-1	validated	p.V55	1.000	51	0%	32	40.6%	47	57.4%	-	-	-	HMMPfam_Erv26
ZNF638	27332	genome.wustl.edu	37	2	71653808	71653808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.E1603D	1.000	251	0%	154	30.5%	54	61.1%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
DYSF	8291	genome.wustl.edu	37	2	71747339	71747339	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	e11+1	1.000	383	0%	203	35%	0	-	-	-	-	-
DYSF	8291	genome.wustl.edu	37	2	71891504	71891504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130987.1	+1	reviewed	p.D1704N	1.000	224	0%	111	36.9%	11	9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2,superfamily_C2_CaLB
CCT7	10574	genome.wustl.edu	37	2	73466900	73466900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006429.3	+1	reviewed	p.D46N	1.000	77	0%	51	9.8%	260	13.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_TCP1_1,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FBXO41	150726	genome.wustl.edu	37	2	73491552	73491552	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080410.2	-1	validated	p.R615*	1.000	103	0%	45	33.3%	8	12.5%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73678197	73678197	+	Missense_Mutation	SNP	G	G	A	rs183839621	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.A1514T	0.000	384	0.3%	246	29.3%	2	100%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73680976	73680976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.D2440V	1.000	178	0%	109	11%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ALMS1	7840	genome.wustl.edu	37	2	73747144	73747144	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	e11+1	0.991	496	0%	339	16.8%	0	-	-	-	-	-
C2orf78	388960	genome.wustl.edu	37	2	74041222	74041222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080474.1	+1	predicted	p.A239D	0.015	359	0%	219	26.9%	0	-	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
STAMBP	10617	genome.wustl.edu	37	2	74072341	74072341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006463.3	+1	reviewed	p.E109D	0.585	189	0%	89	12.4%	42	21.4%	benign(0.004)	tolerated(0.6)	neutral(0.004)	NULL
TET3	200424	genome.wustl.edu	37	2	74273836	74273836	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144993.1	+1	provisional	p.R129	0.868	154	0%	76	14.5%	6	16.6%	-	-	-	NULL
BOLA3	388962	genome.wustl.edu	37	2	74362730	74362730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212552.2	-1	validated	p.P105L	1.000	280	0.4%	146	16.4%	96	26%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BolA,superfamily_BolA
SLC4A5	57835	genome.wustl.edu	37	2	74474247	74474247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021196.3	-1	reviewed	p.A659T	0.999	201	0%	97	12.4%	2	0%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_HCO3_cotransp
SLC4A5	57835	genome.wustl.edu	37	2	74482914	74482914	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021196.3	-1	reviewed	p.P338H	1.000	55	0%	23	17.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
DCTN1	1639	genome.wustl.edu	37	2	74592235	74592235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004082.3	-1	reviewed	p.G1055C	1.000	405	0.2%	250	13.2%	132	6.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
WBP1	23559	genome.wustl.edu	37	2	74687007	74687007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012477.2	+1	reviewed	p.W60C	1.000	108	0%	52	30.8%	172	40.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CCDC142	84865	genome.wustl.edu	37	2	74708600	74708600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032779.3	-1	validated	p.L363I	0.141	149	0.7%	70	15.7%	2	0%	benign(0.022)	tolerated(0.34)	neutral(0.024)	NULL
AUP1	550	genome.wustl.edu	37	2	74755129	74755129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181575.3	-1	reviewed	p.L226F	1.000	243	0%	121	36.4%	267	45.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LOXL3	84695	genome.wustl.edu	37	2	74762824	74762824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032603.2	-1	reviewed	p.G436E	0.929	271	0.4%	108	26.9%	1	0%	benign(0.045)	tolerated(0.59)	neutral(0.007)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
LOXL3	84695	genome.wustl.edu	37	2	74777347	74777347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032603.2	-1	reviewed	p.R148C	1.000	209	0%	109	32.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Srcr_receptor
C2orf65	130951	genome.wustl.edu	37	2	74802690	74802690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138804.3	-1	predicted	p.G317R	0.951	523	0%	299	20.4%	13	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C2orf65	130951	genome.wustl.edu	37	2	74867341	74867341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138804.3	-1	predicted	p.P21H	1.000	120	0%	68	39.7%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HK2	3099	genome.wustl.edu	37	2	75061754	75061754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	p.H16R	0.996	20	0%	18	27.8%	39	69.2%	benign(0.003)	tolerated(0.05)	neutral(0.345)	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK2	3099	genome.wustl.edu	37	2	75117923	75117923	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	e18-1	1.000	758	0%	412	27.2%	0	-	-	-	-	-
MRPL19	9801	genome.wustl.edu	37	2	75879774	75879774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014763.3	+1	reviewed	p.E156K	1.000	592	0%	362	29.8%	85	58.8%	possibly_damaging(0.895)	tolerated(0.07)	deleterious(0.672)	NULL
REG1A	5967	genome.wustl.edu	37	2	79348783	79348783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002909.4	+1	reviewed	p.R54C	0.001	467	0%	280	26.4%	0	-	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
REG1A	5967	genome.wustl.edu	37	2	79349974	79349974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002909.4	+1	reviewed	p.R110H	0.915	256	0.4%	153	25.5%	0	-	benign(0.007)	tolerated(0.12)	neutral(0.261)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
REG3A	5068	genome.wustl.edu	37	2	79385862	79385862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002580.1	-1	reviewed	p.R37Q	0.001	117	0%	65	36.9%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
CTNNA2	1496	genome.wustl.edu	37	2	80816438	80816438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004389.3	+1	validated	p.A673T	1.000	209	0.5%	113	23.9%	2	0%	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA2	1496	genome.wustl.edu	37	2	80846259	80846259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402739	+1	known	p.V827A	1.000	25	0%	26	38.5%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
CTNNA2	1496	genome.wustl.edu	37	2	80846323	80846323	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402739	+1	known	p.P848	0.998	41	0%	34	32.4%	0	-	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
C2orf89	129293	genome.wustl.edu	37	2	85066424	85066424	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080824.1	-1	predicted	p.T231	0.058	270	0.4%	198	32.3%	5	0%	-	-	-	NULL
KCMF1	56888	genome.wustl.edu	37	2	85280314	85280314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020122.4	+1	validated	p.E310K	1.000	114	0%	81	42%	115	47.8%	possibly_damaging(0.896)	deleterious(0.01)	deleterious(0.759)	NULL
RETSAT	54884	genome.wustl.edu	37	2	85571194	85571194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017750.3	-1	validated	p.E487D	0.968	144	0%	62	24.2%	52	42.3%	benign(0.078)	tolerated(0.2)	neutral(0.054)	superfamily_FAD/NAD(P)-binding domain
ELMOD3	84173	genome.wustl.edu	37	2	85604556	85604556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032213.4	+1	validated	p.M233V	1.000	64	0%	40	30%	10	30%	benign(0.249)	tolerated(0.27)	neutral(0.059)	HMMPfam_ELMO_CED12
GGCX	2677	genome.wustl.edu	37	2	85785695	85785695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000821.4	-1	reviewed	p.R136Q	1.000	172	0%	76	30.3%	24	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_VKG_Carbox,HMMSmart_HTTM
GGCX	2677	genome.wustl.edu	37	2	85785774	85785774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423570	-1	known	p.P119H	0.995	120	0.8%	66	24.2%	0	-	unknown(0)	-	-	NULL
C2orf68	388969	genome.wustl.edu	37	2	85836108	85836108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013649.3	-1	validated	p.R154H	0.997	105	0%	49	18.4%	50	30%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
POLR1A	25885	genome.wustl.edu	37	2	86270158	86270158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015425.3	-1	validated	p.A1099D	0.962	154	0%	86	25.6%	10	50%	benign(0.311)	tolerated(0.48)	neutral(0.107)	HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1A	25885	genome.wustl.edu	37	2	86305275	86305275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015425.3	-1	validated	p.D407N	1.000	178	0%	96	39.6%	11	36.3%	probably_damaging(0.99)	tolerated(0.3)	deleterious(0.470)	HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
SMYD1	150572	genome.wustl.edu	37	2	88383924	88383924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198274.2	+1	provisional	p.R76H	1.000	271	0.7%	130	26.9%	0	-	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,superfamily_SSF82199
EIF2AK3	9451	genome.wustl.edu	37	2	88874672	88874672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004836.5	-1	reviewed	p.D777Y	0.980	1249	0.2%	921	28%	17	52.9%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IGKV4-1	28908	genome.wustl.edu	37	2	89185662	89185662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390243	+1	known	p.S119I	0.000	206	0%	150	31.3%	8	0%	benign(0.03)	deleterious(0.04)	neutral(0.350)	HMMPfam_V-set,superfamily_SSF48726
IGKV1-9	28941	genome.wustl.edu	37	2	89309575	89309575	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493819	-1	known	p.S85	0.997	535	0.2%	348	30.5%	7	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV3-20	28912	genome.wustl.edu	37	2	89442224	89442224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000492167	-1	known	p.P61S	0.996	288	0%	157	31.2%	52	1.9%	benign(0.233)	tolerated(0.13)	neutral(0.276)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1-37	28931	genome.wustl.edu	37	2	89597030	89597030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000465170	-1	known	p.Y114	0.000	329	0%	196	12.2%	0	-	-	-	-	superfamily_Immunoglobulin
IGKV3D-20	28874	genome.wustl.edu	37	2	90077790	90077790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390270	+1	known	p.A5V	0.001	309	0%	233	25.3%	22	0%	benign(0.043)	tolerated(0.25)	neutral(0.040)	NULL
IGKV3D-20	28874	genome.wustl.edu	37	2	90078279	90078279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390270	+1	known	p.V106M	0.086	305	0%	191	20.4%	14	0%	benign(0.01)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGKV1D-13	28902	genome.wustl.edu	37	2	90193138	90193138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390275	+1	known	p.C22Y	0.002	1034	0%	657	20.5%	1	0%	possibly_damaging(0.558)	deleterious(0.01)	deleterious(0.596)	NULL
IGKV1D-42	28892	genome.wustl.edu	37	2	90229091	90229091	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390278	+1	known	p.L9	0.037	410	0.2%	269	26.4%	0	-	-	-	-	NULL
IGKV1D-8	28904	genome.wustl.edu	37	2	90260171	90260171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000471857	+1	known	p.D92Y	0.980	634	0.2%	364	26.6%	1	0%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
NCAPH	23397	genome.wustl.edu	37	2	97031743	97031743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015341.3	+1	reviewed	p.G610*	0.002	227	0%	115	33.9%	18	0%	-	-	-	HMMPfam_Barren
KANSL3	55683	genome.wustl.edu	37	2	97278635	97278635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115016.1	-1	validated	p.S278P	1.000	33	0%	17	41.2%	15	26.6%	benign(0)	tolerated(1)	-	superfamily_SSF53474
LMAN2L	81562	genome.wustl.edu	37	2	97373561	97373561	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142292.1	-1	validated	p.D276A	0.998	130	0%	77	31.2%	23	34.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
LMAN2L	81562	genome.wustl.edu	37	2	97403763	97403763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142292.1	-1	validated	p.N77D	1.000	210	0%	152	29.6%	30	40%	benign(0.015)	tolerated(0.19)	neutral(0.050)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
CNNM4	26504	genome.wustl.edu	37	2	97427038	97427038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.T101I	0.000	81	0%	35	17.1%	7	14.2%	benign(0.067)	tolerated(0.24)	neutral(0.042)	NULL
CNNM4	26504	genome.wustl.edu	37	2	97427570	97427570	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.G278	1.000	112	0%	42	31%	8	37.5%	-	-	-	HMMPfam_DUF21
CNNM4	26504	genome.wustl.edu	37	2	97427896	97427896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.R387H	0.260	207	0%	82	23.2%	13	23%	benign(0.013)	tolerated(0.14)	neutral(0.250)	HMMPfam_CBS
CNNM4	26504	genome.wustl.edu	37	2	97427900	97427900	+	Silent	SNP	C	C	T	rs56190267		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.S388	0.137	209	0.5%	82	28%	14	57.1%	-	-	-	HMMPfam_CBS
CNNM4	26504	genome.wustl.edu	37	2	97462863	97462863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.S506L	1.000	77	0%	50	24%	10	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ANKRD23	200539	genome.wustl.edu	37	2	97505473	97505473	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144994.7	-1	reviewed	p.V271	0.023	17	0%	11	45.5%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SEMA4C	54910	genome.wustl.edu	37	2	97526493	97526493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017789.4	-1	validated	p.R791H	1.000	35	0%	21	19%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD36B	57730	genome.wustl.edu	37	2	98169633	98169633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025190.3	-1	provisional	p.T192I	0.032	83	0%	93	29%	0	-	-	-	-	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253451	98253451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001714896.2	-1	model	p.R267H	0.705	131	0.8%	74	32.4%	0	-	-	-	-	HMMSmart_SM00398,superfamily_HMG-box
ZAP70	7535	genome.wustl.edu	37	2	98351824	98351824	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079.3	+1	reviewed	p.I398	0.997	77	0%	42	23.8%	3	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZAP70	7535	genome.wustl.edu	37	2	98354219	98354219	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079.3	+1	reviewed	e10-1	1.000	181	0%	71	25.4%	0	-	-	-	-	-
ZAP70	7535	genome.wustl.edu	37	2	98354297	98354297	+	Silent	SNP	C	C	T	rs184903382	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079.3	+1	reviewed	p.S520	0.720	269	0%	107	29.9%	5	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CNGA3	1261	genome.wustl.edu	37	2	98986532	98986532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001298.2	+1	reviewed	p.L32I	1.000	127	0%	78	29.5%	0	-	benign(0.113)	tolerated(0.23)	neutral(0.051)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99012937	99012937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001298.2	+1	reviewed	p.T435M	0.979	104	1%	46	32.6%	0	-	benign(0.312)	tolerated(0.09)	neutral(0.394)	superfamily_cNMP_binding
INPP4A	3631	genome.wustl.edu	37	2	99152615	99152615	+	Silent	SNP	G	G	A	rs61748140	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.T137	0.997	105	0%	76	23.7%	3	33.3%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
INPP4A	3631	genome.wustl.edu	37	2	99193602	99193602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.R933C	1.000	54	0%	25	36%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC50	25972	genome.wustl.edu	37	2	99227273	99227273	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014044.5	+1	validated	p.G106*	1.000	295	0.3%	143	27.3%	46	2.1%	-	-	-	HMMPfam_UNC-50
MITD1	129531	genome.wustl.edu	37	2	99786039	99786039	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138798.1	-1	provisional	p.G210*	1.000	346	0%	222	26.6%	40	32.5%	-	-	-	NULL
AFF3	3899	genome.wustl.edu	37	2	100168024	100168024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025108.1	-1	reviewed	p.P1223Q	1.000	81	0%	46	19.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_AF-4
CHST10	9486	genome.wustl.edu	37	2	101009860	101009860	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004854.3	-1	validated	p.P306	0.056	402	0%	204	21.6%	62	46.7%	-	-	-	HMMPfam_Sulfotransfer_2
CHST10	9486	genome.wustl.edu	37	2	101010054	101010054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004854.3	-1	validated	p.R242C	1.000	668	0.4%	315	34.3%	34	52.9%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Sulfotransfer_2
PDCL3	79031	genome.wustl.edu	37	2	101192845	101192845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024065.4	+1	validated	p.A203T	1.000	177	0%	108	27.8%	124	38.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd
TBC1D8	11138	genome.wustl.edu	37	2	101638193	101638193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102426.1	-1	validated	p.G911E	1.000	34	0%	15	26.7%	40	50%	benign(0.196)	deleterious(0.02)	neutral(0.402)	superfamily_EF-hand
C2orf29	55571	genome.wustl.edu	37	2	101885512	101885512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017546.4	+1	validated	p.A417S	1.000	149	0%	70	32.9%	112	41.9%	benign(0.409)	tolerated(0.37)	neutral(0.151)	HMMPfam_DUF2363
CREG2	200407	genome.wustl.edu	37	2	102000072	102000072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153836.3	-1	validated	p.K178N	1.000	83	0%	41	26.8%	0	-	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	superfamily_FMN_binding
MAP4K4	9448	genome.wustl.edu	37	2	102480474	102480474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145686.2	+1	reviewed	p.K686N	1.000	451	0%	264	32.2%	6	0%	possibly_damaging(0.499)	tolerated(0.33)	neutral(0.191)	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102482931	102482931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145686.2	+1	reviewed	p.L749P	1.000	132	0%	54	20.4%	57	42.1%	unknown(0)	tolerated(0.35)	-	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102483707	102483707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145686.2	+1	reviewed	p.R797H	1.000	93	0%	57	10.5%	77	11.6%	unknown(0)	tolerated(0.34)	-	NULL
IL1R1	3554	genome.wustl.edu	37	2	102791954	102791954	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000877.2	+1	reviewed	p.T384	0.993	569	0.2%	368	16.6%	45	35.5%	-	-	-	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
IL1RL2	8808	genome.wustl.edu	37	2	102818146	102818146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003854.2	+1	reviewed	p.E207G	0.000	158	0%	98	37.8%	1	0%	benign(0.002)	tolerated(0.42)	neutral(0.014)	HMMSmart_IG,superfamily_SSF48726
IL1RL2	8808	genome.wustl.edu	37	2	102851535	102851535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003854.2	+1	reviewed	p.E492D	0.066	192	0%	101	30.7%	1	0%	benign(0.15)	tolerated(0.21)	neutral(0.057)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
IL18RAP	8807	genome.wustl.edu	37	2	103068507	103068507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003853.2	+1	reviewed	p.R556C	0.698	484	0%	247	20.2%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
SLC9A4	389015	genome.wustl.edu	37	2	103090380	103090380	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011552.3	+1	validated	p.E54	0.009	449	0%	269	31.6%	20	55%	-	-	-	NULL
TMEM182	130827	genome.wustl.edu	37	2	103378692	103378692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144632.3	+1	validated	p.A6T	0.873	158	0%	117	29.1%	0	-	benign(0.135)	tolerated(0.09)	neutral(0.308)	NULL
TMEM182	130827	genome.wustl.edu	37	2	103414411	103414411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144632.3	+1	validated	p.A141T	0.721	145	0%	79	34.2%	5	20%	benign(0)	tolerated(1)	-	NULL
TGFBRAP1	9392	genome.wustl.edu	37	2	105924216	105924216	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142621.1	-1	validated	p.C181*	1.000	292	0%	163	33.7%	3	0%	-	-	-	NULL
NCK2	8440	genome.wustl.edu	37	2	106471675	106471675	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004720.2	+1	reviewed	p.P52	0.895	79	0%	39	25.6%	64	42.1%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
RGPD3	653489	genome.wustl.edu	37	2	107040650	107040650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.A1258D	0.999	974	0.1%	652	34.5%	19	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
RGPD3	653489	genome.wustl.edu	37	2	107049639	107049639	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.R770*	0.635	1210	0%	854	14.1%	0	-	-	-	-	NULL
GCC2	9648	genome.wustl.edu	37	2	109113543	109113543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181453.3	+1	reviewed	p.A1587V	1.000	426	0.2%	237	29.5%	18	38.8%	benign(0.04)	-	-	NULL
LIMS1	3987	genome.wustl.edu	37	2	109288832	109288832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004987.3	+1	reviewed	p.P92L	1.000	261	0%	141	7.8%	28	50%	possibly_damaging(0.929)	tolerated(0.08)	deleterious(0.676)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
LIMS1	3987	genome.wustl.edu	37	2	109289423	109289423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004987.3	+1	reviewed	p.E144D	0.992	379	0%	305	11.1%	41	53.6%	benign(0.001)	tolerated(1)	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
RANBP2	5903	genome.wustl.edu	37	2	109371463	109371463	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.R769*	0.982	796	0%	555	26.8%	21	19%	-	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109382283	109382283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.A1763V	0.040	294	0%	213	10.8%	70	17.1%	benign(0.133)	-	-	NULL
SEPT10	151011	genome.wustl.edu	37	2	110350656	110350656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144710.2	-1	reviewed	p.S24F	0.011	400	0%	241	26.6%	10	10%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
BCL2L11	10018	genome.wustl.edu	37	2	111907697	111907697	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138621.3	+1	reviewed	p.D157	0.998	94	0%	38	31.6%	20	30%	-	-	-	HMMPfam_Bclx_interact
MERTK	10461	genome.wustl.edu	37	2	112751980	112751980	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006343.2	+1	reviewed	p.H483	0.008	261	0%	168	31.5%	19	47.3%	-	-	-	superfamily_FN_III-like
ZC3H8	84524	genome.wustl.edu	37	2	112996096	112996096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032494.2	-1	validated	p.S56P	0.056	352	0%	197	16.2%	10	40%	possibly_damaging(0.646)	deleterious(0.05)	deleterious(0.572)	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113088959	113088961	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198581.2	+1	validated	p.D825in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
RGPD8	727851	genome.wustl.edu	37	2	113146812	113146812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.P1237L	0.015	1107	0.2%	707	24.9%	2	0%	benign(0.287)	deleterious(0.01)	deleterious(0.494)	NULL
TTL	150465	genome.wustl.edu	37	2	113243506	113243506	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153712.4	+1	validated	p.G57V	1.000	172	0%	74	25.7%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC20A1	6574	genome.wustl.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005415.3	+1	provisional	p.R332fs	0.023:0.531	-	-	-	-	-	-	-	-	-	HMMPfam_PHO4
CKAP2L	150468	genome.wustl.edu	37	2	113522151	113522151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152515.3	-1	validated	p.A9T	0.021	33	0%	23	21.7%	7	28.5%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
IL36B	27177	genome.wustl.edu	37	2	113786603	113786603	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014438.3	-1	reviewed	p.K58	0.025	483	0%	305	31.8%	1	0%	-	-	-	superfamily_Cytokine
IL1F10	84639	genome.wustl.edu	37	2	113832846	113832846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032556.4	+1	reviewed	p.L122M	0.996	300	0%	173	26.6%	0	-	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
PSD4	23550	genome.wustl.edu	37	2	113950908	113950908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012455.2	+1	validated	p.R665C	1.000	79	0%	31	19.4%	22	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
RABL2A	11159	genome.wustl.edu	37	2	114398525	114398525	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007082.3	+1	reviewed	p.E118*	0.998	200	0%	95	25.3%	25	4%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC93	54520	genome.wustl.edu	37	2	118764313	118764313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019044.3	-1	validated	p.T79M	1.000	149	0%	90	30%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KOG2701
INSIG2	51141	genome.wustl.edu	37	2	118864361	118864361	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016133.2	+1	reviewed	p.L140	1.000	262	0%	166	30.7%	15	60%	-	-	-	HMMPfam_INSIG
TMEM37	140738	genome.wustl.edu	37	2	120194933	120194933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183240.2	+1	validated	p.C164R	1.000	526	0%	308	30.5%	24	16.6%	benign(0.244)	deleterious(0.01)	neutral(0.430)	NULL
ENSG00000163075	0	genome.wustl.edu	37	2	120409636	120409636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443972	+1	known	p.G361*	0.893	186	0%	106	31.1%	2	50%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
TMEM177	80775	genome.wustl.edu	37	2	120439276	120439276	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105198.1	+1	validated	p.L283V	1.000	223	0%	103	36.9%	25	52%	benign(0.022)	tolerated(0.34)	neutral(0.024)	NULL
PTPN4	5775	genome.wustl.edu	37	2	120677644	120677644	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002830.2	+1	reviewed	e11-1	1.000	192	0%	121	29.8%	0	-	-	-	-	-
GLI2	2736	genome.wustl.edu	37	2	121729540	121729540	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005270.4	+1	reviewed	p.A361	0.007	41	0%	19	42.1%	0	-	-	-	-	NULL
GLI2	2736	genome.wustl.edu	37	2	121740367	121740367	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005270.4	+1	reviewed	p.P532S	1.000	59	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
CLASP1	23332	genome.wustl.edu	37	2	122125234	122125234	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.A1272	0.980	91	0%	34	29.4%	16	68.7%	-	-	-	superfamily_ARM repeat
TSN	7247	genome.wustl.edu	37	2	122518995	122518995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004622.2	+1	reviewed	p.H90Y	1.000	462	0.2%	257	26.1%	72	44.4%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_Translin,superfamily_Translin
CNTNAP5	129684	genome.wustl.edu	37	2	125204413	125204413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130773.2	+1	reviewed	p.L273I	1.000	107	0%	47	27.7%	0	-	benign(0.022)	tolerated(0.2)	neutral(0.050)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
ERCC3	2071	genome.wustl.edu	37	2	128015278	128015278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000122.1	-1	reviewed	p.S748I	1.000	196	0.5%	102	13.7%	58	29.3%	possibly_damaging(0.609)	deleterious(0.01)	deleterious(0.617)	NULL
ERCC3	2071	genome.wustl.edu	37	2	128050352	128050352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000122.1	-1	reviewed	p.A102D	1.000	104	0%	63	17.5%	26	42.3%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GPR17	2840	genome.wustl.edu	37	2	128409012	128409012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005291.2	+1	validated	p.R263C	1.000	38	0%	20	30%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SAP130	79595	genome.wustl.edu	37	2	128712741	128712741	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024545.3	-1	validated	p.A738	0.001	173	0%	108	21.3%	36	50%	-	-	-	NULL
SAP130	79595	genome.wustl.edu	37	2	128775396	128775396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024545.3	-1	validated	p.P95H	1.000	150	0%	69	21.7%	12	33.3%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128927906	128927906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020120.3	+1	validated	p.V989G	0.999	154	0%	120	26.7%	26	42.3%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_UDP-g_GGTase
POTEF	728378	genome.wustl.edu	37	2	130865653	130865653	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099771.2	-1	validated	e6-1	0.008	220	0%	160	25%	0	-	-	-	-	-
CCDC74B	91409	genome.wustl.edu	37	2	130897481	130897481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409488	-1	known	p.R228K	0.153	52	0%	26	19.2%	3	0%	unknown(0)	-	-	NULL
LOC653269	653269	genome.wustl.edu	37	2	131258107	131258107	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928585.2	-1	model	e4+2	0.749	317	0%	241	14.5%	0	-	-	-	-	-
LOC653269	653269	genome.wustl.edu	37	2	131266407	131266407	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928585.2	-1	model	p.H134	0.001	193	0%	105	28.6%	0	-	-	-	-	superfamily_Ankyrin repeat
LOC653781	653781	genome.wustl.edu	37	2	131377726	131377726	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929706.3	+1	model	e4+2	0.460	145	0%	101	17.8%	0	-	-	-	-	-
LOC653781	653781	genome.wustl.edu	37	2	131415056	131415056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929706.3	+1	model	p.G908D	1.000	195	0%	108	22.2%	1	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
FAM123C	205147	genome.wustl.edu	37	2	131521501	131521501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105193.1	+1	validated	p.A619V	0.112	51	0%	20	30%	0	-	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	NULL
ARHGEF4	50649	genome.wustl.edu	37	2	131796516	131796516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015320.2	+1	reviewed	p.V220I	0.999	15	0%	12	33.3%	3	0%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
TUBA3D	113457	genome.wustl.edu	37	2	132238049	132238049	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080386.2	+1	validated	p.P261	0.964	241	0.8%	120	11.7%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
ZNF806	646915	genome.wustl.edu	37	2	133075993	133075993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724242.2	+1	model	p.A485V	0.368	250	0%	205	17.1%	0	-	-	-	-	NULL
GPR39	2863	genome.wustl.edu	37	2	133174981	133174981	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.T122	0.249	108	0%	59	32.2%	1	100%	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
GPR39	2863	genome.wustl.edu	37	2	133175207	133175207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001508.2	+1	validated	p.H198Y	0.998	94	0%	41	14.6%	7	14.2%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LYPD1	116372	genome.wustl.edu	37	2	133403820	133403820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144586.5	-1	validated	p.A75V	0.929	61	0%	30	23.3%	17	35.2%	possibly_damaging(0.913)	deleterious(0.02)	deleterious(0.748)	NULL
MGAT5	4249	genome.wustl.edu	37	2	135099273	135099273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002410.3	+1	validated	p.S307F	1.000	281	0%	221	27.6%	8	0%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	NULL
TMEM163	81615	genome.wustl.edu	37	2	135214322	135214322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030923.4	-1	validated	p.V279M	1.000	181	0%	70	14.3%	1	0%	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
CCNT2	905	genome.wustl.edu	37	2	135712028	135712028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058241.1	+1	reviewed	p.P668L	1.000	244	0%	153	23.5%	12	66.6%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
YSK4	80122	genome.wustl.edu	37	2	135744563	135744563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025052.3	-1	validated	p.C627R	0.000	460	0%	295	14.9%	1	0%	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	135920109	135920109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283060	-1	known	p.A573V	0.000	92	0%	62	38.7%	0	-	unknown(0)	-	-	NULL
ZRANB3	84083	genome.wustl.edu	37	2	136071088	136071088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032143.2	-1	provisional	p.R313C	1.000	304	0%	164	29.9%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
R3HDM1	23518	genome.wustl.edu	37	2	136380239	136380239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015361.2	+1	provisional	p.Y145C	1.000	24	0%	24	29.2%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBXN4	23190	genome.wustl.edu	37	2	136513106	136513106	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014607.3	+1	validated	p.T119fs	0.979	-	-	-	-	-	-	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136546031	136546031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.A1883T	0.995	439	0%	224	11.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LCT	3938	genome.wustl.edu	37	2	136566930	136566930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.G996E	1.000	167	0%	81	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LCT	3938	genome.wustl.edu	37	2	136594350	136594350	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.I130	0.370	114	0%	71	18.3%	0	-	-	-	-	superfamily_Glyco_hydro_cat
SPOPL	339745	genome.wustl.edu	37	2	139316877	139316877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001664.2	+1	validated	p.M228I	1.000	127	0%	75	32%	11	72.7%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
NXPH2	11249	genome.wustl.edu	37	2	139428697	139428697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007226.2	-1	validated	p.A197V	0.996	157	0%	101	36.6%	0	-	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	HMMPfam_Neurexophilin
LRP1B	53353	genome.wustl.edu	37	2	141081485	141081485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.S4164F	1.000	375	0%	324	28.1%	0	-	benign(0)	tolerated(0.77)	neutral(0.001)	superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141259433	141259433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.C2891	1.000	176	0%	101	31.7%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141771270	141771270	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.S745	0.873	322	0%	234	25.2%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141806735	141806735	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.G537*	1.000	462	0.4%	364	32.4%	0	-	-	-	-	superfamily_SSF63825
LRP1B	53353	genome.wustl.edu	37	2	141946009	141946009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.A332S	1.000	348	0%	298	29.9%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
ARHGAP15	55843	genome.wustl.edu	37	2	144461045	144461045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018460.3	+1	validated	p.P399H	1.000	190	0%	144	28.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ZEB2	9839	genome.wustl.edu	37	2	145147450	145147450	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.S1071	1.000	152	0%	61	31.1%	4	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZEB2	9839	genome.wustl.edu	37	2	145155993	145155993	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.R921*	0.990	272	0.4%	139	26.6%	2	0%	-	-	-	NULL
LYPD6	130574	genome.wustl.edu	37	2	150327309	150327309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194317.2	+1	provisional	p.R154H	0.632	476	0.2%	317	29.3%	4	75%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152230104	152230104	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	e5+1	1.000	232	0%	129	21.7%	0	-	-	-	-	-
RIF1	55183	genome.wustl.edu	37	2	152319926	152319926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.G1298W	0.003	243	0%	164	18.3%	9	22.2%	possibly_damaging(0.783)	deleterious(0.03)	deleterious(0.657)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152320436	152320436	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.L1468	0.004	286	0%	169	29.6%	8	62.5%	-	-	-	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152321342	152321342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.P1770T	0.000	343	0%	201	29.4%	3	33.3%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	superfamily_ARM repeat
RIF1	55183	genome.wustl.edu	37	2	152324577	152324577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018151.4	+1	reviewed	p.R2222W	0.965	213	0%	152	27.6%	26	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
NEB	4703	genome.wustl.edu	37	2	152410005	152410005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.K4845N	1.000	164	0.6%	127	26%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152411456	152411456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.L4772I	0.022	242	0%	153	28.1%	1	100%	benign(0.063)	tolerated(0.18)	neutral(0.060)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152427018	152427018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.A4003V	1.000	47	0%	43	23.3%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152473959	152473959	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.D3457	0.991	14	0%	12	58.3%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152484097	152484097	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.T3118	0.010	475	0%	288	30.2%	0	-	-	-	-	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152500512	152500512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.D2592E	1.000	595	0.2%	377	28.4%	0	-	benign(0.095)	tolerated(0.24)	neutral(0.044)	HMMPfam_Nebulin,HMMSmart_SM00227
FMNL2	114793	genome.wustl.edu	37	2	153473604	153473604	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052905.3	+1	reviewed	e13-1	1.000	221	0%	119	28.6%	0	-	-	-	-	-
FMNL2	114793	genome.wustl.edu	37	2	153504361	153504361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052905.3	+1	reviewed	p.R1074M	1.000	392	0.5%	282	25.5%	15	60%	unknown(0)	deleterious(0)	-	NULL
PRPF40A	55660	genome.wustl.edu	37	2	153526818	153526818	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017892.3	-1	validated	p.Y519*	0.998	88	0%	59	22%	74	6.7%	-	-	-	HMMSmart_SM00441,superfamily_FF domain
PRPF40A	55660	genome.wustl.edu	37	2	153535960	153535960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017892.3	-1	validated	p.K161N	1.000	68	0%	50	22%	37	81%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
ARL6IP6	151188	genome.wustl.edu	37	2	153616289	153616289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152522.4	+1	validated	p.G206S	1.000	175	0%	110	18.2%	35	48.5%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
GALNT13	114805	genome.wustl.edu	37	2	155099300	155099300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	p.R190C	1.000	97	0%	69	13%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
KCNJ3	3760	genome.wustl.edu	37	2	155555494	155555494	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002239.2	+1	reviewed	p.S69	1.000	126	0%	60	25%	0	-	-	-	-	HMMPfam_IRK,superfamily_SSF81324
NR4A2	4929	genome.wustl.edu	37	2	157186266	157186266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006186.3	-1	reviewed	p.D145N	1.000	56	0%	35	25.7%	16	37.5%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
ACVR1	90	genome.wustl.edu	37	2	158630689	158630689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.D185G	1.000	355	0%	228	26.3%	22	45.4%	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like
ACVR1	90	genome.wustl.edu	37	2	158637032	158637032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.G50C	1.000	268	0%	151	29.8%	21	42.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Activin_recp,superfamily_SSF57302
CCDC148	130940	genome.wustl.edu	37	2	159028674	159028674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138803.3	-1	validated	p.P576H	1.000	382	0%	310	29%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC148	130940	genome.wustl.edu	37	2	159165949	159165949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138803.3	-1	validated	p.A369V	1.000	196	0%	85	12.9%	2	0%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
PKP4	8502	genome.wustl.edu	37	2	159481642	159481642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.R286W	0.810	118	0%	71	26.8%	104	38.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
PKP4	8502	genome.wustl.edu	37	2	159488368	159488368	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.T419	0.986	147	0%	93	11.8%	106	28.3%	-	-	-	NULL
TANC1	85461	genome.wustl.edu	37	2	160080821	160080821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.G1253S	1.000	76	0%	35	34.3%	8	37.5%	probably_damaging(0.961)	tolerated(0.09)	deleterious(0.701)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BAZ2B	29994	genome.wustl.edu	37	2	160206219	160206219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.Q1621H	1.000	282	0%	194	30.9%	6	83.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MARCH7	64844	genome.wustl.edu	37	2	160609014	160609014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022826.2	+1	validated	p.C572Y	1.000	244	0%	151	30.5%	77	63.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RINGv,HMMPfam_zf-C3HC4,superfamily_SSF57850
TANK	10010	genome.wustl.edu	37	2	162091906	162091906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004180.2	+1	reviewed	p.G385	0.869	383	0.3%	204	10.8%	39	35.8%	-	-	-	NULL
DPP4	1803	genome.wustl.edu	37	2	162849855	162849855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001935.3	-1	reviewed	p.A747S	1.000	314	0%	215	28.8%	0	-	possibly_damaging(0.474)	tolerated(0.26)	neutral(0.191)	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
IFIH1	64135	genome.wustl.edu	37	2	163123734	163123734	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022168.2	-1	reviewed	p.C1018	0.977	236	0%	143	28%	10	20%	-	-	-	NULL
FIGN	55137	genome.wustl.edu	37	2	164468183	164468183	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018086.2	-1	validated	p.A53	1.000	554	0%	387	32.6%	2	50%	-	-	-	NULL
COBLL1	22837	genome.wustl.edu	37	2	165550911	165550911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014900.3	-1	validated	p.Q1035H	1.000	142	0%	90	28.9%	16	68.7%	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165950886	165950886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.A1512T	0.875	726	0.1%	521	26.7%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167141209	167141209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.S576	1.000	270	0%	137	26.3%	3	33.3%	-	-	-	NULL
SCN7A	6332	genome.wustl.edu	37	2	167301323	167301323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002976.2	-1	validated	p.E525D	1.000	65	0%	70	24.3%	0	-	benign(0.31)	tolerated(0.35)	neutral(0.117)	superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168099497	168099497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.G532V	0.061	153	0%	104	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168102483	168102483	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.W1527*	1.000	646	0%	480	23.1%	0	-	-	-	-	HMMPfam_Xin
XIRP2	129446	genome.wustl.edu	37	2	168107224	168107224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.N3108D	0.006	485	0.2%	388	26.3%	0	-	benign(0.006)	deleterious(0.05)	neutral(0.345)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168725604	168725604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020981.2	+1	reviewed	p.A19T	1.000	337	0%	185	18.9%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
B3GALT1	8708	genome.wustl.edu	37	2	168726104	168726104	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020981.2	+1	reviewed	p.D185	0.998	186	0%	97	38.1%	1	100%	-	-	-	HMMPfam_Galactosyl_T
STK39	27347	genome.wustl.edu	37	2	169023871	169023871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013233.2	-1	reviewed	p.T123I	1.000	292	0%	187	25.1%	10	30%	possibly_damaging(0.898)	tolerated(0.09)	deleterious(0.651)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
G6PC2	57818	genome.wustl.edu	37	2	169764226	169764226	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021176.2	+1	reviewed	p.S235	0.582	219	0%	116	27.6%	0	-	-	-	-	NULL
G6PC2	57818	genome.wustl.edu	37	2	169764488	169764488	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021176.2	+1	reviewed	p.L323M	0.030	406	0%	189	11.1%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
ABCB11	8647	genome.wustl.edu	37	2	169824973	169824973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003742.2	-1	reviewed	p.R680K	0.006	66	0%	66	28.8%	0	-	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
LRP2	4036	genome.wustl.edu	37	2	169997012	169997012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.M4384I	1.000	66	0%	43	30.2%	0	-	probably_damaging(0.996)	tolerated(0.34)	deleterious(0.485)	HMMSmart_EGF,superfamily_SSF57196
LRP2	4036	genome.wustl.edu	37	2	170044551	170044551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R3086H	0.996	281	0%	176	29%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170053496	170053496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R2875C	0.011	112	0%	67	17.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170083096	170083096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.D1744N	1.000	172	0%	130	33.1%	0	-	possibly_damaging(0.772)	tolerated(0.12)	deleterious(0.547)	NULL
LRP2	4036	genome.wustl.edu	37	2	170092372	170092372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.R1633I	0.016	150	0%	93	20.4%	0	-	probably_damaging(0.955)	tolerated(0.35)	neutral(0.419)	HMMPfam_Ldl_recept_b,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170488416	170488416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.N301S	0.993	300	0%	214	33.6%	27	3.7%	benign(0.271)	tolerated(0.21)	neutral(0.073)	NULL
PPIG	9360	genome.wustl.edu	37	2	170489707	170489707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.R323*	1.000	243	0%	221	23.5%	35	2.8%	-	-	-	NULL
METTL5	29081	genome.wustl.edu	37	2	170681093	170681093	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014168.2	-1	provisional	p.R5	0.998	100	0%	61	26.2%	82	53.6%	-	-	-	superfamily_SSF53335
MYO3B	140469	genome.wustl.edu	37	2	171238534	171238534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.R327M	1.000	232	0%	181	14.9%	3	0%	possibly_damaging(0.867)	tolerated(0.11)	deleterious(0.608)	superfamily_Protein kinase-like (PK-like),superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO3B	140469	genome.wustl.edu	37	2	171300527	171300527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.P901T	1.000	196	0%	118	26.3%	7	14.2%	benign(0)	tolerated(1)	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GORASP2	26003	genome.wustl.edu	37	2	171811207	171811207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015530.3	+1	reviewed	p.R205H	1.000	213	0%	132	19.7%	100	45%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_GRASP55_65
TLK1	9874	genome.wustl.edu	37	2	171906621	171906621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012290.4	-1	validated	p.R266*	1.000	116	0%	92	10.9%	28	0%	-	-	-	NULL
DYNC1I2	1781	genome.wustl.edu	37	2	172571877	172571877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001378.1	+1	provisional	p.Q145H	1.000	37	0%	18	27.8%	54	35.1%	benign(0.009)	tolerated(0.19)	neutral(0.050)	NULL
HAT1	8520	genome.wustl.edu	37	2	172841133	172841133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003642.3	+1	reviewed	p.D287E	1.000	169	0%	84	34.5%	43	20.9%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Acyl_CoA_acyltransferase
HAT1	8520	genome.wustl.edu	37	2	172841194	172841194	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003642.3	+1	reviewed	p.G308*	1.000	164	0.6%	105	28.6%	54	18.5%	-	-	-	superfamily_Acyl_CoA_acyltransferase
RAPGEF4	11069	genome.wustl.edu	37	2	173879244	173879244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.L571I	1.000	196	0%	110	28.2%	0	-	possibly_damaging(0.581)	tolerated(0.5)	neutral(0.210)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
RAPGEF4	11069	genome.wustl.edu	37	2	173881137	173881137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.P624S	0.976	190	0.5%	92	30.4%	2	0%	benign(0.052)	tolerated(0.75)	neutral(0.005)	HMMSmart_SM00229,superfamily_Ras GEF
ZAK	51776	genome.wustl.edu	37	2	174081932	174081932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016653.2	+1	reviewed	p.R314H	0.998	127	0%	73	17.8%	18	50%	benign(0.091)	deleterious(0.03)	neutral(0.371)	NULL
ZAK	51776	genome.wustl.edu	37	2	174086219	174086219	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133646.2	+1	reviewed	p.D443	0.676	111	0%	69	27.5%	9	22.2%	-	-	-	NULL
ZAK	51776	genome.wustl.edu	37	2	174130854	174130854	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016653.2	+1	reviewed	p.S593	1.000	127	0%	68	26.5%	12	41.6%	-	-	-	NULL
SCRN3	79634	genome.wustl.edu	37	2	175265719	175265719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024583.3	+1	validated	p.L115I	1.000	144	0%	70	25.7%	14	35.7%	possibly_damaging(0.869)	tolerated(0.06)	deleterious(0.659)	NULL
GPR155	151556	genome.wustl.edu	37	2	175311371	175311371	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.L661	1.000	191	0%	114	28.9%	1	0%	-	-	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175331283	175331283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.L419F	1.000	343	0.3%	183	30.1%	0	-	benign(0.012)	tolerated(0.47)	neutral(0.011)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175436658	175436658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077269.1	-1	reviewed	p.P292H	0.999	36	0%	19	26.3%	14	0%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
WIPF1	7456	genome.wustl.edu	37	2	175446054	175446054	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077269.1	-1	reviewed	p.S55	1.000	799	0.1%	457	16.6%	5	0%	-	-	-	NULL
CHN1	1123	genome.wustl.edu	37	2	175673636	175673636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001822.4	-1	reviewed	p.A367T	1.000	1209	0.2%	741	13.1%	11	0%	benign(0.006)	tolerated(0.24)	neutral(0.037)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
KIAA1715	80856	genome.wustl.edu	37	2	176829296	176829296	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030650.1	-1	validated	p.E127*	1.000	224	0%	183	30.1%	6	16.6%	-	-	-	NULL
HOXD9	3235	genome.wustl.edu	37	2	176988304	176988304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014213.3	+1	reviewed	p.L270I	1.000	37	0%	30	13.3%	4	0%	possibly_damaging(0.696)	tolerated(0.32)	neutral(0.274)	HMMPfam_Hox9_act
HOXD4	3233	genome.wustl.edu	37	2	177017644	177017644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014621.2	+1	reviewed	p.H248N	1.000	218	0%	84	16.7%	1	0%	benign(0.022)	tolerated(0.79)	neutral(0.002)	NULL
HOXD3	3232	genome.wustl.edu	37	2	177036312	177036312	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.S203	0.976	72	0%	21	38.1%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
MTX2	10651	genome.wustl.edu	37	2	177194078	177194078	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006554.4	+1	reviewed	p.I156S	1.000	174	0%	154	34.4%	72	34.7%	benign(0.196)	deleterious(0)	neutral(0.463)	superfamily_GST_C_like,HMMPfam_Tom37
LOC100128904	100128904	genome.wustl.edu	37	2	178483055	178483055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722332.2	+1	model	p.A44T	0.493	192	0%	78	38.5%	7	28.5%	-	-	-	NULL
PDE11A	50940	genome.wustl.edu	37	2	178494177	178494178	+	In_Frame_Ins	INS	-	-	GAT	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016953.3	-1	reviewed	p.922in_frame_insS	0.003:0.040	-	-	-	-	-	-	-	-	-	NULL
OSBPL6	114880	genome.wustl.edu	37	2	179214053	179214053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.P368T	1.000	648	0%	369	24.7%	1	0%	benign(0.054)	deleterious(0.03)	neutral(0.368)	NULL
OSBPL6	114880	genome.wustl.edu	37	2	179253861	179253861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145739.1	+1	reviewed	p.C765F	1.000	201	0%	125	33.6%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Oxysterol_BP
DFNB59	494513	genome.wustl.edu	37	2	179325879	179325879	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042702.3	+1	reviewed	p.G313*	1.000	313	0%	193	30.1%	1	100%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179395935	179395935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R32566Q	1.000	632	0%	443	28%	0	-	benign(0.003)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179396827	179396827	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R32269*	1.000	179	0%	123	30.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179402568	179402568	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.A30554V	1.000	91	0%	80	12.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179407409	179407409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.T29821I	1.000	635	0%	495	28.1%	0	-	benign(0.109)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179411753	179411753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P28930H	1.000	496	0%	377	25.7%	1	100%	probably_damaging(0.999)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179417804	179417804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Q27371H	0.007	134	0%	97	25.8%	0	-	probably_damaging(0.992)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179417989	179417989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.L27310I	1.000	361	0%	267	32.2%	0	-	probably_damaging(0.982)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179424316	179424316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P26278H	1.000	423	0.2%	333	26.4%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179426832	179426832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S25441L	0.999	117	0.9%	89	28.1%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179429140	179429140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R24670I	1.000	187	0%	127	28.3%	0	-	probably_damaging(0.976)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179430241	179430241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A24303V	1.000	353	0%	289	28.7%	0	-	possibly_damaging(0.866)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179431654	179431654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.S23832Y	1.000	266	0%	212	12.3%	0	-	possibly_damaging(0.922)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179433118	179433118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P23344H	1.000	129	0%	101	27.7%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179436977	179436977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V22058I	1.000	108	0%	64	31.2%	0	-	benign(0.088)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179451375	179451375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Y18848C	1.000	306	0%	251	29.1%	0	-	probably_damaging(0.989)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179455159	179455159	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.P17863H	0.996	231	0.4%	211	24.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179456586	179456586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V17417A	0.123	134	0%	109	15.6%	0	-	benign(0.099)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179457611	179457611	+	Silent	SNP	G	G	T	rs180965342	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.P17177Q	0.978	346	0%	288	31.6%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179481260	179481260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P13518	0.116	308	0%	273	27.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179486228	179486228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R12540Q	0.999	176	0%	145	29.7%	0	-	possibly_damaging(0.763)	-	-	HMMSmart_SM00408,HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179490113	179490113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R12244H	1.000	371	0.3%	331	29.6%	0	-	possibly_damaging(0.535)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179497050	179497050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.N11956T	1.000	51	0%	37	16.2%	0	-	benign(0.29)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179504790	179504790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P11023T	1.000	171	0%	180	22.2%	0	-	unknown(0)	tolerated(0.6)	-	NULL
TTN	7273	genome.wustl.edu	37	2	179534099	179534099	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392423	-1	known	e5+1	0.992	61	0%	57	35.1%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179540663	179540663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A10207T	1.000	58	0%	39	25.6%	0	-	unknown(0)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179582697	179582697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.A7102T	0.560	706	0%	487	11.9%	0	-	unknown(0)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179583268	179583268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V6945F	0.927	150	0%	106	25.5%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179588301	179588301	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E5932*	1.000	101	0%	89	30.3%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179613995	179613995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.T4378A	0.209	292	0%	242	29.8%	0	-	benign(0.099)	deleterious(0)	neutral(0.452)	NULL
TTN	7273	genome.wustl.edu	37	2	179632741	179632741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.R3102I	1.000	270	0.4%	179	28.5%	0	-	possibly_damaging(0.539)	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179643789	179643789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.D1340	0.981	129	0%	93	23.7%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179647025	179647025	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.S1098	0.056	123	0%	80	28.7%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
CCDC141	285025	genome.wustl.edu	37	2	179701844	179701844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.A793T	0.090	191	0%	146	32.9%	0	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
SESTD1	91404	genome.wustl.edu	37	2	180008500	180008500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178123.4	-1	validated	p.R223H	1.000	163	0%	118	32.2%	9	55.5%	benign(0.36)	deleterious(0)	deleterious(0.559)	NULL
ZNF385B	151126	genome.wustl.edu	37	2	180383279	180383279	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152520.4	-1	validated	p.V161	1.000	197	0%	173	11%	2	0%	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
UBE2E3	10477	genome.wustl.edu	37	2	181927672	181927672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000410062	+1	known	p.K227E	1.000	89	0%	46	23.9%	210	42.3%	-	-	-	NULL
ITGA4	3676	genome.wustl.edu	37	2	182386944	182386944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000885.4	+1	reviewed	p.A650D	1.000	305	0%	232	33.6%	2	0%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
SSFA2	6744	genome.wustl.edu	37	2	182763821	182763821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130445.1	+1	validated	p.S162N	1.000	212	0%	150	21.3%	15	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PPP1R1C	151242	genome.wustl.edu	37	2	182928487	182928487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080545.1	+1	provisional	p.K70	1.000	387	0%	253	14.2%	0	-	-	-	-	HMMPfam_DARPP-32
PDE1A	5136	genome.wustl.edu	37	2	183050650	183050650	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005019.3	-1	validated	p.N511	1.000	222	0%	175	35.4%	1	0%	-	-	-	superfamily_SSF109604
NCKAP1	10787	genome.wustl.edu	37	2	183800032	183800032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205842.1	-1	validated	p.A929T	1.000	146	0%	109	27.5%	118	42.3%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_Nckap1
DUSP19	142679	genome.wustl.edu	37	2	183951787	183951787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080876.3	+1	validated	p.V98A	1.000	275	0%	256	23.8%	1	0%	possibly_damaging(0.628)	deleterious(0)	deleterious(0.663)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
NUP35	129401	genome.wustl.edu	37	2	184016286	184016286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138285.3	+1	reviewed	p.L150I	0.990	319	0%	197	29.4%	10	70%	benign(0.277)	tolerated(0.16)	neutral(0.089)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186672461	186672461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.C6143Y	0.892	253	0%	248	27%	0	-	possibly_damaging(0.661)	tolerated(0.1)	deleterious(0.520)	NULL
FSIP2	401024	genome.wustl.edu	37	2	186678521	186678521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424728	+1	known	p.P6693S	0.007	180	0%	184	31%	0	-	benign(0.05)	tolerated(0.13)	neutral(0.256)	NULL
CALCRL	10203	genome.wustl.edu	37	2	188211016	188211016	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005795.4	-1	validated	p.S427	0.859	102	0%	69	18.8%	2	0%	-	-	-	NULL
TFPI	7035	genome.wustl.edu	37	2	188361802	188361802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006287.4	-1	reviewed	p.T42M	0.000	175	0%	129	30.2%	3	0%	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	NULL
COL5A2	1290	genome.wustl.edu	37	2	189923574	189923574	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	e32+1	1.000	103	0%	76	23.7%	0	-	-	-	-	-
COL5A2	1290	genome.wustl.edu	37	2	189927992	189927992	+	Missense_Mutation	SNP	G	G	A	rs145169816	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.A592V	1.000	173	0%	108	28.7%	10	10%	unknown(0)	-	-	HMMPfam_Collagen
COL5A2	1290	genome.wustl.edu	37	2	189940157	189940157	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.R356*	1.000	176	0.6%	127	32.3%	12	0%	-	-	-	HMMPfam_Collagen
OSGEPL1	64172	genome.wustl.edu	37	2	190626232	190626232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022353.2	-1	validated	p.S45R	1.000	183	0%	110	28.2%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Actin-like ATPase domain
PMS1	5378	genome.wustl.edu	37	2	190732574	190732574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000534.4	+1	reviewed	p.D798Y	0.184	198	0%	163	33.7%	11	45.4%	benign(0.154)	deleterious(0.02)	neutral(0.397)	NULL
MSTN	2660	genome.wustl.edu	37	2	190922197	190922197	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005259.2	-1	reviewed	p.K305	1.000	238	0%	161	35.4%	0	-	-	-	-	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines
MSTN	2660	genome.wustl.edu	37	2	190925015	190925015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005259.2	-1	reviewed	p.L174M	1.000	332	0%	233	29.2%	2	0%	benign(0.247)	tolerated(0.24)	neutral(0.062)	HMMPfam_TGFb_propeptide
HIBCH	26275	genome.wustl.edu	37	2	191125898	191125898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014362.3	-1	reviewed	p.M167I	1.000	413	0%	292	29.5%	42	30.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ECH,superfamily_ClpP/crotonase
HIBCH	26275	genome.wustl.edu	37	2	191159289	191159289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014362.3	-1	reviewed	p.A96V	1.000	195	0%	149	27.5%	47	55.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_ECH,superfamily_ClpP/crotonase
MFSD6	54842	genome.wustl.edu	37	2	191301135	191301135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017694.3	+1	validated	p.R127H	1.000	333	0%	200	31%	18	27.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
GLS	2744	genome.wustl.edu	37	2	191760335	191760335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014905.3	+1	validated	p.L163	1.000	229	0%	133	26.3%	12	0%	-	-	-	NULL
GLS	2744	genome.wustl.edu	37	2	191765382	191765382	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014905.3	+1	validated	p.E233A	0.996	130	0%	74	23%	27	14.8%	benign(0.004)	tolerated(0.12)	neutral(0.261)	superfamily_beta-lactamase/transpeptidase-like
GLS	2744	genome.wustl.edu	37	2	191792194	191792194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014905.3	+1	validated	p.Q471*	1.000	205	0%	139	10.8%	14	14.2%	-	-	-	superfamily_beta-lactamase/transpeptidase-like,HMMPfam_Glutaminase
MYO1B	4430	genome.wustl.edu	37	2	192252126	192252126	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.S577	0.003	353	0%	187	25.7%	28	50%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1B	4430	genome.wustl.edu	37	2	192280925	192280925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.L1082I	1.000	230	0%	151	26.5%	61	40.9%	benign(0.177)	tolerated(0.21)	neutral(0.060)	HMMPfam_Myosin_TH1
SLC39A10	57181	genome.wustl.edu	37	2	196545296	196545296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.R177H	0.088	364	0%	209	26.3%	9	100%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196545464	196545464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.R233M	0.995	288	0%	206	27.7%	14	0%	possibly_damaging(0.509)	deleterious(0.02)	deleterious(0.553)	NULL
SLC39A10	57181	genome.wustl.edu	37	2	196578267	196578267	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.K562	1.000	279	0%	190	30%	16	12.5%	-	-	-	HMMPfam_Zip
SLC39A10	57181	genome.wustl.edu	37	2	196581657	196581657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127257.1	+1	validated	p.G665*	1.000	394	0.3%	215	26.5%	20	15%	-	-	-	HMMPfam_Zip
DNAH7	56171	genome.wustl.edu	37	2	196689150	196689150	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.G3040	0.277	236	0%	190	10.5%	0	-	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196752982	196752982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.K1802N	1.000	87	0%	45	33.3%	0	-	possibly_damaging(0.513)	deleterious(0)	deleterious(0.617)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196922795	196922795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.L21I	0.958	404	0.2%	265	12.1%	1	0%	benign(0.085)	deleterious(0)	neutral(0.451)	NULL
HECW2	57520	genome.wustl.edu	37	2	197092941	197092941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.L1268M	1.000	284	0%	202	29.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HECW2	57520	genome.wustl.edu	37	2	197135951	197135951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.R1101C	1.000	135	0%	87	27.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HECW2	57520	genome.wustl.edu	37	2	197183614	197183614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.R667Q	0.352	100	0%	36	22.2%	0	-	possibly_damaging(0.91)	tolerated(0.12)	deleterious(0.623)	NULL
HECW2	57520	genome.wustl.edu	37	2	197194331	197194331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.H180R	0.999	458	0%	305	28.2%	0	-	possibly_damaging(0.564)	tolerated(0.3)	neutral(0.221)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197634742	197634742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.R761H	0.997	171	0%	97	30.9%	22	77.2%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	superfamily_TPR-like
GTF3C3	9330	genome.wustl.edu	37	2	197636476	197636476	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.A752	0.677	146	0%	94	30.9%	19	78.9%	-	-	-	superfamily_TPR-like
GTF3C3	9330	genome.wustl.edu	37	2	197637710	197637710	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.E667*	1.000	330	0%	229	28.4%	13	15.3%	-	-	-	superfamily_TPR-like
GTF3C3	9330	genome.wustl.edu	37	2	197654777	197654777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.P185S	1.000	233	0%	159	17%	9	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00028,superfamily_Protein prenylyltransferase
GTF3C3	9330	genome.wustl.edu	37	2	197657782	197657782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.E103D	0.968	150	0%	107	31.8%	8	87.5%	possibly_damaging(0.791)	tolerated(0.41)	neutral(0.311)	NULL
ANKRD44	91526	genome.wustl.edu	37	2	197943493	197943493	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153697.1	-1	provisional	p.R503	1.000	140	0%	96	33.3%	0	-	-	-	-	HMMPfam_Ank,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197948125	197948125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153697.1	-1	provisional	p.L450	0.920	303	0%	182	38.5%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD44	91526	genome.wustl.edu	37	2	197954691	197954691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153697.1	-1	provisional	p.R364I	1.000	254	0%	147	34.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ank,HMMSmart_ANK
SF3B1	23451	genome.wustl.edu	37	2	198268383	198268383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012433.2	-1	reviewed	p.R549C	1.000	135	0%	89	25.8%	110	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HSPD1	3329	genome.wustl.edu	37	2	198353833	198353833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002156.4	-1	reviewed	p.R370C	1.000	186	0%	114	31.6%	525	35%	possibly_damaging(0.867)	deleterious(0.02)	deleterious(0.720)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029
MARS2	92935	genome.wustl.edu	37	2	198570554	198570554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138395.2	+1	validated	p.R142L	1.000	50	0%	34	41.2%	7	28.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_tRNA-synt_1g,superfamily_SSF52374
MARS2	92935	genome.wustl.edu	37	2	198571612	198571612	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138395.2	+1	validated	p.L495	0.981	136	0%	85	25.9%	11	45.4%	-	-	-	superfamily_tRNAsyn_1a_bind
PLCL1	5334	genome.wustl.edu	37	2	198948591	198948591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.A19V	0.997	225	0%	162	34.6%	0	-	possibly_damaging(0.797)	tolerated(0.28)	neutral(0.331)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SATB2	23314	genome.wustl.edu	37	2	200136985	200136985	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015265.3	-1	reviewed	p.E717	1.000	336	0%	234	25.2%	5	40%	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201399720	201399720	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.N45	0.954	360	0%	261	24.5%	5	40%	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201399826	201399826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.L81I	0.473	845	0%	572	29.2%	3	66.6%	possibly_damaging(0.621)	tolerated(0.34)	neutral(0.239)	HMMPfam_Shugoshin_N
SGOL2	151246	genome.wustl.edu	37	2	201438037	201438037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.S990P	0.261	343	0%	259	29.7%	25	56%	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	NULL
AOX1	316	genome.wustl.edu	37	2	201499567	201499567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001159.3	+1	reviewed	p.L759I	1.000	141	0%	89	19.1%	1	0%	benign(0.309)	tolerated(0.24)	neutral(0.134)	HMMPfam_Ald_Xan_dh_C2,superfamily_Molybdenum cofactor-binding domain
PPIL3	53938	genome.wustl.edu	37	2	201741681	201741681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032472.3	-1	reviewed	p.K111I	1.000	204	0%	103	25.2%	36	22.2%	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
NIF3L1	60491	genome.wustl.edu	37	2	201757979	201757979	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136039.2	+1	validated	p.T149	0.735	473	0%	299	27.4%	22	59%	-	-	-	HMMPfam_NIF3,superfamily_NIF3 (NGG1p interacting factor 3)-like
CFLAR	8837	genome.wustl.edu	37	2	202027755	202027755	+	Missense_Mutation	SNP	G	G	T	rs112626120		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340870	+1	known	p.K447N	0.000	37	0%	25	36%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_CASc
CASP10	843	genome.wustl.edu	37	2	202050747	202050747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032977.3	+1	reviewed	p.L83I	1.000	133	0%	70	21.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_DED,HMMSmart_DED,superfamily_DEATH_like
ALS2CR11	151254	genome.wustl.edu	37	2	202466516	202466516	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152525.5	-1	validated	p.N154	0.000	152	0.7%	103	36.9%	0	-	-	-	-	NULL
TMEM237	65062	genome.wustl.edu	37	2	202494502	202494502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044385.1	-1	validated	p.K209N	1.000	257	0%	141	29.8%	29	55.1%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
MPP4	58538	genome.wustl.edu	37	2	202545618	202545618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033066.2	-1	reviewed	p.K291I	1.000	39	0%	35	17.1%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
ALS2	57679	genome.wustl.edu	37	2	202571591	202571591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.L1520M	0.998	363	0%	248	24.6%	5	0%	probably_damaging(0.996)	tolerated(0.46)	deleterious(0.474)	superfamily_VPS9 domain (Pfam 02204)
ALS2	57679	genome.wustl.edu	37	2	202591543	202591543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.R1009I	1.000	133	0.8%	79	19%	3	33.3%	benign(0.03)	tolerated(0.21)	neutral(0.045)	NULL
ALS2	57679	genome.wustl.edu	37	2	202609041	202609041	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020919.3	-1	reviewed	p.R704*	1.000	313	0%	168	31.5%	1	0%	-	-	-	superfamily_DBL homology domain (DH-domain)
CDK15	65061	genome.wustl.edu	37	2	202672664	202672664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139158.1	+1	provisional	p.K68N	1.000	244	0%	116	12.9%	0	-	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
CDK15	65061	genome.wustl.edu	37	2	202700393	202700393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139158.1	+1	provisional	p.S202N	1.000	151	0%	93	15.1%	0	-	possibly_damaging(0.914)	deleterious(0.03)	deleterious(0.730)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NOP58	51602	genome.wustl.edu	37	2	203162141	203162141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015934.3	+1	provisional	p.R371C	1.000	283	0%	205	31.7%	106	38.6%	unknown(0)	-	-	HMMPfam_Nop,superfamily_SSF89124
BMPR2	659	genome.wustl.edu	37	2	203417492	203417492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001204.6	+1	reviewed	p.E489D	1.000	202	0%	143	10.5%	12	16.6%	possibly_damaging(0.849)	tolerated(0.4)	neutral(0.342)	superfamily_Kinase_like,HMMPfam_Pkinase
NBEAL1	65065	genome.wustl.edu	37	2	204000891	204000891	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114132.1	+1	validated	p.S1406	0.533	139	0%	105	25.7%	1	100%	-	-	-	NULL
CYP20A1	57404	genome.wustl.edu	37	2	204143340	204143340	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177538.2	+1	reviewed	p.R242*	1.000	126	0%	87	21.8%	9	11.1%	-	-	-	superfamily_Cytochrome_P450
RAPH1	65059	genome.wustl.edu	37	2	204309655	204309655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213589.1	-1	validated	p.S571I	1.000	531	0%	364	26.9%	8	87.5%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
RAPH1	65059	genome.wustl.edu	37	2	204354647	204354647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213589.1	-1	validated	p.G131D	1.000	621	0%	357	26.3%	6	33.3%	benign(0.116)	tolerated(0.14)	neutral(0.259)	NULL
CD28	940	genome.wustl.edu	37	2	204591686	204591686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006139.2	+1	validated	p.S128I	1.000	242	0%	146	32.9%	3	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_Immunoglobulin
CTLA4	1493	genome.wustl.edu	37	2	204735360	204735360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005214.3	+1	reviewed	p.A54V	1.000	340	0%	192	28.1%	1	0%	benign(0.301)	tolerated(0.39)	neutral(0.109)	HMMSmart_IGv,superfamily_SSF48726
ICOS	29851	genome.wustl.edu	37	2	204820447	204820447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012092.3	+1	reviewed	p.Q49H	0.298	395	0%	328	29.6%	0	-	benign(0.305)	deleterious(0.05)	neutral(0.441)	NULL
NRP2	8828	genome.wustl.edu	37	2	206659526	206659526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201266.1	+1	reviewed	p.S847Y	0.022	162	0%	107	11.2%	5	0%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
NDUFS1	4719	genome.wustl.edu	37	2	206988970	206988970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005006.5	-1	reviewed	p.A708V	1.000	206	0%	129	29.5%	91	40.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1982
ZDBF2	57683	genome.wustl.edu	37	2	207174441	207174441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020923.1	+1	validated	p.S1730L	0.000	190	0%	100	17%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
ADAM23	8745	genome.wustl.edu	37	2	207395659	207395659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003812.2	+1	reviewed	p.P187Q	0.997	82	0%	52	21.2%	18	50%	benign(0.002)	tolerated(0.7)	neutral(0.002)	HMMPfam_Pep_M12B_propep
LOC200726	200726	genome.wustl.edu	37	2	207509176	207509176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102659.1	+1	predicted	p.F72L	1.000	92	0%	49	24.5%	0	-	-	-	-	NULL
DYTN	391475	genome.wustl.edu	37	2	207570586	207570586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.G103D	0.014	94	0%	47	36.2%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMPfam_efhand_1,superfamily_SSF47473
MDH1B	130752	genome.wustl.edu	37	2	207619866	207619866	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039845.1	-1	validated	p.T259	0.888	289	0.3%	171	10.5%	2	0%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
CREB1	1385	genome.wustl.edu	37	2	208420438	208420438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134442.3	+1	reviewed	p.V27I	1.000	207	0%	130	25.4%	16	31.2%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209169029	209169029	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.D485	0.976	494	0%	393	28.5%	0	-	-	-	-	"superfamily_""Winged helix"" DNA-binding domain"
PIKFYVE	200576	genome.wustl.edu	37	2	209189668	209189668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.G789C	1.000	243	0%	160	30%	1	100%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_Cpn60_TCP1,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
PIKFYVE	200576	genome.wustl.edu	37	2	209200605	209200605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.D1449Y	1.000	179	0%	133	27.8%	5	40%	possibly_damaging(0.64)	deleterious(0.04)	deleterious(0.573)	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209204148	209204148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.R1560H	1.000	278	0%	177	24.9%	7	57.1%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
PTH2R	5746	genome.wustl.edu	37	2	209353765	209353765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005048.2	+1	reviewed	p.V369I	1.000	198	0%	122	13.1%	3	0%	benign(0.006)	tolerated(1)	-	HMMPfam_7tm_2,superfamily_SSF81321
RPE	6120	genome.wustl.edu	37	2	210884424	210884424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199229.1	+1	provisional	p.A199D	1.000	126	0%	65	29.2%	36	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ribul_P_3_epim,superfamily_Ribulose-phoshate binding barrel
KANSL1L	151050	genome.wustl.edu	37	2	210892029	210892029	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152519.2	-1	validated	p.G814	0.714	305	0%	135	23.7%	8	25%	-	-	-	NULL
KANSL1L	151050	genome.wustl.edu	37	2	211018737	211018737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152519.2	-1	validated	p.K190N	0.919	378	0%	215	12.1%	8	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CPS1	1373	genome.wustl.edu	37	2	211473148	211473148	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122633.1	+1	reviewed	p.N758	0.560	449	0%	399	24.6%	1	0%	-	-	-	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like
IKZF2	22807	genome.wustl.edu	37	2	213878537	213878537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016260.2	-1	reviewed	p.S278R	1.000	584	0%	458	28.2%	0	-	possibly_damaging(0.868)	tolerated(0.26)	neutral(0.371)	NULL
IKZF2	22807	genome.wustl.edu	37	2	213921617	213921617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016260.2	-1	reviewed	p.V116I	1.000	196	0%	134	14.2%	1	0%	benign(0.011)	tolerated(0.66)	neutral(0.003)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
SPAG16	79582	genome.wustl.edu	37	2	214162061	214162061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024532.3	+1	validated	p.A87T	0.028	387	0%	220	31.4%	3	0%	benign(0.021)	tolerated(0.65)	neutral(0.004)	superfamily_WD40 repeat-like
BARD1	580	genome.wustl.edu	37	2	215646108	215646108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000465.2	-1	reviewed	p.Q164*	0.998	321	0.6%	287	31.4%	4	75%	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215802258	215802258	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.L2506	0.013	162	0%	116	21.6%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA12	26154	genome.wustl.edu	37	2	215854295	215854295	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.R1225	0.330	182	0%	117	20.5%	0	-	-	-	-	NULL
ATIC	471	genome.wustl.edu	37	2	216198102	216198102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004044.6	+1	reviewed	p.D282Y	1.000	295	0.3%	206	12.6%	113	27.4%	benign(0.31)	deleterious(0.02)	deleterious(0.480)	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly
FN1	2335	genome.wustl.edu	37	2	216230271	216230271	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.C2367	1.000	367	0%	231	31.6%	222	0.4%	-	-	-	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,superfamily_Fibronectin type I module
FN1	2335	genome.wustl.edu	37	2	216232615	216232615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.G2330V	1.000	105	0%	62	32.3%	148	0%	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_fn1,HMMSmart_SM00058,PatternScan_FN1_1,superfamily_Fibronectin type I module
FN1	2335	genome.wustl.edu	37	2	216289985	216289985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.R290C	0.610	177	0%	143	32.2%	30	3.3%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
PECR	55825	genome.wustl.edu	37	2	216930170	216930170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018441.5	-1	validated	p.T97A	0.038	216	0%	132	34.1%	1	100%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
MARCH4	57574	genome.wustl.edu	37	2	217142395	217142395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020814.2	-1	validated	p.G289C	1.000	591	0.2%	307	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MARCH4	57574	genome.wustl.edu	37	2	217234573	217234573	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020814.2	-1	validated	p.D137	0.998	61	0%	34	35.3%	0	-	-	-	-	NULL
TNS1	7145	genome.wustl.edu	37	2	218712289	218712289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.R859Q	1.000	164	0%	108	11.1%	7	14.2%	probably_damaging(0.957)	deleterious(0.05)	deleterious(0.746)	NULL
TNS1	7145	genome.wustl.edu	37	2	218712759	218712759	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.Q702	1.000	72	0%	32	31.2%	11	0%	-	-	-	NULL
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.Q659in_frame_del	1.000:1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
RUFY4	285180	genome.wustl.edu	37	2	218947919	218947919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198483.3	+1	validated	p.E308G	0.964	178	0%	114	16.7%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	superfamily_FYVE/PHD zinc finger
CXCR1	3577	genome.wustl.edu	37	2	219029293	219029293	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000634.2	-1	reviewed	p.P214	0.000	246	0.4%	165	30.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AAMP	14	genome.wustl.edu	37	2	219130399	219130399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001087.3	-1	reviewed	p.G296C	1.000	73	0%	47	25.5%	157	50.3%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMSmart_WD40,superfamily_WD40_like
CTDSP1	58190	genome.wustl.edu	37	2	219269109	219269109	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428361	+1	known	p.T250M	1.000	88	0%	29	17.2%	107	41.1%	-	-	-	HMMPfam_NIF,superfamily_HAD-like
ZNF142	7701	genome.wustl.edu	37	2	219507746	219507746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.R1165S	0.065	31	0%	17	23.5%	9	33.3%	benign(0.003)	tolerated(0.93)	-	NULL
ZNF142	7701	genome.wustl.edu	37	2	219508604	219508604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.R879C	0.999	145	0%	63	33.3%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF142	7701	genome.wustl.edu	37	2	219509363	219509363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.D626Y	0.415	61	0%	31	19.4%	8	50%	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	NULL
STK36	27148	genome.wustl.edu	37	2	219563960	219563960	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431040	+1	known	p.A424V	0.997	107	0%	65	36.9%	35	48.5%	-	-	-	superfamily_ARM repeat
TTLL4	9654	genome.wustl.edu	37	2	219609835	219609835	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014640.4	+1	validated	p.S555	0.290	469	0.2%	238	25.6%	8	37.5%	-	-	-	NULL
TTLL4	9654	genome.wustl.edu	37	2	219614018	219614018	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436668	+1	known	p.T26A	0.669	316	0%	177	32.2%	16	56.2%	-	-	-	HMMPfam_TTL
CCDC108	255101	genome.wustl.edu	37	2	219884415	219884415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.L1096M	0.842	16	0%	15	33.3%	1	100%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219886632	219886632	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.A1000	1.000	76	1.3%	41	26.8%	2	100%	-	-	-	NULL
CCDC108	255101	genome.wustl.edu	37	2	219894235	219894235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.P514S	0.259	64	0%	28	25%	0	-	benign(0.287)	tolerated(0.36)	neutral(0.108)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219903171	219903171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.A95T	0.508	99	0%	51	29.4%	2	100%	benign(0.035)	deleterious(0)	neutral(0.447)	NULL
ATG9A	79065	genome.wustl.edu	37	2	220087592	220087592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077198.1	-1	validated	p.E541D	0.999	74	0%	39	12.8%	70	17.1%	benign(0.202)	deleterious(0.04)	neutral(0.368)	NULL
ANKZF1	55139	genome.wustl.edu	37	2	220100508	220100508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042410.1	+1	validated	p.R628W	0.846	132	0%	77	33.8%	59	47.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PTPRN	5798	genome.wustl.edu	37	2	220166335	220166335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002846.2	-1	reviewed	p.L367	1.000	241	0%	102	22.5%	0	-	-	-	-	NULL
SPEG	10290	genome.wustl.edu	37	2	220353258	220353258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.V2633M	0.945	52	0%	25	36%	0	-	possibly_damaging(0.922)	tolerated(0.07)	deleterious(0.691)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SPEG	10290	genome.wustl.edu	37	2	220354242	220354242	+	Silent	SNP	G	G	A	rs148685205	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.S2834	0.028	78	0%	36	44.4%	0	-	-	-	-	NULL
SPEG	10290	genome.wustl.edu	37	2	220355312	220355312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.L3035I	1.000	34	0%	16	31.2%	0	-	possibly_damaging(0.653)	tolerated(0.06)	deleterious(0.552)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPEG	10290	genome.wustl.edu	37	2	220356834	220356834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.L3155F	1.000	40	0%	10	40%	2	0%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CHPF	79586	genome.wustl.edu	37	2	220404580	220404580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024536.5	-1	validated	p.T618M	0.998	234	0%	104	13.5%	172	23.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CHGN
TMEM198	130612	genome.wustl.edu	37	2	220413912	220413912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005209.1	+1	provisional	p.R261W	1.000	93	0%	55	20%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
OBSL1	23363	genome.wustl.edu	37	2	220421015	220421015	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015311.2	-1	reviewed	e14-1	1.000	93	0%	43	25.6%	0	-	-	-	-	-
OBSL1	23363	genome.wustl.edu	37	2	220422065	220422065	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015311.2	-1	reviewed	p.E1356*	1.000	6	0.000	6	0.667	1	0%	-	-	-	superfamily_SSF48726
OBSL1	23363	genome.wustl.edu	37	2	220428294	220428294	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015311.2	-1	reviewed	p.T821	0.643	125	0%	49	26.5%	3	0%	-	-	-	HMMSmart_IG,superfamily_SSF48726
INHA	3623	genome.wustl.edu	37	2	220439618	220439618	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002191.2	+1	reviewed	p.L157	0.669	86	0%	51	27.5%	0	-	-	-	-	NULL
SLC4A3	6508	genome.wustl.edu	37	2	220499180	220499180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201574.2	+1	validated	p.V561M	1.000	195	0%	83	25.3%	1	0%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
EPHA4	2043	genome.wustl.edu	37	2	222291194	222291194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004438.3	-1	reviewed	p.V946M	1.000	205	0%	121	22.3%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_2
MRPL44	65080	genome.wustl.edu	37	2	224828614	224828614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022915.3	+1	reviewed	p.T264A	1.000	148	0%	105	25.7%	56	37.5%	benign(0.019)	tolerated(0.23)	neutral(0.043)	superfamily_SSF54768
CUL3	8452	genome.wustl.edu	37	2	225338991	225338991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003590.3	-1	validated	p.D760N	1.000	335	0%	216	25.9%	81	54.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"PatternScan_CULLIN_1,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"
CUL3	8452	genome.wustl.edu	37	2	225371718	225371718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003590.3	-1	validated	p.L296I	1.000	100	0%	59	18.6%	52	21.1%	possibly_damaging(0.913)	tolerated(0.07)	deleterious(0.683)	HMMPfam_Cullin,superfamily_Cullin repeat
CUL3	8452	genome.wustl.edu	37	2	225422491	225422491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003590.3	-1	validated	p.S50N	1.000	165	0%	98	35.7%	38	39.4%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Cullin,superfamily_Cullin repeat
DOCK10	55619	genome.wustl.edu	37	2	225714292	225714292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.P723S	0.988	72	0%	41	29.3%	1	100%	benign(0.009)	tolerated(0.31)	neutral(0.028)	NULL
NYAP2	57624	genome.wustl.edu	37	2	226446672	226446672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.R180I	1.000	458	0%	252	24.2%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
IRS1	3667	genome.wustl.edu	37	2	227662921	227662921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005544.2	-1	reviewed	p.N178K	1.000	51	0%	22	31.8%	3	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
COL4A3	1285	genome.wustl.edu	37	2	228128611	228128611	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.C422	0.883	85	0%	44	31.8%	0	-	-	-	-	NULL
COL4A3	1285	genome.wustl.edu	37	2	228173948	228173948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.A1557T	0.997	106	0%	87	29.9%	0	-	unknown(0)	tolerated(0.17)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
TM4SF20	79853	genome.wustl.edu	37	2	228243814	228243814	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024795.3	-1	validated	p.G57	1.000	335	0%	194	19.6%	1	0%	-	-	-	HMMPfam_L6_membrane
TM4SF20	79853	genome.wustl.edu	37	2	228243844	228243844	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024795.3	-1	validated	p.C47	1.000	371	0%	210	16.7%	1	0%	-	-	-	HMMPfam_L6_membrane
WDR69	164781	genome.wustl.edu	37	2	228754597	228754597	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178821.1	+1	provisional	p.E47*	1.000	151	0%	96	31.2%	0	-	-	-	-	superfamily_WD40 repeat-like
SPHKAP	80309	genome.wustl.edu	37	2	228881746	228881746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.Q1275R	1.000	130	0.8%	67	16.4%	0	-	possibly_damaging(0.713)	tolerated(0.87)	neutral(0.258)	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228996762	228996762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.P24	0.000	239	0%	182	13.7%	0	-	-	-	-	NULL
TRIP12	9320	genome.wustl.edu	37	2	230675682	230675682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004238.1	-1	provisional	p.S664I	1.000	228	0%	152	29.6%	43	39.5%	possibly_damaging(0.84)	deleterious(0)	deleterious(0.766)	superfamily_ARM-type_fold
TRIP12	9320	genome.wustl.edu	37	2	230723710	230723710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004238.1	-1	provisional	p.D227Y	1.000	199	0%	111	36.9%	41	53.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SP110	3431	genome.wustl.edu	37	2	231036822	231036822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080424.2	-1	reviewed	p.S592Y	0.008	287	0%	170	23.5%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Bromodomain
SP140	11262	genome.wustl.edu	37	2	231175567	231175567	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007237.4	+1	validated	e24+1	0.259	147	0%	101	10.9%	0	-	-	-	-	-
SP140L	93349	genome.wustl.edu	37	2	231264878	231264878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138402.4	+1	provisional	p.G412R	0.000	156	0%	65	16.9%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SP100	6672	genome.wustl.edu	37	2	231314905	231314905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080391.1	+1	validated	p.A252V	0.000	462	0%	319	21%	16	12.5%	benign(0.077)	deleterious(0.04)	neutral(0.354)	NULL
PSMD1	5707	genome.wustl.edu	37	2	231948391	231948391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002807.2	+1	reviewed	p.R546C	1.000	144	0.7%	63	30.2%	77	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ARMC9	80210	genome.wustl.edu	37	2	232081416	232081416	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025139.3	+1	validated	p.A138	0.012	493	0%	261	28.4%	11	45.4%	-	-	-	superfamily_ARM-type_fold
ARMC9	80210	genome.wustl.edu	37	2	232141379	232141379	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424740	+1	known	p.T158M	0.314	197	0%	99	23.2%	8	25%	-	-	-	superfamily_ARM repeat
ARMC9	80210	genome.wustl.edu	37	2	232209723	232209723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025139.3	+1	validated	p.L639M	0.021	177	0%	91	18.7%	2	0%	benign(0.186)	tolerated(0.26)	neutral(0.052)	NULL
NCL	4691	genome.wustl.edu	37	2	232321430	232321430	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.A539	0.999	299	0%	174	30.5%	593	40.8%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
NCL	4691	genome.wustl.edu	37	2	232322046	232322046	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356936	-1	known	p.Q91	0.000	43	0%	24	20.8%	2	50%	-	-	-	superfamily_RNA-binding domain RBD
NCL	4691	genome.wustl.edu	37	2	232326683	232326683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.A61S	0.987	269	0.4%	151	25.2%	470	35.7%	unknown(0)	tolerated(0.17)	-	NULL
DIS3L2	129563	genome.wustl.edu	37	2	233128076	233128076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152383.4	+1	validated	p.V529I	0.941	222	0%	121	22.3%	23	34.7%	possibly_damaging(0.68)	tolerated(0.11)	deleterious(0.514)	HMMPfam_RNB
CHRNG	1146	genome.wustl.edu	37	2	233404729	233404729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005199.4	+1	reviewed	p.R28H	0.887	62	0%	34	17.6%	0	-	possibly_damaging(0.88)	deleterious(0.01)	deleterious(0.749)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GIGYF2	26058	genome.wustl.edu	37	2	233625284	233625284	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.S158	0.826	106	0%	58	31%	11	27.2%	-	-	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233633105	233633105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421778	+1	known	p.M1I	1.000	483	0.4%	322	25.5%	1	0%	benign(0.05)	deleterious(0)	neutral(0.448)	NULL
NEU2	4759	genome.wustl.edu	37	2	233898994	233898994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005383.2	+1	reviewed	p.L124M	1.000	93	0%	66	30.3%	0	-	possibly_damaging(0.771)	deleterious(0.01)	deleterious(0.692)	superfamily_Sialidase
NEU2	4759	genome.wustl.edu	37	2	233899290	233899290	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005383.2	+1	reviewed	p.A222	0.011	67	0%	30	30%	0	-	-	-	-	superfamily_Sialidase
INPP5D	3635	genome.wustl.edu	37	2	234079188	234079188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359570	+1	known	p.D613G	1.000	87	1.1%	33	24.2%	4	0%	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
ATG16L1	55054	genome.wustl.edu	37	2	234183416	234183416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030803.6	+1	validated	p.C316R	0.221	88	0%	58	22.4%	18	55.5%	possibly_damaging(0.952)	tolerated(0.34)	neutral(0.419)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ATG16L1	55054	genome.wustl.edu	37	2	234202917	234202917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030803.6	+1	validated	p.A582V	0.998	165	0%	60	11.7%	15	20%	unknown(0)	tolerated(0.06)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DGKD	8527	genome.wustl.edu	37	2	234368442	234368442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.V912M	1.000	136	0%	70	32.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_acc,HMMSmart_SM00045
UGT1A9	54600	genome.wustl.edu	37	2	234581225	234581225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021027.2	+1	reviewed	p.E215D	0.726	1183	0.3%	1057	30%	0	-	benign(0.023)	tolerated(0.19)	neutral(0.051)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A6	54578	genome.wustl.edu	37	2	234602356	234602356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001072.3	+1	reviewed	p.V236I	0.041	1072	0%	676	30.3%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
HJURP	55355	genome.wustl.edu	37	2	234761226	234761226	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454020	-1	known	p.R67*	0.000	177	0%	88	29.5%	10	40%	-	-	-	NULL
LOC100130859	100130859	genome.wustl.edu	37	2	234863718	234863718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715340.1	-1	model	p.T114I	0.000	113	0%	64	25%	0	-	-	-	-	NULL
TRPM8	79054	genome.wustl.edu	37	2	234916724	234916724	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024080.4	+1	validated	p.R1081*	1.000	715	0.1%	492	21.7%	0	-	-	-	-	NULL
SPP2	6694	genome.wustl.edu	37	2	234978631	234978631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006944.2	+1	reviewed	p.A204S	0.238	613	0%	346	27.2%	0	-	benign(0.316)	tolerated(0.11)	neutral(0.371)	HMMPfam_Spp-24
SH3BP4	23677	genome.wustl.edu	37	2	235951300	235951300	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014521.2	+1	reviewed	p.N629	0.827	156	0%	64	23.4%	42	38%	-	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236653482	236653482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.Q179H	1.000	87	0%	61	32.8%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGAP1	116987	genome.wustl.edu	37	2	236659077	236659077	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.T206	0.015	174	0%	102	29.4%	5	40%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGAP1	116987	genome.wustl.edu	37	2	236706450	236706450	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.G241*	0.999	608	0%	272	10.7%	17	11.7%	-	-	-	NULL
IQCA1	79781	genome.wustl.edu	37	2	237240054	237240054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024726.3	-1	provisional	p.T774M	0.000	436	0%	245	28.6%	0	-	possibly_damaging(0.771)	deleterious(0.04)	deleterious(0.635)	superfamily_P-loop containing nucleoside triphosphate hydrolases
IQCA1	79781	genome.wustl.edu	37	2	237396759	237396759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024726.3	-1	provisional	p.R178C	0.998	18	0%	18	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CXCR7	57007	genome.wustl.edu	37	2	237489597	237489597	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020311.2	+1	reviewed	p.V163	0.000	473	0%	211	28.9%	14	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
COL6A3	1293	genome.wustl.edu	37	2	238275403	238275403	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.S1809	0.800	291	0%	147	17.7%	24	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238275811	238275811	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.G1673	0.000	105	0%	56	10.7%	22	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238296600	238296600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.G313R	0.001	122	0%	63	30.2%	1	0%	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303578	238303578	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.G121*	1.000	113	0%	67	19.4%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303634	238303634	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.V102G	1.000	113	0%	75	30.7%	0	-	unknown(0)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL6A3	1293	genome.wustl.edu	37	2	238303759	238303759	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.E60	1.000	61	0%	46	17.4%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
LRRFIP1	9208	genome.wustl.edu	37	2	238672115	238672115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137552.1	+1	validated	p.T587A	0.000	166	0%	78	26.9%	51	60.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ILKAP	80895	genome.wustl.edu	37	2	239079501	239079501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450411	-1	known	p.P191H	0.000	167	0%	109	27.5%	1	0%	unknown(0)	-	-	NULL
ILKAP	80895	genome.wustl.edu	37	2	239090728	239090728	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030768.2	-1	reviewed	p.Q272*	1.000	482	0%	269	29%	32	6.2%	-	-	-	HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C
PER2	8864	genome.wustl.edu	37	2	239180087	239180087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022817.2	-1	reviewed	p.S213F	0.895	176	0%	96	28.1%	12	41.6%	possibly_damaging(0.789)	tolerated(0.7)	neutral(0.298)	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)
TRAF3IP1	26146	genome.wustl.edu	37	2	239233994	239233994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015650.3	+1	validated	p.E57D	1.000	124	0%	83	27.7%	10	30%	benign(0.006)	tolerated(0.06)	neutral(0.323)	HMMPfam_MIP-T3
TRAF3IP1	26146	genome.wustl.edu	37	2	239261825	239261825	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015650.3	+1	validated	p.V529	0.004	538	0%	280	27.9%	24	41.6%	-	-	-	HMMPfam_MIP-T3
HDAC4	9759	genome.wustl.edu	37	2	240066297	240066297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006037.3	-1	reviewed	p.R283C	1.000	98	0%	41	19.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDUFA10	4705	genome.wustl.edu	37	2	240944633	240944633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004544.3	-1	reviewed	p.R295Q	0.997	562	0%	310	25.5%	193	53.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PRR21	643905	genome.wustl.edu	37	2	240982159	240982159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080835.1	-1	provisional	p.R81W	0.000	199	0%	111	25.2%	0	-	possibly_damaging(0.737)	tolerated(0.07)	deleterious(0.589)	NULL
MTERFD2	130916	genome.wustl.edu	37	2	242038982	242038982	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182501.3	-1	validated	p.R117*	0.001	205	0%	110	21.8%	9	33.3%	-	-	-	HMMPfam_mTERF
PASK	23178	genome.wustl.edu	37	2	242054538	242054538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.G1085S	1.000	223	0.4%	89	32.6%	8	75%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HDLBP	3069	genome.wustl.edu	37	2	242174614	242174614	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373292	-1	known	p.P831S	0.983	91	0%	40	22.5%	511	7.4%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
HDLBP	3069	genome.wustl.edu	37	2	242181874	242181874	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	e15+1	1.000	43	0%	20	20%	122	98.3%	-	-	-	-
FARP2	9855	genome.wustl.edu	37	2	242344257	242344257	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014808.2	+1	validated	e3+1	1.000	154	0%	94	16%	0	-	-	-	-	-
FARP2	9855	genome.wustl.edu	37	2	242401952	242401952	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014808.2	+1	validated	p.D534	1.000	132	0%	71	26.8%	4	25%	-	-	-	superfamily_DBL homology domain (DH-domain)
THAP4	51078	genome.wustl.edu	37	2	242573144	242573144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015963.5	-1	validated	p.R143M	0.003	73	0%	37	35.1%	47	48.9%	benign(0.301)	deleterious(0)	deleterious(0.537)	NULL
DTYMK	1841	genome.wustl.edu	37	2	242617946	242617946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012145.3	-1	validated	p.R150H	0.993	91	0%	39	23.1%	118	48.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Thymidylate_kin,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNTN6	27255	genome.wustl.edu	37	3	1337344	1337344	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.R172*	0.143	198	0%	128	25.8%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
CNTN4	152330	genome.wustl.edu	37	3	3067883	3067883	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.D528	1.000	147	0%	121	14.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CRBN	51185	genome.wustl.edu	37	3	3197928	3197928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016302.3	-1	reviewed	p.R242H	1.000	152	0%	90	25.6%	17	35.2%	benign(0.314)	tolerated(0.13)	neutral(0.351)	HMMPfam_LON,HMMSmart_SM00464
SUMF1	285362	genome.wustl.edu	37	3	4494730	4494730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182760.3	-1	reviewed	p.V92F	1.000	88	0%	61	18%	32	31.2%	possibly_damaging(0.951)	tolerated(0.08)	deleterious(0.694)	HMMPfam_DUF323
ITPR1	3708	genome.wustl.edu	37	3	4699825	4699825	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.D338	0.190	328	0%	198	21.2%	2	0%	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
ITPR1	3708	genome.wustl.edu	37	3	4767259	4767259	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356617	+1	known	p.A1718	0.989	96	0%	40	22.5%	0	-	-	-	-	NULL
BHLHE40	8553	genome.wustl.edu	37	3	5024938	5024938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003670.2	+1	reviewed	p.R267H	0.101	158	0%	86	30.2%	80	37.5%	benign(0.008)	tolerated(0.1)	neutral(0.286)	NULL
GRM7	2917	genome.wustl.edu	37	3	7340422	7340422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.R263M	1.000	333	0%	219	30.1%	0	-	benign(0.037)	tolerated(0.07)	neutral(0.321)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRM7	2917	genome.wustl.edu	37	3	7494418	7494418	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.Y433	0.976	200	0%	181	28.7%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
C3orf32	51066	genome.wustl.edu	37	3	8667953	8667953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015931.1	-1	predicted	p.E221D	1.000	395	0%	220	25%	1	0%	possibly_damaging(0.918)	tolerated(0.45)	neutral(0.381)	NULL
OXTR	5021	genome.wustl.edu	37	3	8808963	8808963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000916.3	-1	reviewed	p.A304V	1.000	29	0%	14	64.3%	0	-	probably_damaging(0.989)	tolerated(0.09)	deleterious(0.736)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SRGAP3	9901	genome.wustl.edu	37	3	9106266	9106266	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014850.2	-1	validated	e5-1	1.000	144	0%	73	28.8%	0	-	-	-	-	-
SRGAP3	9901	genome.wustl.edu	37	3	9166472	9166472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014850.2	-1	validated	p.S66I	1.000	207	0%	90	22.2%	7	42.8%	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	HMMPfam_FCH,HMMSmart_SM00055
SETD5	55209	genome.wustl.edu	37	3	9476118	9476118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.C93Y	1.000	115	0%	91	33%	21	47.6%	possibly_damaging(0.659)	deleterious(0)	deleterious(0.677)	NULL
SETD5	55209	genome.wustl.edu	37	3	9488863	9488863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.T552A	0.265	454	0%	236	12.7%	30	23.3%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
CPNE9	151835	genome.wustl.edu	37	3	9771208	9771208	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153635.2	+1	validated	p.D498	1.000	226	0%	111	27.9%	0	-	-	-	-	superfamily_SSF53300
BRPF1	7862	genome.wustl.edu	37	3	9781322	9781322	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003694.1	+1	reviewed	p.C413	0.988	104	0%	47	17%	11	36.3%	-	-	-	HMMSmart_PHD
OGG1	4968	genome.wustl.edu	37	3	9792780	9792780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016821.2	+1	reviewed	p.R97C	0.014	58	0%	32	12.5%	10	30%	possibly_damaging(0.84)	deleterious(0.02)	deleterious(0.705)	superfamily_TFIID_C/glycos_N,HMMPfam_OGG_N
OGG1	4968	genome.wustl.edu	37	3	9793509	9793509	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000352937	+1	known	p.L53I	1.000	239	0%	136	13.2%	19	26.3%	-	-	-	HMMPfam_HhH-GPD,HMMSmart_SM00478,superfamily_DNA-glycosylase
TADA3	10474	genome.wustl.edu	37	3	9822193	9822193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006354.2	-1	reviewed	p.R383W	1.000	84	1.2%	33	36.4%	167	37.1%	benign(0.068)	deleterious(0)	neutral(0.449)	HMMPfam_Ada3
TTLL3	26140	genome.wustl.edu	37	3	9874855	9874855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025930.2	+1	provisional	p.P541H	0.968	101	2%	51	39.2%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPUSD3	285367	genome.wustl.edu	37	3	9880825	9880825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173659.3	-1	validated	p.V252A	0.009	126	0%	68	32.4%	53	30.1%	benign(0.008)	tolerated(0.85)	neutral(0.001)	HMMPfam_PseudoU_synth_2,superfamily_Pseudouridine synthase
IL17RE	132014	genome.wustl.edu	37	3	9948406	9948406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153480.1	+1	reviewed	p.R128H	0.004	313	0%	172	17.4%	0	-	benign(0.09)	tolerated(0.09)	neutral(0.303)	NULL
FANCD2	2177	genome.wustl.edu	37	3	10094113	10094113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033084.3	+1	reviewed	p.R530*	1.000	490	0%	279	31.5%	8	12.5%	-	-	-	NULL
IRAK2	3656	genome.wustl.edu	37	3	10264436	10264436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001570.3	+1	reviewed	p.T377M	0.771	218	0%	105	12.4%	2	0%	benign(0.032)	deleterious(0.03)	neutral(0.366)	superfamily_Kinase_like
SEC13	6396	genome.wustl.edu	37	3	10353685	10353685	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183352.1	-1	reviewed	p.G138	0.999	26	0%	16	50%	220	42.2%	-	-	-	superfamily_WD40_like
ATP2B2	491	genome.wustl.edu	37	3	10401790	10401790	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.G559	0.013	92	0%	55	25.5%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP2B2	491	genome.wustl.edu	37	3	10419938	10419938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.A400V	1.000	38	0%	12	33.3%	0	-	benign(0.057)	tolerated(0.74)	neutral(0.005)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATP2B2	491	genome.wustl.edu	37	3	10442718	10442718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.L234I	1.000	71	0%	46	21.7%	0	-	benign(0.365)	tolerated(0.11)	neutral(0.388)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
SLC6A1	6529	genome.wustl.edu	37	3	11067538	11067538	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003042.3	+1	validated	p.N310T	1.000	257	0%	120	19.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF
SLC6A1	6529	genome.wustl.edu	37	3	11071023	11071023	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003042.3	+1	validated	p.L436	0.997	92	0%	42	19%	0	-	-	-	-	HMMPfam_SNF
RAF1	5894	genome.wustl.edu	37	3	12633236	12633236	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002880.3	-1	reviewed	p.Q388	1.000	211	0%	123	30.1%	70	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAND2	23066	genome.wustl.edu	37	3	12858887	12858887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012298.2	+1	validated	p.A726V	0.884	50	0%	24	25%	0	-	benign(0.054)	tolerated(0.3)	neutral(0.032)	NULL
NUP210	23225	genome.wustl.edu	37	3	13376972	13376972	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.S1275	0.010	63	0%	32	37.5%	11	45.4%	-	-	-	NULL
NUP210	23225	genome.wustl.edu	37	3	13383587	13383587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.V1001M	0.996	93	0%	32	18.8%	13	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
SLC6A6	6533	genome.wustl.edu	37	3	14518800	14518800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134367.1	+1	validated	p.A433T	1.000	93	0%	41	31.7%	39	30.7%	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	HMMPfam_SNF
SLC6A6	6533	genome.wustl.edu	37	3	14523290	14523290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134367.1	+1	validated	p.L555I	0.997	98	0%	47	23.4%	42	30.9%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_SNF
C3orf20	84077	genome.wustl.edu	37	3	14746064	14746064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032137.4	+1	validated	p.K367E	0.001	539	0%	319	12.5%	0	-	benign(0.035)	deleterious(0.02)	neutral(0.385)	NULL
C3orf20	84077	genome.wustl.edu	37	3	14801446	14801446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032137.4	+1	validated	p.L765M	0.324	80	0%	44	36.4%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
FGD5	152273	genome.wustl.edu	37	3	14862827	14862827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.R750Q	1.000	312	0%	162	37.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGD5	152273	genome.wustl.edu	37	3	14974148	14974148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.G1421D	0.914	231	0%	169	24.3%	7	0%	benign(0.137)	tolerated(0.09)	neutral(0.308)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZFYVE20	64145	genome.wustl.edu	37	3	15119633	15119633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.S316I	0.015	162	0%	110	12.7%	8	50%	benign(0.023)	tolerated(0.17)	neutral(0.060)	NULL
HACL1	26061	genome.wustl.edu	37	3	15628054	15628054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012260.2	-1	validated	p.A146V	0.366	147	0%	109	10.1%	16	25%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_TPP_enzyme_N,superfamily_SSF52518
ANKRD28	23243	genome.wustl.edu	37	3	15736693	15736693	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	e16+2	1.000	59	0%	47	42.6%	0	-	-	-	-	-
ANKRD28	23243	genome.wustl.edu	37	3	15737718	15737718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	p.P498S	1.000	58	0%	38	31.6%	14	28.5%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GALNTL2	117248	genome.wustl.edu	37	3	16250125	16250125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.P343S	1.000	334	0%	162	24.1%	1	0%	possibly_damaging(0.733)	tolerated(0.98)	neutral(0.268)	HMMPfam_Glycos_transf_2,superfamily_SSF53448
GALNTL2	117248	genome.wustl.edu	37	3	16254266	16254266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.S463N	1.000	84	0%	39	43.6%	0	-	possibly_damaging(0.61)	tolerated(0.35)	neutral(0.232)	superfamily_SSF53448
GALNTL2	117248	genome.wustl.edu	37	3	16261019	16261019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054110.4	+1	validated	p.P501H	0.001	539	0.2%	263	31.6%	1	0%	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_RicinB_like
DPH3	285381	genome.wustl.edu	37	3	16305692	16305692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206831.2	-1	reviewed	p.C51*	1.000	41	0%	24	41.7%	15	20%	-	-	-	HMMPfam_zf-CSL
DAZL	1618	genome.wustl.edu	37	3	16635170	16635170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001351.2	-1	reviewed	p.P243S	1.000	131	0%	86	11.6%	0	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	NULL
PLCL2	23228	genome.wustl.edu	37	3	17109488	17109488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015184.5	+1	validated	p.K919N	1.000	372	0%	224	28.1%	25	72%	possibly_damaging(0.453)	tolerated(0.06)	deleterious(0.471)	NULL
TBC1D5	9779	genome.wustl.edu	37	3	17255700	17255700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134381.1	-1	validated	p.S606Y	1.000	134	0%	90	25.6%	18	27.7%	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	NULL
SATB1	6304	genome.wustl.edu	37	3	18436153	18436153	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.L336R	1.000	249	0%	144	22.9%	3	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KCNH8	131096	genome.wustl.edu	37	3	19492778	19492778	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144633.2	+1	reviewed	p.T569	1.000	236	0%	167	26.9%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
EFHB	151651	genome.wustl.edu	37	3	19975026	19975026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144715.3	-1	validated	p.A162V	0.000	439	0%	260	23.8%	1	0%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
UBE2E1	7324	genome.wustl.edu	37	3	23848884	23848884	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003341.3	+1	reviewed	p.S42T	1.000	131	0%	55	29.1%	117	42.7%	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_UBC-like
RARB	5915	genome.wustl.edu	37	3	25635198	25635198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000965.3	+1	reviewed	p.D331N	1.000	242	0%	136	30.1%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
TOP2B	7155	genome.wustl.edu	37	3	25662277	25662277	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001068.2	-1	reviewed	p.I915L	0.999	81	0%	68	27.9%	50	8%	probably_damaging(0.966)	deleterious(0.02)	deleterious(0.791)	HMMPfam_DNA_topoisoIV,HMMSmart_TOP4c,superfamily_Topo_IIA_cen
TOP2B	7155	genome.wustl.edu	37	3	25668756	25668756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001068.2	-1	reviewed	p.K641N	1.000	402	0%	317	26.2%	34	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TOP2c,superfamily_Topo_IIA_cen
OXSM	54995	genome.wustl.edu	37	3	25832875	25832875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017897.2	+1	reviewed	p.A122T	1.000	229	0%	142	32.4%	15	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ketoacyl-synt,superfamily_Thiolase-like
NEK10	152110	genome.wustl.edu	37	3	27385817	27385817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199347.2	-1	validated	p.R103H	1.000	63	0%	41	22%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_ARM repeat
SLC4A7	9497	genome.wustl.edu	37	3	27418278	27418278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.V1208M	0.929	143	0%	97	22.7%	10	50%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
SLC4A7	9497	genome.wustl.edu	37	3	27444629	27444629	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	e15+1	1.000	443	0%	311	24.8%	0	-	-	-	-	-
EOMES	8320	genome.wustl.edu	37	3	27758689	27758689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005442.2	-1	reviewed	p.L645M	1.000	318	0%	207	28.5%	8	50%	benign(0.014)	tolerated(0.09)	neutral(0.297)	NULL
TGFBR2	7048	genome.wustl.edu	37	3	30686366	30686366	+	Silent	SNP	C	C	A	rs112864356		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024847.2	+1	reviewed	p.T99	0.002	263	0%	165	29.1%	5	20%	-	-	-	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like
STT3B	201595	genome.wustl.edu	37	3	31663636	31663636	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178862.1	+1	provisional	p.R459*	1.000	446	0%	273	27.1%	66	12.1%	-	-	-	HMMPfam_STT3
STT3B	201595	genome.wustl.edu	37	3	31677491	31677491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178862.1	+1	provisional	p.R806C	1.000	154	0%	95	34.7%	86	75.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GPD1L	23171	genome.wustl.edu	37	3	32207339	32207339	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015141.3	+1	validated	p.C331	1.000	109	0%	47	34%	21	47.6%	-	-	-	HMMPfam_NAD_Gly3P_dh_C,superfamily_6DGDH_C_like
TRIM71	131405	genome.wustl.edu	37	3	32927537	32927537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039111.1	+1	provisional	p.R378C	1.000	57	0%	26	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCR4	1233	genome.wustl.edu	37	3	32995640	32995640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005508.4	+1	reviewed	p.K242N	1.000	117	0%	68	27.9%	2	0%	benign(0.334)	deleterious(0)	deleterious(0.549)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GLB1	2720	genome.wustl.edu	37	3	33058289	33058289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000404.2	-1	reviewed	p.N464S	1.000	265	0%	175	29.1%	188	46.2%	benign(0.01)	tolerated(0.5)	neutral(0.011)	NULL
SUSD5	26032	genome.wustl.edu	37	3	33194377	33194377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015551.1	-1	validated	p.L583M	0.983	142	0%	92	30.4%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
CLASP2	23122	genome.wustl.edu	37	3	33580287	33580287	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.G1184	0.634	90	0%	57	28.1%	27	48.1%	-	-	-	superfamily_ARM repeat
PDCD6IP	10015	genome.wustl.edu	37	3	33877666	33877666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013374.4	+1	validated	p.R322Q	1.000	329	0.3%	192	20.8%	79	41.7%	probably_damaging(0.996)	tolerated(0.17)	deleterious(0.520)	HMMPfam_BRO1
ARPP21	10777	genome.wustl.edu	37	3	35770848	35770848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.P427S	0.943	123	0%	73	15.1%	0	-	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
STAC	6769	genome.wustl.edu	37	3	36527723	36527723	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003149.1	+1	provisional	p.D223	0.222	258	0%	147	32%	1	0%	-	-	-	NULL
TRANK1	9881	genome.wustl.edu	37	3	36872756	36872756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.G2179V	0.997	340	0%	137	10.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36873485	36873485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.A1936V	0.998	754	0%	365	26%	3	33.3%	benign(0)	tolerated(1)	-	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37033966	37033966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.E201D	0.000	192	0%	92	22.8%	2	0%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37034308	37034308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.P87	0.000	62	0%	24	41.7%	1	0%	-	-	-	NULL
LRRFIP2	9209	genome.wustl.edu	37	3	37095398	37095398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006309.2	-1	validated	p.A704T	1.000	269	0%	180	23.9%	34	35.2%	benign(0.017)	tolerated(0.56)	neutral(0.007)	NULL
LRRFIP2	9209	genome.wustl.edu	37	3	37154434	37154434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006309.2	-1	validated	p.R137M	0.848	271	0%	175	28.6%	0	-	benign(0.066)	tolerated(0.09)	neutral(0.301)	HMMPfam_DUF2051
GOLGA4	2803	genome.wustl.edu	37	3	37370023	37370023	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.T2019N	1.000	246	0%	193	14.5%	34	23.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
ITGA9	3680	genome.wustl.edu	37	3	37512618	37512618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002207.2	+1	reviewed	p.M102I	1.000	235	0%	123	27.6%	0	-	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGA9	3680	genome.wustl.edu	37	3	37512625	37512625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002207.2	+1	reviewed	p.G105W	1.000	229	0%	111	25.2%	0	-	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	superfamily_SSF69318
ITGA9	3680	genome.wustl.edu	37	3	37791971	37791971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002207.2	+1	reviewed	p.S818G	0.988	156	0%	65	38.5%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
CTDSPL	10217	genome.wustl.edu	37	3	37988620	37988620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008392.1	+1	validated	p.R51H	1.000	107	0%	62	27.4%	17	35.2%	benign(0.083)	tolerated(0.5)	neutral(0.016)	NULL
PLCD1	5333	genome.wustl.edu	37	3	38050789	38050789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130964.1	-1	validated	p.R548H	1.000	156	0.6%	45	24.4%	4	25%	possibly_damaging(0.884)	deleterious(0.01)	deleterious(0.750)	HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_PLC-like_Pdiesterase_TIM-brl
DLEC1	9940	genome.wustl.edu	37	3	38158562	38158562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.A1426T	1.000	259	0%	132	29.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EXOG	9941	genome.wustl.edu	37	3	38548430	38548430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005107.3	+1	reviewed	p.G206C	0.002	156	0%	90	23.3%	8	25%	benign(0.3)	tolerated(0.05)	neutral(0.439)	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
SCN10A	6336	genome.wustl.edu	37	3	38739051	38739051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.A1887V	0.000	382	0%	213	10.3%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
WDR48	57599	genome.wustl.edu	37	3	39135514	39135514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020839.2	+1	provisional	p.A632V	1.000	286	0%	145	35.2%	27	59.2%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
CSRNP1	64651	genome.wustl.edu	37	3	39186566	39186566	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033027.3	-1	reviewed	p.A129	0.000	74	0%	36	36.1%	4	25%	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39229229	39229229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.R570*	0.065	158	0%	72	22.2%	0	-	-	-	-	NULL
LOC729454	729454	genome.wustl.edu	37	3	39255943	39255943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001130287.2	+1	model	p.A180V	1.000	260	0%	144	27.8%	0	-	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
CX3CR1	1524	genome.wustl.edu	37	3	39307393	39307393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001337.3	-1	reviewed	p.P203L	0.991	353	0%	179	13.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MYRIP	25924	genome.wustl.edu	37	3	40085745	40085745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396217	+1	known	p.A62V	0.296	179	0%	101	24.8%	12	50%	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
ENTPD3	956	genome.wustl.edu	37	3	40442474	40442474	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001248.2	+1	validated	p.V86	0.955	305	0%	167	25.7%	31	61.2%	-	-	-	HMMPfam_GDA1_CD39
ZNF619	285267	genome.wustl.edu	37	3	40528369	40528369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145082.2	+1	validated	p.R163I	0.002	440	0%	220	23.6%	3	66.6%	possibly_damaging(0.679)	deleterious(0)	deleterious(0.686)	NULL
ZNF620	253639	genome.wustl.edu	37	3	40558357	40558357	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024114.1	+1	validated	NULL	0.000	282	0%	165	24.8%	2	50%	-	-	-	-
ZNF621	285268	genome.wustl.edu	37	3	40574032	40574032	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098414.1	+1	validated	p.H257	1.000	297	0%	160	10.6%	10	80%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRAK1	22906	genome.wustl.edu	37	3	42264774	42264774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042646.1	+1	validated	p.S803G	1.000	71	0%	33	27.3%	15	33.3%	benign(0.253)	tolerated(0.42)	neutral(0.040)	NULL
TRAK1	22906	genome.wustl.edu	37	3	42265029	42265029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042646.1	+1	validated	p.G888C	1.000	47	0%	26	23.1%	18	38.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC100287203	100287203	genome.wustl.edu	37	3	42730159	42730159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342329.1	-1	model	p.H146Y	1.000	56	0%	29	27.6%	0	-	-	-	-	NULL
CCBP2	1238	genome.wustl.edu	37	3	42906455	42906455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001296.4	+1	reviewed	p.R154M	0.000	592	0%	337	33.2%	3	0%	possibly_damaging(0.673)	deleterious(0)	deleterious(0.683)	HMMPfam_7tm_1,superfamily_SSF81321
CYP8B1	1582	genome.wustl.edu	37	3	42916213	42916213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004391.2	-1	reviewed	p.L366M	0.011	234	0%	112	20.5%	0	-	probably_damaging(0.982)	tolerated(0.07)	deleterious(0.746)	HMMPfam_p450,superfamily_Cytochrome P450
ZNF662	389114	genome.wustl.edu	37	3	42956562	42956562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134656.1	+1	validated	p.E359K	0.979	190	0%	107	16.8%	2	0%	possibly_damaging(0.945)	tolerated(0.07)	deleterious(0.709)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SNRK	54861	genome.wustl.edu	37	3	43389942	43389942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100594.1	+1	validated	p.L731M	1.000	213	0%	119	28.6%	11	9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ABHD5	51099	genome.wustl.edu	37	3	43753250	43753250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016006.4	+1	reviewed	p.D186Y	1.000	231	0%	147	23.8%	72	56.9%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
C3orf23	285343	genome.wustl.edu	37	3	44402996	44402996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173826.3	+1	validated	p.P102H	0.005	254	0%	128	32%	17	58.8%	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
ZNF660	285349	genome.wustl.edu	37	3	44636229	44636229	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173658.1	+1	provisional	p.R182*	0.990	262	0%	135	30.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF35	7584	genome.wustl.edu	37	3	44694070	44694070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003420.3	+1	validated	p.M72V	1.000	810	0.1%	479	29%	1	0%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
KIF15	56992	genome.wustl.edu	37	3	44869001	44869001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020242.2	+1	validated	p.T946M	1.000	106	0%	54	24.1%	15	60%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
KIF15	56992	genome.wustl.edu	37	3	44879889	44879889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429516	+1	known	p.P1097S	0.972	119	0%	64	26.6%	7	57.1%	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
KIF15	56992	genome.wustl.edu	37	3	44884644	44884644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020242.2	+1	validated	p.R1205C	0.991	117	0%	93	28%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TGM4	7047	genome.wustl.edu	37	3	44952500	44952500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003241.3	+1	validated	p.A553T	0.000	217	0%	112	31.2%	0	-	benign(0.007)	tolerated(0.26)	neutral(0.034)	superfamily_Transglut_C
ZDHHC3	51304	genome.wustl.edu	37	3	44974424	44974424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016598.2	-1	validated	p.M223I	0.001	294	0%	162	18.5%	5	80%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
LARS2	23395	genome.wustl.edu	37	3	45541932	45541932	+	Splice_Site	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015340.3	+1	reviewed	e13-2	0.999	258	0%	170	30%	0	-	-	-	-	-
LIMD1	8994	genome.wustl.edu	37	3	45677737	45677737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014240.2	+1	validated	p.A502T	1.000	580	0%	300	25%	13	30.7%	benign(0.025)	tolerated(0.25)	neutral(0.038)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
CCR2	729230	genome.wustl.edu	37	3	46399126	46399126	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123041.2	+1	validated	p.D36	0.000	471	0%	333	13.2%	1	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
CCR2	729230	genome.wustl.edu	37	3	46399961	46399961	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123041.2	+1	validated	e1+2	0.020	373	0%	206	23.8%	0	-	-	-	-	-
CCR5	1234	genome.wustl.edu	37	3	46414598	46414598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000579.3	+1	reviewed	p.L69M	1.000	495	0.2%	357	21%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LTF	4057	genome.wustl.edu	37	3	46484955	46484955	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.Y544*	0.976	616	0.2%	312	30.8%	320	0%	-	-	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
LTF	4057	genome.wustl.edu	37	3	46497462	46497462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002343.2	-1	reviewed	p.R108Q	0.007	82	0%	59	42.4%	125	0%	benign(0.007)	tolerated(1)	-	HMMPfam_Transferrin,HMMSmart_TR_FER,superfamily_SSF53850
LRRC2	79442	genome.wustl.edu	37	3	46560532	46560532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024512.3	-1	validated	p.T363I	1.000	536	0%	341	26.1%	4	50%	benign(0.261)	deleterious(0.01)	neutral(0.433)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47036998	47036998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.M591I	1.000	24	0%	15	40%	11	36.3%	probably_damaging(0.99)	tolerated(0.31)	deleterious(0.469)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47041651	47041651	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.T1354	0.000	70	0%	17	41.2%	19	31.5%	-	-	-	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47041748	47041748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.G1387C	0.949	27	0%	12	41.7%	26	50%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47049305	47049305	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	e49-1	1.000	22	0.000	7	0.571	3	66.6%	-	-	-	-
SETD2	29072	genome.wustl.edu	37	3	47162659	47162659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.R1156H	0.165	551	0%	401	29.4%	14	50%	benign(0)	tolerated(1)	-	NULL
SETD2	29072	genome.wustl.edu	37	3	47163446	47163446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014159.6	-1	reviewed	p.S894G	0.678	304	0.3%	187	34.2%	17	47%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
KIF9	64147	genome.wustl.edu	37	3	47308696	47308696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134878.1	-1	validated	p.H217Y	1.000	496	0.2%	296	24.7%	1	0%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLHL18	23276	genome.wustl.edu	37	3	47384290	47384290	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025010.4	+1	validated	p.G436	0.966	256	0%	135	27.4%	12	33.3%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SCAP	22937	genome.wustl.edu	37	3	47465449	47465449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.L375R	0.997	36	0%	17	23.5%	57	22.8%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Multidrug efflux transporter AcrB transmembrane domain
SCAP	22937	genome.wustl.edu	37	3	47484449	47484449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.S12Y	1.000	213	0%	136	25.7%	24	58.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SMARCC1	6599	genome.wustl.edu	37	3	47663796	47663796	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003074.3	-1	validated	p.S894	0.984	463	0%	324	25.6%	100	37%	-	-	-	NULL
DHX30	22907	genome.wustl.edu	37	3	47891046	47891046	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	e18+2	0.996	83	0%	49	16.3%	16	100%	-	-	-	-
CDC25A	993	genome.wustl.edu	37	3	48215850	48215850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001789.2	-1	reviewed	p.P285H	0.000	211	0%	122	32%	8	62.5%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_M-inducer_phosp
FBXW12	285231	genome.wustl.edu	37	3	48422270	48422270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207102.2	+1	validated	p.A285T	0.000	377	0%	209	17.2%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_WD40_like
PLXNB1	5364	genome.wustl.edu	37	3	48451074	48451074	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130082.1	-1	validated	p.P1948	0.078	59	0%	20	40%	24	45.8%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
CCDC51	79714	genome.wustl.edu	37	3	48474284	48474284	+	Missense_Mutation	SNP	C	C	T	rs185891886	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024661.3	-1	validated	p.R257H	0.164	182	0%	97	36.1%	25	28%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ATRIP	84126	genome.wustl.edu	37	3	48501592	48501592	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130384.1	+1	reviewed	p.N380I	0.007	84	1.2%	33	24.2%	17	41.1%	possibly_damaging(0.613)	tolerated(0.06)	deleterious(0.535)	NULL
COL7A1	1294	genome.wustl.edu	37	3	48607324	48607324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.R2504C	0.997	57	0%	38	21.1%	1	0%	unknown(0)	deleterious(0.03)	-	HMMPfam_Collagen
COL7A1	1294	genome.wustl.edu	37	3	48607591	48607591	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.G2487	0.991	43	0%	37	37.8%	1	100%	-	-	-	HMMPfam_Collagen
COL7A1	1294	genome.wustl.edu	37	3	48610469	48610469	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.G2245	1.000	211	0%	93	19.4%	2	0%	-	-	-	HMMPfam_Collagen
CELSR3	1951	genome.wustl.edu	37	3	48699614	48699614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.S152G	0.000	192	0%	104	28.8%	0	-	benign(0.04)	deleterious(0)	neutral(0.447)	NULL
PRKAR2A	5576	genome.wustl.edu	37	3	48810497	48810497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004157.2	-1	reviewed	p.S196Y	0.992	436	0%	273	26.7%	19	26.3%	benign(0.001)	tolerated(1)	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
C3orf71	646450	genome.wustl.edu	37	3	48955765	48955765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123040.1	-1	predicted	p.S273N	0.000	72	0%	30	16.7%	2	0%	unknown(0)	-	-	NULL
CCDC71	64925	genome.wustl.edu	37	3	49201265	49201265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022903.3	-1	validated	p.A126V	1.000	38	0%	28	25%	28	32.1%	unknown(0)	deleterious(0.01)	-	NULL
USP4	7375	genome.wustl.edu	37	3	49337971	49337971	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431357	-1	known	p.T219I	0.997	173	0%	85	17.6%	27	29.6%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
RHOA	387	genome.wustl.edu	37	3	49412953	49412953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001664.2	-1	validated	p.V24F	1.000	320	0%	194	27.3%	588	40.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TCTA	6988	genome.wustl.edu	37	3	49449989	49449989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022171.2	+1	validated	p.L44M	1.000	59	0%	22	18.2%	18	22.2%	possibly_damaging(0.896)	tolerated(0.21)	neutral(0.397)	NULL
BSN	8927	genome.wustl.edu	37	3	49688326	49688326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.K600N	0.126	163	0%	62	30.6%	0	-	possibly_damaging(0.812)	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49689743	49689743	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.T918	0.000	43	0%	19	21.1%	0	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49690888	49690889	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.M1301fs	0.999:0.684	-	-	-	-	-	-	-	-	-	NULL
BSN	8927	genome.wustl.edu	37	3	49694436	49694436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.A2483T	0.902	23	0.000	8	0.500	0	-	unknown(0)	-	-	NULL
IP6K1	9807	genome.wustl.edu	37	3	49764800	49764800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153273.3	-1	reviewed	p.L361M	0.140	52	0%	27	37%	25	24%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_IPK,superfamily_SAICAR synthase-like
UBA7	7318	genome.wustl.edu	37	3	49846847	49846847	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003335.2	-1	reviewed	p.Q713	0.984	123	0%	62	29%	7	0%	-	-	-	superfamily_MoeB
UBA7	7318	genome.wustl.edu	37	3	49850711	49850711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003335.2	-1	reviewed	p.I111V	0.996	71	0%	44	11.4%	3	0%	benign(0.228)	tolerated(0.07)	neutral(0.342)	HMMPfam_ThiF,superfamily_MoeB
CAMKV	79012	genome.wustl.edu	37	3	49898420	49898420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480398	-1	known	p.T109A	0.997	82	0%	34	17.6%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
RBM6	10180	genome.wustl.edu	37	3	50097147	50097147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005777.2	+1	validated	p.M732I	1.000	162	0%	83	31.3%	37	45.9%	benign(0.261)	deleterious(0.03)	neutral(0.392)	superfamily_SSF54928
RBM6	10180	genome.wustl.edu	37	3	50114523	50114523	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436550	+1	known	p.C192*	1.000	109	0%	60	43.3%	18	55.5%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
SEMA3B	7869	genome.wustl.edu	37	3	50308389	50308389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004636.2	+1	reviewed	p.R133Q	0.823	16	0%	12	33.3%	4	50%	unknown(0)	-	-	NULL
IFRD2	7866	genome.wustl.edu	37	3	50326062	50326062	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006764.4	-1	validated	p.Y432	0.000	87	0%	35	20%	93	54.8%	-	-	-	NULL
RASSF1	11186	genome.wustl.edu	37	3	50369083	50369083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170714.1	-1	reviewed	p.R227C	0.062	92	0%	30	40%	36	38.8%	probably_damaging(0.983)	-	-	HMMPfam_RA,HMMSmart_SM00314
NPRL2	10641	genome.wustl.edu	37	3	50385825	50385825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006545.4	-1	validated	p.C246Y	1.000	46	0%	15	33.3%	31	35.4%	possibly_damaging(0.482)	tolerated(0.11)	neutral(0.431)	HMMPfam_NPR2
HEMK1	51409	genome.wustl.edu	37	3	50617573	50617573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016173.3	+1	validated	p.R298M	0.447	76	0%	39	28.2%	23	43.4%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	superfamily_SSF53335
CISH	1154	genome.wustl.edu	37	3	50645823	50645823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013324.5	-1	reviewed	p.F91L	1.000	28	0%	18	22.2%	36	36.1%	benign(0.078)	deleterious(0.02)	neutral(0.389)	superfamily_SH2 domain
DOCK3	1795	genome.wustl.edu	37	3	51264817	51264817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.P494L	1.000	418	0%	272	26.5%	0	-	benign(0.194)	tolerated(0.59)	neutral(0.022)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51264836	51264836	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.F500	1.000	383	0%	253	33.6%	0	-	-	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51297588	51297588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.A729V	1.000	70	0%	67	32.8%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51457674	51457674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	p.A864V	0.921	199	0%	98	31.6%	18	16.6%	benign(0.071)	tolerated(0.33)	neutral(0.029)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51459778	51459778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	p.G598E	1.000	85	0%	47	21.3%	10	20%	possibly_damaging(0.903)	tolerated(0.15)	deleterious(0.599)	superfamily_ARM repeat
RAD54L2	23132	genome.wustl.edu	37	3	51691620	51691620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015106.2	+1	validated	p.S1084N	1.000	36	0%	21	23.8%	9	22.2%	benign(0.052)	deleterious(0.04)	neutral(0.352)	NULL
PARP3	10039	genome.wustl.edu	37	3	51982484	51982484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003931.2	+1	reviewed	p.E537D	0.981	144	0%	77	24.7%	8	0%	probably_damaging(0.953)	tolerated(0.06)	deleterious(0.719)	HMMPfam_PARP,superfamily_SSF56399
LOC100287670	100287670	genome.wustl.edu	37	3	52003384	52003384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342337.1	+1	model	p.R13C	0.000	64	0%	29	34.5%	59	37.2%	-	-	-	NULL
ALAS1	211	genome.wustl.edu	37	3	52245450	52245450	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493402	+1	known	p.A91V	0.005	189	0%	95	33.7%	121	45.4%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ALAS1	211	genome.wustl.edu	37	3	52246344	52246344	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493402	+1	known	p.Q154*	1.000	1282	0.1%	630	27.1%	169	44.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
TWF2	11344	genome.wustl.edu	37	3	52265981	52265981	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007284.3	-1	reviewed	p.A87	1.000	51	0%	33	33.3%	95	35.7%	-	-	-	HMMPfam_Cofilin_ADF,HMMSmart_ADF,superfamily_SSF55753
DNAH1	25981	genome.wustl.edu	37	3	52398930	52398930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.V1805M	0.708	82	0%	26	26.9%	3	33.3%	benign(0.103)	tolerated(0.07)	neutral(0.327)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52402763	52402763	+	Silent	SNP	C	C	T	rs187752630	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.D1924	0.993	101	0%	44	43.2%	0	-	-	-	-	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
BAP1	8314	genome.wustl.edu	37	3	52439173	52439173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004656.2	-1	reviewed	p.L357M	1.000	86	0%	32	40.6%	47	36.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEMA3G	56920	genome.wustl.edu	37	3	52472968	52472968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020163.1	-1	provisional	p.P493S	0.986	99	0%	45	24.4%	5	20%	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
NISCH	11188	genome.wustl.edu	37	3	52522349	52522349	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007184.3	+1	validated	p.P947	0.255	47	0%	22	18.2%	73	42.4%	-	-	-	NULL
ITIH1	3697	genome.wustl.edu	37	3	52819170	52819170	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002215.2	+1	reviewed	p.G506	1.000	166	0.6%	111	27%	0	-	-	-	-	NULL
ITIH3	3699	genome.wustl.edu	37	3	52830583	52830583	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002217.3	+1	validated	p.A67	0.015	51	0%	18	33.3%	0	-	-	-	-	HMMSmart_SM00609,HMMPfam_VIT
ITIH3	3699	genome.wustl.edu	37	3	52835099	52835099	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002217.3	+1	validated	p.A440	0.996	190	0%	93	12.9%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ITIH3	3699	genome.wustl.edu	37	3	52836380	52836380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002217.3	+1	validated	p.L472M	1.000	55	0%	34	26.5%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_vWA-like
ITIH3	3699	genome.wustl.edu	37	3	52836749	52836749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002217.3	+1	validated	p.R546W	0.317	85	0%	31	32.3%	0	-	possibly_damaging(0.835)	deleterious(0.04)	deleterious(0.667)	NULL
ITIH4	3700	genome.wustl.edu	37	3	52858579	52858579	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441637	-1	known	p.P151T	0.014	58	0%	20	25%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
SFMBT1	51460	genome.wustl.edu	37	3	52941615	52941615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005158.1	-1	reviewed	p.R681C	1.000	262	0%	153	34%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SFMBT1	51460	genome.wustl.edu	37	3	52945098	52945098	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005158.1	-1	reviewed	p.C609	1.000	160	0%	99	29.3%	5	80%	-	-	-	NULL
RFT1	91869	genome.wustl.edu	37	3	53126518	53126518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052859.3	-1	reviewed	p.R442Q	1.000	53	0%	29	34.5%	42	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rft-1
TKT	7086	genome.wustl.edu	37	3	53263130	53263130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001064.2	-1	validated	p.A430T	1.000	106	0%	54	35.2%	353	45.8%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
DCP1A	55802	genome.wustl.edu	37	3	53322206	53322206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461753	-1	known	p.G514R	0.015	89	0%	29	13.8%	10	10%	-	-	-	NULL
CACNA1D	776	genome.wustl.edu	37	3	53757498	53757498	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.C588	0.551	229	0%	103	26.2%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53835235	53835235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.P1751S	1.000	371	0%	192	25%	1	100%	benign(0.03)	tolerated(0.52)	neutral(0.010)	NULL
CACNA1D	776	genome.wustl.edu	37	3	53836179	53836179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.R1825H	1.000	445	0%	249	28.5%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	54925478	54925478	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	e25+1	1.000	137	0.7%	82	26.8%	0	-	-	-	-	-
LRTM1	57408	genome.wustl.edu	37	3	54959126	54959126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020678.2	-1	provisional	p.A42T	0.971	148	0%	85	28.2%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	superfamily_L domain-like
CACNA2D3	55799	genome.wustl.edu	37	3	55003826	55003826	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	e29-1	1.000	68	0%	37	21.6%	0	-	-	-	-	-
ERC2	26059	genome.wustl.edu	37	3	56183149	56183149	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000492584	-1	known	p.S26L	0.902	109	0%	114	32.5%	0	-	-	-	-	HMMPfam_Cast
ERC2	26059	genome.wustl.edu	37	3	56468774	56468774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015576.1	-1	validated	p.R88*	1.000	833	0.1%	418	27.8%	0	-	-	-	-	NULL
CCDC66	285331	genome.wustl.edu	37	3	56600665	56600665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141947.1	+1	validated	p.K196N	0.990	177	0%	83	25.3%	3	0%	possibly_damaging(0.586)	tolerated(0.1)	deleterious(0.488)	NULL
FAM208A	23272	genome.wustl.edu	37	3	56674137	56674137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112736.1	-1	validated	p.N881D	0.997	156	0%	96	28.1%	18	44.4%	possibly_damaging(0.942)	tolerated(0.18)	neutral(0.443)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57130477	57130477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017563.3	-1	validated	p.A722S	1.000	168	0%	67	14.9%	16	50%	possibly_damaging(0.454)	deleterious(0.04)	deleterious(0.497)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57132013	57132013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017563.3	-1	validated	p.R573H	0.017	66	0%	32	18.8%	4	50%	benign(0.002)	tolerated(0.43)	neutral(0.013)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57132517	57132517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017563.3	-1	validated	p.R405I	0.980	353	0%	221	17.6%	5	20%	possibly_damaging(0.816)	tolerated(0.54)	neutral(0.316)	HMMPfam_SEFIR
HESX1	8820	genome.wustl.edu	37	3	57232813	57232813	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003865.2	-1	reviewed	p.R109*	1.000	886	0.1%	565	29%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
FLNB	2317	genome.wustl.edu	37	3	57994544	57994544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.E85K	1.000	100	0%	44	25%	9	77.7%	possibly_damaging(0.654)	tolerated(0.28)	neutral(0.262)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
FLNB	2317	genome.wustl.edu	37	3	58067394	58067394	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.D226	0.985	299	0%	168	26.2%	11	18.1%	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
FLNB	2317	genome.wustl.edu	37	3	58083668	58083668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.A371T	1.000	189	0%	127	28.3%	15	73.3%	possibly_damaging(0.875)	deleterious(0.01)	deleterious(0.746)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
FLNB	2317	genome.wustl.edu	37	3	58090887	58090887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.V564A	0.972	151	0.7%	88	34.1%	7	14.2%	benign(0.413)	tolerated(0.06)	neutral(0.456)	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
C3orf67	200844	genome.wustl.edu	37	3	58923425	58923425	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000468415	-1	known	p.S114	0.995	234	0.4%	162	26.5%	4	25%	-	-	-	HMMPfam_DUF667
CADPS	8618	genome.wustl.edu	37	3	62467428	62467428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.P1048L	1.000	259	0%	143	24.5%	0	-	benign(0.15)	deleterious(0.02)	neutral(0.396)	NULL
CADPS	8618	genome.wustl.edu	37	3	62522232	62522232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.G664V	1.000	694	0%	534	24.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CADPS	8618	genome.wustl.edu	37	3	62543175	62543175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.T553M	1.000	300	0.3%	204	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CADPS	8618	genome.wustl.edu	37	3	62739250	62739250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.R252W	0.994	148	0%	76	22.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
CADPS	8618	genome.wustl.edu	37	3	62751616	62751616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.A162V	1.000	386	0%	194	24.7%	0	-	possibly_damaging(0.614)	deleterious(0.03)	deleterious(0.578)	NULL
ATXN7	6314	genome.wustl.edu	37	3	63973901	63973901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128149.2	+1	reviewed	p.T421M	0.472	613	0%	286	31.8%	10	30%	possibly_damaging(0.884)	deleterious(0.03)	deleterious(0.710)	NULL
ATXN7	6314	genome.wustl.edu	37	3	63981399	63981399	+	Missense_Mutation	SNP	C	C	T	rs138640161	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128149.2	+1	reviewed	p.A634V	0.992	513	0%	277	28.5%	14	35.7%	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	NULL
ATXN7	6314	genome.wustl.edu	37	3	63981798	63981798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128149.2	+1	reviewed	p.A767V	0.996	193	0%	100	23%	12	58.3%	benign(0.011)	tolerated(0.06)	neutral(0.323)	NULL
PRICKLE2	166336	genome.wustl.edu	37	3	64085170	64085170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198859.3	-1	validated	p.A698T	1.000	92	0%	36	38.9%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PRICKLE2	166336	genome.wustl.edu	37	3	64138934	64138934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198859.3	-1	validated	p.K237N	1.000	290	0%	212	18.4%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716
ADAMTS9	56999	genome.wustl.edu	37	3	64587824	64587824	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000481060	-1	known	p.T327M	0.876	236	0%	113	28.3%	2	100%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS9	56999	genome.wustl.edu	37	3	64592641	64592641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182920.1	-1	reviewed	p.T1157A	0.999	294	0%	205	32.7%	3	0%	possibly_damaging(0.433)	tolerated(0.3)	neutral(0.169)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAGI1	9223	genome.wustl.edu	37	3	65367589	65367589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460329	-1	known	p.T795M	0.969	151	0%	73	26%	9	66.6%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI1	9223	genome.wustl.edu	37	3	65367700	65367700	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460329	-1	known	p.T758M	0.814	212	0%	124	21%	19	26.3%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MAGI1	9223	genome.wustl.edu	37	3	65456088	65456088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033057.1	-1	reviewed	p.A277T	0.004	258	0%	159	29.6%	10	40%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00072
MAGI1	9223	genome.wustl.edu	37	3	65464296	65464296	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033057.1	-1	reviewed	p.D243A	1.000	333	0%	201	15.9%	14	7.1%	benign(0.407)	tolerated(0.25)	neutral(0.169)	HMMSmart_SM00072
LRIG1	26018	genome.wustl.edu	37	3	66444554	66444554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.L460M	0.865	49	0%	30	16.7%	126	49.2%	probably_damaging(0.953)	tolerated(0.22)	neutral(0.439)	HMMSmart_SM00082,superfamily_L domain-like
SUCLG2	8801	genome.wustl.edu	37	3	67578566	67578566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.K136R	1.000	123	0%	75	17.3%	29	20.6%	benign(0.014)	tolerated(0.77)	neutral(0.002)	HMMPfam_ATP-grasp_2,superfamily_SSF56059
C3orf64	285203	genome.wustl.edu	37	3	69027549	69027549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173654.1	-1	provisional	p.A374T	1.000	314	0%	191	29.8%	16	25%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
C3orf64	285203	genome.wustl.edu	37	3	69058988	69058988	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173654.1	-1	provisional	p.L4	0.989	106	0%	52	32.7%	2	0%	-	-	-	NULL
LMOD3	56203	genome.wustl.edu	37	3	69168123	69168123	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198271.3	-1	validated	p.P461	0.241	145	0%	99	28.3%	1	0%	-	-	-	NULL
FOXP1	27086	genome.wustl.edu	37	3	71027069	71027069	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032682.4	-1	reviewed	p.G420C	1.000	112	0%	53	13.2%	16	25%	probably_damaging(0.958)	deleterious(0.02)	deleterious(0.784)	NULL
EBLN2	55096	genome.wustl.edu	37	3	73111728	73111728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018029.3	+1	provisional	p.S166G	0.001	241	0%	140	27.1%	1	0%	possibly_damaging(0.888)	tolerated(0.17)	neutral(0.406)	HMMPfam_BDV_P40,superfamily_P40_nucleoprot_BD-vir
PDZRN3	23024	genome.wustl.edu	37	3	73433546	73433546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015009.1	-1	provisional	p.S724N	1.000	27	0%	17	41.2%	17	35.2%	benign(0.218)	tolerated(0.29)	neutral(0.051)	NULL
CNTN3	5067	genome.wustl.edu	37	3	74414825	74414825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.K325N	0.000	567	0%	355	30.1%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CNTN3	5067	genome.wustl.edu	37	3	74535705	74535705	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.I87S	0.001	515	0%	365	28.8%	1	0%	benign(0.001)	tolerated(1)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ROBO2	6092	genome.wustl.edu	37	3	77637907	77637907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002942.3	+1	reviewed	p.R836C	1.000	93	0%	74	35.1%	4	0%	probably_damaging(0.968)	tolerated(0.09)	deleterious(0.706)	superfamily_Fibronectin type III
ROBO1	6091	genome.wustl.edu	37	3	78680401	78680401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.G1179D	1.000	108	0%	72	34.7%	28	50%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
ROBO1	6091	genome.wustl.edu	37	3	78987846	78987846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002941.3	-1	reviewed	p.G135V	1.000	169	0%	93	12.9%	7	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CADM2	253559	genome.wustl.edu	37	3	86114881	86114881	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153184.3	+1	validated	e9+1	1.000	102	0%	67	28.4%	0	-	-	-	-	-
ZNF654	55279	genome.wustl.edu	37	3	88189439	88189439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018293.2	+1	validated	p.P327S	1.000	286	0%	220	28.2%	12	25%	benign(0.008)	tolerated(0.17)	neutral(0.059)	NULL
C3orf38	285237	genome.wustl.edu	37	3	88202394	88202394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318887	+1	known	p.I50V	1.000	155	0%	82	28%	23	43.4%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
EPHA3	2042	genome.wustl.edu	37	3	89259220	89259220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.L122M	1.000	485	0%	336	29.2%	0	-	benign(0.009)	tolerated(0.08)	neutral(0.300)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHA3	2042	genome.wustl.edu	37	3	89259655	89259655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005233.5	+1	reviewed	p.G267C	1.000	714	0.1%	462	25.1%	2	50%	possibly_damaging(0.823)	deleterious(0.01)	deleterious(0.717)	PatternScan_EGF_2
PROS1	5627	genome.wustl.edu	37	3	93593098	93593098	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.K674	0.000	189	0%	141	9.9%	1	0%	-	-	-	NULL
PROS1	5627	genome.wustl.edu	37	3	93617408	93617408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.D245Y	1.000	162	0%	106	21.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF_CA,PatternScan_EGF_CA
PROS1	5627	genome.wustl.edu	37	3	93624961	93624961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000313.3	-1	reviewed	p.P125S	1.000	326	0%	169	12.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
LOC391556	391556	genome.wustl.edu	37	3	96285232	96285232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342412.1	+1	model	p.A11V	0.997	47	0%	44	27.3%	0	-	-	-	-	NULL
EPHA6	285220	genome.wustl.edu	37	3	96706208	96706208	+	Missense_Mutation	SNP	G	G	T	rs192891419	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080448.2	+1	provisional	p.R162M	0.989	488	0%	291	24.7%	6	66.6%	possibly_damaging(0.702)	tolerated(0.15)	deleterious(0.493)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHA6	285220	genome.wustl.edu	37	3	97167542	97167542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080448.2	+1	provisional	p.S621I	1.000	261	0.4%	173	31.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,superfamily_Fibronectin type III
ARL6	84100	genome.wustl.edu	37	3	97499519	97499519	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032146.3	+1	reviewed	p.H82	1.000	213	0%	177	25.4%	8	12.5%	-	-	-	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
CRYBG3	131544	genome.wustl.edu	37	3	97596331	97596331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.I150T	0.243	403	0%	306	27.8%	10	40%	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
CRYBG3	131544	genome.wustl.edu	37	3	97662118	97662118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153605.2	+1	validated	p.E1010V	1.000	151	0.7%	129	25.6%	18	11.1%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MINA	84864	genome.wustl.edu	37	3	97686377	97686377	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042533.1	-1	validated	p.Q21*	0.996	215	0%	116	29.3%	24	62.5%	-	-	-	superfamily_Clavaminate synthase-like
GABRR3	200959	genome.wustl.edu	37	3	97711870	97711870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329044	-1	known	p.M82I	1.000	334	0%	228	28.1%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
OR5H14	403273	genome.wustl.edu	37	3	97868882	97868882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005514.1	+1	provisional	p.Y218C	0.103	200	0%	194	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DCBLD2	131566	genome.wustl.edu	37	3	98600482	98600482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080927.3	-1	validated	p.R112H	1.000	1015	0.1%	659	26.4%	3	66.6%	benign(0.016)	tolerated(0.57)	neutral(0.007)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FILIP1L	11259	genome.wustl.edu	37	3	99568391	99568392	+	In_Frame_Ins	INS	-	-	CTT	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.710in_frame_insE	0.999:1.000	-	-	-	-	-	-	-	-	-	superfamily_Prefoldin
FILIP1L	11259	genome.wustl.edu	37	3	99568669	99568669	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.A617	0.000	735	0%	537	25.5%	14	0%	-	-	-	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99568997	99568997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.S508I	1.000	271	0.4%	223	23.8%	6	0%	benign(0.429)	tolerated(0.18)	neutral(0.196)	HMMPfam_CortBP2
FILIP1L	11259	genome.wustl.edu	37	3	99569205	99569205	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.Q439*	1.000	609	0%	463	29.6%	9	0%	-	-	-	superfamily_Prefoldin,HMMPfam_CortBP2
C3orf26	84319	genome.wustl.edu	37	3	99895255	99895255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032359.3	+1	validated	p.P251L	1.000	193	0%	94	24.5%	39	46.1%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
TBC1D23	55773	genome.wustl.edu	37	3	100002485	100002485	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018309.2	+1	validated	p.E102	0.785	121	0%	82	32.9%	15	66.6%	-	-	-	HMMSmart_SM00164
TMEM45A	55076	genome.wustl.edu	37	3	100277385	100277385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018004.1	+1	provisional	p.E180D	1.000	498	0%	301	29.6%	19	36.8%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	HMMPfam_DUF716
GPR128	84873	genome.wustl.edu	37	3	100387911	100387911	+	Missense_Mutation	SNP	G	G	A	rs116022671	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032787.2	+1	validated	p.V700I	0.000	198	0%	105	19%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_7tm_2
SENP7	57337	genome.wustl.edu	37	3	101066848	101066848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020654.3	-1	validated	p.R569W	1.000	942	0.2%	669	22.6%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101390820	101390820	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	e2+2	1.000	179	0%	102	28.4%	4	50%	-	-	-	-
CEP97	79598	genome.wustl.edu	37	3	101484047	101484047	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024548.2	+1	provisional	p.D750	0.095	473	0%	336	30.4%	1	0%	-	-	-	NULL
NFKBIZ	64332	genome.wustl.edu	37	3	101574703	101574703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031419.2	+1	reviewed	p.T594I	1.000	204	0%	98	29.6%	14	35.7%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Ank,superfamily_Ankyrin repeat
NFKBIZ	64332	genome.wustl.edu	37	3	101575938	101575938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031419.2	+1	reviewed	p.A616T	1.000	450	0%	241	30.7%	17	23.5%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BBX	56987	genome.wustl.edu	37	3	107492433	107492433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142568.1	+1	validated	p.T622N	1.000	263	0%	179	31.8%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IFT57	55081	genome.wustl.edu	37	3	107910482	107910482	+	Silent	SNP	G	G	A	rs182941979	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018010.3	-1	validated	p.N221	0.930	162	0.6%	150	32.7%	44	27.2%	-	-	-	HMMPfam_IFT57
MYH15	22989	genome.wustl.edu	37	3	108188907	108188907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.C532	1.000	344	0%	263	33.5%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1524	57650	genome.wustl.edu	37	3	108308220	108308220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.M1I	1.000	25	0%	17	23.5%	3	100%	possibly_damaging(0.643)	deleterious(0.03)	deleterious(0.590)	NULL
DZIP3	9666	genome.wustl.edu	37	3	108380779	108380779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014648.3	+1	validated	p.A752V	0.992	317	0%	241	14.1%	5	20%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
TRAT1	50852	genome.wustl.edu	37	3	108568064	108568064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016388.2	+1	validated	p.S89Y	0.017	256	0%	178	28.1%	0	-	possibly_damaging(0.861)	tolerated(0.08)	deleterious(0.633)	NULL
TRAT1	50852	genome.wustl.edu	37	3	108572525	108572525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016388.2	+1	validated	p.R121H	0.665	255	0%	166	33.7%	0	-	benign(0.008)	tolerated(0.39)	neutral(0.016)	NULL
MORC1	27136	genome.wustl.edu	37	3	108725918	108725918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014429.3	-1	reviewed	p.D575	0.000	249	0%	154	28.6%	0	-	-	-	-	NULL
MORC1	27136	genome.wustl.edu	37	3	108778652	108778652	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014429.3	-1	reviewed	e12+1	1.000	242	0%	153	34.6%	0	-	-	-	-	-
PHLDB2	90102	genome.wustl.edu	37	3	111604254	111604254	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.R444*	1.000	205	0.5%	132	21.2%	0	-	-	-	-	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111658393	111658393	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.S734	1.000	286	0%	193	31.1%	2	50%	-	-	-	NULL
TAGLN3	29114	genome.wustl.edu	37	3	111719782	111719782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008272.1	+1	validated	p.D115G	1.000	309	0%	177	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
TAGLN3	29114	genome.wustl.edu	37	3	111732301	111732301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008272.1	+1	validated	p.R168H	1.000	58	0%	34	32.4%	0	-	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
GCET2	257144	genome.wustl.edu	37	3	111851960	111851960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152785.3	-1	reviewed	p.N3fs	0.815	-	-	-	-	-	-	-	-	-	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111927031	111927031	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.L660	0.238	403	0%	276	32.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SLC9A10	285335	genome.wustl.edu	37	3	111997588	111997588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.K102N	0.870	242	0%	159	25.2%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	HMMPfam_Na_H_Exchanger
ATG3	64422	genome.wustl.edu	37	3	112255446	112255446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022488.3	-1	provisional	p.R224W	1.000	217	0.9%	139	37.4%	93	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Autophagy_act_C
CCDC80	151887	genome.wustl.edu	37	3	112324324	112324324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199511.1	-1	validated	p.Q931H	1.000	185	0%	109	29.4%	21	0%	unknown(0)	deleterious(0)	-	NULL
C3orf17	25871	genome.wustl.edu	37	3	112732855	112732855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015412.3	-1	validated	p.K96E	0.998	565	0%	327	30%	12	25%	benign(0.181)	tolerated(0.18)	neutral(0.073)	NULL
C3orf17	25871	genome.wustl.edu	37	3	112736447	112736447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015412.3	-1	validated	p.L37F	0.000	378	0%	232	22.4%	4	50%	possibly_damaging(0.635)	tolerated(0.16)	neutral(0.281)	NULL
BOC	91653	genome.wustl.edu	37	3	112998237	112998237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033254.2	+1	validated	p.W652L	1.000	58	0%	28	28.6%	13	7.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BOC	91653	genome.wustl.edu	37	3	113002257	113002257	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033254.2	+1	validated	e14-1	1.000	322	0.3%	193	22.8%	0	-	-	-	-	-
SPICE1	152185	genome.wustl.edu	37	3	113187080	113187080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144718.3	-1	validated	p.R354H	0.728	267	0.4%	176	21.6%	7	42.8%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113378168	113378168	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.L787	0.803	237	0%	172	25.6%	0	-	-	-	-	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113379553	113379553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.D326N	0.000	423	0%	277	34.7%	0	-	benign(0.076)	tolerated(0.8)	neutral(0.006)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113380103	113380103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.Q142H	0.393	585	0%	375	31.2%	1	100%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113393718	113393718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.E3G	1.000	690	0%	404	30.7%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113724408	113724408	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020817.1	-1	predicted	p.H605	0.001	268	0%	183	29%	4	75%	-	-	-	NULL
QTRTD1	79691	genome.wustl.edu	37	3	113789536	113789536	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024638.2	+1	provisional	p.Q133*	1.000	700	0%	432	28%	12	8.3%	-	-	-	HMMPfam_TGT,superfamily_tRNA_ribo_trans
DRD3	1814	genome.wustl.edu	37	3	113878617	113878617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000796.3	-1	reviewed	p.A123V	1.000	200	0.5%	130	27.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ZBTB20	26137	genome.wustl.edu	37	3	114058137	114058137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015642.4	-1	validated	p.S574R	1.000	213	0%	128	25%	0	-	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
GAP43	2596	genome.wustl.edu	37	3	115395341	115395341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130064.1	+1	reviewed	p.P207H	1.000	63	0%	43	27.9%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Neuromodulin
ARHGAP31	57514	genome.wustl.edu	37	3	119109721	119109721	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.L258	1.000	145	0%	81	38.3%	2	0%	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119121120	119121120	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.T507	0.998	170	0%	91	34.1%	2	0%	-	-	-	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119134413	119134413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.P1213S	1.000	354	0%	202	27.7%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119134757	119134757	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.E1327	1.000	895	0%	463	29.8%	5	0%	-	-	-	NULL
TMEM39A	55254	genome.wustl.edu	37	3	119153682	119153682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018266.1	-1	provisional	p.S387N	1.000	295	0%	185	30.3%	54	40.7%	probably_damaging(0.978)	tolerated(0.52)	neutral(0.429)	HMMPfam_Tmp39
C3orf15	89876	genome.wustl.edu	37	3	119449081	119449081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033364.3	+1	validated	p.R292H	1.000	665	0%	425	11.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C3orf15	89876	genome.wustl.edu	37	3	119459504	119459504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033364.3	+1	validated	p.L548M	0.889	124	0.8%	92	27.2%	2	0%	possibly_damaging(0.918)	tolerated(0.16)	neutral(0.428)	NULL
NR1I2	8856	genome.wustl.edu	37	3	119531539	119531539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022002.2	+1	reviewed	p.G215R	0.003	189	0%	69	24.6%	0	-	benign(0.003)	tolerated(0.29)	neutral(0.029)	superfamily_Str_ncl_receptor
GTF2E1	2960	genome.wustl.edu	37	3	120500038	120500038	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005513.2	+1	validated	p.T347	0.000	294	0%	193	16.6%	10	40%	-	-	-	NULL
STXBP5L	9515	genome.wustl.edu	37	3	121126130	121126130	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014980.2	+1	validated	p.S900	1.000	126	0%	99	12.1%	0	-	-	-	-	NULL
POLQ	10721	genome.wustl.edu	37	3	121186433	121186433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.E2300D	0.000	204	0%	139	17.3%	5	20%	probably_damaging(0.971)	tolerated(0.32)	neutral(0.437)	HMMPfam_DNA_pol_A,superfamily_DNA/RNA polymerases
POLQ	10721	genome.wustl.edu	37	3	121238786	121238786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.R467Q	0.001	368	0%	227	31.7%	2	0%	benign(0.009)	tolerated(0.82)	neutral(0.001)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
POLQ	10721	genome.wustl.edu	37	3	121263590	121263590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199420.3	-1	validated	p.K109N	1.000	136	0%	91	34.1%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXO40	51725	genome.wustl.edu	37	3	121340441	121340441	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016298.3	+1	validated	p.Q55	0.598	233	0%	140	17.9%	0	-	-	-	-	superfamily_TRAF domain-like
HCLS1	3059	genome.wustl.edu	37	3	121351365	121351365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005335.4	-1	validated	p.L352I	0.002	442	0.2%	295	18.3%	28	14.2%	benign(0.256)	tolerated(0.93)	neutral(0.026)	NULL
HCLS1	3059	genome.wustl.edu	37	3	121355326	121355326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005335.4	-1	validated	p.K192N	1.000	288	0%	228	22.4%	25	0%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMPfam_HS1_rep
GOLGB1	2804	genome.wustl.edu	37	3	121413688	121413688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.E1889D	0.996	949	0.1%	601	30.8%	18	100%	probably_damaging(0.996)	tolerated(0.3)	deleterious(0.490)	NULL
ILDR1	286676	genome.wustl.edu	37	3	121724181	121724181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.R97W	1.000	51	0%	30	33.3%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,superfamily_SSF48726
CASR	846	genome.wustl.edu	37	3	122002979	122002979	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000388.3	+1	reviewed	p.L726	0.998	164	0%	86	12.8%	0	-	-	-	-	HMMPfam_7tm_3
FAM162A	26355	genome.wustl.edu	37	3	122123104	122123104	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014367.3	+1	validated	e3-1	0.236	119	0%	88	10.2%	1	100%	-	-	-	-
PARP9	83666	genome.wustl.edu	37	3	122255789	122255789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031458.2	-1	validated	p.V668I	0.249	1489	0.1%	895	28.7%	31	35.4%	benign(0.32)	tolerated(0.88)	neutral(0.100)	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP9	83666	genome.wustl.edu	37	3	122255852	122255852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031458.2	-1	validated	p.P647S	0.000	1651	0%	970	15.8%	23	26%	benign(0.344)	tolerated(0.56)	neutral(0.115)	HMMPfam_PARP,superfamily_ADP-ribosylation
DTX3L	151636	genome.wustl.edu	37	3	122287435	122287435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138287.3	+1	validated	p.G167C	0.789	233	0%	132	21.2%	12	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DTX3L	151636	genome.wustl.edu	37	3	122288287	122288287	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138287.3	+1	validated	p.E451*	0.192	435	0%	222	24.3%	11	9%	-	-	-	NULL
PARP15	165631	genome.wustl.edu	37	3	122354665	122354665	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113523.1	+1	validated	p.S585	0.002	401	0%	247	32%	2	0%	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
PARP14	54625	genome.wustl.edu	37	3	122447444	122447444	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017554.2	+1	validated	p.*1802	0.164	484	0%	300	33%	12	16.6%	-	-	-	NULL
DIRC2	84925	genome.wustl.edu	37	3	122591312	122591312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032839.2	+1	reviewed	p.V397M	0.244	316	0%	216	28.2%	6	83.3%	benign(0.291)	tolerated(0.13)	neutral(0.342)	superfamily_MFS general substrate transporter
PDIA5	10954	genome.wustl.edu	37	3	122808056	122808056	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000316218	+1	known	p.S28	0.617	241	0.4%	100	25%	29	86.2%	-	-	-	superfamily_Thiordxn-like_fd
PDIA5	10954	genome.wustl.edu	37	3	122880298	122880298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000316218	+1	known	p.R492H	0.992	148	0.7%	78	14.1%	49	8.1%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
ADCY5	111	genome.wustl.edu	37	3	123036914	123036914	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.S769	0.999	100	0%	32	25%	4	25%	-	-	-	NULL
ADCY5	111	genome.wustl.edu	37	3	123047511	123047511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.M595I	1.000	93	0%	42	16.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,PatternScan_GUANYLATE_CYCLASE_1
CCDC14	64770	genome.wustl.edu	37	3	123634551	123634551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022757.4	-1	validated	p.S605N	1.000	379	0%	222	32.4%	22	31.8%	possibly_damaging(0.896)	tolerated(0.07)	deleterious(0.672)	NULL
ROPN1	54763	genome.wustl.edu	37	3	123694287	123694287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017578.2	-1	provisional	p.R112H	1.000	610	0%	342	17.3%	2	0%	possibly_damaging(0.891)	tolerated(0.14)	deleterious(0.600)	NULL
KALRN	8997	genome.wustl.edu	37	3	123983391	123983391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.G102C	1.000	79	0%	38	21.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00516,superfamily_CRAL/TRIO domain
KALRN	8997	genome.wustl.edu	37	3	124044968	124044968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.R410C	1.000	154	0%	99	32.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124053131	124053131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.A477V	1.000	201	0%	120	19.2%	3	0%	benign(0.007)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00150,superfamily_Spectrin repeat
KALRN	8997	genome.wustl.edu	37	3	124390656	124390656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.P2284T	1.000	326	0%	175	26.9%	1	0%	benign(0.338)	tolerated(0.27)	neutral(0.140)	NULL
KALRN	8997	genome.wustl.edu	37	3	124438023	124438023	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354186	+1	known	p.V2858A	0.998	119	0%	63	28.6%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KALRN	8997	genome.wustl.edu	37	3	124438030	124438030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.V2892I	0.996	125	0%	67	34.3%	1	0%	benign(0.019)	tolerated(1)	neutral(0.001)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITGB5	3693	genome.wustl.edu	37	3	124483248	124483248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002213.3	-1	provisional	p.R765H	1.000	74	0%	47	38.3%	120	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_b_cyt
ZNF148	7707	genome.wustl.edu	37	3	124952147	124952147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.R475W	1.000	388	0%	289	31.8%	26	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ROPN1B	152015	genome.wustl.edu	37	3	125701290	125701290	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012337.1	+1	provisional	e4+2	0.997	163	0%	86	17.4%	0	-	-	-	-	-
SLC41A3	54946	genome.wustl.edu	37	3	125775347	125775347	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008487.1	-1	validated	p.L17	1.000	113	0%	55	20%	0	-	-	-	-	NULL
ALDH1L1	10840	genome.wustl.edu	37	3	125833457	125833457	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012190.2	-1	reviewed	p.G675	0.896	122	0%	65	16.9%	5	0%	-	-	-	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Aldehyde_DH/Histidinol_DH
ALDH1L1	10840	genome.wustl.edu	37	3	125879823	125879823	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000273450	-1	known	p.T10	0.652	69	0%	34	23.5%	2	50%	-	-	-	NULL
ZXDC	79364	genome.wustl.edu	37	3	126160636	126160636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025112.4	-1	validated	p.A789V	0.003	49	0%	16	25%	17	70.5%	possibly_damaging(0.509)	-	-	NULL
UROC1	131669	genome.wustl.edu	37	3	126218932	126218932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144639.2	-1	reviewed	p.G404D	1.000	46	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Urocanase,superfamily_Urocanase
PLXNA1	5361	genome.wustl.edu	37	3	126708273	126708273	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.T256	1.000	76	0%	32	37.5%	11	63.6%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA1	5361	genome.wustl.edu	37	3	126751634	126751634	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.S1827	0.994	34	0%	18	33.3%	20	30%	-	-	-	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
MCM2	4171	genome.wustl.edu	37	3	127335872	127335872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004526.2	+1	reviewed	p.R562W	1.000	99	0%	58	24.1%	58	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
MCM2	4171	genome.wustl.edu	37	3	127336822	127336822	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491422	+1	known	p.T569M	0.959	49	0%	28	42.9%	68	39.7%	-	-	-	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
PODXL2	50512	genome.wustl.edu	37	3	127379566	127379566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015720.2	+1	validated	p.G232D	0.004	169	0%	102	25.5%	125	42.4%	unknown(0)	tolerated(0.36)	-	NULL
KBTBD12	166348	genome.wustl.edu	37	3	127702943	127702943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207335.2	+1	validated	p.R565H	1.000	212	0%	86	18.6%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
CNBP	7555	genome.wustl.edu	37	3	128890121	128890121	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003418.4	-1	reviewed	e3-1	1.000	238	0.4%	115	27%	170	67%	-	-	-	-
COPG1	22820	genome.wustl.edu	37	3	128979599	128979599	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016128.3	+1	validated	p.R359	0.982	168	0.6%	75	29.3%	202	45.5%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
SNORA7B	677797	genome.wustl.edu	37	3	129116060	129116060	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002992.2	-1	provisional	NULL	0.979	296	0%	147	32.7%	1	100%	-	-	-	-
C3orf25	90288	genome.wustl.edu	37	3	129134203	129134203	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326085	-1	known	p.V241	0.510	134	0%	55	25.5%	0	-	-	-	-	superfamily_SSF47473
C3orf25	90288	genome.wustl.edu	37	3	129140304	129140304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326085	-1	known	p.S131I	0.000	241	0.4%	124	27.4%	2	0%	possibly_damaging(0.488)	tolerated(0.09)	neutral(0.459)	NULL
MBD4	8930	genome.wustl.edu	37	3	129152785	129152785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003925.1	-1	reviewed	p.P440H	1.000	244	0%	154	24.7%	28	67.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNA-glycosylase
IFT122	55764	genome.wustl.edu	37	3	129207187	129207187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052985.2	+1	reviewed	p.R698C	1.000	214	0%	110	27.3%	21	61.9%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
RHO	6010	genome.wustl.edu	37	3	129251519	129251519	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000539.3	+1	reviewed	p.G280	0.999	57	0%	29	24.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ASTE1	28990	genome.wustl.edu	37	3	130743508	130743508	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014065.2	-1	validated	p.L215	0.289	217	0%	123	26%	3	33.3%	-	-	-	superfamily_SSF88723
NUDT16	131870	genome.wustl.edu	37	3	131102167	131102167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152395.2	+1	validated	p.K157N	0.009	72	0%	39	15.4%	30	13.3%	unknown(0)	tolerated(0.08)	-	NULL
ACPP	55	genome.wustl.edu	37	3	132061471	132061471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134194.1	+1	reviewed	p.D211N	0.999	361	0%	223	30%	3	66.6%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Acid_phosphat_A,superfamily_SSF53254
DNAJC13	23317	genome.wustl.edu	37	3	132175372	132175372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.R376M	1.000	173	0%	118	18.6%	6	16.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DNAJC13	23317	genome.wustl.edu	37	3	132179925	132179925	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.S530*	1.000	179	0%	100	30%	3	0%	-	-	-	superfamily_ARM repeat
ACAD11	84129	genome.wustl.edu	37	3	132360835	132360835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032169.4	-1	validated	p.A173V	0.000	694	0%	359	25.9%	2	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
TMEM108	66000	genome.wustl.edu	37	3	133098626	133098626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136469.1	+1	validated	p.A24V	0.409	1289	0%	648	26.4%	6	100%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	PatternScan_TONB_DEPENDENT_REC_1
TMEM108	66000	genome.wustl.edu	37	3	133099861	133099861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136469.1	+1	validated	p.A436T	0.991	113	0%	67	31.3%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM108	66000	genome.wustl.edu	37	3	133114804	133114804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136469.1	+1	validated	p.G568*	1.000	129	0%	72	11.1%	1	0%	-	-	-	NULL
TOPBP1	11073	genome.wustl.edu	37	3	133347453	133347453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.A882D	0.003	107	0%	70	22.9%	12	66.6%	benign(0.406)	tolerated(0.63)	neutral(0.134)	NULL
TF	7018	genome.wustl.edu	37	3	133476628	133476628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001063.3	+1	reviewed	p.D296Y	0.007	160	0%	63	31.7%	1	0%	unknown(0)	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
RAB6B	51560	genome.wustl.edu	37	3	133560186	133560186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016577.3	-1	validated	p.L78M	1.000	130	0%	71	18.3%	8	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KY	339855	genome.wustl.edu	37	3	134322546	134322546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178554.4	-1	validated	p.H621N	0.004	167	0%	108	37%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
KY	339855	genome.wustl.edu	37	3	134348501	134348501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178554.4	-1	validated	p.A100V	0.289	26	0%	14	35.7%	0	-	benign(0.344)	deleterious(0.01)	deleterious(0.514)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134911607	134911607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.R691Q	0.999	158	0%	95	32.6%	2	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MSL2	55167	genome.wustl.edu	37	3	135870123	135870123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018133.3	-1	validated	p.I534V	1.000	191	0%	97	15.5%	27	40.7%	possibly_damaging(0.63)	deleterious(0.02)	deleterious(0.603)	NULL
STAG1	10274	genome.wustl.edu	37	3	136287655	136287655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005862.2	-1	reviewed	p.A116T	1.000	94	0%	69	33.3%	9	55.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_ARM-type_fold
ARMC8	25852	genome.wustl.edu	37	3	137982647	137982647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015396.3	+1	validated	p.R387W	1.000	491	0.2%	274	19.7%	24	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_ARM,superfamily_ARM-type_fold
MRAS	22808	genome.wustl.edu	37	3	138091917	138091917	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085049.1	+1	validated	p.D64	0.978	244	0%	170	18.8%	5	20%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ESYT3	83850	genome.wustl.edu	37	3	138191204	138191204	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031913.3	+1	validated	e18-1	1.000	168	0%	97	33%	1	100%	-	-	-	-
CEP70	80321	genome.wustl.edu	37	3	138219239	138219239	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024491.2	-1	validated	e13+2	1.000	513	0%	377	27.1%	2	100%	-	-	-	-
FAIM	55179	genome.wustl.edu	37	3	138340351	138340351	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033030.1	+1	validated	p.S61	0.942	194	0%	134	14.2%	23	26%	-	-	-	HMMPfam_FAIM1
COPB2	9276	genome.wustl.edu	37	3	139077103	139077103	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503326	-1	known	p.W68*	0.974	299	0%	213	31.5%	343	44.6%	benign(0)	tolerated(1)	-	NULL
CLSTN2	64084	genome.wustl.edu	37	3	140140099	140140099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022131.2	+1	validated	p.C257Y	1.000	242	0.4%	169	33.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112
ACPL2	92370	genome.wustl.edu	37	3	141006295	141006295	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037172.1	+1	validated	p.G169*	1.000	367	0.3%	206	28.6%	4	25%	-	-	-	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
RASA2	5922	genome.wustl.edu	37	3	141328318	141328318	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006506.2	+1	reviewed	p.Y762fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TFDP2	7029	genome.wustl.edu	37	3	141724350	141724350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000489671	-1	known	p.T40I	1.000	111	0%	80	31.2%	33	60.6%	benign(0.406)	tolerated(0.52)	neutral(0.139)	NULL
GK5	256356	genome.wustl.edu	37	3	141917682	141917682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039547.2	-1	validated	p.S169T	0.787	231	0%	160	26.9%	7	0%	benign(0.007)	tolerated(1)	-	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
XRN1	54464	genome.wustl.edu	37	3	142095358	142095358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.T932A	1.000	291	0%	246	15.4%	4	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
XRN1	54464	genome.wustl.edu	37	3	142122802	142122802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019001.3	-1	validated	p.R638H	0.997	149	0%	115	12.2%	3	0%	benign(0.005)	tolerated(0.21)	neutral(0.044)	NULL
ATR	545	genome.wustl.edu	37	3	142188237	142188237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.A2165V	1.000	411	0%	340	25.6%	10	10%	benign(0)	tolerated(1)	-	superfamily_ARM repeat
ATR	545	genome.wustl.edu	37	3	142224006	142224006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.R1724M	1.000	446	0.2%	284	15.1%	2	100%	possibly_damaging(0.876)	deleterious(0.03)	deleterious(0.706)	superfamily_ARM repeat,superfamily_TPR-like
ATR	545	genome.wustl.edu	37	3	142281203	142281203	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001184.3	-1	reviewed	p.C347*	0.981	183	0%	125	33.6%	3	33.3%	-	-	-	superfamily_ARM repeat
PCOLCE2	26577	genome.wustl.edu	37	3	142539831	142539831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013363.3	-1	validated	p.V336F	0.251	186	0%	102	12.7%	15	0%	benign(0.006)	deleterious(0.01)	neutral(0.406)	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
PAQR9	344838	genome.wustl.edu	37	3	142681133	142681133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198504.2	-1	validated	p.T349I	1.000	130	0%	59	18.6%	2	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
SLC9A9	285195	genome.wustl.edu	37	3	143297448	143297448	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173653.3	-1	reviewed	p.A291	0.485	232	0%	166	16.3%	0	-	-	-	-	HMMPfam_Na_H_Exchanger
C3orf58	205428	genome.wustl.edu	37	3	143704658	143704658	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173552.3	+1	validated	p.L311	1.000	505	0.2%	306	27.1%	34	55.8%	-	-	-	NULL
PLOD2	5352	genome.wustl.edu	37	3	145788912	145788912	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182943.2	-1	reviewed	p.R680*	0.206	120	0%	104	10.6%	86	1.1%	-	-	-	HMMPfam_2OG-FeII_Oxy,HMMSmart_P4Hc
PLSCR5	389158	genome.wustl.edu	37	3	146307469	146307469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085420.1	-1	validated	p.A250T	1.000	341	0%	287	27.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Scramblase
AGTR1	185	genome.wustl.edu	37	3	148458962	148458962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000685.4	+1	reviewed	p.S47N	1.000	202	0%	123	33.3%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CPB1	1360	genome.wustl.edu	37	3	148558521	148558521	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001871.2	+1	reviewed	p.S107	0.929	228	0%	140	23.6%	0	-	-	-	-	superfamily_Protease propeptides/inhibitors
HLTF	6596	genome.wustl.edu	37	3	148757466	148757466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003071.3	-1	reviewed	p.M839I	1.000	71	0%	42	40.5%	35	28.5%	possibly_damaging(0.633)	tolerated(0.54)	neutral(0.229)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HLTF	6596	genome.wustl.edu	37	3	148781309	148781309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003071.3	-1	reviewed	p.A357T	0.737	161	0%	83	27.7%	24	50%	benign(0.013)	tolerated(0.18)	neutral(0.057)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HPS3	84343	genome.wustl.edu	37	3	148889919	148889919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032383.3	+1	reviewed	p.K975N	0.393	187	0.5%	117	29.1%	34	44.1%	benign(0.313)	tolerated(0.15)	neutral(0.339)	NULL
CP	1356	genome.wustl.edu	37	3	148923990	148923990	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000096.3	-1	reviewed	p.D391	0.254	482	0%	305	23.9%	6	0%	-	-	-	superfamily_Cupredoxins
TM4SF1	4071	genome.wustl.edu	37	3	149093354	149093354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014220.2	-1	reviewed	p.A97S	0.854	251	0%	113	36.3%	63	26.9%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_L6_membrane
RNF13	11342	genome.wustl.edu	37	3	149613269	149613269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007282.4	+1	reviewed	p.A111T	1.000	235	0%	158	29.1%	32	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
TSC22D2	9819	genome.wustl.edu	37	3	150140862	150140862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014779.2	+1	provisional	p.A662V	1.000	276	0%	160	29.4%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ENSG00000198843	0	genome.wustl.edu	37	3	150344832	150344832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361622	+1	known	p.L167F	1.000	154	0%	84	22.6%	165	43.6%	possibly_damaging(0.874)	tolerated(0.56)	neutral(0.346)	HMMPfam_SelT
FAM194A	131831	genome.wustl.edu	37	3	150377907	150377907	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152394.3	-1	validated	p.Y588	0.000	304	0%	162	24.1%	0	-	-	-	-	NULL
GPR171	29909	genome.wustl.edu	37	3	150916434	150916434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013308.3	-1	validated	p.T247I	1.000	246	0%	156	28.2%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
MED12L	116931	genome.wustl.edu	37	3	151090521	151090521	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.Y1242	1.000	293	0%	258	31%	0	-	-	-	-	NULL
MED12L	116931	genome.wustl.edu	37	3	151094661	151094661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.P1341H	1.000	221	0%	117	19.7%	0	-	benign(0.132)	deleterious(0.02)	neutral(0.394)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151154876	151154876	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.L2491	0.870	483	0.2%	273	33.3%	3	33.3%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
IGSF10	285313	genome.wustl.edu	37	3	151166507	151166507	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.D421A	0.118	329	0.3%	214	22%	0	-	possibly_damaging(0.471)	deleterious(0.02)	deleterious(0.538)	NULL
AADAC	13	genome.wustl.edu	37	3	151531999	151531999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001086.2	+1	reviewed	p.Y17H	0.170	185	0%	178	12.4%	3	33.3%	benign(0.211)	deleterious(0.01)	neutral(0.426)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155198928	155198928	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130960.1	-1	validated	p.G1637	0.997	70	0%	20	20%	9	33.3%	-	-	-	NULL
PLCH1	23007	genome.wustl.edu	37	3	155311754	155311754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130960.1	-1	validated	p.A137V	1.000	125	0%	54	29.6%	7	28.5%	benign(0.01)	deleterious(0.03)	neutral(0.365)	NULL
PLCH1	23007	genome.wustl.edu	37	3	155311974	155311974	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130960.1	-1	validated	e3-1	1.000	165	0%	79	41.8%	0	-	-	-	-	-
KCNAB1	7881	genome.wustl.edu	37	3	156175299	156175299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172160.2	+1	reviewed	p.A139T	0.997	308	0%	212	22.2%	1	0%	possibly_damaging(0.704)	deleterious(0)	deleterious(0.698)	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
LEKR1	389170	genome.wustl.edu	37	3	156763369	156763369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004316.2	+1	validated	p.R333C	0.017	265	0%	152	30.3%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
CCNL1	57018	genome.wustl.edu	37	3	156870864	156870864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020307.2	-1	validated	p.K190N	1.000	326	0%	205	27.3%	18	66.6%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
VEPH1	79674	genome.wustl.edu	37	3	156978994	156978994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024621.2	-1	validated	p.L811I	1.000	279	0%	207	35.7%	0	-	possibly_damaging(0.796)	tolerated(0.16)	neutral(0.358)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
VEPH1	79674	genome.wustl.edu	37	3	157099000	157099000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024621.2	-1	validated	p.A358T	0.704	252	0%	157	31.2%	0	-	benign(0.002)	tolerated(1)	-	NULL
VEPH1	79674	genome.wustl.edu	37	3	157178120	157178120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024621.2	-1	validated	p.A127T	0.996	362	0%	265	36.2%	1	0%	benign(0.012)	tolerated(0.67)	neutral(0.003)	NULL
SHOX2	6474	genome.wustl.edu	37	3	157820598	157820598	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006884.3	-1	reviewed	p.R142*	1.000	204	0%	92	25%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SHOX2	6474	genome.wustl.edu	37	3	157823714	157823714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006884.3	-1	reviewed	p.L34M	1.000	25	0%	13	30.8%	0	-	possibly_damaging(0.753)	tolerated(0.11)	deleterious(0.548)	NULL
RSRC1	51319	genome.wustl.edu	37	3	158262054	158262054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016625.2	+1	provisional	p.P332H	1.000	359	0%	244	32.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLF1	4291	genome.wustl.edu	37	3	158315948	158315948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022443.3	+1	validated	p.P120L	0.999	192	0%	136	12.5%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Mlf1IP
GFM1	85476	genome.wustl.edu	37	3	158408050	158408050	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.R670*	1.000	468	0%	301	27.9%	61	24.5%	-	-	-	HMMPfam_EFG_C,superfamily_EFG_III_V
SCHIP1	29970	genome.wustl.edu	37	3	159614533	159614533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000473061	+1	known	p.A91T	1.000	234	0%	132	20.5%	4	0%	-	-	-	HMMPfam_SCHIP-1
IFT80	57560	genome.wustl.edu	37	3	160000380	160000380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020800.1	-1	validated	p.L468M	1.000	104	0%	67	17.9%	8	50%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Cyt_cd1_haem_C
KPNA4	3840	genome.wustl.edu	37	3	160225976	160225976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002268.3	-1	reviewed	p.V431I	1.000	91	0%	46	45.7%	53	81.1%	benign(0.067)	tolerated(0.62)	neutral(0.009)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
SCARNA7	677767	genome.wustl.edu	37	3	160232907	160232907	+	RNA	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003001.1	-1	provisional	NULL	0.940	351	0%	243	30.5%	0	-	-	-	-	-
KPNA4	3840	genome.wustl.edu	37	3	160239644	160239644	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002268.3	-1	reviewed	p.Q276*	1.000	292	0%	177	31.1%	32	3.1%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
ARL14	80117	genome.wustl.edu	37	3	160395411	160395411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025047.2	+1	validated	p.D93Y	0.993	489	0%	275	24.4%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1L	151742	genome.wustl.edu	37	3	160474185	160474185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139245.2	+1	provisional	p.C30Y	1.000	94	0%	38	34.2%	2	50%	possibly_damaging(0.918)	deleterious(0.03)	deleterious(0.733)	NULL
B3GALNT1	8706	genome.wustl.edu	37	3	160803765	160803765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038628.1	-1	reviewed	p.V260I	0.951	232	0%	175	29.1%	38	39.4%	benign(0.018)	tolerated(0.6)	neutral(0.005)	HMMPfam_Galactosyl_T
OTOL1	131149	genome.wustl.edu	37	3	161214716	161214716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080440.1	+1	provisional	p.P41S	0.002	195	0%	132	28.8%	0	-	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
SI	6476	genome.wustl.edu	37	3	164766930	164766930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.A567D	0.922	137	0%	169	11.2%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
SI	6476	genome.wustl.edu	37	3	164786559	164786559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.S145N	0.000	258	0%	189	11.6%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164905988	164905988	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.G877	0.999	256	0%	158	31.6%	0	-	-	-	-	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906343	164906343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.R759H	0.951	242	0%	146	10.3%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907130	164907130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.P497S	1.000	180	0%	106	13.2%	0	-	benign(0.329)	tolerated(0.12)	neutral(0.363)	superfamily_SSF52058
BCHE	590	genome.wustl.edu	37	3	165547333	165547333	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.K497*	1.000	222	0%	219	32%	3	0%	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
BCHE	590	genome.wustl.edu	37	3	165547468	165547468	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.R452*	1.000	393	0%	350	28.6%	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
SERPINI2	5276	genome.wustl.edu	37	3	167159965	167159965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006217.3	-1	reviewed	p.L384M	1.000	59	0%	57	26.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
MECOM	2122	genome.wustl.edu	37	3	168834474	168834474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494292	-1	known	p.R396C	1.000	269	0.7%	165	12.7%	58	13.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MECOM	2122	genome.wustl.edu	37	3	168838909	168838909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494292	-1	known	p.T356M	1.000	56	0%	36	36.1%	59	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SAMD7	344658	genome.wustl.edu	37	3	169639020	169639020	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182610.2	+1	provisional	p.T35	0.002	343	0%	227	11%	0	-	-	-	-	NULL
SEC62	7095	genome.wustl.edu	37	3	169710486	169710486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003262.3	+1	reviewed	p.R279G	1.000	420	0.2%	246	10.2%	97	16.4%	possibly_damaging(0.939)	tolerated(0.1)	deleterious(0.671)	HMMPfam_Sec62
PHC3	80012	genome.wustl.edu	37	3	169840497	169840497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.M608I	1.000	227	0%	154	29.2%	10	30%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
SLC2A2	6514	genome.wustl.edu	37	3	170720395	170720395	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.G346	0.001	99	0%	76	23.7%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
SLC2A2	6514	genome.wustl.edu	37	3	170723839	170723839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000340.1	-1	reviewed	p.G223V	1.000	150	0%	118	37.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TNIK	23043	genome.wustl.edu	37	3	170797341	170797341	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.V1138	0.925	156	0%	130	28.5%	1	100%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
FNDC3B	64778	genome.wustl.edu	37	3	172003744	172003744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135095.1	+1	validated	p.Q273H	0.999	229	0.4%	157	28%	34	38.2%	benign(0.027)	deleterious(0.03)	neutral(0.366)	NULL
GHSR	2693	genome.wustl.edu	37	3	172165693	172165693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198407.2	-1	reviewed	p.A171T	1.000	54	0%	36	27.8%	0	-	possibly_damaging(0.53)	deleterious(0)	deleterious(0.623)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SPATA16	83893	genome.wustl.edu	37	3	172642042	172642042	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031955.5	-1	reviewed	p.R432*	0.936	346	0%	264	27.7%	0	-	-	-	-	NULL
SPATA16	83893	genome.wustl.edu	37	3	172674493	172674493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031955.5	-1	reviewed	p.P352H	1.000	286	0%	214	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
NLGN1	22871	genome.wustl.edu	37	3	173998848	173998848	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014932.2	+1	reviewed	p.E743*	1.000	229	0%	214	27.6%	0	-	-	-	-	NULL
NAALADL2	254827	genome.wustl.edu	37	3	175473043	175473043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207015.2	+1	validated	p.A676T	1.000	140	0%	71	23.9%	7	28.5%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_Transferrin receptor ectodomain C-terminal domain
KCNMB2	10242	genome.wustl.edu	37	3	178546115	178546115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005832.3	+1	reviewed	p.K126R	1.000	157	0%	70	11.4%	1	0%	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_CaKB
ZMAT3	64393	genome.wustl.edu	37	3	178748699	178748699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022470.3	-1	reviewed	p.A120V	0.103	412	0%	224	32.6%	7	14.2%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916537	178916537	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	e1-1	1.000	74	0%	42	50%	0	-	-	-	-	-
ZNF639	51193	genome.wustl.edu	37	3	179051880	179051880	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016331.1	+1	provisional	p.C376	1.000	254	0%	150	28.7%	61	36%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEX5L	51555	genome.wustl.edu	37	3	179533678	179533678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.A352S	1.000	206	0.5%	117	15.4%	0	-	possibly_damaging(0.836)	deleterious(0)	deleterious(0.764)	superfamily_TPR-like
PEX5L	51555	genome.wustl.edu	37	3	179537667	179537667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.T307N	0.756	195	0%	126	30.2%	0	-	benign(0.004)	tolerated(0.43)	neutral(0.013)	NULL
PEX5L	51555	genome.wustl.edu	37	3	179537755	179537755	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.E278*	1.000	227	0%	129	24%	0	-	-	-	-	NULL
TTC14	151613	genome.wustl.edu	37	3	180324274	180324274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.A352V	1.000	257	0%	161	29.2%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC14	151613	genome.wustl.edu	37	3	180327771	180327771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.E585A	1.000	687	0%	416	27.6%	13	38.4%	unknown(0)	deleterious(0.01)	-	NULL
FXR1	8087	genome.wustl.edu	37	3	180666281	180666281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005087.2	+1	reviewed	p.E139D	1.000	216	0%	142	31%	49	87.7%	benign(0.001)	tolerated(0.44)	neutral(0.013)	NULL
FXR1	8087	genome.wustl.edu	37	3	180671577	180671577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005087.2	+1	reviewed	p.G277S	1.000	408	0%	244	29.9%	47	17%	benign(0)	tolerated(1)	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FXR1	8087	genome.wustl.edu	37	3	180675717	180675717	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005087.2	+1	reviewed	e10+1	1.000	337	0.3%	223	26.5%	2	100%	-	-	-	-
ATP11B	23200	genome.wustl.edu	37	3	182584228	182584228	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000498086	+1	known	p.Q340*	1.000	216	0%	162	30.9%	11	36.3%	benign(0.014)	tolerated(0.16)	neutral(0.060)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
MCF2L2	23101	genome.wustl.edu	37	3	183014773	183014773	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015078.2	-1	validated	p.L496	0.131	243	0%	138	28.3%	1	0%	-	-	-	NULL
KLHL6	89857	genome.wustl.edu	37	3	183209790	183209790	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130446.2	-1	validated	p.S597	0.052	51	0%	28	28.6%	3	0%	-	-	-	HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL6	89857	genome.wustl.edu	37	3	183209839	183209839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130446.2	-1	validated	p.P581L	0.948	73	0%	37	35.1%	1	0%	benign(0.028)	deleterious(0.01)	neutral(0.407)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
KLHL6	89857	genome.wustl.edu	37	3	183245736	183245736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130446.2	-1	validated	p.D119G	1.000	396	0%	196	25%	1	0%	benign(0.244)	tolerated(0.36)	neutral(0.044)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
ABCC5	10057	genome.wustl.edu	37	3	183670985	183670985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382495	-1	known	p.C787R	0.985	178	0%	77	18.2%	7	28.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ABCC5	10057	genome.wustl.edu	37	3	183707141	183707141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005688.2	-1	reviewed	p.A54S	1.000	173	0%	107	28%	19	47.3%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
HTR3D	200909	genome.wustl.edu	37	3	183755896	183755896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145143.1	+1	reviewed	p.S202G	1.000	298	0%	170	28.8%	0	-	probably_damaging(0.999)	tolerated(0.82)	deleterious(0.491)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HTR3C	170572	genome.wustl.edu	37	3	183777337	183777337	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130770.2	+1	reviewed	p.R278	0.002	423	0%	247	29.1%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
HTR3E	285242	genome.wustl.edu	37	3	183824455	183824455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182589.2	+1	reviewed	p.T464A	0.023	251	0.4%	109	20.2%	0	-	benign(0.012)	deleterious(0.01)	neutral(0.406)	superfamily_Neu_channel_TM
DVL3	1857	genome.wustl.edu	37	3	183882926	183882926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.S209C	1.000	79	0%	29	24.1%	70	41.4%	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	HMMPfam_Dishevelled
DVL3	1857	genome.wustl.edu	37	3	183887840	183887840	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.A515	0.996	113	0.9%	56	19.6%	52	30.7%	-	-	-	superfamily_SSF46785
ECE2	9718	genome.wustl.edu	37	3	183975340	183975340	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014693.3	+1	validated	p.V92	0.019	83	0%	35	25.7%	43	37.2%	-	-	-	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PSMD2	5708	genome.wustl.edu	37	3	184026538	184026538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002808.3	+1	reviewed	p.T863A	1.000	315	0%	142	28.2%	307	39.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184038426	184038426	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.I182	1.000	131	0%	66	22.7%	176	47.1%	-	-	-	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184041200	184041200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.G698D	1.000	220	0%	143	32.9%	130	40%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184042682	184042682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.R879H	1.000	105	0%	70	35.7%	212	43.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
EIF4G1	1981	genome.wustl.edu	37	3	184045148	184045148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.E1191D	1.000	65	0%	38	23.7%	190	48.4%	probably_damaging(0.971)	tolerated(0.3)	neutral(0.442)	NULL
EIF4G1	1981	genome.wustl.edu	37	3	184052638	184052638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182917.3	+1	reviewed	p.S1581F	1.000	136	0%	74	17.6%	338	44.3%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_W2,HMMSmart_SM00515,superfamily_ARM repeat
FAM131A	131408	genome.wustl.edu	37	3	184060596	184060596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144635.4	+1	validated	p.E160D	0.986	176	0%	70	20%	10	10%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
CLCN2	1181	genome.wustl.edu	37	3	184075622	184075622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004366.4	-1	reviewed	p.S213N	1.000	23	0%	12	50%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
POLR2H	5437	genome.wustl.edu	37	3	184084585	184084585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006232.2	+1	reviewed	p.R111H	0.994	57	0%	32	28.1%	240	38.7%	unknown(0)	tolerated(0.06)	-	HMMPfam_RNA_pol_Rpb8,HMMSmart_SM00658,superfamily_Nucleic acid-binding proteins
EPHB3	2049	genome.wustl.edu	37	3	184297661	184297661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004443.3	+1	reviewed	p.S704I	1.000	71	0%	39	41%	295	44.7%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
EHHADH	1962	genome.wustl.edu	37	3	184922282	184922282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001966.3	-1	reviewed	p.A278T	0.023	511	0%	339	28.3%	3	0%	benign(0.116)	tolerated(0.06)	neutral(0.332)	superfamily_SSF52096
MAP3K13	9175	genome.wustl.edu	37	3	185155362	185155362	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004721.3	+1	reviewed	p.N201	0.997	307	0%	192	32.8%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP3K13	9175	genome.wustl.edu	37	3	185183577	185183577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004721.3	+1	reviewed	p.E477D	1.000	221	0.5%	159	25.2%	0	-	possibly_damaging(0.58)	deleterious(0.02)	deleterious(0.582)	NULL
MAP3K13	9175	genome.wustl.edu	37	3	185198023	185198023	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004721.3	+1	reviewed	p.P835	0.998	334	0.3%	157	28.7%	2	50%	-	-	-	NULL
IGF2BP2	10644	genome.wustl.edu	37	3	185404935	185404935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006548.4	-1	reviewed	p.P241H	1.000	319	0.3%	164	30.5%	1	0%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
DGKG	1608	genome.wustl.edu	37	3	185879404	185879404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001346.2	-1	reviewed	p.Q755H	1.000	167	0%	104	27.9%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DGKG	1608	genome.wustl.edu	37	3	186015902	186015902	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001346.2	-1	reviewed	p.T87	0.547	153	0%	71	31%	0	-	-	-	-	superfamily_EF-hand
TBCCD1	55171	genome.wustl.edu	37	3	186276278	186276278	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134415.1	-1	validated	p.G140	0.100	450	0%	245	27.3%	22	50%	-	-	-	NULL
AHSG	197	genome.wustl.edu	37	3	186338548	186338548	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001622.2	+1	reviewed	p.R311	0.000	316	0%	152	30.3%	0	-	-	-	-	NULL
KNG1	3827	genome.wustl.edu	37	3	186442943	186442943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102416.2	+1	reviewed	p.S153N	0.030	56	0%	38	31.6%	0	-	benign(0.076)	tolerated(0.73)	neutral(0.007)	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin
RFC4	5984	genome.wustl.edu	37	3	186522400	186522400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002916.3	-1	reviewed	p.A35T	0.009	228	0%	102	15.7%	27	51.8%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
MASP1	5648	genome.wustl.edu	37	3	186943256	186943256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001879.5	-1	reviewed	p.L533F	0.908	514	0%	245	26.5%	0	-	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MASP1	5648	genome.wustl.edu	37	3	186953827	186953827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139125.3	-1	reviewed	p.R611Q	0.994	110	0%	62	29%	0	-	benign(0.031)	tolerated(0.61)	neutral(0.005)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
MASP1	5648	genome.wustl.edu	37	3	187003660	187003660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139125.3	-1	reviewed	p.H64Y	1.000	387	0.3%	243	25.5%	1	0%	possibly_damaging(0.767)	tolerated(0.18)	neutral(0.340)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
BCL6	604	genome.wustl.edu	37	3	187449517	187449517	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.C121	1.000	239	0%	129	30.2%	14	14.2%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
BCL6	604	genome.wustl.edu	37	3	187449635	187449635	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.G82fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LPP	4026	genome.wustl.edu	37	3	188327333	188327333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005578.3	+1	reviewed	p.D272N	0.997	196	0%	154	31.2%	2	50%	probably_damaging(0.953)	tolerated(0.22)	neutral(0.439)	NULL
LPP	4026	genome.wustl.edu	37	3	188327613	188327613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005578.3	+1	reviewed	p.A365V	0.011	256	0%	161	23%	1	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	NULL
LPP	4026	genome.wustl.edu	37	3	188478014	188478014	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005578.3	+1	reviewed	p.R452*	1.000	207	0%	152	28.3%	4	25%	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
LPP	4026	genome.wustl.edu	37	3	188592251	188592251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005578.3	+1	reviewed	p.A608V	1.000	218	0%	104	27.9%	2	0%	benign(0.018)	tolerated(1)	neutral(0.001)	NULL
TP63	8626	genome.wustl.edu	37	3	189612157	189612157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003722.4	+1	reviewed	p.R637C	1.000	133	0%	63	27%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
LEPREL1	55214	genome.wustl.edu	37	3	189689792	189689792	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018192.3	-1	validated	p.Q568	1.000	67	0%	43	41.9%	1	0%	-	-	-	HMMSmart_SM00702
CLDN1	9076	genome.wustl.edu	37	3	190039815	190039815	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021101.4	-1	validated	p.Q61*	1.000	70	0%	36	25%	7	0%	-	-	-	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
IL1RAP	3556	genome.wustl.edu	37	3	190366348	190366348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002182.3	+1	reviewed	p.V523I	1.000	292	0%	192	30.7%	5	0%	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
FGF12	2257	genome.wustl.edu	37	3	191888255	191888255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021032.3	-1	reviewed	p.P202H	1.000	454	0%	334	28.4%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00442,superfamily_Cytokine
FGF12	2257	genome.wustl.edu	37	3	191888349	191888349	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021032.3	-1	reviewed	p.R171*	1.000	871	0.1%	622	25.4%	3	100%	-	-	-	HMMPfam_FGF,HMMSmart_SM00442,superfamily_Cytokine
MB21D2	151963	genome.wustl.edu	37	3	192516786	192516786	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178496.3	-1	validated	p.L289	1.000	110	0.9%	55	36.4%	1	100%	-	-	-	NULL
ATP13A4	84239	genome.wustl.edu	37	3	193153474	193153474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032279.2	-1	validated	p.S911I	1.000	565	0%	280	29.6%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Calcium ATPase transmembrane domain M
ATP13A4	84239	genome.wustl.edu	37	3	193183899	193183899	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032279.2	-1	validated	p.R396M	1.000	703	0%	464	23.9%	1	100%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
MUC4	4585	genome.wustl.edu	37	3	195515896	195515896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.A852V	0.000	69	0%	34	29.4%	0	-	possibly_damaging(0.86)	tolerated(0.19)	neutral(0.382)	NULL
TFRC	7037	genome.wustl.edu	37	3	195779028	195779028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128148.1	-1	validated	p.V690I	0.996	168	0%	70	31.4%	105	42.8%	possibly_damaging(0.836)	tolerated(0.11)	deleterious(0.591)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
ENSG00000163959	0	genome.wustl.edu	37	3	195954531	195954531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428985	+1	known	p.S108N	0.010	84	0%	36	30.6%	0	-	-	-	-	NULL
TM4SF19	116211	genome.wustl.edu	37	3	196051286	196051286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138461.2	-1	validated	p.G102D	0.994	92	0%	47	21.3%	1	0%	possibly_damaging(0.631)	tolerated(0.05)	deleterious(0.566)	HMMPfam_L6_membrane
UBXN7	26043	genome.wustl.edu	37	3	196083559	196083559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015562.1	-1	validated	p.N489K	1.000	493	0%	321	29.9%	11	27.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Ubiquitin-like
UBXN7	26043	genome.wustl.edu	37	3	196134172	196134172	+	Missense_Mutation	SNP	C	C	T	rs145707849	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015562.1	-1	validated	p.A56T	1.000	278	0%	179	27.9%	7	14.2%	benign(0.323)	tolerated(0.1)	neutral(0.387)	NULL
RNF168	165918	genome.wustl.edu	37	3	196215477	196215477	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152617.2	-1	provisional	e2+1	1.000	106	0%	78	33.3%	0	-	-	-	-	-
MFI2	4241	genome.wustl.edu	37	3	196735778	196735778	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005929.4	-1	reviewed	p.P528	0.000	74	0%	30	13.3%	2	0%	-	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
MFI2	4241	genome.wustl.edu	37	3	196737665	196737665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005929.4	-1	reviewed	p.A412T	1.000	33	0%	12	41.7%	1	0%	benign(0.268)	deleterious(0.02)	neutral(0.412)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
MFI2	4241	genome.wustl.edu	37	3	196751191	196751191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005929.4	-1	reviewed	p.G157V	1.000	27	0%	15	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
KIAA0226	9711	genome.wustl.edu	37	3	197444856	197444856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145642.2	-1	validated	p.R11C	1.000	306	0%	148	17.6%	2	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
LRCH3	84859	genome.wustl.edu	37	3	197597144	197597144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032773.2	+1	provisional	p.R663C	0.990	311	0%	213	25.8%	15	73.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calponin-homology
LRCH3	84859	genome.wustl.edu	37	3	197598255	197598255	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428136	+1	known	p.R62W	0.783	443	0%	253	22.9%	23	47.8%	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
IQCG	84223	genome.wustl.edu	37	3	197670736	197670736	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134435.1	-1	validated	p.S65	0.045	177	0%	121	32.2%	20	35%	-	-	-	NULL
ZNF732	654254	genome.wustl.edu	37	4	265688	265688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137608.1	-1	provisional	p.T320A	0.347	211	0%	145	13.1%	0	-	benign(0.011)	tolerated(0.93)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695
PIGG	54872	genome.wustl.edu	37	4	517562	517562	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127178.1	+1	validated	p.S643	0.000	67	0%	31	12.9%	40	7.5%	-	-	-	NULL
PCGF3	10336	genome.wustl.edu	37	4	727506	727506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006315.4	+1	reviewed	p.A13T	1.000	63	0%	30	20%	61	26.2%	benign(0.124)	deleterious(0.01)	neutral(0.416)	superfamily_RING/U-box
GAK	2580	genome.wustl.edu	37	4	860995	860995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.P874H	0.388	35	0%	21	28.6%	39	64.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LETM1	3954	genome.wustl.edu	37	4	1821103	1821103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012318.2	-1	reviewed	p.L569M	1.000	134	0%	81	22.2%	42	54.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
WHSC1	7468	genome.wustl.edu	37	4	1957034	1957034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042424.2	+1	reviewed	p.V829I	1.000	26	0%	15	40%	32	40.6%	benign(0.253)	tolerated(0.37)	neutral(0.045)	superfamily_FYVE/PHD zinc finger
RNF4	6047	genome.wustl.edu	37	4	2514858	2514858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002938.3	+1	reviewed	p.E141D	1.000	700	0%	383	26.1%	83	48.1%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
FAM193A	8603	genome.wustl.edu	37	4	2648542	2648542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003704.3	+1	validated	p.A141T	1.000	107	0.9%	58	27.6%	9	22.2%	probably_damaging(0.955)	tolerated(0.32)	neutral(0.423)	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2834074	2834074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122681.1	+1	reviewed	p.S475G	0.000	55	0%	27	18.5%	41	39%	benign(0.085)	tolerated(0.43)	neutral(0.019)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ADD1	118	genome.wustl.edu	37	4	2877761	2877761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014189.2	+1	reviewed	p.N40S	1.000	253	0%	160	26.3%	45	28.8%	probably_damaging(0.955)	tolerated(0.08)	deleterious(0.699)	NULL
NOP14	8602	genome.wustl.edu	37	4	2958452	2958452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003703.1	-1	validated	p.K139N	0.947	92	1.1%	57	22.8%	49	57.1%	benign(0.406)	deleterious(0)	deleterious(0.575)	HMMPfam_Nop14
HTT	3064	genome.wustl.edu	37	4	3149794	3149794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002111.6	+1	reviewed	p.T1120A	0.000	143	0%	75	26.7%	12	33.3%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
HTT	3064	genome.wustl.edu	37	4	3208605	3208605	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002111.6	+1	reviewed	p.T1990	0.838	80	0%	45	17.8%	27	48.1%	-	-	-	NULL
HGFAC	3083	genome.wustl.edu	37	4	3451115	3451115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001528.2	+1	reviewed	p.R646Q	0.067	21	0%	10	60%	0	-	benign(0.266)	tolerated(0.1)	neutral(0.315)	superfamily_Pept_Ser_Cys
LYAR	55646	genome.wustl.edu	37	4	4275356	4275356	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145725.1	-1	validated	p.E291	0.000	234	0%	154	15.6%	30	20%	-	-	-	NULL
LYAR	55646	genome.wustl.edu	37	4	4276205	4276205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145725.1	-1	validated	p.A241T	0.003	630	0.2%	372	25.5%	31	58%	probably_damaging(0.998)	tolerated(0.59)	deleterious(0.479)	NULL
LYAR	55646	genome.wustl.edu	37	4	4276463	4276463	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145725.1	-1	validated	p.L155I	0.000	334	0.3%	155	13.5%	51	15.6%	benign(0.288)	tolerated(0.19)	neutral(0.138)	NULL
ZBTB49	166793	genome.wustl.edu	37	4	4303869	4303869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145291.3	+1	validated	p.Q102H	1.000	423	0%	294	24.1%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
CYTL1	54360	genome.wustl.edu	37	4	5018597	5018597	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018659.2	-1	validated	p.K98T	0.999	246	0%	145	17.9%	0	-	possibly_damaging(0.497)	tolerated(0.06)	deleterious(0.489)	NULL
STK32B	55351	genome.wustl.edu	37	4	5418605	5418605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018401.1	+1	provisional	p.T169M	0.856	56	0%	37	21.6%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STK32B	55351	genome.wustl.edu	37	4	5448495	5448495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018401.1	+1	provisional	p.R220W	1.000	64	0%	34	44.1%	0	-	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EVC2	132884	genome.wustl.edu	37	4	5564585	5564585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147127.4	-1	reviewed	p.G1306D	0.024	378	0%	200	27%	8	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EVC2	132884	genome.wustl.edu	37	4	5578050	5578050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147127.4	-1	reviewed	p.E1063D	0.010	110	0%	66	37.9%	2	100%	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
EVC	2121	genome.wustl.edu	37	4	5735084	5735084	+	Silent	SNP	C	C	T	rs187457187	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153717.2	+1	reviewed	p.D208	0.756	826	0.1%	444	30.6%	6	50%	-	-	-	NULL
EVC	2121	genome.wustl.edu	37	4	5785374	5785374	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153717.2	+1	reviewed	p.E553	0.121	464	0%	259	25.1%	4	25%	-	-	-	NULL
EVC	2121	genome.wustl.edu	37	4	5809932	5809932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153717.2	+1	reviewed	p.L856M	0.002	43	0%	28	35.7%	1	100%	probably_damaging(0.989)	tolerated(0.21)	deleterious(0.483)	NULL
CRMP1	1400	genome.wustl.edu	37	4	5857870	5857870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014809.1	-1	reviewed	p.G274C	1.000	537	0%	259	26.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
WFS1	7466	genome.wustl.edu	37	4	6296818	6296818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006005.3	+1	reviewed	p.A255T	0.993	43	0%	18	44.4%	43	48.8%	benign(0.348)	tolerated(0.14)	neutral(0.359)	NULL
WFS1	7466	genome.wustl.edu	37	4	6302773	6302773	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006005.3	+1	reviewed	p.F417	1.000	177	0%	73	34.2%	67	25.3%	-	-	-	NULL
ACOX3	8310	genome.wustl.edu	37	4	8396361	8396361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003501.2	-1	validated	p.R389C	0.725	43	0%	16	50%	22	36.3%	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
CPZ	8532	genome.wustl.edu	37	4	8605853	8605853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014447.1	+1	reviewed	p.S216I	1.000	16	0.000	7	0.571	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
WDR1	9948	genome.wustl.edu	37	4	10083062	10083062	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017491.3	-1	reviewed	p.G402fs	0.997	-	-	-	-	-	-	-	-	-	superfamily_WD40 repeat-like
ZNF518B	85460	genome.wustl.edu	37	4	10447479	10447479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.E158D	0.252	317	0%	174	29.9%	10	70%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
RAB28	9364	genome.wustl.edu	37	4	13462440	13462440	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510528	-1	known	p.W6*	1.000	238	0%	200	30%	11	54.5%	unknown(0)	tolerated(0.2)	-	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13578592	13578592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.R2970C	1.000	232	0%	144	34.7%	21	57.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13593585	13593585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.L2704I	0.124	40	0%	25	16%	8	12.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13600911	13600911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.D2538G	0.000	178	0%	93	32.3%	10	10%	possibly_damaging(0.718)	tolerated(0.64)	neutral(0.263)	NULL
BOD1L	259282	genome.wustl.edu	37	4	13604791	13604791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.A1245T	0.000	191	0%	124	23.4%	9	77.7%	benign(0.23)	deleterious(0)	neutral(0.468)	superfamily_SSF81995
BOD1L	259282	genome.wustl.edu	37	4	13616105	13616105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.H297Y	0.100	138	0%	76	23.7%	0	-	benign(0.025)	tolerated(0.08)	neutral(0.301)	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15581736	15581736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.P1306H	1.000	178	0%	95	29.5%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FBXL5	26234	genome.wustl.edu	37	4	15614001	15614001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012161.2	-1	reviewed	p.E629D	1.000	166	0%	101	28.7%	58	39.6%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMSmart_SM00367,superfamily_RNI-like
CLRN2	645104	genome.wustl.edu	37	4	17524663	17524663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079827.2	+1	reviewed	p.A144T	0.998	130	0%	64	34.4%	0	-	benign(0.3)	deleterious(0.04)	neutral(0.442)	NULL
CLRN2	645104	genome.wustl.edu	37	4	17528494	17528494	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079827.2	+1	reviewed	p.D163V	0.765	97	0%	43	30.2%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
LAP3	51056	genome.wustl.edu	37	4	17585208	17585208	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015907.2	+1	validated	p.E161V	1.000	162	0%	84	20.2%	72	22.2%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_Peptidase_M17_N,superfamily_Macro domain-like
LCORL	254251	genome.wustl.edu	37	4	17887691	17887691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153686.7	-1	reviewed	p.G259D	1.000	410	0%	352	25.6%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
LCORL	254251	genome.wustl.edu	37	4	17974509	17974509	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153686.7	-1	reviewed	e2-1	1.000	49	0%	37	16.2%	0	-	-	-	-	-
SLIT2	9353	genome.wustl.edu	37	4	20490577	20490577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.E249D	1.000	241	0%	172	27.9%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
SLIT2	9353	genome.wustl.edu	37	4	20493401	20493401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.A265T	1.000	258	0.4%	173	20.2%	1	100%	benign(0)	tolerated(0.09)	neutral(0.296)	superfamily_L domain-like
PACRGL	133015	genome.wustl.edu	37	4	20714418	20714418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145048.3	+1	validated	p.R125I	1.000	644	0%	398	26.6%	13	0%	benign(0.311)	tolerated(0.64)	neutral(0.100)	HMMPfam_ParcG
GPR125	166647	genome.wustl.edu	37	4	22389826	22389826	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145290.2	-1	validated	p.A1156	0.000	298	0.7%	209	31.6%	43	32.5%	-	-	-	NULL
GBA3	57733	genome.wustl.edu	37	4	22749583	22749583	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020973.3	+1	validated	p.Q317	0.003	83	0%	59	20.3%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
DHX15	1665	genome.wustl.edu	37	4	24578097	24578097	+	Silent	SNP	C	C	A	rs6841898	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001358.2	-1	reviewed	p.T92	0.996	261	0%	167	28.7%	135	48.1%	-	-	-	NULL
SEPSECS	51091	genome.wustl.edu	37	4	25157662	25157662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016955.3	-1	validated	p.A103T	1.000	319	0%	192	28.6%	2	50%	benign(0.07)	deleterious(0.05)	neutral(0.350)	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases
SEPSECS	51091	genome.wustl.edu	37	4	25158481	25158481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016955.3	-1	validated	p.A50T	0.987	286	0%	153	15.7%	8	25%	benign(0.006)	tolerated(0.26)	neutral(0.034)	HMMPfam_SLA_LP_auto_ag,superfamily_PLP-dependent transferases,PatternScan_PEROXIDASE_1
PI4K2B	55300	genome.wustl.edu	37	4	25258202	25258202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018323.3	+1	validated	p.A221V	1.000	240	0%	177	30.5%	23	60.8%	probably_damaging(0.999)	tolerated(0.54)	deleterious(0.498)	HMMPfam_PI3_PI4_kinase
PI4K2B	55300	genome.wustl.edu	37	4	25278649	25278649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018323.3	+1	validated	p.T429I	0.980	162	0%	96	28.1%	29	62%	benign(0.045)	deleterious(0.05)	neutral(0.348)	HMMPfam_PI3_PI4_kinase
ANAPC4	29945	genome.wustl.edu	37	4	25384996	25384996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013367.2	+1	reviewed	p.E117K	1.000	202	0%	119	29.4%	24	50%	possibly_damaging(0.891)	tolerated(0.06)	deleterious(0.673)	NULL
LOC100288962	100288962	genome.wustl.edu	37	4	25624565	25624565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342448.1	+1	model	p.R88M	0.993	47	0%	29	17.2%	0	-	-	-	-	HMMSmart_SM00512,superfamily_POZ domain,HMMPfam_Skp1_POZ
SLC34A2	10568	genome.wustl.edu	37	4	25678040	25678040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006424.2	+1	reviewed	p.R581H	0.000	163	0%	110	39.1%	34	26.4%	benign(0.013)	tolerated(0.18)	neutral(0.057)	NULL
SLC34A2	10568	genome.wustl.edu	37	4	25678081	25678081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006424.2	+1	reviewed	p.L595M	0.000	167	0%	117	40.2%	30	33.3%	possibly_damaging(0.609)	tolerated(0.19)	neutral(0.261)	NULL
SEL1L3	23231	genome.wustl.edu	37	4	25783928	25783928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015187.3	-1	validated	p.A798V	0.996	485	0%	311	29.3%	102	47%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
SEL1L3	23231	genome.wustl.edu	37	4	25849231	25849231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015187.3	-1	validated	p.T140A	1.000	376	0%	184	25.5%	50	38%	benign(0.021)	deleterious(0.02)	neutral(0.384)	NULL
STIM2	57620	genome.wustl.edu	37	4	27000939	27000939	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.L286V	0.020	183	0%	110	40.9%	3	33.3%	benign(0.407)	deleterious(0.01)	deleterious(0.537)	superfamily_SAM/Pointed domain,HMMPfam_SAM_2
STIM2	57620	genome.wustl.edu	37	4	27004726	27004726	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.Q414	1.000	232	0%	140	18.6%	4	0%	-	-	-	NULL
STIM2	57620	genome.wustl.edu	37	4	27019550	27019550	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.A656	0.954	728	0%	398	30.4%	8	37.5%	-	-	-	NULL
RELL1	768211	genome.wustl.edu	37	4	37636525	37636525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085399.1	-1	validated	p.V222I	0.998	229	0%	112	28.6%	6	33.3%	probably_damaging(0.999)	tolerated(0.38)	deleterious(0.508)	NULL
TBC1D1	23216	genome.wustl.edu	37	4	38097692	38097692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015173.2	+1	validated	p.M793I	0.998	352	0%	199	29.1%	30	50%	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Ypt/Rab-GAP domain of gyp1p
TLR10	81793	genome.wustl.edu	37	4	38775961	38775961	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017388.1	-1	reviewed	p.C417*	0.942	285	0%	203	26.1%	0	-	-	-	-	superfamily_SSF52058
FAM114A1	92689	genome.wustl.edu	37	4	38910245	38910245	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138389.2	+1	validated	p.A230	0.685	242	0%	161	32.9%	16	56.2%	-	-	-	HMMPfam_DUF719
WDR19	57728	genome.wustl.edu	37	4	39196163	39196163	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025132.3	+1	reviewed	e5-1	1.000	54	0%	39	23.1%	0	-	-	-	-	-
RFC1	5981	genome.wustl.edu	37	4	39306484	39306484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.A687V	0.997	1252	0%	838	27%	23	82.6%	benign(0.067)	deleterious(0.01)	neutral(0.410)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
KLB	152831	genome.wustl.edu	37	4	39450125	39450125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175737.3	+1	validated	p.C985Y	0.999	280	0.4%	158	27.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Glyco_hydro_cat
UGDH	7358	genome.wustl.edu	37	4	39523094	39523094	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003359.3	-1	reviewed	p.G13	0.997	148	0.7%	103	28.2%	253	42.6%	-	-	-	HMMPfam_UDPG_MGDP_dh_N,superfamily_NAD(P)-bd
PDS5A	23244	genome.wustl.edu	37	4	39875970	39875970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100399.1	-1	reviewed	p.A739D	1.000	317	0%	215	29.8%	75	57.3%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	superfamily_ARM repeat
PDS5A	23244	genome.wustl.edu	37	4	39910114	39910114	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100399.1	-1	reviewed	p.H378	1.000	399	0%	265	30.6%	49	63.2%	-	-	-	superfamily_ARM repeat
N4BP2	55728	genome.wustl.edu	37	4	40133540	40133540	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018177.3	+1	reviewed	e11+1	1.000	229	0%	155	29.7%	1	100%	-	-	-	-
RBM47	54502	genome.wustl.edu	37	4	40428047	40428047	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098634.1	-1	validated	p.I552	0.993	73	0%	33	24.2%	46	39.1%	-	-	-	NULL
RBM47	54502	genome.wustl.edu	37	4	40440169	40440169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098634.1	-1	validated	p.L248I	1.000	163	0%	56	21.4%	64	39%	probably_damaging(0.965)	tolerated(0.09)	deleterious(0.704)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
APBB2	323	genome.wustl.edu	37	4	40823918	40823918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513611	-1	known	p.R663C	0.839	80	0%	44	25%	7	42.8%	-	-	-	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
LIMCH1	22998	genome.wustl.edu	37	4	41687796	41687796	+	Missense_Mutation	SNP	C	C	T	rs191390776	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014988.2	+1	validated	p.P962L	0.825	392	0%	285	27.7%	8	37.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
DCAF4L1	285429	genome.wustl.edu	37	4	41984540	41984540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029955.3	+1	validated	p.R244H	0.996	157	0%	71	36.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ATP8A1	10396	genome.wustl.edu	37	4	42571222	42571222	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006095.2	-1	reviewed	p.G432	1.000	182	0%	105	31.4%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
YIPF7	285525	genome.wustl.edu	37	4	44631521	44631521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182592.2	-1	validated	p.V133L	0.999	68	0%	44	25%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Yip1
GNPDA2	132789	genome.wustl.edu	37	4	44709856	44709856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.A228T	1.000	155	0%	101	28.7%	49	44.8%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
GNPDA2	132789	genome.wustl.edu	37	4	44713010	44713010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138335.1	-1	provisional	p.A185D	1.000	354	0%	252	15.1%	31	22.5%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	HMMPfam_Glucosamine_iso,superfamily_NagB/RpiA/CoA transferase-like
GABRG1	2565	genome.wustl.edu	37	4	46099217	46099217	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173536.3	-1	reviewed	e2+1	1.000	469	0%	444	29.5%	0	-	-	-	-	-
ATP10D	57205	genome.wustl.edu	37	4	47548743	47548743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020453.3	+1	validated	p.S500I	0.984	632	0%	379	14.5%	2	0%	probably_damaging(0.967)	tolerated(0.07)	deleterious(0.728)	superfamily_HAD-like
ATP10D	57205	genome.wustl.edu	37	4	47559754	47559754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020453.3	+1	validated	p.S633Y	0.997	149	0%	86	29.1%	3	66.6%	possibly_damaging(0.903)	deleterious(0.01)	deleterious(0.764)	superfamily_HAD-like
CORIN	10699	genome.wustl.edu	37	4	47645274	47645274	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006587.2	-1	reviewed	e15-1	1.000	267	0%	169	30.8%	0	-	-	-	-	-
CORIN	10699	genome.wustl.edu	37	4	47647110	47647110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006587.2	-1	reviewed	p.E649K	1.000	282	0%	167	28.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00192,superfamily_LDL receptor-like module
NFXL1	152518	genome.wustl.edu	37	4	47877211	47877211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152995.4	-1	validated	p.P727T	1.000	175	0%	106	12.3%	21	19%	probably_damaging(0.992)	tolerated(0.21)	deleterious(0.491)	HMMPfam_zf-NF-X1,HMMSmart_SM00438
NFXL1	152518	genome.wustl.edu	37	4	47887537	47887537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152995.4	-1	validated	p.A601V	1.000	360	0%	265	30.2%	12	58.3%	benign(0.001)	tolerated(1)	-	HMMPfam_zf-NF-X1,HMMSmart_SM00438
CNGA1	1259	genome.wustl.edu	37	4	47939690	47939690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142564.1	-1	reviewed	p.R343M	0.977	435	0.2%	273	24.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TXK	7294	genome.wustl.edu	37	4	48088527	48088527	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003328.2	-1	validated	p.G304	0.997	253	0%	165	29.7%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FRYL	285527	genome.wustl.edu	37	4	48548100	48548100	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.E1755*	1.000	84	0%	45	26.7%	7	14.2%	-	-	-	NULL
FRYL	285527	genome.wustl.edu	37	4	48583536	48583536	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.A691	0.014	123	0%	61	19.7%	4	25%	-	-	-	superfamily_ARM repeat
FRYL	285527	genome.wustl.edu	37	4	48597998	48597998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015030.1	-1	validated	p.S352Y	1.000	162	0%	94	13.8%	8	0%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	superfamily_ARM repeat
LRRC66	339977	genome.wustl.edu	37	4	52860859	52860859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.L777I	0.001	282	0%	205	29.8%	9	77.7%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
LRRC66	339977	genome.wustl.edu	37	4	52862198	52862198	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.T330	0.000	83	0%	69	21.7%	2	50%	-	-	-	NULL
USP46	64854	genome.wustl.edu	37	4	53468126	53468126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022832.3	-1	validated	p.R273C	1.000	210	0%	129	33.3%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
SCFD2	152579	genome.wustl.edu	37	4	53773679	53773679	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152540.3	-1	validated	p.H596R	1.000	280	0%	191	25.7%	21	61.9%	possibly_damaging(0.81)	tolerated(0.06)	deleterious(0.627)	superfamily_Sec1/munc18-like (SM) proteins
FIP1L1	81608	genome.wustl.edu	37	4	54319284	54319284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030917.3	+1	reviewed	p.P495S	0.767	293	0%	249	24.5%	71	42.2%	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
LNX1	84708	genome.wustl.edu	37	4	54373483	54373483	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	e3+1	1.000	310	0%	162	29.6%	0	-	-	-	-	-
LNX1	84708	genome.wustl.edu	37	4	54374384	54374384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	p.A131T	1.000	117	0%	47	14.9%	5	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CHIC2	26511	genome.wustl.edu	37	4	54915202	54915202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012110.2	-1	reviewed	p.R84C	0.998	129	0%	88	21.6%	25	44%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Erf4
PDGFRA	5156	genome.wustl.edu	37	4	55129833	55129833	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	e3-1	1.000	283	0%	162	24.1%	0	-	-	-	-	-
PDGFRA	5156	genome.wustl.edu	37	4	55152012	55152012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.V815A	0.993	215	0%	130	29.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
PDGFRA	5156	genome.wustl.edu	37	4	55156679	55156679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006206.4	+1	reviewed	p.P1027H	0.000	200	0%	133	29.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KDR	3791	genome.wustl.edu	37	4	55973917	55973917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.A467T	0.137	337	0.3%	277	32.9%	6	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_IG,superfamily_SSF48726
KDR	3791	genome.wustl.edu	37	4	55974054	55974054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002253.2	-1	reviewed	p.P421L	1.000	384	0%	296	15.5%	5	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF48726
EXOC1	55763	genome.wustl.edu	37	4	56734645	56734645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024924.1	+1	reviewed	p.A187T	1.000	163	0%	97	22.7%	14	28.5%	benign(0.091)	tolerated(0.38)	neutral(0.024)	HMMPfam_Sec3
CEP135	9662	genome.wustl.edu	37	4	56883864	56883864	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025009.3	+1	validated	p.K951	0.964	146	0%	106	23.6%	6	33.3%	-	-	-	superfamily_Prefoldin
PPAT	5471	genome.wustl.edu	37	4	57269567	57269567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002703.3	-1	reviewed	p.L135I	1.000	127	0%	72	27.8%	22	54.5%	benign(0.244)	tolerated(0.11)	neutral(0.296)	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SRP72	6731	genome.wustl.edu	37	4	57342839	57342839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006947.3	+1	validated	p.L205I	1.000	138	0%	85	24.7%	96	41.6%	possibly_damaging(0.848)	tolerated(0.29)	neutral(0.355)	HMMPfam_TPR_1,superfamily_SSF48452
ARL9	132946	genome.wustl.edu	37	4	57377433	57377433	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360096	+1	known	p.V43G	1.000	197	0%	113	33.6%	14	85.7%	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
NOA1	84273	genome.wustl.edu	37	4	57832876	57832876	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032313.2	-1	provisional	p.V558	0.953	228	0%	137	32.1%	90	45.5%	-	-	-	NULL
POLR2B	5431	genome.wustl.edu	37	4	57873168	57873168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000938.1	+1	reviewed	p.Q468H	1.000	194	0%	130	16.2%	46	21.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RNA_pol_Rpb2_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LPHN3	23284	genome.wustl.edu	37	4	62453016	62453016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.L43I	1.000	88	0%	58	31%	0	-	probably_damaging(0.995)	tolerated(0.23)	deleterious(0.499)	HMMPfam_Gal_Lectin
LPHN3	23284	genome.wustl.edu	37	4	62598610	62598610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.R178I	1.000	115	0%	64	29.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_OLF,HMMSmart_SM00284
LPHN3	23284	genome.wustl.edu	37	4	62778452	62778452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.R629C	1.000	133	0%	110	32.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Family A G protein-coupled receptor-like
LPHN3	23284	genome.wustl.edu	37	4	62849146	62849146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.A953T	1.000	186	0%	115	28.7%	0	-	possibly_damaging(0.948)	deleterious(0.03)	deleterious(0.756)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
LOC644578	644578	genome.wustl.edu	37	4	64216346	64216346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_927694.2	+1	model	p.R227C	0.003	119	0%	62	9.7%	0	-	-	-	-	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
EPHA5	2044	genome.wustl.edu	37	4	66197714	66197714	+	Silent	SNP	G	G	A	rs188116759	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.D995	1.000	330	0.3%	245	26.5%	0	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
EPHA5	2044	genome.wustl.edu	37	4	66201844	66201844	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	e16-1	1.000	152	0%	123	19.5%	0	-	-	-	-	-
CENPC1	1060	genome.wustl.edu	37	4	68355694	68355694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.Q887H	0.047	54	0%	35	37.1%	11	45.4%	possibly_damaging(0.442)	deleterious(0.05)	deleterious(0.490)	superfamily_RmlC-like cupins,HMMPfam_Cupin_2
CENPC1	1060	genome.wustl.edu	37	4	68359661	68359661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.R744H	0.998	70	0%	41	17.1%	16	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CENPC1	1060	genome.wustl.edu	37	4	68406716	68406716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.D40Y	1.000	116	0%	60	18.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBA6	55236	genome.wustl.edu	37	4	68500236	68500236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018227.5	-1	validated	p.R615W	1.000	169	0%	91	29.7%	12	91.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_UBA_e1_thiolCys
TMPRSS11D	9407	genome.wustl.edu	37	4	68719897	68719897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004262.2	-1	reviewed	p.K46N	0.006	235	0%	162	27.8%	0	-	probably_damaging(0.957)	deleterious(0.03)	deleterious(0.765)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
TMPRSS11B	132724	genome.wustl.edu	37	4	69097079	69097079	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182502.3	-1	validated	p.A176	0.275	206	0%	145	33.1%	0	-	-	-	-	superfamily_Trypsin-like serine proteases
TMPRSS11B	132724	genome.wustl.edu	37	4	69107443	69107443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182502.3	-1	validated	p.V30I	0.781	184	0%	170	27.1%	0	-	benign(0.137)	tolerated(0.3)	neutral(0.040)	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69188545	69188545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031732.2	-1	validated	p.R508H	1.000	214	0%	107	25.2%	65	40%	unknown(0)	deleterious(0)	-	NULL
UGT2B17	7367	genome.wustl.edu	37	4	69403406	69403406	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077.3	-1	reviewed	p.T510	0.001	295	0%	211	61.6%	0	-	-	-	-	HMMPfam_UDPGT
UGT2B10	7365	genome.wustl.edu	37	4	69696346	69696346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075.4	+1	validated	p.R446G	0.267	539	0%	467	26.3%	0	-	benign(0.024)	tolerated(0.06)	neutral(0.324)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A3	79799	genome.wustl.edu	37	4	69798414	69798414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024743.3	-1	validated	p.L310M	0.001	609	0%	520	34.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2B28	54490	genome.wustl.edu	37	4	70288699	70288699	+	Missense_Mutation	SNP	C	C	T	rs182367316	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381079	+1	known	p.R469C	1.000	600	0%	418	28%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1B1	27284	genome.wustl.edu	37	4	70599908	70599908	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014465.3	-1	reviewed	p.Q150	0.000	202	0%	85	24.7%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
STATH	6779	genome.wustl.edu	37	4	70866591	70866591	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003154.2	+1	validated	p.G38	0.000	392	0.5%	242	25.2%	0	-	-	-	-	HMMPfam_Statherin
MUC7	4589	genome.wustl.edu	37	4	71346667	71346667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145006.1	+1	reviewed	p.R69H	0.000	940	0%	638	30.1%	2	0%	unknown(0)	tolerated(0.17)	-	NULL
AMBN	258	genome.wustl.edu	37	4	71472041	71472041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016519.4	+1	reviewed	p.T313I	0.935	111	0%	102	27.5%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_Amelin,HMMSmart_SM00817
ENAM	10117	genome.wustl.edu	37	4	71507731	71507731	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031889.2	+1	reviewed	e8-1	1.000	988	0.1%	691	12.2%	0	-	-	-	-	-
UTP3	57050	genome.wustl.edu	37	4	71554547	71554547	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020368.2	+1	validated	p.F51	0.974	74	1.4%	41	43.9%	33	51.5%	-	-	-	NULL
NPFFR2	10886	genome.wustl.edu	37	4	73013255	73013255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004885.2	+1	reviewed	p.P432H	1.000	323	0%	223	29.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD17	26057	genome.wustl.edu	37	4	74124225	74124225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.M54T	1.000	8	0.000	9	0.444	4	75%	unknown(0)	deleterious(0)	-	NULL
AFP	174	genome.wustl.edu	37	4	74309119	74309119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134.1	+1	reviewed	p.C224Y	0.877	259	0%	152	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Serum_albumin,HMMPfam_Serum_albumin,HMMSmart_ALBUMIN
AFM	173	genome.wustl.edu	37	4	74350011	74350011	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001133.2	+1	reviewed	p.A58	0.721	268	0%	191	25.7%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
AFM	173	genome.wustl.edu	37	4	74357675	74357675	+	Silent	SNP	C	C	T	rs141880946	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001133.2	+1	reviewed	p.R310	0.000	239	0%	184	19%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
PPBPL1	728045	genome.wustl.edu	37	4	74713622	74713622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424295	+1	known	p.A14T	0.000	78	0%	38	18.4%	0	-	-	-	-	NULL
PF4V1	5197	genome.wustl.edu	37	4	74719141	74719141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002620.2	+1	provisional	p.A21V	0.126	22	0%	16	31.2%	2	0%	unknown(0)	tolerated(0.16)	-	NULL
ENSG00000245879	0	genome.wustl.edu	37	4	74964265	74964265	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500608	+1	known	NULL	0.000	63	0%	22	31.8%	0	-	-	-	-	-
BTC	685	genome.wustl.edu	37	4	75681166	75681166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001729.2	-1	reviewed	p.R62W	0.003	318	0.3%	181	30.9%	3	0%	benign(0.037)	tolerated(0.2)	neutral(0.051)	superfamily_SSF57196
CXCL10	3627	genome.wustl.edu	37	4	76944563	76944563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001565.2	-1	reviewed	p.I8V	0.004	335	0.3%	204	28.9%	35	2.8%	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
NUP54	53371	genome.wustl.edu	37	4	77038816	77038816	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017426.2	-1	reviewed	e11+1	1.000	186	0%	124	15.3%	0	-	-	-	-	-
NUP54	53371	genome.wustl.edu	37	4	77039333	77039333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017426.2	-1	reviewed	p.Q393H	1.000	166	0%	116	25.9%	47	44.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCARB2	950	genome.wustl.edu	37	4	77100695	77100695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005506.2	-1	reviewed	p.S196Y	0.244	332	0%	206	26.2%	139	38.1%	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	HMMPfam_CD36
CCDC158	339965	genome.wustl.edu	37	4	77247111	77247111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042784.1	-1	validated	p.S1019Y	1.000	408	0.5%	236	28.8%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77272228	77272228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042784.1	-1	validated	p.R862H	0.998	749	0%	418	14.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CCDC158	339965	genome.wustl.edu	37	4	77292626	77292626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042784.1	-1	validated	p.R365C	0.998	161	0%	116	33.6%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
SEPT11	55752	genome.wustl.edu	37	4	77933061	77933061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018243.2	+1	validated	p.K171R	1.000	384	0.3%	201	18.4%	32	18.7%	benign(0.027)	tolerated(0.53)	neutral(0.009)	HMMPfam_Septin,superfamily_SSF52540
FRAS1	80144	genome.wustl.edu	37	4	79188452	79188452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.G283R	0.995	90	0%	45	33.3%	1	0%	benign(0.229)	tolerated(0.3)	neutral(0.052)	NULL
FRAS1	80144	genome.wustl.edu	37	4	79385669	79385669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025074.6	+1	reviewed	p.R2320W	1.000	331	0%	213	27.2%	14	57.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
BMP2K	55589	genome.wustl.edu	37	4	79786755	79786755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198892.1	+1	reviewed	p.R371K	1.000	297	0%	195	22.1%	12	25%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
GK2	2712	genome.wustl.edu	37	4	80328414	80328414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033214.2	-1	validated	p.A314V	0.004	599	0%	428	29.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_FGGY_C,superfamily_SSF53067
ANTXR2	118429	genome.wustl.edu	37	4	80899267	80899267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145794.1	-1	reviewed	p.A414D	1.000	170	0%	95	37.9%	16	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ant_C
C4orf22	255119	genome.wustl.edu	37	4	81256979	81256979	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152770.1	+1	predicted	p.A19	1.000	160	0%	100	17%	0	-	-	-	-	NULL
PRKG2	5593	genome.wustl.edu	37	4	82092923	82092923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006259.1	-1	provisional	p.L222	0.998	295	0%	191	24.1%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
RASGEF1B	153020	genome.wustl.edu	37	4	82366991	82366991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152545.1	-1	provisional	p.S244N	0.997	133	0%	84	31%	13	23%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
WDFY3	23001	genome.wustl.edu	37	4	85617182	85617182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.P2948T	1.000	277	0%	187	10.7%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
WDFY3	23001	genome.wustl.edu	37	4	85645693	85645693	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.R2443*	1.000	281	0%	157	12.7%	6	33.3%	-	-	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85674932	85674932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.A1886V	0.851	158	0%	116	16.4%	8	50%	benign(0)	tolerated(1)	-	NULL
WDFY3	23001	genome.wustl.edu	37	4	85687154	85687154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.L1666P	1.000	532	0%	323	20.1%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85717840	85717840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.H1001Y	1.000	304	0%	195	12.3%	2	50%	benign(0.031)	tolerated(0.28)	neutral(0.033)	NULL
WDFY3	23001	genome.wustl.edu	37	4	85731098	85731098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.R763W	0.967	358	0%	252	29.8%	4	75%	possibly_damaging(0.906)	deleterious(0.02)	deleterious(0.742)	superfamily_ARM repeat
WDFY3	23001	genome.wustl.edu	37	4	85731102	85731102	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.T761	0.020	370	0%	252	36.9%	4	25%	-	-	-	superfamily_ARM repeat
ARHGAP24	83478	genome.wustl.edu	37	4	86921811	86921811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025616.2	+1	validated	p.T728M	1.000	468	0.2%	298	13.1%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87622954	87622954	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.E399*	1.000	390	0.3%	202	27.7%	0	-	-	-	-	NULL
PTPN13	5783	genome.wustl.edu	37	4	87686580	87686580	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.G1399	1.000	37	0%	40	17.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
PTPN13	5783	genome.wustl.edu	37	4	87686641	87686641	+	Missense_Mutation	SNP	G	G	T	rs147245492	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.G1420C	1.000	36	0%	34	32.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
AFF1	4299	genome.wustl.edu	37	4	88056766	88056766	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005935.2	+1	validated	p.T1182	0.185	50	0%	29	48.3%	27	33.3%	-	-	-	HMMPfam_AF-4
KLHL8	57563	genome.wustl.edu	37	4	88085167	88085167	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.W534*	1.000	450	0%	220	29.5%	11	18.1%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL8	57563	genome.wustl.edu	37	4	88091266	88091266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020803.3	-1	validated	p.G501V	1.000	572	0.2%	326	28.2%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SPARCL1	8404	genome.wustl.edu	37	4	88415091	88415091	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128310.1	-1	validated	p.H287	0.047	964	0%	640	26.4%	75	0%	-	-	-	NULL
DSPP	1834	genome.wustl.edu	37	4	88533267	88533267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014208.3	+1	reviewed	p.S21I	0.003	96	0%	44	18.2%	0	-	benign(0.014)	-	-	NULL
MEPE	56955	genome.wustl.edu	37	4	88766306	88766306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020203.3	+1	validated	p.L96M	0.000	291	0%	179	27.4%	0	-	benign(0.076)	tolerated(0.27)	neutral(0.039)	HMMPfam_Osteoregulin
SPP1	6696	genome.wustl.edu	37	4	88903928	88903928	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040058.1	+1	validated	p.S275	0.860	265	0%	142	22.5%	158	20.2%	-	-	-	HMMPfam_Osteopontin,HMMSmart_SM00017
ABCG2	9429	genome.wustl.edu	37	4	89022413	89022413	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004827.2	-1	reviewed	p.E446fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_ABC2_membrane
HERC6	55008	genome.wustl.edu	37	4	89311945	89311945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.S193I	1.000	72	0%	29	27.6%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC6	55008	genome.wustl.edu	37	4	89319361	89319361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.Q364H	0.948	39	0%	21	38.1%	13	0%	possibly_damaging(0.673)	tolerated(0.14)	deleterious(0.488)	superfamily_RCC1/BLIP-II
HERC3	8916	genome.wustl.edu	37	4	89527012	89527012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014606.1	+1	provisional	p.G13V	1.000	237	0%	135	34.8%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RCC1/BLIP-II
NAP1L5	266812	genome.wustl.edu	37	4	89618474	89618474	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153757.2	-1	validated	p.Y144	0.023	93	0%	79	27.8%	0	-	-	-	-	HMMPfam_NAP
FAM13A	10144	genome.wustl.edu	37	4	89660210	89660210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014883.2	-1	validated	p.L845I	1.000	98	0%	72	29.2%	10	40%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
FAM13A	10144	genome.wustl.edu	37	4	89708998	89708998	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014883.2	-1	validated	p.E393*	0.998	308	0%	220	26.8%	11	27.2%	-	-	-	NULL
TIGD2	166815	genome.wustl.edu	37	4	90035291	90035291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145715.2	+1	reviewed	p.F389S	0.996	172	0%	81	22.2%	13	53.8%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	NULL
GPRIN3	285513	genome.wustl.edu	37	4	90170991	90170991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198281.2	-1	validated	p.P91S	0.000	166	0%	108	27.8%	0	-	benign(0)	tolerated(1)	-	NULL
SMARCAD1	56916	genome.wustl.edu	37	4	95147397	95147397	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.C106*	0.996	352	0.3%	265	22.6%	8	0%	-	-	-	NULL
SMARCAD1	56916	genome.wustl.edu	37	4	95198216	95198216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128429.1	+1	validated	p.N663T	1.000	368	0.3%	228	22.8%	13	69.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
UNC5C	8633	genome.wustl.edu	37	4	96140241	96140241	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003728.2	-1	reviewed	p.S508	0.529	316	0%	194	17%	0	-	-	-	-	NULL
UNC5C	8633	genome.wustl.edu	37	4	96141271	96141271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003728.2	-1	reviewed	p.V389I	0.987	204	0%	125	22.4%	0	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	NULL
UNC5C	8633	genome.wustl.edu	37	4	96163628	96163628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003728.2	-1	reviewed	p.G354S	1.000	80	0%	32	21.9%	0	-	possibly_damaging(0.468)	deleterious(0)	deleterious(0.598)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADH6	130	genome.wustl.edu	37	4	100125395	100125395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102470.1	-1	reviewed	p.R370H	0.993	229	0%	170	29.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_GroES_like
ADH1B	125	genome.wustl.edu	37	4	100242479	100242479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000668.4	-1	reviewed	p.A4T	0.995	313	0%	252	22.6%	0	-	unknown(0)	-	-	superfamily_GroES-like
MTTP	4547	genome.wustl.edu	37	4	100532502	100532502	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000253.2	+1	reviewed	p.S627	0.000	506	0.2%	397	29%	0	-	-	-	-	NULL
DNAJB14	79982	genome.wustl.edu	37	4	100844197	100844197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031723.2	-1	validated	p.K151Q	1.000	61	0%	37	10.8%	13	0%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1
SLC9B1	150159	genome.wustl.edu	37	4	103870528	103870528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139173.2	-1	reviewed	p.L90I	0.765	532	0.2%	367	24.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
CENPE	1062	genome.wustl.edu	37	4	104098174	104098174	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.C424	0.004	239	0%	148	29.7%	3	33.3%	-	-	-	NULL
CENPE	1062	genome.wustl.edu	37	4	104116319	104116319	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.L143	0.903	399	0.3%	240	25%	3	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TACR3	6870	genome.wustl.edu	37	4	104510853	104510853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001059.1	-1	reviewed	p.D462Y	1.000	383	0%	246	28.9%	0	-	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
TET2	54790	genome.wustl.edu	37	4	106156731	106156731	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.R544	0.000	434	0%	280	28.2%	6	16.6%	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106156840	106156840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.R581C	0.009	451	0%	293	25.9%	7	42.8%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
GSTCD	79807	genome.wustl.edu	37	4	106640438	106640438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031720.2	+1	validated	p.K216N	0.000	402	0%	286	34.6%	8	50%	benign(0.156)	deleterious(0.05)	neutral(0.359)	superfamily_Glutathione S-transferase (GST) C-terminal domain
PAPSS1	9061	genome.wustl.edu	37	4	108574725	108574725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005443.4	-1	validated	p.V387F	1.000	254	0%	210	35.2%	39	38.4%	benign(0.078)	deleterious(0.02)	neutral(0.389)	HMMPfam_ATP-sulfurylase,superfamily_PUA domain-like
SGMS2	166929	genome.wustl.edu	37	4	108831617	108831617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136257.1	+1	reviewed	p.P336S	1.000	102	0%	125	33.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HADH	3033	genome.wustl.edu	37	4	108940740	108940740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005327.4	+1	reviewed	p.S155I	0.433	519	0%	349	20.9%	175	44.5%	benign(0.12)	deleterious(0.01)	neutral(0.415)	HMMPfam_3HCDH_N,superfamily_NAD(P)-binding Rossmann-fold domains
AGXT2L1	64850	genome.wustl.edu	37	4	109664978	109664978	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031279.3	-1	validated	p.S446	0.002	182	0%	106	11.3%	0	-	-	-	-	NULL
AGXT2L1	64850	genome.wustl.edu	37	4	109667594	109667594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031279.3	-1	validated	p.A422T	1.000	94	0%	55	23.6%	0	-	possibly_damaging(0.872)	deleterious(0.01)	deleterious(0.745)	superfamily_PLP-dependent transferases
SEC24B	10427	genome.wustl.edu	37	4	110412520	110412520	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.P401	0.092	288	0%	180	18.3%	37	51.3%	-	-	-	NULL
PLA2G12A	81579	genome.wustl.edu	37	4	110635604	110635604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030821.4	-1	validated	p.G167C	1.000	522	0%	326	30.1%	42	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLA2G12,superfamily_Phospholipase A2 PLA2
EGF	1950	genome.wustl.edu	37	4	110890269	110890269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001963.4	+1	reviewed	p.D573G	1.000	265	0%	141	33.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PITX2	5308	genome.wustl.edu	37	4	111539729	111539729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000325.5	-1	reviewed	p.D176V	1.000	173	0.6%	90	35.6%	0	-	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	NULL
AP1AR	55435	genome.wustl.edu	37	4	113189561	113189561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018569.4	+1	validated	p.R302Q	1.000	145	0%	90	33.3%	18	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113352323	113352323	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.T540	0.000	337	0%	243	30.9%	4	0%	-	-	-	NULL
LARP7	51574	genome.wustl.edu	37	4	113575287	113575287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015454.1	+1	validated	p.P547H	1.000	173	0%	96	29.2%	48	47.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_RRM_3,superfamily_RNA-binding domain RBD
ANK2	287	genome.wustl.edu	37	4	114120177	114120177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.T99I	1.000	98	0%	78	34.6%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANK2	287	genome.wustl.edu	37	4	114277815	114277815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.L2681I	0.533	413	0%	338	28.1%	0	-	probably_damaging(0.991)	-	-	NULL
METTL14	57721	genome.wustl.edu	37	4	119621742	119621742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020961.2	+1	provisional	p.R228Q	0.954	422	0%	330	28.2%	7	28.5%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMPfam_MT-A70
SEC24D	9871	genome.wustl.edu	37	4	119738442	119738442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.S125I	0.001	393	0%	234	15.4%	46	17.3%	possibly_damaging(0.849)	deleterious(0.02)	deleterious(0.709)	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119952502	119952502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133477.2	+1	validated	p.A858T	0.001	284	0%	149	35.6%	15	0%	benign(0.287)	deleterious(0.02)	deleterious(0.472)	NULL
USP53	54532	genome.wustl.edu	37	4	120192849	120192849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019050.2	+1	validated	p.N612H	0.111	245	0%	155	17.4%	29	6.8%	possibly_damaging(0.929)	deleterious(0.03)	deleterious(0.740)	NULL
NDNF	79625	genome.wustl.edu	37	4	121958330	121958330	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024574.3	-1	validated	p.R266C	0.971	191	0%	149	32.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_FN3,superfamily_FN_III-like
TMEM155	132332	genome.wustl.edu	37	4	122682768	122682768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152399.2	-1	validated	p.A46V	0.416	245	0.4%	122	18%	1	0%	benign(0.355)	-	-	NULL
CCNA2	890	genome.wustl.edu	37	4	122739981	122739981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001237.3	-1	validated	p.L364I	1.000	168	0%	87	33.3%	77	49.3%	benign(0.05)	tolerated(0.07)	neutral(0.322)	HMMPfam_Cyclin_C,HMMSmart_SM00385,superfamily_Cyclin-like
BBS7	55212	genome.wustl.edu	37	4	122747044	122747044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176824.1	-1	reviewed	p.A707T	0.958	94	0%	50	36%	4	25%	benign(0)	tolerated(1)	-	NULL
TRPC3	7222	genome.wustl.edu	37	4	122825566	122825566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.V722I	1.000	127	0%	95	23.2%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_Ion_trans
TRPC3	7222	genome.wustl.edu	37	4	122853583	122853583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.R277M	0.998	78	0%	31	22.6%	1	0%	benign(0.013)	tolerated(0.12)	neutral(0.261)	HMMPfam_TRP_2
KIAA1109	84162	genome.wustl.edu	37	4	123147918	123147918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.E950D	0.987	526	0%	262	27.9%	2	50%	possibly_damaging(0.72)	deleterious(0.01)	deleterious(0.667)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123207926	123207926	+	Missense_Mutation	SNP	C	C	T	rs45511998	byCluster	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.R3090C	1.000	161	0%	110	26.4%	3	33.3%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123257379	123257379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.A3961T	1.000	157	0%	142	15.5%	14	7.1%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123267794	123267794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000306802	+1	known	p.G626D	0.033	396	0%	332	28.6%	27	59.2%	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123267879	123267879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015312.3	+1	reviewed	p.R4279C	1.000	399	0%	320	31.6%	17	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123301294	123301294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.L24M	0.999	175	0%	96	33.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123336626	123336626	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.L448	1.000	537	0%	386	33.9%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_SM00552
ADAD1	132612	genome.wustl.edu	37	4	123350812	123350812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.C550Y	0.174	309	0%	189	28.6%	0	-	benign(0.026)	tolerated(0.15)	neutral(0.242)	HMMPfam_A_deamin,HMMSmart_SM00552
SPATA5	166378	genome.wustl.edu	37	4	123949346	123949346	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145207.2	+1	validated	p.S625	1.000	633	0%	372	25.3%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125592811	125592811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.C541R	1.000	367	0%	238	25.6%	5	20%	benign(0.024)	tolerated(0.5)	neutral(0.011)	HMMPfam_Ank,superfamily_ANK
FAT4	79633	genome.wustl.edu	37	4	126242643	126242643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.A1693T	0.999	273	0%	164	24.4%	1	0%	possibly_damaging(0.948)	tolerated(0.08)	deleterious(0.691)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126336074	126336074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.G1986C	1.000	353	0%	279	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126372316	126372316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R3382I	0.504	387	0.3%	275	29.5%	1	100%	probably_damaging(0.958)	deleterious(0.01)	deleterious(0.807)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126373181	126373181	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.S3670	0.990	267	0.4%	162	31.5%	2	0%	-	-	-	superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126373818	126373818	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.G3883*	1.000	116	0%	73	20.5%	3	0%	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FAT4	79633	genome.wustl.edu	37	4	126412018	126412018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.G4681C	0.882	339	0%	176	25.6%	2	0%	possibly_damaging(0.472)	tolerated(0.1)	neutral(0.443)	NULL
FAT4	79633	genome.wustl.edu	37	4	126412242	126412242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.S4755R	0.997	176	0%	93	30.1%	2	100%	possibly_damaging(0.718)	tolerated(0.06)	deleterious(0.583)	NULL
INTU	27152	genome.wustl.edu	37	4	128564679	128564679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015693.3	+1	validated	p.D50E	0.982	403	0%	306	29.7%	3	0%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
SLC25A31	83447	genome.wustl.edu	37	4	128694558	128694558	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031291.2	+1	validated	p.R259	0.997	144	0%	72	11.1%	0	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
HSPA4L	22824	genome.wustl.edu	37	4	128719745	128719745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014278.2	+1	provisional	p.R104W	1.000	190	0%	146	34.2%	20	40%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_HSP70,superfamily_SSF53067
MFSD8	256471	genome.wustl.edu	37	4	128861055	128861055	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152778.2	-1	reviewed	p.S217	0.037	184	0%	98	23.5%	7	57.1%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
CCRN4L	25819	genome.wustl.edu	37	4	139966017	139966017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012118.2	+1	reviewed	p.H229Y	0.940	288	0.3%	156	25%	20	30%	benign(0.001)	tolerated(0.99)	-	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
NAA15	80155	genome.wustl.edu	37	4	140297559	140297559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.P663L	1.000	136	0%	85	15.3%	41	21.9%	probably_damaging(1)	tolerated(0.57)	deleterious(0.506)	superfamily_TPR-like
NAA15	80155	genome.wustl.edu	37	4	140299982	140299982	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057175.3	+1	validated	p.E710A	1.000	204	0%	168	30.4%	39	28.2%	benign(0.314)	tolerated(0.6)	neutral(0.103)	superfamily_TPR-like
MAML3	55534	genome.wustl.edu	37	4	140810611	140810611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018717.4	-1	validated	p.R660M	1.000	421	0%	188	23.4%	7	28.5%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
CLGN	1047	genome.wustl.edu	37	4	141321545	141321545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130675.1	-1	reviewed	p.F220L	1.000	249	0%	133	20.3%	9	22.2%	benign(0.406)	tolerated(0.56)	neutral(0.137)	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases
TBC1D9	23158	genome.wustl.edu	37	4	141578884	141578884	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.G668	0.319	502	0.2%	309	34.6%	13	38.4%	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TBC1D9	23158	genome.wustl.edu	37	4	141590886	141590886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.R447C	1.000	88	0%	40	17.5%	10	0%	possibly_damaging(0.92)	tolerated(0.09)	deleterious(0.667)	NULL
RNF150	57484	genome.wustl.edu	37	4	141789503	141789503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020724.1	-1	validated	p.S410Y	0.999	168	0%	103	31.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RNF150	57484	genome.wustl.edu	37	4	141888805	141888805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020724.1	-1	validated	p.R236Q	1.000	604	0.2%	495	32.5%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ZNF330	27309	genome.wustl.edu	37	4	142143572	142143572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014487.4	+1	validated	p.R16Q	0.992	150	0%	84	23.8%	37	40.5%	benign(0.404)	deleterious(0.04)	deleterious(0.479)	HMMPfam_NOA36
INPP4B	8821	genome.wustl.edu	37	4	143226667	143226667	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101669.1	-1	reviewed	p.S149	0.970	1092	0%	909	26.8%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
USP38	84640	genome.wustl.edu	37	4	144135073	144135073	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.A648	0.243	515	0.2%	373	30.6%	13	53.8%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
SMAD1	4086	genome.wustl.edu	37	4	146435834	146435834	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003688.1	+1	reviewed	p.G23	0.550	246	0%	162	23.5%	17	47%	-	-	-	superfamily_SMAD MH1 domain
POU4F2	5458	genome.wustl.edu	37	4	147561895	147561895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004575.2	+1	validated	p.V389M	1.000	282	0%	123	26%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
TTC29	83894	genome.wustl.edu	37	4	147795954	147795954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031956.2	-1	validated	p.R238I	1.000	100	0%	90	13.3%	2	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	superfamily_TPR-like
PRMT10	90826	genome.wustl.edu	37	4	148589783	148589783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138364.2	-1	provisional	p.S287I	0.854	80	1.3%	48	39.6%	5	80%	benign(0.004)	tolerated(0.31)	neutral(0.027)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ARHGAP10	79658	genome.wustl.edu	37	4	148985621	148985621	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507661	+1	known	p.G372R	0.387	120	0%	63	22.2%	10	20%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
NR3C2	4306	genome.wustl.edu	37	4	149002597	149002597	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000901.4	-1	reviewed	p.A951	0.617	125	0%	60	28.3%	5	60%	-	-	-	HMMPfam_Hormone_recep,superfamily_Str_ncl_receptor
DCLK2	166614	genome.wustl.edu	37	4	151153925	151153925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.R504K	1.000	637	0%	386	24.9%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAB21L2	10586	genome.wustl.edu	37	4	151504960	151504960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006439.4	+1	reviewed	p.R260H	1.000	85	0%	37	10.8%	0	-	possibly_damaging(0.925)	deleterious(0.02)	deleterious(0.756)	HMMPfam_Mab-21
LRBA	987	genome.wustl.edu	37	4	151511895	151511895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.V2066M	1.000	267	0.4%	180	14.4%	27	48.1%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
LRBA	987	genome.wustl.edu	37	4	151771925	151771925	+	Missense_Mutation	SNP	G	G	A	rs181605052	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.L1319F	1.000	183	0%	147	21.8%	16	87.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151773128	151773128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.D1245G	1.000	263	0.4%	208	21.2%	7	100%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151789391	151789391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.R839H	1.000	324	0.3%	255	24.7%	13	23%	benign(0.073)	deleterious(0.03)	neutral(0.369)	superfamily_ARM repeat
LRBA	987	genome.wustl.edu	37	4	151821207	151821207	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006726.2	-1	validated	p.G640*	1.000	216	0%	150	23.3%	7	14.2%	-	-	-	superfamily_ARM repeat
SH3D19	152503	genome.wustl.edu	37	4	152096448	152096448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009555.3	-1	validated	p.Q23R	0.998	409	0%	266	30.1%	7	28.5%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
PET112	5188	genome.wustl.edu	37	4	152592448	152592448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004564.2	-1	validated	p.D518Y	0.174	275	0.4%	115	24.3%	29	58.6%	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	superfamily_GatB/YqeY domain,HMMPfam_GatB_Yqey
FBXW7	55294	genome.wustl.edu	37	4	153249526	153249526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.V418M	1.000	620	0%	457	30.4%	8	37.5%	benign(0.226)	tolerated(0.1)	neutral(0.309)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXW7	55294	genome.wustl.edu	37	4	153259076	153259076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.P247T	1.000	253	0%	166	26.5%	3	33.3%	benign(0.012)	tolerated(0.49)	neutral(0.011)	superfamily_WD40 repeat-like
ARFIP1	27236	genome.wustl.edu	37	4	153809305	153809305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025595.1	+1	validated	p.R271H	1.000	216	0%	173	28.3%	61	37.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arfaptin
ARFIP1	27236	genome.wustl.edu	37	4	153809415	153809415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025595.1	+1	validated	p.R308C	1.000	162	0%	116	12.9%	69	14.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arfaptin
FHDC1	85462	genome.wustl.edu	37	4	153897002	153897002	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033393.2	+1	validated	p.P853	0.000	96	0%	47	19.1%	2	50%	-	-	-	NULL
FHDC1	85462	genome.wustl.edu	37	4	153897455	153897455	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033393.2	+1	validated	p.R1004	0.678	41	0%	32	40.6%	7	28.5%	-	-	-	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154519825	154519825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.G735D	1.000	95	0%	73	12.3%	5	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIAA0922	23240	genome.wustl.edu	37	4	154523386	154523386	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015196.3	+1	validated	p.S782	0.034	473	0%	408	32.4%	4	100%	-	-	-	NULL
DCHS2	54798	genome.wustl.edu	37	4	155161728	155161728	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017639.3	-1	validated	p.V1985	1.000	267	0%	266	25.9%	2	0%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
FGA	2243	genome.wustl.edu	37	4	155505976	155505976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000508.3	-1	reviewed	p.D634G	1.000	195	0%	113	31.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
GLRB	2743	genome.wustl.edu	37	4	157999285	157999285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000824.4	+1	reviewed	p.Y37H	1.000	538	0%	294	23.8%	16	62.5%	possibly_damaging(0.614)	tolerated(0.11)	deleterious(0.485)	NULL
GRIA2	2891	genome.wustl.edu	37	4	158224919	158224919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.A149T	1.000	665	0.3%	474	29.3%	1	100%	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158233939	158233939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.R193Q	1.000	287	0%	189	19.6%	3	0%	probably_damaging(0.994)	tolerated(0.16)	deleterious(0.512)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158242639	158242639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.V257D	0.998	470	0%	301	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_SSF53822
GRIA2	2891	genome.wustl.edu	37	4	158257900	158257900	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	e11+1	1.000	476	0%	347	30.3%	0	-	-	-	-	-
GRIA2	2891	genome.wustl.edu	37	4	158281265	158281265	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510854	+1	known	p.W84*	1.000	170	0%	127	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
ETFDH	2110	genome.wustl.edu	37	4	159606354	159606354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.G197C	1.000	371	0%	248	12.1%	11	27.2%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_FAD/NAD(P)-binding domain
ETFDH	2110	genome.wustl.edu	37	4	159618748	159618748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.R290I	0.999	472	0.2%	316	11.4%	17	11.7%	benign(0.045)	deleterious(0.04)	neutral(0.351)	superfamily_FAD/NAD(P)-binding domain
ETFDH	2110	genome.wustl.edu	37	4	159624622	159624622	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.S388	0.988	268	0%	188	29.8%	21	47.6%	-	-	-	superfamily_FAD/NAD(P)-binding domain
ETFDH	2110	genome.wustl.edu	37	4	159627439	159627439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.L462M	0.097	183	0%	102	20.6%	26	23%	possibly_damaging(0.615)	tolerated(0.09)	deleterious(0.510)	superfamily_FAD/NAD(P)-binding domain
PPID	5481	genome.wustl.edu	37	4	159631761	159631761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507213	-1	known	p.V41A	0.000	206	0%	128	11.7%	2	0%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160252898	160252898	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014247.2	+1	validated	p.G403	0.996	510	0%	343	12.5%	2	0%	-	-	-	HMMSmart_PDZ,superfamily_PDZ,superfamily_Ras_GEF
RAPGEF2	9693	genome.wustl.edu	37	4	160273843	160273843	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505026	+1	known	p.Y64*	0.954	207	0%	84	26.2%	11	27.2%	benign(0.108)	tolerated(0.08)	neutral(0.308)	NULL
NPY5R	4889	genome.wustl.edu	37	4	164271907	164271907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006174.2	+1	provisional	p.A161V	0.023	670	0%	354	11%	0	-	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM60	166655	genome.wustl.edu	37	4	165961269	165961269	+	Silent	SNP	C	C	T	rs187100243	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152620.2	+1	reviewed	p.S15	0.879	146	0%	68	29.4%	0	-	-	-	-	superfamily_SSF57850
KLHL2	11275	genome.wustl.edu	37	4	166235284	166235284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007246.3	+1	validated	p.Q525H	1.000	375	0.3%	210	26.7%	27	40.7%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
CPE	1363	genome.wustl.edu	37	4	166385617	166385617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001873.2	+1	reviewed	p.A128V	1.000	219	0%	161	29.2%	21	38%	benign(0.018)	tolerated(1)	neutral(0.001)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
CPE	1363	genome.wustl.edu	37	4	166418679	166418679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001873.2	+1	reviewed	p.E450*	1.000	265	0%	172	25.6%	22	54.5%	-	-	-	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain
TLL1	7092	genome.wustl.edu	37	4	166946492	166946492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012464.3	+1	reviewed	p.S356F	1.000	293	0%	187	32.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DDX60L	91351	genome.wustl.edu	37	4	169340478	169340478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012967.1	-1	validated	p.R862M	0.997	49	0%	45	15.6%	5	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PALLD	23022	genome.wustl.edu	37	4	169815741	169815741	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016081.3	+1	reviewed	p.Y704	1.000	83	0%	78	25.6%	50	36%	-	-	-	NULL
SH3RF1	57630	genome.wustl.edu	37	4	170038746	170038746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020870.3	-1	reviewed	p.P569S	0.998	254	0%	153	26.1%	14	50%	probably_damaging(0.986)	tolerated(0.43)	neutral(0.448)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170601272	170601272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173872.2	+1	validated	p.P78S	1.000	214	0%	115	14.8%	27	44.4%	benign(0.01)	tolerated(0.09)	neutral(0.297)	NULL
CLCN3	1182	genome.wustl.edu	37	4	170618796	170618796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173872.2	+1	validated	p.A492T	1.000	354	0%	211	25.1%	55	32.7%	possibly_damaging(0.734)	tolerated(0.33)	neutral(0.293)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
C4orf27	54969	genome.wustl.edu	37	4	170650841	170650841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017867.2	-1	validated	p.G310D	1.000	302	0.3%	161	24.8%	32	53.1%	possibly_damaging(0.878)	deleterious(0.04)	deleterious(0.691)	HMMPfam_DUF2228
GALNT7	51809	genome.wustl.edu	37	4	174169582	174169582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017423.2	+1	reviewed	p.R193H	1.000	323	0%	252	29.8%	49	53%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nucleotide-diphospho-sugar transferases
FBXO8	26269	genome.wustl.edu	37	4	175158731	175158731	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012180.2	-1	reviewed	p.C264	1.000	195	0%	115	22.6%	23	47.8%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
ADAM29	11086	genome.wustl.edu	37	4	175898280	175898280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130703.1	+1	reviewed	p.G535V	0.965	510	0%	299	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM29	11086	genome.wustl.edu	37	4	175898923	175898923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130703.1	+1	reviewed	p.Q749H	0.788	932	0.1%	577	16.1%	0	-	unknown(0)	deleterious(0.02)	-	NULL
WDR17	116966	genome.wustl.edu	37	4	177084383	177084383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170710.4	+1	reviewed	p.A1001S	0.038	256	0%	147	34.7%	0	-	benign(0.007)	tolerated(0.84)	neutral(0.001)	NULL
SPCS3	60559	genome.wustl.edu	37	4	177249433	177249433	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021928.3	+1	validated	p.H165	0.997	139	0%	100	26%	34	20.5%	-	-	-	HMMPfam_SPC22
VEGFC	7424	genome.wustl.edu	37	4	177609030	177609030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000280193	-1	known	p.H252	0.003	226	0%	163	22.7%	14	21.4%	-	-	-	NULL
VEGFC	7424	genome.wustl.edu	37	4	177649081	177649081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000280193	-1	known	p.E135K	1.000	261	0%	172	15.1%	9	0%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
AGA	175	genome.wustl.edu	37	4	178360729	178360729	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000027.3	-1	reviewed	e3+1	1.000	300	0%	198	24.2%	0	-	-	-	-	-
ODZ3	55714	genome.wustl.edu	37	4	183658161	183658161	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.A1056	0.988	682	0.1%	482	26.8%	3	66.6%	-	-	-	superfamily_ConA_like_lec_gl
ODZ3	55714	genome.wustl.edu	37	4	183675695	183675695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.P1392H	0.925	71	0%	32	37.5%	5	20%	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_ConA_like_lec_gl,superfamily_SSF101898,superfamily_SSF63829
ODZ3	55714	genome.wustl.edu	37	4	183676163	183676163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.S1548I	1.000	141	0%	69	37.7%	11	72.7%	possibly_damaging(0.823)	deleterious(0.02)	deleterious(0.695)	HMMPfam_RHS_repeat,superfamily_ConA_like_lec_gl,superfamily_SSF63829
DCTD	1635	genome.wustl.edu	37	4	183836131	183836131	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012732.1	-1	reviewed	p.D74	0.996	89	0%	56	19.6%	110	48.1%	-	-	-	HMMPfam_dCMP_cyt_deam_1,superfamily_Cytidine_deaminase-like
WWC2	80014	genome.wustl.edu	37	4	184202028	184202028	+	Missense_Mutation	SNP	C	C	A	rs186032528	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024949.5	+1	validated	p.P888T	0.211	26	0%	18	22.2%	1	0%	benign(0.009)	tolerated(0.84)	neutral(0.001)	NULL
CLDN22	53842	genome.wustl.edu	37	4	184240949	184240949	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111319.1	-1	provisional	p.A141	0.283	197	0%	92	19.6%	1	100%	-	-	-	HMMPfam_PMP22_Claudin
TRAPPC11	60684	genome.wustl.edu	37	4	184614217	184614217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021942.4	+1	validated	p.Q718H	1.000	244	0%	132	31.8%	25	32%	possibly_damaging(0.46)	tolerated(0.14)	neutral(0.400)	NULL
TRAPPC11	60684	genome.wustl.edu	37	4	184618723	184618723	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021942.4	+1	validated	e23+2	1.000	321	0.3%	175	32%	0	-	-	-	-	-
TRAPPC11	60684	genome.wustl.edu	37	4	184629569	184629569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021942.4	+1	validated	p.R1067C	1.000	201	0%	130	40%	41	36.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
STOX2	56977	genome.wustl.edu	37	4	184932241	184932241	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000506529	+1	known	p.G106C	0.000	43	0%	22	22.7%	0	-	-	-	-	NULL
IRF2	3660	genome.wustl.edu	37	4	185339814	185339814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002199.3	-1	reviewed	p.A79V	1.000	140	0%	80	32.5%	28	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
MLF1IP	79682	genome.wustl.edu	37	4	185652109	185652109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024629.3	-1	validated	p.K21E	0.139	164	0%	68	10.3%	4	0%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
ACSL1	2180	genome.wustl.edu	37	4	185678285	185678285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001995.2	-1	reviewed	p.K697N	0.954	890	0.1%	492	26.4%	9	55.5%	benign(0.008)	tolerated(0.21)	neutral(0.044)	NULL
ACSL1	2180	genome.wustl.edu	37	4	185689582	185689582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001995.2	-1	reviewed	p.A339V	1.000	248	0%	126	27%	12	58.3%	benign(0.084)	tolerated(0.05)	neutral(0.351)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
HELT	391723	genome.wustl.edu	37	4	185941704	185941704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029887.1	+1	provisional	p.Q254H	1.000	26	0%	18	38.9%	0	-	possibly_damaging(0.852)	tolerated(0.1)	deleterious(0.614)	NULL
KIAA1430	57587	genome.wustl.edu	37	4	186111451	186111451	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020827.1	-1	validated	p.N300	0.635	114	0%	71	23.9%	27	37%	-	-	-	NULL
UFSP2	55325	genome.wustl.edu	37	4	186336930	186336930	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018359.3	-1	validated	p.H142R	1.000	334	0.3%	207	31.9%	24	37.5%	possibly_damaging(0.49)	tolerated(0.63)	neutral(0.167)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186544278	186544278	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.L765	1.000	268	0%	146	32.9%	1	0%	-	-	-	NULL
TLR3	7098	genome.wustl.edu	37	4	187004111	187004111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003265.2	+1	reviewed	p.S424I	0.038	232	0%	139	24.5%	3	33.3%	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	superfamily_SSF52058
CYP4V2	285440	genome.wustl.edu	37	4	187130426	187130426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207352.3	+1	reviewed	p.G469C	1.000	409	0.2%	224	30.8%	6	16.6%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450
KLKB1	3818	genome.wustl.edu	37	4	187171484	187171484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000892.3	+1	reviewed	p.T229I	0.237	699	0.1%	329	28.6%	2	100%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1
MTNR1A	4543	genome.wustl.edu	37	4	187455368	187455368	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005958.3	-1	reviewed	p.S176	0.983	83	1.2%	51	21.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MTNR1A	4543	genome.wustl.edu	37	4	187455557	187455557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005958.3	-1	reviewed	p.G113	0.999	93	0%	42	31%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
FAT1	2195	genome.wustl.edu	37	4	187518280	187518280	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.H4138	1.000	144	0%	78	33.3%	26	50%	unknown(0)	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
FAT1	2195	genome.wustl.edu	37	4	187524889	187524889	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.G3597	0.052	93	0%	51	51%	32	50%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187538232	187538232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.G3001D	1.000	150	0%	71	32.4%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187540874	187540874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.A2289V	0.000	278	0%	138	29.7%	7	42.8%	benign(0.025)	tolerated(0.21)	neutral(0.045)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187541857	187541857	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.G1961	0.978	392	0%	193	26.4%	4	75%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187541875	187541875	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.S1955	0.058	380	0%	184	27.7%	8	62.5%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187542110	187542110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.P1877H	1.000	197	0%	70	25.7%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187628390	187628390	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.D864	1.000	282	0%	126	25.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
TRIML1	339976	genome.wustl.edu	37	4	189063561	189063561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.Q220H	1.000	228	0%	165	23%	0	-	benign(0.28)	deleterious(0)	deleterious(0.530)	NULL
TRIML1	339976	genome.wustl.edu	37	4	189065197	189065197	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.P256A	0.008	35	0%	29	41.4%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
TRIML1	339976	genome.wustl.edu	37	4	189068028	189068028	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178556.3	+1	provisional	p.E303	0.093	134	0%	91	22%	0	-	-	-	-	HMMSmart_PRY
TUBB7P	56604	genome.wustl.edu	37	4	190904398	190904398	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020040.3	-1	validated	p.N195	1.000	114	0%	63	11.1%	2	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
EXOC3	11336	genome.wustl.edu	37	5	453914	453914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503889	+1	known	p.Q135*	1.000	125	0%	56	32.1%	28	50%	probably_damaging(0.953)	tolerated(0.6)	neutral(0.401)	HMMPfam_Sec6
CEP72	55722	genome.wustl.edu	37	5	644471	644471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018140.3	+1	reviewed	p.L533F	0.159	59	0%	38	28.9%	3	33.3%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
ZDHHC11	79844	genome.wustl.edu	37	5	819640	819640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024786.2	-1	validated	p.Q382H	0.001	147	0%	77	24.7%	0	-	benign(0.253)	-	-	NULL
TERT	7015	genome.wustl.edu	37	5	1264629	1264629	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198253.2	-1	reviewed	p.D911	0.000	50	0%	14	35.7%	2	50%	-	-	-	NULL
LPCAT1	79888	genome.wustl.edu	37	5	1488544	1488544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024830.3	-1	validated	p.T210I	0.997	64	0%	35	11.4%	54	27.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
IRX2	153572	genome.wustl.edu	37	5	2749803	2749803	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134222.1	-1	validated	p.A116	0.997	28	0.000	6	0.667	1	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ADAMTS16	170690	genome.wustl.edu	37	5	5235246	5235246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.S657I	1.000	149	0%	56	30.4%	0	-	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5262872	5262872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.C922Y	0.982	223	0.4%	91	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS16	170690	genome.wustl.edu	37	5	5306663	5306663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.C1078Y	1.000	177	0%	118	31.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
KIAA0947	23379	genome.wustl.edu	37	5	5462194	5462194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.T916M	0.000	355	0%	174	25.9%	2	0%	benign(0.082)	deleterious(0.03)	neutral(0.370)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464054	5464054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.A1536V	0.000	176	0%	89	23.6%	10	50%	possibly_damaging(0.482)	deleterious(0.05)	deleterious(0.505)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464599	5464599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.A1718T	1.000	168	0%	102	26.5%	15	46.6%	possibly_damaging(0.737)	deleterious(0.02)	deleterious(0.653)	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5464963	5464963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.T1839M	0.000	109	0%	68	39.7%	18	55.5%	benign(0.081)	tolerated(0.08)	neutral(0.306)	NULL
NSUN2	54888	genome.wustl.edu	37	5	6607381	6607381	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017755.4	-1	validated	p.G480	0.000	361	0%	174	31.6%	63	33.3%	-	-	-	NULL
NSUN2	54888	genome.wustl.edu	37	5	6616959	6616959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017755.4	-1	validated	p.R301Q	1.000	273	0%	156	32.1%	64	45.3%	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
SRD5A1	6715	genome.wustl.edu	37	5	6662979	6662979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001047.2	+1	validated	p.E205K	0.999	151	0%	94	24.5%	11	45.4%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Steroid_dh
PAPD7	11044	genome.wustl.edu	37	5	6746450	6746450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006999.4	+1	reviewed	p.G207C	1.000	275	0%	165	37%	7	42.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain
ADCY2	108	genome.wustl.edu	37	5	7707876	7707876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020546.2	+1	reviewed	p.E442D	0.991	236	0%	139	20.9%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
FASTKD3	79072	genome.wustl.edu	37	5	7867936	7867936	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024091.2	-1	validated	p.C87	0.093	165	0%	74	28.4%	6	83.3%	-	-	-	NULL
SEMA5A	9037	genome.wustl.edu	37	5	9054251	9054251	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003966.2	-1	reviewed	p.I879	1.000	53	0%	27	37%	1	0%	-	-	-	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SEMA5A	9037	genome.wustl.edu	37	5	9108355	9108355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003966.2	-1	reviewed	p.T657I	1.000	86	0%	49	24.5%	1	0%	possibly_damaging(0.908)	tolerated(0.05)	deleterious(0.707)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
CCT5	22948	genome.wustl.edu	37	5	10256128	10256128	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012073.3	+1	reviewed	p.I131	1.000	87	0%	54	14.8%	304	26.9%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
MARCH6	10299	genome.wustl.edu	37	5	10402205	10402205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005885.2	+1	provisional	p.T336I	1.000	231	0%	158	11.4%	42	28.5%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13753638	13753638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A3526S	1.000	497	0%	357	24.6%	0	-	benign(0.109)	tolerated(0.24)	neutral(0.046)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13794111	13794111	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.A2648	0.991	233	0%	183	26.2%	0	-	-	-	-	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13841898	13841898	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.S1796Y	1.000	353	0%	220	14.1%	0	-	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	HMMPfam_DHC_N2
TRIO	7204	genome.wustl.edu	37	5	14316823	14316823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.L568M	1.000	41	0%	23	26.1%	6	33.3%	unknown(0)	tolerated(0.12)	-	HMMPfam_Spectrin,superfamily_Spectrin repeat
TRIO	7204	genome.wustl.edu	37	5	14366971	14366971	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.V919	1.000	150	0%	75	17.3%	13	7.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
ENSG00000249556	0	genome.wustl.edu	37	5	14652135	14652135	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515374	+1	novel	NULL	1.000	191	0.5%	99	34.3%	22	0%	-	-	-	-
ENSG00000249556	0	genome.wustl.edu	37	5	14652210	14652210	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515374	+1	novel	NULL	1.000	138	0%	66	33.3%	24	0%	-	-	-	-
MARCH11	441061	genome.wustl.edu	37	5	16067881	16067881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102562.1	-1	provisional	p.A303D	1.000	178	0%	113	17.7%	0	-	probably_damaging(0.957)	deleterious(0.05)	deleterious(0.746)	NULL
FAM134B	54463	genome.wustl.edu	37	5	16483542	16483542	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034850.1	-1	reviewed	p.R166	0.428	239	0%	161	28%	0	-	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16675128	16675128	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.R1600*	0.961	142	0%	66	30.3%	41	4.8%	-	-	-	HMMPfam_MyTH4,HMMSmart_MyTH4
MYO10	4651	genome.wustl.edu	37	5	16701803	16701803	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.Q901*	1.000	103	0%	54	13%	6	0%	-	-	-	NULL
MYO10	4651	genome.wustl.edu	37	5	16755015	16755015	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.D617	1.000	65	0%	32	15.6%	2	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
PRDM9	56979	genome.wustl.edu	37	5	23510084	23510084	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.L83	0.000	192	0%	116	34.5%	0	-	-	-	-	HMMSmart_KRAB
PRDM9	56979	genome.wustl.edu	37	5	23527087	23527087	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020227.2	+1	provisional	p.H630	1.000	455	0.2%	272	18.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDH10	1008	genome.wustl.edu	37	5	24491900	24491900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006727.2	-1	reviewed	p.F554S	1.000	81	0%	70	31.4%	0	-	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH9	1007	genome.wustl.edu	37	5	26881281	26881281	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.A778	0.567	482	0.2%	415	30.4%	0	-	-	-	-	HMMPfam_Cadherin_C
LOC100130803	100130803	genome.wustl.edu	37	5	29600850	29600850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722411.1	+1	model	p.T46I	0.998	33	0%	13	30.8%	0	-	-	-	-	superfamily_Ubiquitin-like
PDZD2	23037	genome.wustl.edu	37	5	31799522	31799522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.T56M	0.000	176	0%	104	20.2%	0	-	possibly_damaging(0.593)	deleterious(0)	deleterious(0.649)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32061148	32061148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.R787C	0.953	143	0%	73	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PDZD2	23037	genome.wustl.edu	37	5	32074101	32074101	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.G963	0.991	183	0%	104	26.9%	0	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32077650	32077650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.A1207D	0.001	264	0%	136	19.9%	0	-	possibly_damaging(0.736)	deleterious(0.02)	deleterious(0.652)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32088657	32088657	+	Silent	SNP	C	C	T	rs183567611	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.S1701	0.000	213	0%	118	20.3%	0	-	-	-	-	NULL
PDZD2	23037	genome.wustl.edu	37	5	32090587	32090587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.L2345M	1.000	125	0%	60	30%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GOLPH3	64083	genome.wustl.edu	37	5	32143878	32143878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022130.3	-1	reviewed	p.R112C	1.000	183	0%	126	29.4%	76	48.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GPP34
ZFR	51663	genome.wustl.edu	37	5	32355883	32355883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016107.3	-1	validated	p.D1070Y	1.000	338	0%	196	31.6%	20	45%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TARS	6897	genome.wustl.edu	37	5	33461807	33461807	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152295.3	+1	reviewed	p.K529	1.000	199	0%	146	16.4%	188	27.1%	-	-	-	superfamily_Class II aaRS and biotin synthetases
ADAMTS12	81792	genome.wustl.edu	37	5	33546291	33546291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.G1440E	1.000	219	0%	131	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RXFP3	51289	genome.wustl.edu	37	5	33936967	33936967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016568.3	+1	validated	p.A41V	0.974	33	0%	14	57.1%	0	-	benign(0.017)	deleterious(0.01)	neutral(0.406)	NULL
SLC45A2	51151	genome.wustl.edu	37	5	33982455	33982455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016180.3	-1	reviewed	p.V150I	1.000	318	0%	164	24.4%	0	-	benign(0.395)	tolerated(0.07)	neutral(0.446)	superfamily_MFS general substrate transporter
BRIX1	55299	genome.wustl.edu	37	5	34925448	34925448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018321.3	+1	validated	p.A304T	1.000	204	0%	110	19.1%	66	46.9%	benign(0.282)	tolerated(0.41)	neutral(0.101)	NULL
DNAJC21	134218	genome.wustl.edu	37	5	34933928	34933928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194283.3	+1	validated	p.L36M	1.000	81	0%	38	34.2%	21	47.6%	possibly_damaging(0.808)	tolerated(0.2)	neutral(0.353)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
AGXT2	64902	genome.wustl.edu	37	5	35047958	35047958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031900.3	-1	reviewed	p.L14M	0.031	135	0%	91	24.2%	0	-	possibly_damaging(0.688)	deleterious(0.05)	deleterious(0.591)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35776364	35776364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.A1362T	0.397	343	0%	242	31%	5	80%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35807304	35807304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.K1776N	1.000	660	0.2%	345	23.5%	1	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_hATC
CAPSL	133690	genome.wustl.edu	37	5	35904661	35904661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042625.1	-1	validated	p.A205T	0.996	167	0%	129	35.7%	1	100%	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
LMBRD2	92255	genome.wustl.edu	37	5	36104192	36104192	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007527.1	-1	validated	p.R682*	1.000	161	0%	104	26%	1	0%	-	-	-	NULL
SKP2	6502	genome.wustl.edu	37	5	36166689	36166689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005983.2	+1	reviewed	p.R154Q	0.236	233	0%	204	31.4%	40	45%	benign(0.361)	tolerated(0.58)	neutral(0.120)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37138901	37138901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.I1749V	1.000	513	0%	359	29.2%	8	50%	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37157771	37157771	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	e22+1	1.000	111	0%	84	34.5%	0	-	-	-	-	-
C5orf42	65250	genome.wustl.edu	37	5	37173924	37173924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.A915D	0.001	264	0%	165	26.7%	3	66.6%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
C5orf42	65250	genome.wustl.edu	37	5	37183564	37183564	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.D454	0.812	141	0%	86	31.4%	4	100%	-	-	-	NULL
NUP155	9631	genome.wustl.edu	37	5	37305251	37305251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153485.1	-1	reviewed	p.A989T	1.000	212	0%	133	32.3%	40	42.5%	probably_damaging(0.983)	tolerated(0.39)	neutral(0.445)	HMMPfam_Nucleoporin
EGFLAM	133584	genome.wustl.edu	37	5	38458480	38458480	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152403.2	+1	validated	p.R919*	1.000	89	0%	60	36.7%	3	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
EGFLAM	133584	genome.wustl.edu	37	5	38463085	38463085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152403.2	+1	validated	p.Q949H	0.983	63	0%	56	28.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
LIFR	3977	genome.wustl.edu	37	5	38489252	38489252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.F755V	1.000	174	0%	91	22%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38502810	38502810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.R510H	1.000	104	0%	97	32%	5	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LIFR	3977	genome.wustl.edu	37	5	38504161	38504161	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.S452fs	0.943	-	-	-	-	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RICTOR	253260	genome.wustl.edu	37	5	38947369	38947369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.F1437L	1.000	314	0%	215	30.2%	6	16.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM repeat
RICTOR	253260	genome.wustl.edu	37	5	38963085	38963085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.P487T	1.000	174	0%	157	15.9%	4	50%	possibly_damaging(0.819)	tolerated(0.09)	deleterious(0.606)	superfamily_ARM repeat
DAB2	1601	genome.wustl.edu	37	5	39377340	39377340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.A517S	0.000	209	0%	160	27.5%	8	0%	benign(0.001)	tolerated(0.21)	neutral(0.044)	PatternScan_PFKB_KINASES_1
CARD6	84674	genome.wustl.edu	37	5	40853164	40853164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.E577G	0.026	716	0.1%	420	30.7%	2	0%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	NULL
CARD6	84674	genome.wustl.edu	37	5	40853520	40853520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.S696R	0.000	656	0%	405	28.6%	3	0%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
C7	730	genome.wustl.edu	37	5	40959659	40959659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.R533I	0.004	58	0%	46	30.4%	0	-	benign(0.081)	tolerated(0.08)	neutral(0.306)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
C7	730	genome.wustl.edu	37	5	40972516	40972516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000587.2	+1	reviewed	p.V632I	0.996	374	0%	217	30.9%	1	0%	benign(0.117)	tolerated(0.44)	neutral(0.022)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
HEATR7B2	133558	genome.wustl.edu	37	5	41054935	41054935	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.R347	0.003	252	0%	115	30.4%	0	-	-	-	-	superfamily_ARM repeat
C6	729	genome.wustl.edu	37	5	41149518	41149518	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000065.2	-1	reviewed	p.C816	0.261	722	0%	530	25.3%	0	-	-	-	-	HMMSmart_KAZAL,HMMSmart_FIMAC,HMMPfam_Kazal_2
C5orf51	285636	genome.wustl.edu	37	5	41911209	41911209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175921.4	+1	validated	p.L138	0.983	161	0%	84	23.8%	14	28.5%	-	-	-	NULL
HMGCS1	3157	genome.wustl.edu	37	5	43298779	43298779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098272.1	-1	validated	p.I97V	1.000	338	0%	224	25.9%	70	35.7%	benign(0.002)	tolerated(0.48)	neutral(0.011)	HMMPfam_HMG_CoA_synt_N,superfamily_Thiolase-like
NNT	23530	genome.wustl.edu	37	5	43700331	43700331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012343.3	+1	reviewed	p.D996A	1.000	220	0%	139	32.4%	60	31.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PNTB,superfamily_SSF52467
HCN1	348980	genome.wustl.edu	37	5	45262821	45262821	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.I625	0.945	159	0%	103	18.4%	0	-	-	-	-	NULL
HCN1	348980	genome.wustl.edu	37	5	45396641	45396641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021072.2	-1	validated	p.A395T	1.000	119	0%	87	26.4%	0	-	benign(0.078)	tolerated(0.42)	neutral(0.019)	superfamily_SSF81324
PARP8	79668	genome.wustl.edu	37	5	50123838	50123838	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024615.3	+1	validated	p.E680*	1.000	276	0%	166	14.5%	15	0%	-	-	-	superfamily_ADP-ribosylation
ITGA1	3672	genome.wustl.edu	37	5	52243179	52243179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.A1128D	1.000	187	0%	90	31.1%	6	0%	possibly_damaging(0.538)	tolerated(0.26)	neutral(0.216)	superfamily_SSF69179
ITGA2	3673	genome.wustl.edu	37	5	52344497	52344497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.V176A	1.000	825	0%	817	26.4%	3	0%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
ITGA2	3673	genome.wustl.edu	37	5	52344601	52344601	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	e6+1	1.000	524	0%	423	21.5%	0	-	-	-	-	-
ITGA2	3673	genome.wustl.edu	37	5	52358720	52358720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.K521N	1.000	211	0%	188	35.6%	1	100%	probably_damaging(1)	tolerated(0.52)	deleterious(0.508)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGA2	3673	genome.wustl.edu	37	5	52370272	52370272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.D877N	0.002	133	0%	92	28.3%	6	33.3%	benign(0.001)	tolerated(1)	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
ITGA2	3673	genome.wustl.edu	37	5	52379187	52379187	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002203.3	+1	reviewed	p.S1054	0.088	102	0%	97	34%	3	0%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
NDUFS4	4724	genome.wustl.edu	37	5	52942095	52942095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002495.2	+1	reviewed	p.E70D	1.000	100	0%	62	21%	94	23.4%	unknown(0)	-	-	NULL
ESM1	11082	genome.wustl.edu	37	5	54277948	54277948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007036.4	-1	reviewed	p.D110Y	1.000	160	0%	71	33.8%	4	0%	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
CDC20B	166979	genome.wustl.edu	37	5	54423137	54423137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152623.2	-1	validated	p.G313S	1.000	452	0%	286	26.9%	18	38.8%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_WD40,superfamily_WD40_like
GPX8	493869	genome.wustl.edu	37	5	54456219	54456219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008397.2	+1	validated	p.G67C	1.000	140	0%	61	37.7%	27	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GSHPx,superfamily_Thioredoxin-like
SKIV2L2	23517	genome.wustl.edu	37	5	54603976	54603976	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	e1+1	1.000	144	0%	101	28.7%	0	-	-	-	-	-
SKIV2L2	23517	genome.wustl.edu	37	5	54649009	54649009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015360.4	+1	validated	p.T482M	1.000	209	0%	135	25.2%	27	7.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
SLC38A9	153129	genome.wustl.edu	37	5	54941657	54941657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173514.2	-1	validated	p.I376T	1.000	144	0%	114	29.8%	5	80%	possibly_damaging(0.675)	deleterious(0.01)	deleterious(0.645)	NULL
DDX4	54514	genome.wustl.edu	37	5	55111154	55111154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.V667A	1.000	302	0.3%	165	26.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX4	54514	genome.wustl.edu	37	5	55112333	55112333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024415.2	+1	validated	p.A714T	0.960	90	0%	55	25.5%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
IL6ST	3572	genome.wustl.edu	37	5	55247296	55247296	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002184.2	-1	reviewed	p.K612	1.000	331	0%	245	25.7%	33	42.4%	-	-	-	superfamily_Fibronectin type III
MAP3K1	4214	genome.wustl.edu	37	5	56171084	56171084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005921.1	+1	validated	p.V638I	1.000	242	0%	160	25.6%	13	46.1%	benign(0.296)	tolerated(0.17)	neutral(0.150)	NULL
PLK2	10769	genome.wustl.edu	37	5	57751418	57751418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006622.2	-1	validated	p.V525I	0.997	82	0%	47	42.6%	62	37%	benign(0.115)	tolerated(0.14)	neutral(0.259)	HMMPfam_POLO_box,superfamily_SSF82615
GAPT	202309	genome.wustl.edu	37	5	57790711	57790711	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152687.2	+1	provisional	p.G116	0.004	436	0%	292	28.1%	2	0%	-	-	-	NULL
ERCC8	1161	genome.wustl.edu	37	5	60186764	60186764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000082.3	-1	reviewed	p.K331N	1.000	152	0%	83	15.7%	7	14.2%	benign(0.004)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RNF180	285671	genome.wustl.edu	37	5	63507898	63507898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113561.1	+1	validated	p.D48N	0.007	241	0%	152	27%	0	-	benign(0)	tolerated(1)	-	NULL
RNF180	285671	genome.wustl.edu	37	5	63509984	63509984	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113561.1	+1	validated	p.S277	0.942	394	0.3%	279	26.5%	1	100%	-	-	-	NULL
CWC27	10283	genome.wustl.edu	37	5	64272995	64272995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005869.2	+1	validated	p.L396I	1.000	305	0%	199	25.6%	42	33.3%	possibly_damaging(0.829)	deleterious(0.01)	deleterious(0.720)	NULL
MAST4	375449	genome.wustl.edu	37	5	66462738	66462738	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443808	+1	known	p.R1634C	0.000	27	0%	16	43.8%	4	100%	-	-	-	NULL
SLC30A5	64924	genome.wustl.edu	37	5	68417562	68417562	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022902.2	+1	provisional	p.I537	1.000	70	0%	47	21.3%	130	43.8%	-	-	-	HMMPfam_Cation_efflux
CDK7	1022	genome.wustl.edu	37	5	68572953	68572953	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001799.3	+1	validated	p.L344	0.985	259	0%	202	38.6%	115	42.6%	-	-	-	NULL
RAD17	5884	genome.wustl.edu	37	5	68687705	68687705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133339.1	+1	reviewed	p.D363N	0.997	362	0%	268	26.5%	20	50%	benign(0.123)	tolerated(0.64)	neutral(0.013)	HMMPfam_Rad17
RAD17	5884	genome.wustl.edu	37	5	68695962	68695962	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133339.1	+1	reviewed	p.Y564*	1.000	156	0%	89	30.3%	40	32.5%	-	-	-	HMMPfam_Rad17
OCLN	100506658	genome.wustl.edu	37	5	68805534	68805534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002538.2	+1	reviewed	p.S206Y	1.000	289	0.3%	168	13.7%	27	25.9%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_MARVEL
GTF2H2D	730394	genome.wustl.edu	37	5	68875589	68875589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042490.3	+1	provisional	p.Y219H	1.000	473	0.4%	335	29%	45	42.2%	benign(0.045)	tolerated(0.08)	neutral(0.302)	HMMSmart_SM00327,HMMPfam_Ssl1,superfamily_vWA-like
BDP1	55814	genome.wustl.edu	37	5	70800558	70800558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.K784N	0.000	206	0%	114	31.6%	4	0%	benign(0.132)	deleterious(0.01)	neutral(0.417)	NULL
MRPS27	23107	genome.wustl.edu	37	5	71516976	71516976	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015084.2	-1	reviewed	e11-1	0.892	499	0.6%	354	27.4%	4	100%	-	-	-	-
PTCD2	79810	genome.wustl.edu	37	5	71627137	71627137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024754.3	+1	validated	p.L135I	0.258	369	0%	234	29.5%	11	36.3%	benign(0.216)	tolerated(0.08)	neutral(0.321)	NULL
TNPO1	3842	genome.wustl.edu	37	5	72151605	72151605	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002270.3	+1	reviewed	p.E70	1.000	67	0%	40	22.5%	36	36.1%	-	-	-	HMMPfam_IBN_N,superfamily_ARM repeat
TMEM171	134285	genome.wustl.edu	37	5	72419492	72419492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173490.6	+1	validated	p.D98N	0.835	87	0%	40	22.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENC1	8507	genome.wustl.edu	37	5	73931821	73931821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003633.2	-1	validated	p.L164M	1.000	257	0%	124	27.4%	34	52.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_BACK
GFM2	84340	genome.wustl.edu	37	5	74034435	74034435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032380.3	-1	reviewed	p.A371V	1.000	428	0%	303	24.4%	59	38.9%	possibly_damaging(0.585)	tolerated(0.32)	neutral(0.226)	superfamily_Translation proteins
HMGCR	3156	genome.wustl.edu	37	5	74650897	74650897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000859.2	+1	reviewed	p.C527Y	1.000	173	0.6%	123	28.5%	50	44%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG-CoA_red,superfamily_Substrate-binding domain of HMG-CoA reductase
COL4A3BP	10087	genome.wustl.edu	37	5	74675210	74675210	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508809	-1	known	p.R114C	0.961	102	0%	64	35.9%	41	46.3%	-	-	-	HMMPfam_START,superfamily_Bet v1-like
COL4A3BP	10087	genome.wustl.edu	37	5	74681816	74681816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130105.1	-1	reviewed	p.P571H	1.000	74	0%	52	23.1%	23	69.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_START,HMMSmart_START,superfamily_SSF55961
SV2C	22987	genome.wustl.edu	37	5	75427752	75427752	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.Y59	0.995	244	0%	174	29.3%	0	-	-	-	-	superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75886280	75886280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	p.A230S	0.959	534	0%	362	25.4%	7	57.1%	benign(0.378)	tolerated(0.6)	neutral(0.125)	NULL
ARSB	411	genome.wustl.edu	37	5	78260273	78260273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000046.3	-1	reviewed	p.A219D	1.000	151	0%	79	25.3%	5	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ENSG00000214890	0	genome.wustl.edu	37	5	78296741	78296741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399189	-1	known	p.P38H	0.011	137	0%	79	40.5%	0	-	-	-	-	NULL
PAPD4	167153	genome.wustl.edu	37	5	78981049	78981049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114393.1	+1	validated	p.D470Y	1.000	159	0%	90	26.7%	41	43.9%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_PAP/OAS1 substrate-binding domain
MTX3	345778	genome.wustl.edu	37	5	79282820	79282820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010891.4	-1	validated	p.R231H	0.734	174	0%	100	27%	7	28.5%	benign(0.036)	tolerated(0.17)	neutral(0.061)	superfamily_Glutathione S-transferase (GST) C-terminal domain
ZFYVE16	9765	genome.wustl.edu	37	5	79734181	79734181	+	Silent	SNP	G	G	A	rs183972431	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105251.1	+1	validated	p.S559	0.000	204	0%	144	16%	3	33.3%	-	-	-	NULL
ATG10	83734	genome.wustl.edu	37	5	81549236	81549236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131028.1	+1	validated	p.V219I	0.000	189	0%	114	36.8%	12	50%	benign(0.074)	deleterious(0)	neutral(0.450)	NULL
XRCC4	7518	genome.wustl.edu	37	5	82499528	82499528	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022406.2	+1	reviewed	e4+2	1.000	155	0%	110	30%	0	-	-	-	-	-
VCAN	1462	genome.wustl.edu	37	5	82786179	82786179	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.G111	0.010	238	0%	151	27.2%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
VCAN	1462	genome.wustl.edu	37	5	82789719	82789719	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.Y239	0.397	188	0%	140	37.1%	2	0%	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,superfamily_C-type lectin-like
VCAN	1462	genome.wustl.edu	37	5	82808067	82808067	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.W298*	1.000	62	0%	25	40%	2	0%	-	-	-	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
VCAN	1462	genome.wustl.edu	37	5	82833950	82833950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.D1710Y	0.001	331	0%	248	25.4%	2	0%	probably_damaging(0.97)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82835517	82835517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.S2232N	0.000	362	0.3%	277	30%	1	0%	benign(0.397)	-	-	NULL
EDIL3	10085	genome.wustl.edu	37	5	83360549	83360549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005711.3	-1	reviewed	p.R308*	0.999	221	0%	129	25.6%	4	0%	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
EDIL3	10085	genome.wustl.edu	37	5	83362385	83362385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005711.3	-1	reviewed	p.T231I	1.000	247	0%	164	29.9%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,superfamily_Galactose-binding domain-like
COX7C	1350	genome.wustl.edu	37	5	85915192	85915192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001867.2	+1	reviewed	p.N33S	1.000	197	0.5%	129	23.3%	777	41.9%	possibly_damaging(0.728)	deleterious(0)	deleterious(0.710)	HMMPfam_COX7C,superfamily_Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
RASA1	5921	genome.wustl.edu	37	5	86679582	86679582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.F915L	1.000	170	0%	123	30.1%	20	25%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
RASA1	5921	genome.wustl.edu	37	5	86682692	86682692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.R966H	1.000	214	0%	155	28.4%	27	48.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CCNH	902	genome.wustl.edu	37	5	86700721	86700721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001239.2	-1	reviewed	p.S210F	1.000	246	0%	169	29%	18	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cyclin_like
CCNH	902	genome.wustl.edu	37	5	86700748	86700748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001239.2	-1	reviewed	p.T201M	1.000	282	0%	176	30.1%	23	56.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cyclin_like
TMEM161B	153396	genome.wustl.edu	37	5	87494938	87494938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153354.3	-1	provisional	p.R315Q	1.000	53	0%	48	39.6%	20	30%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Tmemb_161AB
MEF2C	4208	genome.wustl.edu	37	5	88057075	88057075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002397.3	-1	validated	p.S110I	1.000	308	0%	208	35.1%	2	0%	benign(0.074)	deleterious(0)	neutral(0.450)	NULL
LYSMD3	116068	genome.wustl.edu	37	5	89821085	89821085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198273.1	-1	validated	p.R8C	0.713	108	0%	62	38.7%	9	66.6%	benign(0.155)	tolerated(0.13)	neutral(0.266)	NULL
GPR98	84059	genome.wustl.edu	37	5	89923545	89923545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.S397I	1.000	211	0%	157	33.1%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
GPR98	84059	genome.wustl.edu	37	5	89949306	89949306	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504142	+1	known	p.W894R	0.613	132	0%	74	21.6%	1	0%	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	89977258	89977258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.T1884I	1.000	123	0%	76	35.5%	0	-	possibly_damaging(0.76)	tolerated(0.13)	deleterious(0.534)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89979786	89979786	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.A2016	1.000	153	0%	108	13.9%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90101157	90101157	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.H4906	0.002	168	0%	100	32%	2	100%	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	90106221	90106221	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.S5048	0.998	114	0%	73	15.1%	2	50%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
ARRDC3	57561	genome.wustl.edu	37	5	90669614	90669614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.R359W	1.000	285	0.4%	172	23.8%	45	57.7%	possibly_damaging(0.862)	deleterious(0.02)	deleterious(0.716)	NULL
ARRDC3	57561	genome.wustl.edu	37	5	90670759	90670759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.R284C	1.000	198	0%	103	22.3%	37	35.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Arrestin_C,superfamily_Ig_E-set
FAM172A	83989	genome.wustl.edu	37	5	93388892	93388892	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032042.5	-1	validated	p.K49N	1.000	145	0%	125	28.8%	4	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
KIAA0825	285600	genome.wustl.edu	37	5	93856413	93856413	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145678.1	-1	validated	p.R170	0.998	109	0%	75	36%	2	100%	-	-	-	NULL
ANKRD32	84250	genome.wustl.edu	37	5	94024292	94024292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032290.3	+1	validated	p.R735W	0.969	233	0%	156	35.9%	7	14.2%	benign(0.032)	tolerated(0.08)	neutral(0.301)	NULL
MCTP1	79772	genome.wustl.edu	37	5	94259728	94259728	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024717.4	-1	validated	e7-2	1.000	153	0%	86	22.1%	0	-	-	-	-	-
TTC37	9652	genome.wustl.edu	37	5	94872824	94872824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.A189T	1.000	182	0%	120	28.3%	6	16.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_SSF48452
SPATA9	83890	genome.wustl.edu	37	5	94999693	94999693	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031952.3	-1	validated	p.S146	1.000	100	0%	58	13.8%	1	0%	-	-	-	NULL
GLRX	2745	genome.wustl.edu	37	5	95152294	95152294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118890.1	-1	validated	p.G82R	0.989	296	0%	183	15.8%	13	23%	possibly_damaging(0.774)	deleterious(0)	deleterious(0.733)	superfamily_Thioredoxin-like
GLRX	2745	genome.wustl.edu	37	5	95158271	95158271	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118890.1	-1	validated	p.I32	0.912	175	0%	95	31.6%	7	28.5%	-	-	-	HMMPfam_Glutaredoxin,PatternScan_GLUTAREDOXIN_1,superfamily_Thioredoxin-like
PCSK1	5122	genome.wustl.edu	37	5	95735750	95735750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000439.4	-1	reviewed	p.A446V	1.000	215	0%	87	27.6%	0	-	probably_damaging(0.967)	deleterious(0.02)	deleterious(0.792)	superfamily_Pept_S8_S53
PCSK1	5122	genome.wustl.edu	37	5	95746544	95746544	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000439.4	-1	reviewed	p.Y343	0.218	410	0%	240	33.3%	1	0%	-	-	-	HMMPfam_Peptidase_S8,superfamily_Pept_S8_S53
CAST	831	genome.wustl.edu	37	5	96077014	96077014	+	Silent	SNP	C	C	T	rs191204602	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512620	+1	known	p.T255I	0.998	173	0%	114	13.2%	52	21.1%	-	-	-	HMMPfam_Calpain_inhib
RIOK2	55781	genome.wustl.edu	37	5	96503656	96503656	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018343.2	-1	validated	p.G304	0.993	271	0%	183	24%	37	35.1%	-	-	-	NULL
CHD1	1105	genome.wustl.edu	37	5	98205465	98205465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.D1367G	1.000	126	0%	73	28.8%	14	64.2%	possibly_damaging(0.85)	tolerated(0.4)	neutral(0.343)	NULL
CHD1	1105	genome.wustl.edu	37	5	98236642	98236642	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.E244	1.000	231	0%	164	27.4%	7	71.4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLCO6A1	133482	genome.wustl.edu	37	5	101755694	101755694	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173488.3	-1	validated	p.G436	0.800	181	0%	167	27.5%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
PAM	5066	genome.wustl.edu	37	5	102203060	102203060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000919.3	+1	reviewed	p.A58V	0.994	186	0%	103	31.1%	167	43.1%	unknown(0)	tolerated(0.09)	-	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F
PPIP5K2	23262	genome.wustl.edu	37	5	102494919	102494919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.G603S	1.000	583	0%	491	13.2%	15	26.6%	benign(0.108)	deleterious(0.01)	neutral(0.414)	HMMPfam_Acid_phosphat_A,superfamily_SSF53254
FBXL17	64839	genome.wustl.edu	37	5	107197454	107197454	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359660	-1	known	p.G293	1.000	59	0%	41	14.6%	19	36.8%	-	-	-	NULL
FER	2241	genome.wustl.edu	37	5	108233491	108233491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005246.2	+1	reviewed	p.G393E	1.000	252	0%	142	27.5%	1	100%	possibly_damaging(0.49)	tolerated(0.1)	neutral(0.450)	NULL
LOC100287867	100287867	genome.wustl.edu	37	5	108784164	108784164	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342547.1	-1	model	p.I19	0.754	112	0%	55	23.6%	0	-	-	-	-	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109049264	109049264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.R60H	1.000	423	0%	301	26.2%	4	50%	benign(0.026)	tolerated(0.19)	neutral(0.051)	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109106077	109106077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.I344S	1.000	315	0%	247	17.4%	11	9%	possibly_damaging(0.798)	deleterious(0)	deleterious(0.745)	HMMPfam_Glyco_hydro_38,superfamily_Glyco_hydro/deAcase_b/a-brl
SLC25A46	91137	genome.wustl.edu	37	5	110097061	110097061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138773.1	+1	provisional	p.S279I	1.000	654	0%	535	26%	25	56%	benign(0.167)	deleterious(0.03)	neutral(0.380)	superfamily_Mitochondrial carrier
WDR36	134430	genome.wustl.edu	37	5	110456794	110456794	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139281.2	+1	reviewed	p.L757	0.971	348	0%	260	23.1%	25	32%	-	-	-	HMMPfam_Utp21
NREP	9315	genome.wustl.edu	37	5	111066713	111066713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142475.1	-1	validated	p.R82C	1.000	227	0%	149	30.9%	48	18.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
EPB41L4A	64097	genome.wustl.edu	37	5	111541127	111541127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022140.3	-1	validated	p.G418D	0.520	1327	0%	909	13.5%	5	20%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
APC	324	genome.wustl.edu	37	5	112090597	112090597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.A4T	1.000	206	0%	138	27.5%	0	-	possibly_damaging(0.607)	deleterious(0)	deleterious(0.655)	NULL
APC	324	genome.wustl.edu	37	5	112116596	112116596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.A214V	1.000	87	0%	63	30.2%	2	0%	benign(0.016)	tolerated(0.13)	neutral(0.253)	superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112128191	112128191	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R232*	1.000	228	0.4%	134	27.6%	2	50%	-	-	-	superfamily_ARM repeat
APC	324	genome.wustl.edu	37	5	112173647	112173647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R786C	1.000	352	0.3%	229	24%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
APC	324	genome.wustl.edu	37	5	112177096	112177096	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.Q1935	0.997	494	0%	323	26.6%	5	100%	-	-	-	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112227938	112227938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.S201F	0.987	428	0%	283	27.2%	0	-	probably_damaging(0.983)	tolerated(0.11)	deleterious(0.701)	NULL
ZRSR1	7310	genome.wustl.edu	37	5	112227947	112227947	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.L205fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54928
ZRSR1	7310	genome.wustl.edu	37	5	112228056	112228056	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.Q240	1.000	382	0%	225	13.8%	5	0%	-	-	-	HMMSmart_RRM,superfamily_SSF54928
ZRSR1	7310	genome.wustl.edu	37	5	112228483	112228483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391338	+1	known	p.R383W	0.001	177	0%	131	26.7%	9	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113740188	113740188	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021614.2	+1	reviewed	p.E212	1.000	736	0%	540	23.7%	7	28.5%	-	-	-	HMMPfam_SK_channel
KCNN2	3781	genome.wustl.edu	37	5	113831612	113831612	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021614.2	+1	reviewed	p.D491	1.000	361	0%	210	33.8%	10	40%	-	-	-	NULL
KCNN2	3781	genome.wustl.edu	37	5	113831630	113831630	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021614.2	+1	reviewed	p.N497	0.884	369	0.3%	226	10.6%	11	18.1%	-	-	-	NULL
CCDC112	153733	genome.wustl.edu	37	5	114607034	114607034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040440.2	-1	validated	p.S403I	0.003	574	0%	329	31.3%	14	57.1%	benign(0.079)	tolerated(0.13)	neutral(0.258)	NULL
FEM1C	56929	genome.wustl.edu	37	5	114861119	114861119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020177.2	-1	validated	p.A247D	1.000	369	0%	303	10.6%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
AQPEP	206338	genome.wustl.edu	37	5	115298511	115298511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.P66L	0.000	51	0%	32	18.8%	0	-	benign(0.003)	tolerated(0.22)	neutral(0.042)	NULL
AQPEP	206338	genome.wustl.edu	37	5	115298704	115298704	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.R130	0.996	111	0%	51	27.5%	0	-	-	-	-	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
AQPEP	206338	genome.wustl.edu	37	5	115298805	115298805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.P164L	0.000	42	0%	30	23.3%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
AQPEP	206338	genome.wustl.edu	37	5	115320356	115320356	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.F310I	0.933	225	0%	159	27.7%	0	-	benign(0.136)	deleterious(0.01)	neutral(0.417)	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
DMXL1	1657	genome.wustl.edu	37	5	118484659	118484659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.P1046H	1.000	550	0.2%	355	25.9%	4	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
DMXL1	1657	genome.wustl.edu	37	5	118485683	118485683	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.Q1387	1.000	246	0%	170	23.5%	4	25%	-	-	-	NULL
HSD17B4	3295	genome.wustl.edu	37	5	118867063	118867063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000414.2	+1	reviewed	p.H653Y	1.000	187	0%	122	26.2%	101	18.8%	possibly_damaging(0.502)	deleterious(0.04)	deleterious(0.516)	HMMPfam_SCP2,superfamily_SCP2
SRFBP1	153443	genome.wustl.edu	37	5	121355908	121355908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152546.2	+1	validated	p.R160C	0.003	286	0%	212	28.3%	13	61.5%	possibly_damaging(0.494)	deleterious(0.04)	deleterious(0.513)	NULL
ZNF474	133923	genome.wustl.edu	37	5	121488147	121488147	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207317.1	+1	provisional	p.N154	0.654	244	0%	119	14.3%	5	20%	-	-	-	NULL
SNCAIP	9627	genome.wustl.edu	37	5	121780326	121780326	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005460.2	+1	reviewed	p.A497	0.016	234	0%	137	29.2%	3	0%	-	-	-	superfamily_ANK
SNX2	6643	genome.wustl.edu	37	5	122165293	122165293	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003100.2	+1	reviewed	p.L504	1.000	184	0.5%	111	25.2%	146	39%	-	-	-	HMMPfam_Vps5
CEP120	153241	genome.wustl.edu	37	5	122722327	122722327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153223.3	-1	reviewed	p.I489V	1.000	157	0%	111	36.9%	12	58.3%	benign(0.093)	tolerated(0.22)	neutral(0.049)	NULL
CEP120	153241	genome.wustl.edu	37	5	122734898	122734898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153223.3	-1	reviewed	p.P182S	1.000	179	0%	119	31.9%	5	100%	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123982665	123982665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.L1138M	1.000	277	0%	170	19.4%	1	0%	benign(0.293)	tolerated(0.17)	neutral(0.149)	NULL
ZNF608	57507	genome.wustl.edu	37	5	123983267	123983267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.P937L	1.000	248	0%	118	12.7%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MEGF10	84466	genome.wustl.edu	37	5	126746129	126746129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032446.2	+1	validated	p.E322D	0.997	64	0%	30	36.7%	0	-	benign(0.151)	tolerated(0.35)	neutral(0.034)	HMMSmart_SM00181,superfamily_EGF/Laminin
PRRC1	133619	genome.wustl.edu	37	5	126860276	126860276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130809.3	+1	validated	p.P53S	0.631	640	0.2%	388	24.5%	48	29.1%	possibly_damaging(0.485)	tolerated(0.14)	neutral(0.410)	NULL
CTXN3	613212	genome.wustl.edu	37	5	126993391	126993391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048252.2	+1	validated	p.P60S	1.000	241	0%	151	20.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127485785	127485785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.S701Y	1.000	166	0%	133	22.6%	17	41.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AA_permease
SLC12A2	6558	genome.wustl.edu	37	5	127486939	127486939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.R705H	1.000	294	0%	188	25.5%	18	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
SLC12A2	6558	genome.wustl.edu	37	5	127497480	127497480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.Q868H	1.000	106	0%	79	30.4%	21	38%	benign(0.12)	tolerated(0.13)	neutral(0.262)	NULL
FBN2	2201	genome.wustl.edu	37	5	127614480	127614480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.A2398T	1.000	178	0%	110	25.5%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127644942	127644942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.T1784A	1.000	128	0%	69	27.5%	0	-	benign(0.419)	deleterious(0.01)	deleterious(0.542)	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
FBN2	2201	genome.wustl.edu	37	5	127668661	127668661	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.G1389*	1.000	642	0.2%	431	27.6%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127685059	127685059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.G990V	1.000	192	0%	110	13.6%	0	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA
FBN2	2201	genome.wustl.edu	37	5	127686618	127686618	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.S918	0.014	177	0%	105	22.9%	2	0%	-	-	-	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
ISOC1	51015	genome.wustl.edu	37	5	128448554	128448554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016048.2	+1	validated	p.A253T	1.000	476	0.2%	286	16.4%	53	24.5%	benign(0.19)	tolerated(0.4)	neutral(0.034)	HMMPfam_Isochorismatase,superfamily_Iscrsm_hydrolase
ADAMTS19	171019	genome.wustl.edu	37	5	129037220	129037220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.A1026T	0.107	126	0%	68	27.9%	16	37.5%	benign(0.005)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
LYRM7	90624	genome.wustl.edu	37	5	130535229	130535229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507584	+1	known	p.W56*	1.000	91	0%	45	26.7%	12	58.3%	-	-	-	NULL
FNIP1	96459	genome.wustl.edu	37	5	131007613	131007613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133372.2	-1	validated	p.D842N	1.000	460	0.2%	264	17.8%	7	42.8%	possibly_damaging(0.602)	tolerated(0.89)	neutral(0.208)	NULL
P4HA2	8974	genome.wustl.edu	37	5	131531143	131531143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142599.1	-1	reviewed	p.V468I	1.000	130	0%	75	26.7%	45	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
KIF3A	11127	genome.wustl.edu	37	5	132051511	132051511	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007054.5	-1	validated	p.K356M	1.000	130	0%	92	31.5%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SEPT8	23176	genome.wustl.edu	37	5	132096635	132096635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098811.1	-1	validated	p.R382H	1.000	271	0%	128	28.1%	20	40%	possibly_damaging(0.579)	deleterious(0.04)	deleterious(0.548)	NULL
AFF4	27125	genome.wustl.edu	37	5	132219089	132219089	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014423.3	-1	validated	p.F1103V	1.000	87	0%	57	10.5%	8	25%	probably_damaging(0.978)	tolerated(1)	neutral(0.420)	HMMPfam_AF-4
AFF4	27125	genome.wustl.edu	37	5	132232071	132232071	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014423.3	-1	validated	p.E751*	1.000	279	0.4%	182	30.2%	5	40%	-	-	-	HMMPfam_AF-4
HSPA4	3308	genome.wustl.edu	37	5	132403232	132403232	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002154.3	+1	validated	p.G97*	1.000	339	0%	190	28.9%	64	0%	-	-	-	HMMPfam_HSP70,superfamily_SSF53067
PHF15	23338	genome.wustl.edu	37	5	133887825	133887825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015288.4	+1	provisional	p.D79E	1.000	158	0%	92	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPL1
SEC24A	10802	genome.wustl.edu	37	5	134041086	134041086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021982.1	+1	validated	p.G837E	1.000	239	0%	145	25.5%	34	29.4%	probably_damaging(0.988)	tolerated(0.07)	deleterious(0.756)	superfamily_beta-sandwich domain of Sec23/24
PITX1	5307	genome.wustl.edu	37	5	134364717	134364717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002653.4	-1	reviewed	p.A233T	1.000	65	0%	31	35.5%	4	50%	possibly_damaging(0.919)	tolerated(0.39)	neutral(0.386)	NULL
H2AFY	9555	genome.wustl.edu	37	5	134705221	134705221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.R118W	1.000	215	0.5%	110	29.1%	267	34.8%	benign(0.017)	deleterious(0)	neutral(0.445)	HMMSmart_SM00414,superfamily_Histone-fold
FBXL21	26223	genome.wustl.edu	37	5	135276176	135276176	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467490	+1	known	NULL	0.998	58	0%	55	32.7%	0	-	-	-	-	-
TGFBI	7045	genome.wustl.edu	37	5	135397231	135397231	+	Missense_Mutation	SNP	C	C	T	rs188333040	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000358.2	+1	reviewed	p.A650V	0.986	80	0%	48	29.2%	63	0%	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	NULL
SMAD5	4090	genome.wustl.edu	37	5	135508329	135508329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398807	+1	known	p.R328*	0.649	213	0%	178	29.8%	15	26.6%	-	-	-	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
KLHL3	26249	genome.wustl.edu	37	5	137013258	137013258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017415.2	-1	validated	p.K204N	1.000	296	0%	150	25.3%	0	-	benign(0.008)	tolerated(0.34)	neutral(0.023)	HMMPfam_BACK
MYOT	9499	genome.wustl.edu	37	5	137206516	137206516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006790.2	+1	reviewed	p.S59I	1.000	546	0%	380	15.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PKD2L2	27039	genome.wustl.edu	37	5	137228280	137228280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.R82H	0.101	165	0%	118	15.3%	0	-	probably_damaging(0.976)	deleterious(0.02)	deleterious(0.801)	HMMPfam_PKD_channel
BRD8	10902	genome.wustl.edu	37	5	137486559	137486559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139199.1	-1	reviewed	p.E999K	0.004	339	0%	181	32.6%	0	-	benign(0.016)	tolerated(0.06)	neutral(0.323)	NULL
CDC23	8697	genome.wustl.edu	37	5	137537104	137537104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004661.3	-1	reviewed	p.A150V	0.998	236	0%	146	28.1%	19	57.8%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_APC8,superfamily_TPR-like
GFRA3	2676	genome.wustl.edu	37	5	137600153	137600153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001496.3	-1	reviewed	p.A59D	0.492	124	0%	61	24.6%	1	100%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	HMMPfam_GDNF,superfamily_GDNF receptor-like (Pfam 02351)
KDM3B	51780	genome.wustl.edu	37	5	137727622	137727622	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.N767	0.719	548	0%	280	15.7%	29	20.6%	-	-	-	NULL
KDM3B	51780	genome.wustl.edu	37	5	137765589	137765589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.P1610T	1.000	98	0%	55	14.5%	43	25.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
ETF1	2107	genome.wustl.edu	37	5	137844068	137844068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004730.2	-1	validated	p.R414W	1.000	91	0%	50	18%	127	48.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_eRF1_3,superfamily_L30e-like
SLC23A1	9963	genome.wustl.edu	37	5	138707928	138707928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152685.3	-1	reviewed	p.R526C	1.000	201	0%	114	32.5%	6	0%	unknown(0)	deleterious(0)	-	NULL
CXXC5	51523	genome.wustl.edu	37	5	139060383	139060383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016463.7	+1	provisional	p.G92D	0.926	22	0%	12	41.7%	20	40%	unknown(0)	deleterious(0)	-	NULL
PSD2	84249	genome.wustl.edu	37	5	139216781	139216781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032289.2	+1	provisional	p.K541N	1.000	69	0%	29	17.2%	0	-	benign(0.113)	tolerated(0.12)	neutral(0.270)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
NRG2	9542	genome.wustl.edu	37	5	139231242	139231242	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378238	-1	known	p.A427T	0.990	51	0%	22	40.9%	0	-	-	-	-	NULL
SLC4A9	83697	genome.wustl.edu	37	5	139742557	139742557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031467.2	+1	validated	p.A290S	1.000	261	0%	138	29%	0	-	possibly_damaging(0.903)	deleterious(0.04)	deleterious(0.707)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139876838	139876838	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.T993	1.000	351	0%	253	30.4%	26	38.4%	-	-	-	superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139889653	139889653	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.L1331	1.000	252	0%	178	32%	20	50%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139908215	139908215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.P1895H	1.000	300	0%	194	11.3%	52	21.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
APBB3	10307	genome.wustl.edu	37	5	139940234	139940234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006051.3	-1	reviewed	p.H348R	0.703	66	1.5%	34	41.2%	7	28.5%	benign(0.005)	tolerated(0.35)	neutral(0.021)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
APBB3	10307	genome.wustl.edu	37	5	139942297	139942297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006051.3	-1	reviewed	p.S101Y	0.958	137	0%	71	9.9%	4	25%	possibly_damaging(0.44)	deleterious(0.03)	deleterious(0.508)	NULL
WDR55	54853	genome.wustl.edu	37	5	140047918	140047918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017706.4	+1	validated	p.Q97H	1.000	220	0%	91	31.9%	35	34.2%	benign(0.23)	tolerated(0.06)	neutral(0.346)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HARS	3035	genome.wustl.edu	37	5	140070841	140070841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002109.3	-1	reviewed	p.R17C	0.385	30	0%	21	47.6%	31	35.4%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_S15/NS1_bind
ENSG00000249821	0	genome.wustl.edu	37	5	140165767	140165767	+	RNA	SNP	G	G	A	rs138966220	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508944	-1	known	NULL	0.000	47	0%	29	20.7%	0	-	-	-	-	-
PCDHA7	56141	genome.wustl.edu	37	5	140215120	140215120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.Q384H	0.415	211	0%	105	31.4%	0	-	benign(0.028)	tolerated(0.05)	neutral(0.347)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA7	56141	genome.wustl.edu	37	5	140215447	140215447	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.S493	0.955	44	0%	25	40%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140221150	140221150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.G82C	1.000	184	0%	83	9.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222535	140222535	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.P543	0.194	51	0%	32	15.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222706	140222706	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.D600	1.000	73	0%	37	32.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140230241	140230241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.L721M	0.989	73	0%	42	26.2%	0	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
PCDHA10	56139	genome.wustl.edu	37	5	140236732	140236732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018901.2	+1	reviewed	p.V367I	0.013	134	0%	62	27.4%	0	-	possibly_damaging(0.9)	tolerated(0.08)	deleterious(0.656)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140250375	140250375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.A563T	0.000	44	0%	28	35.7%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262244	140262244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.P131S	1.000	304	0%	152	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140431069	140431069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013340.2	+1	reviewed	p.R5H	0.011	76	0%	60	31.7%	0	-	benign(0.016)	tolerated(0.42)	neutral(0.015)	NULL
PCDHB1	29930	genome.wustl.edu	37	5	140432673	140432673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013340.2	+1	reviewed	p.L540M	0.194	148	0%	59	25.4%	0	-	benign(0.065)	deleterious(0)	neutral(0.449)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB2	56133	genome.wustl.edu	37	5	140474450	140474450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018936.2	+1	reviewed	p.A26T	0.000	131	0%	77	33.8%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
PCDHB2	56133	genome.wustl.edu	37	5	140475190	140475190	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018936.2	+1	reviewed	p.D272	0.091	221	0%	123	30.1%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB3	56132	genome.wustl.edu	37	5	140481764	140481764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.G511S	0.990	237	0%	132	24.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140482330	140482330	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.S699	0.009	165	0%	98	57.1%	0	-	-	-	-	NULL
PCDHB3	56132	genome.wustl.edu	37	5	140482368	140482368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.R712Q	0.021	140	0%	76	9.2%	0	-	possibly_damaging(0.82)	deleterious(0.01)	deleterious(0.716)	NULL
PCDHB4	56131	genome.wustl.edu	37	5	140501661	140501661	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018938.2	+1	reviewed	p.L27	0.000	105	0%	73	19.2%	0	-	-	-	-	NULL
PCDHB5	26167	genome.wustl.edu	37	5	140516821	140516821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015669.2	+1	reviewed	p.S602L	1.000	112	0%	56	33.9%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB17	54661	genome.wustl.edu	37	5	140536974	140536974	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_001280.1	+1	provisional	NULL	0.990	427	0.2%	206	21.4%	1	0%	-	-	-	-
PCDHB7	56129	genome.wustl.edu	37	5	140552540	140552540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018940.2	+1	reviewed	p.G42C	0.883	139	0%	61	36.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHB8	56128	genome.wustl.edu	37	5	140558877	140558877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.T421I	0.936	468	0%	221	19%	1	0%	benign(0.392)	deleterious(0)	deleterious(0.570)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559400	140559400	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.G595	0.406	85	0%	46	19.6%	5	20%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB10	56126	genome.wustl.edu	37	5	140573706	140573706	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018930.3	+1	reviewed	p.F527	0.813	227	0.4%	114	19.3%	9	11.1%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140579592	140579592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018931.2	+1	reviewed	p.G82E	0.978	269	0%	127	26.8%	10	70%	possibly_damaging(0.693)	deleterious(0)	deleterious(0.693)	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140590000	140590000	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.N507	0.710	253	0%	100	29%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140594087	140594087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018933.2	+1	reviewed	p.S131Y	0.868	363	0%	180	10%	1	0%	possibly_damaging(0.761)	deleterious(0)	deleterious(0.726)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHB13	56123	genome.wustl.edu	37	5	140595513	140595513	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018933.2	+1	reviewed	p.L606	0.999	134	0%	47	36.2%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB14	56122	genome.wustl.edu	37	5	140605458	140605458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018934.2	+1	reviewed	p.G794V	0.003	149	0.7%	79	27.8%	17	17.6%	benign(0.003)	tolerated(0.07)	neutral(0.319)	NULL
ENSG00000251462	0	genome.wustl.edu	37	5	140621074	140621074	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503443	-1	known	NULL	0.014	101	0%	57	49.1%	0	-	-	-	-	-
PCDHB15	56121	genome.wustl.edu	37	5	140626837	140626837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.P564L	1.000	90	0%	40	35%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cadherin
PCDHB15	56121	genome.wustl.edu	37	5	140626986	140626986	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.L614	0.995	59	0%	34	23.5%	9	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SLC25A2	83884	genome.wustl.edu	37	5	140682845	140682845	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031947.2	-1	reviewed	p.S196	0.000	369	0.3%	222	29.7%	0	-	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A2	83884	genome.wustl.edu	37	5	140683404	140683404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031947.2	-1	reviewed	p.A10V	0.992	78	0%	36	13.9%	0	-	benign(0.004)	tolerated(1)	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
PCDHGA3	56112	genome.wustl.edu	37	5	140723799	140723799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.V67I	0.964	176	0%	101	26.7%	0	-	benign(0.037)	tolerated(0.29)	neutral(0.031)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140731694	140731694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018922.2	+1	reviewed	p.R623C	1.000	55	0%	33	21.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140740410	140740410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.N236	0.407	94	0%	64	29.7%	1	0%	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745868	140745868	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.T657	0.106	113	0%	58	25.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140746179	140746179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.A761V	0.801	182	0%	99	13.1%	0	-	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140768192	140768192	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.Y247	1.000	339	0%	170	22.9%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768978	140768978	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.S509	1.000	68	0%	42	28.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140778713	140778713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.S340N	0.000	235	0%	158	25.9%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB5	56101	genome.wustl.edu	37	5	140779362	140779362	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.P556	0.000	39	0%	20	20%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140783747	140783747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.L410I	0.962	95	0%	61	27.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA9	56107	genome.wustl.edu	37	5	140784365	140784365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018921.2	+1	reviewed	p.L616I	0.955	164	0%	72	33.3%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB6	56100	genome.wustl.edu	37	5	140788389	140788389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018926.2	+1	reviewed	p.S207Y	0.000	72	0%	22	18.2%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB7	56099	genome.wustl.edu	37	5	140798225	140798225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018927.2	+1	reviewed	p.T267A	0.961	121	0%	49	42.9%	0	-	possibly_damaging(0.74)	deleterious(0.04)	deleterious(0.620)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801789	140801789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.T332M	0.017	168	0%	91	30.8%	0	-	benign(0.152)	deleterious(0.01)	neutral(0.419)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802601	140802601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.A603T	1.000	142	0%	50	34%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC4	56098	genome.wustl.edu	37	5	140864744	140864744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018928.2	+1	reviewed	p.L2I	0.997	136	0.7%	67	28.4%	0	-	benign(0.066)	tolerated(0.3)	neutral(0.033)	NULL
PCDHGC4	56098	genome.wustl.edu	37	5	140865892	140865892	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018928.2	+1	reviewed	p.D384	0.672	288	0%	121	24%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DIAPH1	1729	genome.wustl.edu	37	5	140958764	140958764	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005219.4	-1	reviewed	e9-1	1.000	930	0.1%	486	28.4%	12	100%	-	-	-	-
RELL2	285613	genome.wustl.edu	37	5	141018584	141018584	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130029.1	+1	validated	p.S105T	1.000	45	0%	24	33.3%	1	0%	possibly_damaging(0.631)	tolerated(0.19)	neutral(0.270)	NULL
FCHSD1	89848	genome.wustl.edu	37	5	141025711	141025711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033449.1	-1	provisional	p.E364D	0.471	38	0%	19	26.3%	4	50%	benign(0.058)	tolerated(0.34)	neutral(0.026)	NULL
FCHSD1	89848	genome.wustl.edu	37	5	141028986	141028986	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033449.1	-1	provisional	p.S117	0.994	388	0%	174	32.2%	1	100%	-	-	-	NULL
ARAP3	64411	genome.wustl.edu	37	5	141049350	141049350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.A760T	0.999	541	0.6%	237	29.1%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMSmart_PH,superfamily_SSF50729
ARAP3	64411	genome.wustl.edu	37	5	141052477	141052477	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.W370*	1.000	114	0%	50	26%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ARAP3	64411	genome.wustl.edu	37	5	141059328	141059328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.V196L	1.000	73	0%	32	31.2%	1	0%	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
PCDH1	5097	genome.wustl.edu	37	5	141233876	141233876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032420.2	-1	reviewed	p.A1149T	1.000	43	0%	24	54.2%	17	35.2%	benign(0.01)	tolerated(0.16)	neutral(0.060)	NULL
PCDH1	5097	genome.wustl.edu	37	5	141237022	141237022	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032420.2	-1	reviewed	p.R1038	0.729	22	0.000	9	0.556	16	62.5%	-	-	-	NULL
PCDH1	5097	genome.wustl.edu	37	5	141244070	141244070	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032420.2	-1	reviewed	p.D609A	1.000	302	0%	148	28.4%	18	33.3%	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDH1	5097	genome.wustl.edu	37	5	141248805	141248805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032420.2	-1	reviewed	p.A78T	0.984	125	0%	47	27.7%	16	37.5%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141335349	141335349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016580.2	-1	reviewed	p.L690M	0.000	143	0%	51	37.3%	2	0%	benign(0.002)	tolerated(0.14)	neutral(0.249)	HMMSmart_CA,superfamily_Cadherin
PCDH12	51294	genome.wustl.edu	37	5	141335351	141335351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016580.2	-1	reviewed	p.A689D	0.000	135	0.7%	49	20.4%	2	0%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMSmart_CA,superfamily_Cadherin
KCTD16	57528	genome.wustl.edu	37	5	143853420	143853420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020768.3	+1	validated	p.R344C	1.000	187	0%	137	35.8%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
GRXCR2	643226	genome.wustl.edu	37	5	145252317	145252317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080516.1	-1	provisional	p.R72M	0.986	247	0%	156	23.1%	0	-	benign(0.114)	tolerated(0.08)	neutral(0.309)	NULL
SH3RF2	153769	genome.wustl.edu	37	5	145439722	145439722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152550.3	+1	validated	p.P617S	1.000	355	0%	161	21.1%	3	0%	possibly_damaging(0.566)	tolerated(0.23)	neutral(0.235)	NULL
PLAC8L1	153770	genome.wustl.edu	37	5	145477785	145477785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029869.1	-1	provisional	p.A64T	0.000	122	0%	90	11.1%	2	50%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
LARS	51520	genome.wustl.edu	37	5	145522543	145522543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020117.9	-1	reviewed	p.E661G	1.000	337	0%	249	28.5%	76	39.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_Nucleotidylyl transferase
RBM27	54439	genome.wustl.edu	37	5	145613225	145613225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018989.1	+1	validated	p.P355T	0.994	95	0%	65	44.6%	12	58.3%	possibly_damaging(0.489)	deleterious(0)	deleterious(0.607)	NULL
RBM27	54439	genome.wustl.edu	37	5	145638113	145638113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018989.1	+1	validated	p.S566G	0.968	172	0%	116	25%	20	60%	benign(0.077)	tolerated(0.25)	neutral(0.042)	NULL
TCERG1	10915	genome.wustl.edu	37	5	145834749	145834749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.R64W	0.999	251	0%	125	40.8%	38	44.7%	unknown(0)	deleterious(0.04)	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145851115	145851115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.T526I	1.000	325	0%	186	29%	15	46.6%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
TCERG1	10915	genome.wustl.edu	37	5	145862161	145862161	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.D631	0.282	286	0%	183	27.3%	13	46.1%	-	-	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145890132	145890132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.V1075A	1.000	126	0%	85	17.6%	46	21.7%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00441
DPYSL3	1809	genome.wustl.edu	37	5	146795287	146795287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001387.2	-1	validated	p.L155F	1.000	364	0%	271	11.4%	17	11.7%	possibly_damaging(0.754)	deleterious(0)	deleterious(0.723)	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
JAKMIP2	9832	genome.wustl.edu	37	5	147040936	147040936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.V68M	1.000	555	0.2%	322	27.6%	0	-	probably_damaging(0.963)	tolerated(0.29)	neutral(0.435)	NULL
SPINK5	11005	genome.wustl.edu	37	5	147504370	147504370	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.K903	0.143	99	0%	80	27.5%	0	-	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2
SPINK5	11005	genome.wustl.edu	37	5	147510951	147510951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127698.1	+1	reviewed	p.L1062M	1.000	525	0.4%	307	10.7%	2	50%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Kazal_1,HMMSmart_SM00280,superfamily_Kazal-type serine protease inhibitors
SPINK7	84651	genome.wustl.edu	37	5	147693705	147693705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032566.2	+1	validated	p.P44T	1.000	381	0%	263	28.5%	0	-	possibly_damaging(0.914)	tolerated(0.08)	deleterious(0.666)	HMMSmart_KAZAL,superfamily_SSF100895
SPINK7	84651	genome.wustl.edu	37	5	147693777	147693777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032566.2	+1	validated	p.T68A	0.227	244	0.4%	180	26.1%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	HMMPfam_Kazal_1,HMMSmart_KAZAL,superfamily_SSF100895
ADRB2	154	genome.wustl.edu	37	5	148207421	148207421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000024.5	+1	reviewed	p.R343C	0.809	146	0%	107	35.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Family A G protein-coupled receptor-like
SH3TC2	79628	genome.wustl.edu	37	5	148406261	148406261	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024577.3	-1	reviewed	p.N976fs	0.012	-	-	-	-	-	-	-	-	-	superfamily_TPR-like
AFAP1L1	134265	genome.wustl.edu	37	5	148695422	148695422	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.S353	0.992	67	0%	39	20.5%	0	-	-	-	-	NULL
GRPEL2	134266	genome.wustl.edu	37	5	148730600	148730600	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152407.3	+1	validated	p.R145*	1.000	313	0%	212	26.9%	12	33.3%	-	-	-	HMMPfam_GrpE
PDE6A	5145	genome.wustl.edu	37	5	149286908	149286908	+	Silent	SNP	G	G	A	rs121918577		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000440.2	-1	reviewed	p.S344	0.823	574	0.2%	336	28.3%	0	-	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
SLC26A2	1836	genome.wustl.edu	37	5	149357559	149357559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.G115D	1.000	382	0.3%	263	29.7%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC26A2	1836	genome.wustl.edu	37	5	149359860	149359860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.A235V	0.881	493	0.2%	324	23.8%	13	30.7%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
SLC26A2	1836	genome.wustl.edu	37	5	149360318	149360318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000112.3	+1	reviewed	p.A388S	1.000	195	0%	152	27.6%	5	40%	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_Sulfate_transp
CSF1R	1436	genome.wustl.edu	37	5	149441368	149441368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005211.3	-1	reviewed	p.E557D	0.856	191	0.5%	67	11.9%	10	0%	possibly_damaging(0.434)	tolerated(0.59)	neutral(0.146)	NULL
PDGFRB	5159	genome.wustl.edu	37	5	149499058	149499058	+	Missense_Mutation	SNP	C	C	T	rs66748971		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.A924T	1.000	136	0.7%	54	18.5%	16	0%	possibly_damaging(0.467)	tolerated(0.53)	neutral(0.161)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
PDGFRB	5159	genome.wustl.edu	37	5	149514484	149514484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.P154S	1.000	180	0%	79	22.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CAMK2A	815	genome.wustl.edu	37	5	149607824	149607824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015981.3	-1	reviewed	p.A390S	0.991	89	0%	54	27.8%	0	-	benign(0)	tolerated(1)	-	superfamily_Protein kinase-like (PK-like),HMMPfam_CaMKII_AD
TCOF1	6949	genome.wustl.edu	37	5	149754675	149754675	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135243.1	+1	reviewed	p.S479	0.631	80	0%	34	20.6%	13	61.5%	-	-	-	HMMPfam_Treacle
CD74	972	genome.wustl.edu	37	5	149785870	149785870	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025159.1	-1	validated	p.A131	0.891	108	0%	46	26.1%	1811	0.3%	unknown(0)	-	-	NULL
NDST1	3340	genome.wustl.edu	37	5	149901156	149901156	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.E114*	1.000	118	0%	61	29.5%	18	27.7%	-	-	-	NULL
NDST1	3340	genome.wustl.edu	37	5	149915331	149915331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.V441M	0.868	51	0%	25	28%	43	69.7%	benign(0.3)	tolerated(0.1)	neutral(0.379)	NULL
ZNF300	91975	genome.wustl.edu	37	5	150276082	150276082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052860.2	-1	reviewed	p.P240H	0.185	530	0%	425	30.1%	0	-	benign(0.009)	tolerated(0.14)	neutral(0.250)	superfamily_C2H2 and C2HC zinc fingers
ANXA6	309	genome.wustl.edu	37	5	150488066	150488066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001155.3	-1	reviewed	p.T577I	1.000	389	0%	207	23.7%	143	37%	benign(0)	deleterious(0.05)	neutral(0.345)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_ANX
SLC36A1	206358	genome.wustl.edu	37	5	150853329	150853329	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078483.2	+1	reviewed	p.G273	0.618	310	0%	182	23.6%	5	40%	-	-	-	HMMPfam_Aa_trans
FAT2	2196	genome.wustl.edu	37	5	150911508	150911508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.S3151T	1.000	111	0%	55	29.1%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150920273	150920273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R2965M	0.620	138	0%	82	30.5%	1	0%	possibly_damaging(0.835)	deleterious(0.04)	deleterious(0.667)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT2	2196	genome.wustl.edu	37	5	150946865	150946865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.R543H	0.999	206	0%	106	36.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00112,superfamily_Cadherin-like
SPARC	6678	genome.wustl.edu	37	5	151047144	151047144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003118.2	-1	provisional	p.D157N	1.000	58	0%	35	31.4%	347	0%	possibly_damaging(0.871)	deleterious(0.01)	deleterious(0.744)	HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand
GLRA1	2741	genome.wustl.edu	37	5	151239359	151239359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000171.3	-1	reviewed	p.L155I	1.000	143	0%	75	28%	0	-	possibly_damaging(0.865)	deleterious(0.01)	deleterious(0.741)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
NMUR2	56923	genome.wustl.edu	37	5	151775049	151775049	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020167.4	-1	reviewed	p.A303D	0.006	401	0%	221	30.3%	1	0%	benign(0.051)	tolerated(0.63)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NMUR2	56923	genome.wustl.edu	37	5	151784127	151784127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020167.4	-1	reviewed	p.S183I	1.000	167	0%	80	38.8%	1	0%	possibly_damaging(0.748)	tolerated(1)	neutral(0.275)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM114A2	10827	genome.wustl.edu	37	5	153390872	153390872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018691.2	-1	validated	p.D308N	1.000	339	0%	275	12.4%	20	0%	benign(0.04)	tolerated(0.1)	neutral(0.289)	NULL
FAM114A2	10827	genome.wustl.edu	37	5	153414295	153414295	+	Missense_Mutation	SNP	C	C	A	rs58312686		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442256	-1	known	p.Q73H	0.104	396	0%	272	29.8%	0	-	-	-	-	NULL
GALNT10	55568	genome.wustl.edu	37	5	153709223	153709223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198321.3	+1	reviewed	p.V165I	1.000	306	0%	216	33.3%	32	40.6%	benign(0.074)	tolerated(0.54)	neutral(0.013)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
LARP1	23367	genome.wustl.edu	37	5	154170210	154170210	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.G91	0.966	184	0%	97	29.9%	26	46.1%	-	-	-	NULL
C5orf4	10826	genome.wustl.edu	37	5	154214479	154214479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032385.3	-1	validated	p.G22S	1.000	41	0%	27	14.8%	2	0%	benign(0.013)	tolerated(0.95)	neutral(0.001)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154278182	154278182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.A1055T	1.000	145	0%	71	26.8%	21	76.1%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154296573	154296573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.L614M	1.000	277	0%	183	26.2%	4	50%	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	superfamily_WD40 repeat-like
GEMIN5	25929	genome.wustl.edu	37	5	154311018	154311018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.G261W	1.000	494	0%	289	26%	3	0%	probably_damaging(0.996)	tolerated(0.18)	deleterious(0.518)	superfamily_WD40 repeat-like
KIF4B	285643	genome.wustl.edu	37	5	154396738	154396738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099293.1	+1	provisional	p.D1107N	0.989	236	0%	129	36.4%	0	-	benign(0.003)	tolerated(0.79)	neutral(0.001)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156522333	156522333	+	Silent	SNP	G	G	A	rs183238604	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.G220	0.007	382	0%	270	30%	5	0%	-	-	-	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156525902	156525902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.Q163H	1.000	188	0.5%	137	29.9%	2	0%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	NULL
NIPAL4	348938	genome.wustl.edu	37	5	156890158	156890158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099287.1	+1	reviewed	p.D94N	0.001	227	0%	135	30.4%	0	-	unknown(0)	-	-	NULL
THG1L	54974	genome.wustl.edu	37	5	157159974	157159974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017872.3	+1	provisional	p.I97S	1.000	253	0%	140	32.1%	15	20%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Thg1
UBLCP1	134510	genome.wustl.edu	37	5	158695986	158695986	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145049.3	+1	validated	p.E21D	1.000	165	0%	111	19.8%	37	35.1%	benign(0.001)	tolerated(0.62)	neutral(0.004)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
IL12B	3593	genome.wustl.edu	37	5	158743758	158743758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002187.2	-1	reviewed	p.V308M	0.988	92	0%	53	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,superfamily_FN_III-like
ENSG00000223908	0	genome.wustl.edu	37	5	159450876	159450876	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411779	-1	known	p.K40N	0.997	499	0%	345	28.7%	0	-	-	-	-	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159520704	159520704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130864.1	-1	validated	p.R318M	1.000	214	0%	146	26.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PWWP2A	114825	genome.wustl.edu	37	5	159520916	159520916	+	Silent	SNP	C	C	T	rs142143896	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130864.1	-1	validated	p.P247	0.000	189	0%	128	34.4%	9	55.5%	-	-	-	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821584	159821584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022090.3	-1	validated	p.A305V	1.000	400	0%	231	28.1%	9	11.1%	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
C5orf54	63920	genome.wustl.edu	37	5	159821926	159821926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022090.3	-1	validated	p.F191C	1.000	224	0%	139	18.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLU7	10569	genome.wustl.edu	37	5	159830317	159830317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006425.4	-1	reviewed	p.P579L	1.000	406	0%	218	26.1%	38	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTTG1	9232	genome.wustl.edu	37	5	159854731	159854731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004219.2	+1	reviewed	p.S127I	0.998	239	0%	132	32.6%	74	39.1%	possibly_damaging(0.8)	deleterious(0.02)	deleterious(0.684)	HMMPfam_Securin
ATP10B	23120	genome.wustl.edu	37	5	160025865	160025865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.P1159H	1.000	887	0%	627	30.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160044894	160044894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.R835C	0.623	303	0%	201	34.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP10B	23120	genome.wustl.edu	37	5	160047528	160047528	+	Missense_Mutation	SNP	C	C	T	rs192890224	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.V748M	0.999	85	0%	46	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
GABRB2	2561	genome.wustl.edu	37	5	160721245	160721245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.A461V	1.000	187	0%	86	31.4%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRB2	2561	genome.wustl.edu	37	5	160886695	160886695	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.H131	0.979	138	0%	109	25.7%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRA6	2559	genome.wustl.edu	37	5	161119184	161119184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000811.2	+1	reviewed	p.P355H	0.999	341	0%	228	26.3%	0	-	benign(0.256)	tolerated(0.17)	neutral(0.085)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
GABRA1	2554	genome.wustl.edu	37	5	161292729	161292729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000806.5	+1	reviewed	p.R64C	1.000	419	0%	278	32%	0	-	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HMMR	3161	genome.wustl.edu	37	5	162902538	162902538	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142556.1	+1	reviewed	p.E376	0.990	317	0%	173	28.3%	3	66.6%	-	-	-	NULL
MAT2B	27430	genome.wustl.edu	37	5	162943714	162943714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013283.3	+1	reviewed	p.M239I	1.000	108	0%	47	25.5%	85	38.8%	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_RmlD_sub_bind,superfamily_NAD(P)-binding Rossmann-fold domains
ODZ2	57451	genome.wustl.edu	37	5	167379628	167379628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.P250S	1.000	86	0%	61	26.2%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_Ten_N
ODZ2	57451	genome.wustl.edu	37	5	167642225	167642225	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.A1333	1.000	130	0%	77	33.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
ODZ2	57451	genome.wustl.edu	37	5	167671668	167671668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.V1913M	0.991	74	0%	48	25%	0	-	benign(0.061)	tolerated(0.19)	neutral(0.054)	superfamily_Concanavalin A-like lectins/glucanases
ODZ2	57451	genome.wustl.edu	37	5	167674559	167674559	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.Y2196	0.654	69	0%	39	23.1%	0	-	-	-	-	HMMPfam_RHS_repeat
WWC1	23286	genome.wustl.edu	37	5	167849053	167849053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.L409M	1.000	67	0%	32	34.4%	13	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WWC1	23286	genome.wustl.edu	37	5	167850734	167850734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.G491S	1.000	132	0%	44	25%	42	57.1%	possibly_damaging(0.822)	tolerated(0.45)	neutral(0.323)	NULL
WWC1	23286	genome.wustl.edu	37	5	167855748	167855748	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.D652	0.220	203	0%	90	31.1%	21	57.1%	-	-	-	NULL
ENSG00000233913	0	genome.wustl.edu	37	5	168043469	168043469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421908	+1	known	p.R38Q	1.000	929	0%	585	27.4%	479	0.2%	-	-	-	HMMPfam_Ribosomal_L16,superfamily_Ribosomal protein L10e
SLIT3	6586	genome.wustl.edu	37	5	168201271	168201271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.L422I	0.998	376	0%	178	34.8%	6	16.6%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
CCDC99	54908	genome.wustl.edu	37	5	169026165	169026165	+	Splice_Site	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017785.4	+1	validated	e9+2	1.000	177	0%	115	30.4%	0	-	-	-	-	-
CCDC99	54908	genome.wustl.edu	37	5	169028402	169028402	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017785.4	+1	validated	p.P481	0.000	289	0%	197	17.8%	12	8.3%	-	-	-	NULL
FOXI1	2299	genome.wustl.edu	37	5	169535095	169535095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012188.4	+1	reviewed	p.M206T	1.000	257	0%	132	11.4%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
LCP2	3937	genome.wustl.edu	37	5	169724560	169724560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005565.3	-1	reviewed	p.S19N	0.951	39	0%	17	29.4%	9	0%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
FBXW11	23291	genome.wustl.edu	37	5	171297761	171297761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012300.2	-1	reviewed	p.A460V	1.000	298	0%	182	29.1%	31	54.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
STK10	6793	genome.wustl.edu	37	5	171471985	171471985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005990.3	-1	reviewed	p.E936D	1.000	153	0%	62	21%	27	40.7%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
CPEB4	80315	genome.wustl.edu	37	5	173380238	173380238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030627.2	+1	validated	p.R642H	1.000	421	0%	316	28.5%	9	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
KIAA1191	57179	genome.wustl.edu	37	5	175775042	175775042	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079685.1	-1	validated	p.S197	0.115	364	0%	217	29%	67	35.8%	-	-	-	NULL
UNC5A	90249	genome.wustl.edu	37	5	176305359	176305359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133369.2	+1	validated	p.S662T	1.000	29	0%	14	35.7%	8	50%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
ZNF346	23567	genome.wustl.edu	37	5	176477896	176477896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012279.2	+1	reviewed	p.R221H	1.000	102	0%	57	28.1%	15	53.3%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
FGFR4	2264	genome.wustl.edu	37	5	176517849	176517849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377207	+1	known	p.C228Y	0.000	459	0%	224	29.5%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
LMAN2	10960	genome.wustl.edu	37	5	176764386	176764386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006816.2	-1	reviewed	p.R218H	1.000	27	0%	14	42.9%	471	43.7%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
LMAN2	10960	genome.wustl.edu	37	5	176778236	176778236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006816.2	-1	reviewed	p.S85G	1.000	153	0%	106	11.3%	398	7.2%	benign(0.313)	tolerated(0.17)	neutral(0.157)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
LMAN2	10960	genome.wustl.edu	37	5	176778478	176778478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006816.2	-1	reviewed	p.E57D	1.000	92	0%	54	29.6%	269	43.1%	probably_damaging(0.98)	tolerated(0.12)	deleterious(0.684)	HMMPfam_Lectin_leg-like,superfamily_ConA_like_lec_gl
RGS14	10636	genome.wustl.edu	37	5	176798372	176798372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006480.4	+1	reviewed	p.R453H	0.000	162	0%	71	35.2%	8	25%	benign(0.396)	tolerated(0.06)	neutral(0.450)	NULL
DBN1	1627	genome.wustl.edu	37	5	176887452	176887452	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080881.2	-1	reviewed	p.S314	0.938	158	0%	91	18.7%	144	42.3%	-	-	-	NULL
FAM193B	54540	genome.wustl.edu	37	5	176951602	176951602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019057.3	-1	validated	p.P594H	0.208	22	0%	18	33.3%	23	43.4%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
PROP1	5626	genome.wustl.edu	37	5	177421261	177421261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006261.4	-1	reviewed	p.R63M	0.996	234	0%	94	21.3%	0	-	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	superfamily_Homeodomain-like
AGXT2L2	85007	genome.wustl.edu	37	5	177649869	177649869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153373.2	-1	validated	p.F229V	1.000	65	0%	47	25.5%	16	12.5%	benign(0.029)	deleterious(0.01)	neutral(0.407)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
CLK4	57396	genome.wustl.edu	37	5	178032319	178032319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020666.2	-1	reviewed	p.M400T	1.000	155	0%	98	10.2%	22	45.4%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ZNF354A	6940	genome.wustl.edu	37	5	178139076	178139076	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005649.2	-1	validated	p.I601	0.799	308	0%	148	34.5%	27	37%	-	-	-	superfamily_SSF57667
ZNF354A	6940	genome.wustl.edu	37	5	178156001	178156001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005649.2	-1	validated	p.A8V	0.004	76	0%	44	22.7%	3	0%	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Krueppel-associated_box
GRM6	2916	genome.wustl.edu	37	5	178416330	178416330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000843.3	-1	reviewed	p.E363D	1.000	123	0%	50	26%	0	-	benign(0)	tolerated(0.98)	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ZNF354C	30832	genome.wustl.edu	37	5	178505781	178505781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014594.1	+1	provisional	p.K116N	0.009	242	0%	173	33.5%	1	100%	possibly_damaging(0.793)	tolerated(0.5)	neutral(0.308)	NULL
RUFY1	80230	genome.wustl.edu	37	5	179023579	179023579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025158.3	+1	validated	p.R510W	0.001	135	0%	70	30%	49	48.9%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
LOC729595	729595	genome.wustl.edu	37	5	179121207	179121207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001130734.2	+1	model	p.G4C	1.000	89	0%	52	21.2%	0	-	-	-	-	superfamily_HMG-box
MAML1	9794	genome.wustl.edu	37	5	179192383	179192383	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014757.4	+1	reviewed	p.G124	0.001	435	0.5%	234	26.5%	14	28.5%	-	-	-	NULL
MAML1	9794	genome.wustl.edu	37	5	179195974	179195974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014757.4	+1	reviewed	p.A619T	1.000	588	0%	285	27%	27	33.3%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
SQSTM1	8878	genome.wustl.edu	37	5	179250960	179250960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003900.4	+1	reviewed	p.V135A	1.000	44	0%	23	21.7%	359	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1
TBC1D9B	23061	genome.wustl.edu	37	5	179292271	179292271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198868.2	-1	validated	p.L1019I	1.000	87	0%	52	23.1%	79	50.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GFPT2	9945	genome.wustl.edu	37	5	179743986	179743986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005110.2	-1	provisional	p.R344Q	1.000	228	0%	156	24.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53697
LOC100289003	100289003	genome.wustl.edu	37	5	180219411	180219411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342577.1	+1	model	p.A484T	0.866	36	0%	15	40%	129	36.4%	-	-	-	NULL
BTNL9	153579	genome.wustl.edu	37	5	180477237	180477237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152547.4	+1	validated	p.V202I	0.011	80	0%	38	23.7%	0	-	benign(0.021)	tolerated(0.11)	neutral(0.273)	superfamily_Immunoglobulin
IRF4	3662	genome.wustl.edu	37	6	397217	397217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002460.2	+1	validated	p.R201H	0.995	157	0%	66	30.3%	2	0%	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	NULL
EXOC2	55770	genome.wustl.edu	37	6	633093	633093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018303.4	-1	reviewed	p.C48Y	1.000	208	0%	130	23.1%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,superfamily_Ig_E-set
WRNIP1	56897	genome.wustl.edu	37	6	2770553	2770553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020135.2	+1	reviewed	p.R405H	0.882	87	0%	45	11.1%	41	9.7%	benign(0.154)	deleterious(0.01)	neutral(0.419)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WRNIP1	56897	genome.wustl.edu	37	6	2779576	2779576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020135.2	+1	reviewed	p.G446R	0.997	133	0%	88	25%	58	29.3%	possibly_damaging(0.931)	tolerated(0.36)	neutral(0.398)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WRNIP1	56897	genome.wustl.edu	37	6	2785346	2785346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020135.2	+1	reviewed	p.P610T	0.998	120	0%	57	24.6%	72	31.9%	possibly_damaging(0.893)	tolerated(0.51)	neutral(0.361)	NULL
SERPINB1	1992	genome.wustl.edu	37	6	2838220	2838220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030666.2	-1	provisional	p.S107L	0.990	430	0%	203	27.6%	95	43.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
ENSG00000247767	0	genome.wustl.edu	37	6	2900539	2900539	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499208	+1	novel	NULL	0.000	63	0%	52	28.8%	0	-	-	-	-	-
PRPF4B	8899	genome.wustl.edu	37	6	4041037	4041037	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.R482*	0.771	119	0.8%	66	10.6%	16	0%	-	-	-	NULL
C6orf201	404220	genome.wustl.edu	37	6	4099240	4099240	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085401.1	+1	validated	p.N31T	0.000	183	0%	113	23.9%	0	-	possibly_damaging(0.68)	tolerated(0.06)	deleterious(0.565)	NULL
C6orf201	404220	genome.wustl.edu	37	6	4099255	4099255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085401.1	+1	validated	p.G36D	0.128	207	0%	112	23.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPP40	10799	genome.wustl.edu	37	6	4995496	4995496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006638.2	-1	validated	p.E303G	1.000	149	0.7%	83	30.1%	25	52%	possibly_damaging(0.455)	tolerated(0.15)	neutral(0.390)	HMMPfam_Ribonuc_P_40
RREB1	6239	genome.wustl.edu	37	6	7211077	7211077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.A156T	0.000	419	0.2%	199	15.6%	15	40%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
RREB1	6239	genome.wustl.edu	37	6	7211139	7211139	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.H176	0.322	483	0.2%	235	24.3%	16	43.7%	-	-	-	NULL
DSP	1832	genome.wustl.edu	37	6	7577233	7577233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.E945D	0.997	180	0.6%	114	22.8%	15	20%	probably_damaging(0.971)	tolerated(0.37)	neutral(0.432)	HMMSmart_SM00150,superfamily_Spectrin repeat
DSP	1832	genome.wustl.edu	37	6	7581419	7581419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.R1666W	0.999	222	0%	121	27.3%	29	55.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Prefoldin
DSP	1832	genome.wustl.edu	37	6	7581583	7581585	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.E1723in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Prefoldin
TXNDC5	81567	genome.wustl.edu	37	6	7888970	7888970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030810.2	-1	reviewed	p.P311S	1.000	72	0%	44	34.1%	267	49%	possibly_damaging(0.561)	tolerated(0.51)	neutral(0.201)	NULL
SLC35B3	51000	genome.wustl.edu	37	6	8430202	8430202	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142540.1	-1	validated	p.D64	0.598	157	0.6%	73	26%	19	26.3%	-	-	-	NULL
PAK1IP1	55003	genome.wustl.edu	37	6	10709189	10709189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017906.2	+1	validated	p.V282F	0.994	471	0%	319	32.3%	151	47%	possibly_damaging(0.649)	tolerated(0.09)	deleterious(0.524)	superfamily_WD40_like
MAK	4117	genome.wustl.edu	37	6	10802215	10802215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005906.3	-1	reviewed	p.K247N	1.000	218	0%	134	12.7%	1	0%	benign(0.24)	tolerated(0.07)	neutral(0.343)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NEDD9	4739	genome.wustl.edu	37	6	11190389	11190389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142393.1	-1	validated	p.E571D	0.225	142	0%	74	18.9%	11	9%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12122235	12122235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.R736H	0.999	177	0%	120	17.5%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12123565	12123565	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.I1179	0.000	224	0%	152	32.2%	4	0%	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15374443	15374443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.Q47H	1.000	422	0%	240	27.1%	0	-	possibly_damaging(0.805)	deleterious(0)	deleterious(0.748)	NULL
JARID2	3720	genome.wustl.edu	37	6	15374449	15374449	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.A49	0.136	422	0%	236	27.5%	0	-	-	-	-	NULL
JARID2	3720	genome.wustl.edu	37	6	15468832	15468832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.V185F	0.081	243	0%	135	26.7%	4	25%	benign(0.313)	deleterious(0.01)	deleterious(0.503)	NULL
JARID2	3720	genome.wustl.edu	37	6	15487603	15487603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.A246T	1.000	104	0%	74	21.6%	4	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
JARID2	3720	genome.wustl.edu	37	6	15512545	15512545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004973.2	+1	reviewed	p.C1020Y	1.000	135	0%	48	12.5%	6	50%	probably_damaging(0.977)	tolerated(0.07)	deleterious(0.738)	HMMSmart_SM00558,HMMPfam_JmjC
NUP153	9972	genome.wustl.edu	37	6	17624983	17624983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005124.2	-1	reviewed	p.G1328E	1.000	209	0%	147	29.9%	56	33.9%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
NUP153	9972	genome.wustl.edu	37	6	17669229	17669229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005124.2	-1	reviewed	p.D349Y	0.019	105	0%	70	21.4%	12	50%	possibly_damaging(0.654)	tolerated(0.08)	deleterious(0.530)	HMMPfam_Nup153
KDM1B	221656	genome.wustl.edu	37	6	18166504	18166504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153042.3	+1	validated	p.K104N	0.981	202	0%	102	23.5%	10	20%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
KDM1B	221656	genome.wustl.edu	37	6	18171683	18171683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153042.3	+1	validated	p.C169	0.998	218	0%	111	27.9%	24	41.6%	-	-	-	HMMPfam_zf-CW
RNF144B	255488	genome.wustl.edu	37	6	18465259	18465259	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182757.2	+1	validated	p.C291*	0.996	61	0%	37	24.3%	22	31.8%	-	-	-	NULL
CDKAL1	54901	genome.wustl.edu	37	6	21201394	21201394	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.I479	1.000	333	0%	197	26.4%	12	83.3%	-	-	-	HMMPfam_TRAM,superfamily_Radical SAM enzymes
NRSN1	140767	genome.wustl.edu	37	6	24146141	24146141	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080723.4	+1	validated	p.R185	0.996	265	0.4%	197	23.9%	1	0%	-	-	-	NULL
MRS2	57380	genome.wustl.edu	37	6	24412499	24412499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020662.2	+1	validated	p.R155H	1.000	148	0%	84	23.8%	36	55.5%	benign(0.013)	tolerated(0.56)	neutral(0.007)	HMMPfam_CorA
ALDH5A1	7915	genome.wustl.edu	37	6	24503567	24503567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170740.1	+1	reviewed	p.R172H	1.000	109	0%	64	35.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldedh,superfamily_ALDH-like
LRRC16A	55604	genome.wustl.edu	37	6	25472749	25472749	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377969	+1	known	p.E131*	1.000	48	0%	31	19.4%	7	14.2%	-	-	-	superfamily_SSF52047
SLC17A3	10786	genome.wustl.edu	37	6	25851050	25851050	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098486.1	-1	validated	p.P256	0.006	431	0%	246	24%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC17A3	10786	genome.wustl.edu	37	6	25855459	25855459	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098486.1	-1	validated	e5-1	0.902	159	0%	93	37.6%	0	-	-	-	-	-
SLC17A2	10246	genome.wustl.edu	37	6	25917040	25917040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005835.2	-1	validated	p.A268V	0.998	188	0%	110	16.4%	0	-	possibly_damaging(0.473)	deleterious(0.01)	deleterious(0.561)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
TRIM38	10475	genome.wustl.edu	37	6	25966976	25966976	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006355.2	+1	reviewed	p.Q76*	0.939	180	0%	120	31.7%	10	20%	-	-	-	superfamily_SSF57850
HIST1H2BB	3018	genome.wustl.edu	37	6	26043703	26043703	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021062.2	-1	reviewed	p.G61	1.000	291	0%	170	29.4%	1	100%	-	-	-	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
HFE	3077	genome.wustl.edu	37	6	26092936	26092936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000410.3	+1	reviewed	p.H214Y	0.205	481	0%	251	26.7%	3	0%	possibly_damaging(0.805)	deleterious(0.03)	deleterious(0.667)	superfamily_Immunoglobulin
HIST1H3D	8351	genome.wustl.edu	37	6	26197295	26197295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003530.3	-1	reviewed	p.L62	1.000	156	0%	83	13.3%	23	13%	-	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2BG	8339	genome.wustl.edu	37	6	26216691	26216691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003518.3	-1	reviewed	p.G61C	1.000	442	0%	217	25.3%	14	35.7%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2BI	8346	genome.wustl.edu	37	6	26273489	26273489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003525.2	+1	reviewed	p.Q96K	1.000	272	0%	113	29.2%	0	-	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold
BTN3A2	11118	genome.wustl.edu	37	6	26369053	26369053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007047.3	+1	reviewed	p.V116I	0.000	406	0%	214	27.6%	22	36.3%	benign(0.159)	tolerated(0.17)	neutral(0.073)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
BTN2A2	10385	genome.wustl.edu	37	6	26388387	26388387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.S197P	0.000	322	0%	166	13.3%	1	0%	benign(0.011)	tolerated(0.21)	neutral(0.044)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
BTN2A2	10385	genome.wustl.edu	37	6	26392755	26392755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.A378T	0.485	433	0%	220	14.5%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00589
BTN3A1	11119	genome.wustl.edu	37	6	26406327	26406327	+	Silent	SNP	G	G	A	rs1057923		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.P92	0.006	351	0%	188	22.9%	17	11.7%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTN3A1	11119	genome.wustl.edu	37	6	26406397	26406397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007048.5	+1	validated	p.V116I	0.040	295	0%	180	27.2%	10	50%	benign(0.079)	tolerated(0.13)	neutral(0.258)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BTN1A1	696	genome.wustl.edu	37	6	26502144	26502144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001732.2	+1	validated	p.L136M	0.000	83	0%	45	24.4%	0	-	benign(0.133)	tolerated(0.06)	neutral(0.334)	HMMSmart_SM00409,superfamily_Immunoglobulin
ABT1	29777	genome.wustl.edu	37	6	26598693	26598693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013375.2	+1	reviewed	p.Q213H	1.000	69	0%	41	34.1%	73	38.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ZNF322	79692	genome.wustl.edu	37	6	26638443	26638443	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024639.3	-1	validated	p.A113	1.000	881	0%	644	26.2%	8	62.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HIST1H4I	8294	genome.wustl.edu	37	6	27107333	27107333	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003495.2	+1	reviewed	p.V82	1.000	84	0%	39	17.9%	2	50%	-	-	-	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
PRSS16	10279	genome.wustl.edu	37	6	27217002	27217002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005865.3	+1	reviewed	p.R154H	0.993	352	0%	175	33.7%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Peptidase_S28,superfamily_SSF53474
ZNF184	7738	genome.wustl.edu	37	6	27419467	27419467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007149.2	-1	validated	p.R624Q	0.218	392	0%	260	28.1%	20	40%	probably_damaging(0.998)	tolerated(0.6)	deleterious(0.479)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
HIST1H2BL	8340	genome.wustl.edu	37	6	27775452	27775452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003519.3	-1	reviewed	p.A78D	1.000	200	0%	103	35%	2	50%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
ZSCAN16	80345	genome.wustl.edu	37	6	28093379	28093379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025231.1	+1	provisional	p.P53H	0.940	695	0.3%	407	15.2%	11	27.2%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	HMMPfam_SCAN,HMMSmart_SCAN
ZNF193	7746	genome.wustl.edu	37	6	28195283	28195283	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006299.3	+1	provisional	e1+1	0.729	142	0%	74	27%	1	100%	-	-	-	-
ZNF193	7746	genome.wustl.edu	37	6	28195564	28195564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006299.3	+1	provisional	p.P173S	0.086	186	0%	104	24%	14	28.5%	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	NULL
ZKSCAN4	387032	genome.wustl.edu	37	6	28217472	28217472	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019110.3	-1	provisional	p.H188	0.005	617	0%	354	31.6%	4	25%	-	-	-	NULL
ZNF323	64288	genome.wustl.edu	37	6	28297401	28297401	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135215.1	-1	validated	p.I20	0.000	280	0%	156	21.8%	31	67.7%	-	-	-	NULL
ZKSCAN3	80317	genome.wustl.edu	37	6	28327391	28327391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024493.2	+1	validated	p.A10T	0.317	270	0%	140	20.7%	0	-	benign(0.002)	tolerated(0.45)	neutral(0.012)	NULL
ZKSCAN3	80317	genome.wustl.edu	37	6	28327702	28327702	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024493.2	+1	validated	p.S113	0.997	175	0%	106	28.3%	2	0%	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
SCAND3	114821	genome.wustl.edu	37	6	28540164	28540164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.D1168Y	0.213	132	0%	67	25.4%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28540443	28540443	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.R1075*	1.000	226	0%	176	27.3%	3	0%	-	-	-	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543472	28543472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.I337T	1.000	312	0.3%	195	26.7%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
OR2J1	442185	genome.wustl.edu	37	6	29069055	29069055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377171	+1	known	p.E112D	0.001	731	0%	496	11.7%	0	-	possibly_damaging(0.465)	deleterious(0.01)	deleterious(0.558)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2J1	442185	genome.wustl.edu	37	6	29069297	29069297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377171	+1	known	p.T193I	0.005	513	0.2%	396	26.8%	0	-	benign(0.022)	tolerated(0.2)	neutral(0.050)	HMMPfam_7tm_1,superfamily_SSF81321
OR12D3	81797	genome.wustl.edu	37	6	29342375	29342375	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030959.2	-1	provisional	p.C230	0.000	450	0%	313	11.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR2H1	26716	genome.wustl.edu	37	6	29429751	29429751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030883.3	+1	provisional	p.L69I	0.071	510	0%	327	31.2%	0	-	probably_damaging(0.992)	tolerated(0.57)	neutral(0.454)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABBR1	2550	genome.wustl.edu	37	6	29572681	29572681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001470.2	-1	reviewed	p.V842I	0.987	309	0%	187	32.6%	2	50%	benign(0.021)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_3
GABBR1	2550	genome.wustl.edu	37	6	29572762	29572762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001470.2	-1	reviewed	p.L815M	1.000	195	0%	115	20.9%	2	0%	probably_damaging(0.979)	tolerated(0.56)	neutral(0.428)	HMMPfam_7tm_3
MOG	4340	genome.wustl.edu	37	6	29634024	29634024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002433.4	+1	reviewed	p.L178M	0.995	177	0%	87	12.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZFP57	346171	genome.wustl.edu	37	6	29640993	29640993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109809.2	-1	reviewed	p.G279C	0.002	342	0%	190	25.3%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
HLA-F	3134	genome.wustl.edu	37	6	29691981	29691981	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098479.1	+1	reviewed	p.C122	0.713	107	0%	55	30.9%	26	0%	-	-	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
TRIM31	11074	genome.wustl.edu	37	6	30078430	30078430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007028.3	-1	reviewed	p.R180M	0.000	441	0.2%	241	19.9%	0	-	benign(0.091)	tolerated(0.08)	neutral(0.306)	NULL
TRIM15	89870	genome.wustl.edu	37	6	30131749	30131749	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033229.2	+1	reviewed	p.N96	0.001	114	0.9%	48	31.2%	0	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain
TRIM26	7726	genome.wustl.edu	37	6	30157216	30157216	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003449.3	-1	validated	p.R295*	0.875	214	0%	104	28.8%	25	44%	-	-	-	NULL
GNL1	2794	genome.wustl.edu	37	6	30522408	30522408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005275.3	-1	validated	p.W182R	1.000	203	0%	97	26.8%	32	34.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX16	8449	genome.wustl.edu	37	6	30630404	30630404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003587.4	-1	reviewed	p.S515I	1.000	98	0%	45	37.8%	17	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPP1R18	170954	genome.wustl.edu	37	6	30653019	30653019	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134870.1	-1	validated	p.T259	0.001	545	0.2%	258	26.7%	9	0%	-	-	-	NULL
PPP1R18	170954	genome.wustl.edu	37	6	30653062	30653062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134870.1	-1	validated	p.S245F	0.014	505	0%	274	12.8%	7	0%	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
PPP1R18	170954	genome.wustl.edu	37	6	30653742	30653742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134870.1	-1	validated	p.E18D	1.000	98	0%	46	17.4%	7	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
NRM	11270	genome.wustl.edu	37	6	30657882	30657882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007243.1	-1	provisional	p.R91Q	0.282	264	0%	169	32%	9	33.3%	possibly_damaging(0.449)	deleterious(0.05)	deleterious(0.492)	NULL
FLOT1	10211	genome.wustl.edu	37	6	30698878	30698878	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005803.2	-1	reviewed	e8-1	1.000	80	0%	43	16.3%	2	50%	-	-	-	-
PSORS1C2	170680	genome.wustl.edu	37	6	31105801	31105801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014069.2	-1	validated	p.P113H	0.830	72	0%	17	47.1%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	NULL
PSORS1C2	170680	genome.wustl.edu	37	6	31105888	31105888	+	Missense_Mutation	SNP	G	G	A	rs34410211		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014069.2	-1	validated	p.P84L	0.966	106	0%	54	24.1%	1	0%	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	NULL
CCHCR1	54535	genome.wustl.edu	37	6	31116409	31116409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105564.1	-1	validated	p.R487C	0.962	231	0%	108	29.6%	30	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HCR
POU5F1	5460	genome.wustl.edu	37	6	31137991	31137991	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002701.4	-1	reviewed	e1+2	0.003	197	0%	99	30.3%	0	-	-	-	-	-
DDX39B	7919	genome.wustl.edu	37	6	31500650	31500650	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417023	-1	known	p.R22H	0.997	174	0%	83	32.5%	299	79.5%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP6V1G2	534	genome.wustl.edu	37	6	31516056	31516056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415099	-1	known	p.G50D	0.947	48	0%	36	27.8%	31	45.1%	unknown(0)	-	-	NULL
NFKBIL1	4795	genome.wustl.edu	37	6	31516106	31516106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005007.3	+1	reviewed	p.R75H	1.000	34	0%	27	18.5%	32	21.8%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	HMMPfam_Ank,superfamily_Ankyrin repeat
PRRC2A	7916	genome.wustl.edu	37	6	31591543	31591543	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.K49N	1.000	109	0%	73	11%	68	50%	unknown(0)	deleterious(0)	-	HMMPfam_BAT2_N
PRRC2A	7916	genome.wustl.edu	37	6	31596967	31596967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.E604D	1.000	611	0%	271	28.8%	98	35.7%	unknown(0)	tolerated(0.14)	-	NULL
PRRC2A	7916	genome.wustl.edu	37	6	31604186	31604186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.S1942L	0.367	430	0.2%	201	31.8%	287	41.4%	benign(0.31)	deleterious(0.01)	deleterious(0.502)	NULL
BAG6	7917	genome.wustl.edu	37	6	31610082	31610082	+	Silent	SNP	G	G	A	rs148186069	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004639.3	-1	reviewed	p.G684	0.000	48	0%	28	28.6%	80	48.7%	-	-	-	NULL
GPANK1	7918	genome.wustl.edu	37	6	31632097	31632097	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033177.2	-1	reviewed	p.S53	0.000	93	0%	43	41.9%	27	33.3%	-	-	-	NULL
LY6G5B	58496	genome.wustl.edu	37	6	31639712	31639712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021221.2	+1	validated	p.T87A	0.047	532	0%	296	30.1%	16	43.7%	probably_damaging(0.959)	tolerated(0.17)	neutral(0.462)	NULL
LY6G6C	80740	genome.wustl.edu	37	6	31687905	31687905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025261.1	-1	validated	p.P43Q	0.071	175	0%	83	26.5%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	superfamily_Snake toxin-like
MSH5	4439	genome.wustl.edu	37	6	31727939	31727939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000498473	+1	known	p.G111S	0.997	193	0%	121	38%	9	55.5%	-	-	-	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
VARS	7407	genome.wustl.edu	37	6	31748674	31748674	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428445	-1	known	p.R215*	0.780	77	0%	18	33.3%	148	42.5%	-	-	-	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
VARS	7407	genome.wustl.edu	37	6	31750923	31750923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006295.2	-1	reviewed	p.R571Q	1.000	37	0%	22	40.9%	87	33.3%	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase
VARS	7407	genome.wustl.edu	37	6	31752422	31752422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006295.2	-1	reviewed	p.R473C	1.000	44	0%	30	43.3%	69	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase
C6orf48	50854	genome.wustl.edu	37	6	31805192	31805192	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040437.1	+1	validated	p.A29	0.000	311	0%	151	28.5%	328	39.3%	-	-	-	NULL
CFB	629	genome.wustl.edu	37	6	31914001	31914001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001710.5	+1	reviewed	p.M1I	0.856	236	0%	126	23.8%	5	0%	unknown(0)	-	-	NULL
SKIV2L	6499	genome.wustl.edu	37	6	31933737	31933737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006929.4	+1	reviewed	p.L717M	0.996	42	0%	12	41.7%	20	55%	possibly_damaging(0.49)	deleterious(0)	deleterious(0.608)	superfamily_SSF52540
TNXB	7148	genome.wustl.edu	37	6	32017906	32017906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.A3101V	0.002	138	0%	81	22.2%	5	0%	benign(0)	tolerated(0.98)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNXB	7148	genome.wustl.edu	37	6	32023696	32023696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.Y2800C	1.000	55	0%	36	36.1%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FKBPL	63943	genome.wustl.edu	37	6	32096570	32096570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022110.3	-1	reviewed	p.V330I	0.801	372	0%	271	14.8%	7	28.5%	benign(0)	tolerated(0.58)	neutral(0.005)	superfamily_SSF48452
NOTCH4	4855	genome.wustl.edu	37	6	32168682	32168682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004557.3	-1	reviewed	p.A1414V	0.213	51	0%	30	40%	1	0%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_NODP
TAP2	6891	genome.wustl.edu	37	6	32797232	32797232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018833.2	-1	reviewed	p.R626Q	0.007	106	0%	51	39.2%	19	26.3%	probably_damaging(1)	tolerated(0.37)	deleterious(0.519)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
TAP1	6890	genome.wustl.edu	37	6	32816451	32816451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000593.5	-1	reviewed	p.R575H	0.000	219	0%	109	22%	75	24%	benign(0.07)	tolerated(0.07)	neutral(0.324)	superfamily_SSF52540
HLA-DMA	3108	genome.wustl.edu	37	6	32917492	32917492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006120.3	-1	reviewed	p.S183I	0.974	224	0.4%	154	10.4%	96	3.1%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
BRD2	6046	genome.wustl.edu	37	6	32940705	32940705	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113182.1	+1	reviewed	e1+1	1.000	63	0%	43	30.2%	28	96.4%	-	-	-	-
BRD2	6046	genome.wustl.edu	37	6	32943284	32943284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113182.1	+1	reviewed	p.Y153H	1.000	296	0.3%	158	31%	185	30.8%	benign(0.161)	deleterious(0)	neutral(0.459)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
HLA-DOA	3111	genome.wustl.edu	37	6	32975360	32975360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002119.3	-1	reviewed	p.R114Q	0.113	147	0%	67	25.4%	9	0%	possibly_damaging(0.902)	tolerated(0.06)	deleterious(0.679)	superfamily_SSF48726
HLA-DOA	3111	genome.wustl.edu	37	6	32975910	32975910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002119.3	-1	reviewed	p.L71M	0.999	90	0%	43	18.6%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MHC_II_alpha,superfamily_MHC_I/II-like_Ag-recog
SLC39A7	7922	genome.wustl.edu	37	6	33169602	33169602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445037	+1	known	p.A70T	0.991	249	0%	142	14.8%	245	16.3%	unknown(0)	tolerated(0.1)	-	NULL
WDR46	9277	genome.wustl.edu	37	6	33247083	33247083	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005452.5	-1	validated	p.R601	0.266	103	0%	56	25%	60	30%	-	-	-	NULL
WDR46	9277	genome.wustl.edu	37	6	33248524	33248524	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005452.5	-1	validated	p.G452	0.896	54	0%	21	33.3%	35	40%	-	-	-	superfamily_WD40 repeat-like,HMMPfam_BING4CT
KIFC1	3833	genome.wustl.edu	37	6	33372737	33372737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002263.3	+1	validated	p.R289C	0.994	121	0%	61	36.1%	33	69.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF52540
KIFC1	3833	genome.wustl.edu	37	6	33373360	33373360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002263.3	+1	validated	p.E496	1.000	57	1.8%	32	25%	51	7.8%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
SYNGAP1	8831	genome.wustl.edu	37	6	33406195	33406195	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006772.2	+1	reviewed	e9-1	1.000	601	0%	302	30.1%	0	-	-	-	-	-
SYNGAP1	8831	genome.wustl.edu	37	6	33410791	33410791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006772.2	+1	reviewed	p.C821Y	1.000	267	0.4%	124	21.8%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
BAK1	578	genome.wustl.edu	37	6	33543594	33543594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001188.3	-1	reviewed	p.V61A	0.011	149	0%	85	28.2%	41	51.2%	benign(0.001)	tolerated(1)	-	superfamily_Bcl-2 inhibitors of programmed cell death
ITPR3	3710	genome.wustl.edu	37	6	33626489	33626489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.R138W	1.000	283	0%	135	34.1%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MIR,HMMPfam_Ins145_P3_rec,HMMSmart_MIR
ITPR3	3710	genome.wustl.edu	37	6	33630401	33630401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.R270C	1.000	65	0%	29	34.5%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR
ITPR3	3710	genome.wustl.edu	37	6	33644639	33644639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.L1126P	1.000	35	0%	23	21.7%	10	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ITPR3	3710	genome.wustl.edu	37	6	33654849	33654849	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.R2015*	1.000	111	0%	51	29.4%	18	11.1%	-	-	-	NULL
IP6K3	117283	genome.wustl.edu	37	6	33690701	33690701	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142883.1	-1	reviewed	p.P343	0.000	148	0%	81	25.9%	0	-	-	-	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
IP6K3	117283	genome.wustl.edu	37	6	33694611	33694611	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142883.1	-1	reviewed	p.N162	0.000	103	0%	40	30%	1	0%	-	-	-	HMMPfam_IPK,superfamily_SAICAR synthase-like
GRM4	2914	genome.wustl.edu	37	6	34003690	34003690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.R733W	1.000	92	1.1%	52	21.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_3
GRM4	2914	genome.wustl.edu	37	6	34003836	34003836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.G684D	1.000	127	0%	57	10.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_3
GRM4	2914	genome.wustl.edu	37	6	34004089	34004089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.A600T	0.966	46	0%	26	46.2%	0	-	benign(0.023)	tolerated(0.14)	neutral(0.251)	HMMPfam_7tm_3
SPDEF	25803	genome.wustl.edu	37	6	34511903	34511903	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012391.1	-1	provisional	p.G110	0.022	65	0%	29	27.6%	406	42.8%	-	-	-	superfamily_SAM_homology
UHRF1BP1	54887	genome.wustl.edu	37	6	34827168	34827168	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017754.3	+1	validated	p.K1012M	1.000	166	0.6%	153	26.8%	6	0%	possibly_damaging(0.491)	deleterious(0.03)	deleterious(0.528)	NULL
SCUBE3	222663	genome.wustl.edu	37	6	35200668	35200668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	p.I171V	1.000	581	0%	295	26.8%	0	-	probably_damaging(0.993)	tolerated(0.07)	deleterious(0.769)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
SCUBE3	222663	genome.wustl.edu	37	6	35209437	35209437	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	e11+1	1.000	271	0%	147	30.6%	0	-	-	-	-	-
SCUBE3	222663	genome.wustl.edu	37	6	35210097	35210097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152753.2	+1	provisional	p.G512C	1.000	185	0%	105	12.4%	1	0%	possibly_damaging(0.686)	deleterious(0)	deleterious(0.690)	NULL
FANCE	2178	genome.wustl.edu	37	6	35426083	35426083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.L327M	0.068	296	0%	150	12.7%	22	0%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
ARMC12	221481	genome.wustl.edu	37	6	35716393	35716393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145028.3	+1	predicted	p.R284W	1.000	329	0%	207	12.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_DUF634,superfamily_ARM-type_fold
C6orf222	389384	genome.wustl.edu	37	6	36294423	36294423	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010903.4	-1	validated	p.N300	0.000	352	0%	164	35.4%	0	-	-	-	-	NULL
C6orf222	389384	genome.wustl.edu	37	6	36297933	36297933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010903.4	-1	validated	p.G179C	0.166	212	0%	113	36.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SRSF3	6428	genome.wustl.edu	37	6	36566723	36566723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003017.4	+1	validated	p.D102Y	1.000	199	0%	141	17%	378	20.1%	unknown(0)	deleterious(0)	-	superfamily_RNA-binding domain RBD
CDKN1A	1026	genome.wustl.edu	37	6	36652083	36652083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000389.3	+1	reviewed	p.R69W	0.992	34	0%	22	50%	234	49.5%	benign(0.006)	tolerated(0.15)	neutral(0.241)	HMMPfam_CDI
TMEM217	221468	genome.wustl.edu	37	6	37186424	37186424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145316.3	-1	validated	p.R128H	1.000	950	0%	498	26.5%	0	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
MDGA1	266727	genome.wustl.edu	37	6	37622577	37622577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153487.3	-1	validated	p.T237	0.999	350	0.6%	174	27.6%	1	0%	-	-	-	superfamily_Immunoglobulin
DNAH8	1769	genome.wustl.edu	37	6	38690688	38690688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373278	+1	known	p.R35C	0.254	48	0%	22	27.3%	0	-	benign(0.19)	deleterious(0.03)	neutral(0.383)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38794124	38794124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.R1130H	1.000	452	0%	375	11.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH8	1769	genome.wustl.edu	37	6	38906751	38906751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.Q3781H	0.964	207	0%	147	34%	0	-	benign(0.054)	tolerated(0.32)	neutral(0.028)	NULL
KCNK5	8645	genome.wustl.edu	37	6	39159388	39159388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003740.3	-1	reviewed	p.R260W	1.000	128	0%	60	26.7%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81324
KCNK5	8645	genome.wustl.edu	37	6	39159505	39159505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003740.3	-1	reviewed	p.A221T	0.978	114	0%	58	22.4%	5	40%	benign(0.056)	tolerated(0.42)	neutral(0.018)	HMMPfam_Ion_trans_2,superfamily_SSF81324
LRFN2	57497	genome.wustl.edu	37	6	40400033	40400033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020737.1	-1	provisional	p.R274C	0.995	60	0%	29	13.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00082,superfamily_L domain-like
LRFN2	57497	genome.wustl.edu	37	6	40400647	40400647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020737.1	-1	provisional	p.R69H	1.000	51	0%	29	37.9%	0	-	possibly_damaging(0.513)	tolerated(0.08)	deleterious(0.472)	superfamily_L domain-like
UNC5CL	222643	genome.wustl.edu	37	6	41002617	41002617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173561.1	-1	provisional	p.R66M	0.000	405	0%	206	14.1%	0	-	possibly_damaging(0.809)	deleterious(0.01)	deleterious(0.710)	NULL
USP49	25862	genome.wustl.edu	37	6	41771645	41771645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018561.3	-1	provisional	p.V487A	0.949	276	0.4%	167	21%	1	0%	benign(0)	tolerated(0.99)	-	HMMPfam_UCH,superfamily_Cysteine proteinases
MED20	9477	genome.wustl.edu	37	6	41877201	41877201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004275.3	-1	validated	p.A77T	1.000	253	0%	116	25%	12	16.6%	benign(0.06)	deleterious(0.04)	neutral(0.353)	HMMPfam_TATA_RF
BYSL	705	genome.wustl.edu	37	6	41898472	41898472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004053.3	+1	reviewed	p.A224T	1.000	45	0%	23	26.1%	45	44.4%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_Bystin
GUCA1B	2979	genome.wustl.edu	37	6	42162517	42162517	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002098.5	-1	reviewed	p.G14	0.399	118	0%	67	28.4%	2	100%	-	-	-	NULL
TRERF1	55809	genome.wustl.edu	37	6	42236902	42236902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033502.2	-1	reviewed	p.L143M	1.000	469	0%	291	32.6%	3	66.6%	possibly_damaging(0.634)	deleterious(0)	deleterious(0.666)	NULL
CNPY3	10695	genome.wustl.edu	37	6	42902327	42902327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006586.3	+1	validated	p.Y89C	1.000	145	0%	92	29.3%	59	54.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLHDC3	116138	genome.wustl.edu	37	6	42985417	42985417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000244670	+1	known	p.S10Y	0.977	79	0%	43	30.2%	75	44%	unknown(0)	-	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43008397	43008397	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.N1298	1.000	133	0%	59	35.6%	12	41.6%	-	-	-	HMMPfam_Cullin,superfamily_Cullin_homology
CUL7	9820	genome.wustl.edu	37	6	43020440	43020440	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.R29	0.019	116	0%	57	26.3%	3	0%	-	-	-	NULL
CUL9	23113	genome.wustl.edu	37	6	43171267	43171267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.R1321Q	0.589	231	0%	83	21.7%	4	50%	benign(0.231)	deleterious(0)	neutral(0.468)	NULL
CUL9	23113	genome.wustl.edu	37	6	43173834	43173834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.R1628H	1.000	195	0%	91	40.7%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,superfamily_Cullin homology domain
CUL9	23113	genome.wustl.edu	37	6	43192057	43192057	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.W2476*	1.000	170	0%	87	39.1%	12	75%	-	-	-	NULL
C6orf108	10591	genome.wustl.edu	37	6	43193757	43193757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199184.1	-1	reviewed	p.K130N	0.556	96	0%	48	33.3%	9	22.2%	benign(0.164)	deleterious(0)	neutral(0.460)	HMMPfam_Nuc_deoxyrib_tr
TTBK1	84630	genome.wustl.edu	37	6	43251623	43251623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032538.1	+1	validated	p.G1049C	0.887	89	1.1%	39	30.8%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
ZNF318	24149	genome.wustl.edu	37	6	43307127	43307127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.R1537C	0.918	154	0%	98	26.5%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TJAP1	93643	genome.wustl.edu	37	6	43466803	43466803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080604.2	+1	reviewed	p.R22C	1.000	147	0%	71	31%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLH	5429	genome.wustl.edu	37	6	43550126	43550126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006502.2	+1	reviewed	p.R24W	1.000	216	0%	143	26.6%	12	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
POLH	5429	genome.wustl.edu	37	6	43565510	43565510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006502.2	+1	reviewed	p.L190I	1.000	147	0%	68	26.5%	23	52.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_IMS,superfamily_DNA/RNA polymerases
CAPN11	11131	genome.wustl.edu	37	6	44137063	44137063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007058.3	+1	reviewed	p.S45I	0.003	87	0%	43	18.6%	0	-	possibly_damaging(0.887)	tolerated(0.18)	neutral(0.403)	superfamily_SSF54001
CAPN11	11131	genome.wustl.edu	37	6	44144696	44144696	+	Missense_Mutation	SNP	C	C	T	rs185943934	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007058.3	+1	reviewed	p.R400C	0.999	390	0%	169	37.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
CAPN11	11131	genome.wustl.edu	37	6	44145080	44145080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007058.3	+1	reviewed	p.A447T	1.000	81	0%	45	20%	0	-	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
HSP90AB1	3326	genome.wustl.edu	37	6	44220860	44220860	+	Missense_Mutation	SNP	C	C	T	rs184003361	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.R604W	1.000	465	0.2%	223	22.4%	1694	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP90,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)
SLC35B2	347734	genome.wustl.edu	37	6	44222546	44222546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178148.2	-1	validated	p.A399V	1.000	222	0%	95	17.9%	60	50%	benign(0.144)	tolerated(0.51)	neutral(0.021)	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE
NFKBIE	4794	genome.wustl.edu	37	6	44228217	44228217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004556.2	-1	validated	p.L390F	1.000	120	0%	54	33.3%	26	38.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
TCTE1	202500	genome.wustl.edu	37	6	44255379	44255379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182539.3	-1	validated	p.R62C	1.000	93	0%	42	45.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDC5L	988	genome.wustl.edu	37	6	44390410	44390410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001253.2	+1	reviewed	p.L423P	1.000	408	0.2%	272	27.2%	51	47%	benign(0.308)	tolerated(0.3)	neutral(0.124)	NULL
RCAN2	10231	genome.wustl.edu	37	6	46214616	46214616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005822.2	-1	validated	p.A101D	1.000	158	0.6%	129	14.7%	4	0%	probably_damaging(0.973)	tolerated(0.38)	neutral(0.432)	HMMPfam_Calcipressin
SLC25A27	9481	genome.wustl.edu	37	6	46632563	46632563	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004277.3	+1	reviewed	p.R187*	1.000	168	0.6%	103	33%	1	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
TDRD6	221400	genome.wustl.edu	37	6	46659617	46659617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.F1251C	0.000	240	0%	113	25.7%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
MUT	4594	genome.wustl.edu	37	6	49407933	49407933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000255.3	-1	reviewed	p.G648C	1.000	345	0%	224	26.3%	61	47.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain
RHAG	6005	genome.wustl.edu	37	6	49578801	49578801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000324.2	-1	reviewed	p.G335S	1.000	191	0%	142	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt
RHAG	6005	genome.wustl.edu	37	6	49604472	49604472	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000324.2	-1	reviewed	p.V18	1.000	255	0%	116	25.9%	0	-	-	-	-	HMMPfam_Ammonium_transp
DEFB114	245928	genome.wustl.edu	37	6	49928011	49928011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037499.1	-1	provisional	p.M68I	0.000	120	0%	99	30.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51611650	51611650	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.S3289	0.012	199	0%	150	18%	0	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51613375	51613375	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.S3013	1.000	313	0%	204	29.9%	1	0%	-	-	-	HMMSmart_SM00710,superfamily_Pectin lyase-like
MCM3	4172	genome.wustl.edu	37	6	52138617	52138617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002388.3	-1	reviewed	p.P491H	1.000	263	0%	136	38.2%	118	58.4%	possibly_damaging(0.924)	deleterious(0.02)	deleterious(0.756)	HMMPfam_MCM,HMMSmart_MCM,superfamily_SSF52540
PAQR8	85315	genome.wustl.edu	37	6	52268183	52268183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133367.4	+1	validated	p.T58A	0.986	73	1.4%	37	24.3%	3	33.3%	benign(0.015)	tolerated(0.43)	neutral(0.014)	NULL
GSTA1	2938	genome.wustl.edu	37	6	52658982	52658982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145740.3	-1	reviewed	p.A119T	0.019	918	0%	564	28.2%	5	40%	benign(0.002)	tolerated(0.38)	neutral(0.018)	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
FBXO9	26268	genome.wustl.edu	37	6	52945854	52945854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012347.4	+1	reviewed	p.L176M	1.000	149	0%	110	28.2%	41	41.4%	possibly_damaging(0.753)	tolerated(0.11)	deleterious(0.548)	NULL
GCM1	8521	genome.wustl.edu	37	6	52998920	52998920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003643.3	-1	reviewed	p.K93T	1.000	112	0%	74	29.7%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_GCM,superfamily_GCM_motif
ELOVL5	60481	genome.wustl.edu	37	6	53139937	53139937	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021814.3	-1	provisional	p.S149	0.993	160	0%	72	29.2%	172	59.8%	-	-	-	HMMPfam_ELO
LRRC1	55227	genome.wustl.edu	37	6	53785495	53785495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018214.4	+1	validated	p.A451V	0.974	186	0.5%	114	33.3%	43	48.8%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
FAM83B	222584	genome.wustl.edu	37	6	54805207	54805207	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010872.1	+1	validated	p.R480*	0.946	314	0%	259	31.7%	7	28.5%	-	-	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54805754	54805754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010872.1	+1	validated	p.R662M	1.000	353	0%	300	27%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GFRAL	389400	genome.wustl.edu	37	6	55216247	55216247	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207410.2	+1	validated	p.C189	1.000	726	0.1%	582	32.6%	0	-	-	-	-	HMMPfam_GDNF,superfamily_SSF110035
HMGCLL1	54511	genome.wustl.edu	37	6	55360388	55360388	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019036.2	-1	validated	p.Y238	0.038	144	0.7%	88	31.8%	0	-	-	-	-	HMMPfam_HMGL-like,superfamily_Aldolase
BMP5	653	genome.wustl.edu	37	6	55739501	55739501	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021073.2	-1	reviewed	p.I55L	1.000	521	0%	410	28.3%	0	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_TGFb_propeptide
COL21A1	81578	genome.wustl.edu	37	6	55922544	55922544	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030820.3	-1	reviewed	p.Q929*	0.853	77	0%	65	12.3%	6	0%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56346879	56346879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.D4544G	1.000	104	0%	57	29.8%	7	0%	possibly_damaging(0.62)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56376192	56376192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.R3572C	1.000	53	0%	48	31.2%	3	0%	probably_damaging(1)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56476332	56476332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.Q1170H	0.985	158	0%	106	17%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56507549	56507549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.S13Y	1.000	212	0%	168	10.7%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
DST	667	genome.wustl.edu	37	6	56535537	56535537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.T161	0.919	176	0%	115	21.7%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
KIAA1586	57691	genome.wustl.edu	37	6	56918496	56918496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020931.2	+1	validated	p.S400Y	1.000	259	0%	151	15.9%	4	0%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	NULL
ZNF451	26036	genome.wustl.edu	37	6	57015533	57015533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.E875	1.000	444	0%	300	30%	7	57.1%	-	-	-	NULL
PHF3	23469	genome.wustl.edu	37	6	64394054	64394054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.S144I	1.000	498	0%	378	30.4%	8	37.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PHF3	23469	genome.wustl.edu	37	6	64395806	64395806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015153.2	+1	provisional	p.G728V	1.000	181	0%	125	28.8%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
BAI3	577	genome.wustl.edu	37	6	69653726	69653726	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.H345	1.000	346	0.3%	248	25.8%	0	-	-	-	-	superfamily_TSP-1 type 1 repeat
BAI3	577	genome.wustl.edu	37	6	69703841	69703841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.S639Y	1.000	454	0%	251	27.9%	0	-	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	NULL
BAI3	577	genome.wustl.edu	37	6	69944946	69944946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.P877H	1.000	501	0%	283	26.1%	0	-	probably_damaging(0.992)	tolerated(0.22)	deleterious(0.489)	HMMPfam_7tm_2
BAI3	577	genome.wustl.edu	37	6	70071307	70071307	+	Missense_Mutation	SNP	G	G	A	rs183570911	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.R1381H	1.000	366	0%	321	25.2%	0	-	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
LMBRD1	55788	genome.wustl.edu	37	6	70500286	70500286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018368.3	-1	reviewed	p.A50S	1.000	221	0%	124	27.4%	20	55%	benign(0.052)	tolerated(0.28)	neutral(0.035)	HMMPfam_LMBR1
COL19A1	1310	genome.wustl.edu	37	6	70672744	70672744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.K336N	1.000	143	0%	78	26.9%	0	-	unknown(0)	tolerated(0.16)	-	HMMPfam_Collagen
COL19A1	1310	genome.wustl.edu	37	6	70866102	70866102	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.K721	0.001	137	0%	115	34.8%	0	-	-	-	-	NULL
COL19A1	1310	genome.wustl.edu	37	6	70897784	70897784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.D954E	1.000	263	0%	164	29.9%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70978515	70978515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001851.4	-1	reviewed	p.G427C	1.000	81	0%	48	14.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	71011743	71011743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001851.4	-1	reviewed	p.L17M	0.971	67	0%	57	10.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71234984	71234984	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.R537*	0.998	412	0%	253	16.2%	2	0%	-	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	72806711	72806711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.A102V	1.000	68	0%	51	31.4%	0	-	benign(0.223)	tolerated(0.06)	neutral(0.345)	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	72806763	72806763	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.C119*	0.940	72	0%	47	19.1%	0	-	-	-	-	superfamily_FYVE/PHD zinc finger
RIMS1	22999	genome.wustl.edu	37	6	73001734	73001734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014989.4	+1	reviewed	p.G1279S	0.966	12	0.000	8	0.500	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
DDX43	55510	genome.wustl.edu	37	6	74123382	74123382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018665.2	+1	reviewed	p.A457D	1.000	198	0%	123	26.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_DEXDc,superfamily_SSF52540
SLC17A5	26503	genome.wustl.edu	37	6	74320172	74320172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012434.4	-1	reviewed	p.G404C	1.000	495	0.2%	336	29.2%	42	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
COL12A1	1303	genome.wustl.edu	37	6	75797371	75797371	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.R3035*	0.988	221	0%	107	28%	36	2.7%	-	-	-	HMMPfam_Collagen
COL12A1	1303	genome.wustl.edu	37	6	75823336	75823336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.V2608F	1.000	277	0%	257	12.8%	22	4.5%	possibly_damaging(0.928)	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL12A1	1303	genome.wustl.edu	37	6	75840677	75840677	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.T1986	0.003	351	0%	289	13.1%	14	28.5%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75855908	75855908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.M1490I	1.000	184	0%	112	24.1%	11	18.1%	possibly_damaging(0.931)	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
COL12A1	1303	genome.wustl.edu	37	6	75898213	75898213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.A288T	1.000	463	0%	314	14%	0	-	probably_damaging(0.995)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TMEM30A	55754	genome.wustl.edu	37	6	75969182	75969182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018247.3	-1	validated	p.G189D	0.867	226	0%	140	23.6%	119	32.7%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_CDC50
FILIP1	27145	genome.wustl.edu	37	6	76022797	76022797	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.D917	0.870	481	0%	298	10.4%	2	0%	-	-	-	NULL
FILIP1	27145	genome.wustl.edu	37	6	76023161	76023161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.V796A	1.000	724	0.1%	483	30%	3	100%	benign(0.036)	tolerated(0.66)	neutral(0.005)	NULL
FILIP1	27145	genome.wustl.edu	37	6	76024300	76024300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.H416	1.000	750	0.1%	509	12.4%	2	0%	-	-	-	HMMPfam_CortBP2
IMPG1	3617	genome.wustl.edu	37	6	76640702	76640702	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001563.2	-1	provisional	p.C737	0.631	151	0%	72	31.9%	0	-	-	-	-	NULL
HTR1B	3351	genome.wustl.edu	37	6	78172856	78172856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000863.1	-1	provisional	p.A89T	1.000	72	0%	38	26.3%	0	-	probably_damaging(0.983)	tolerated(0.15)	deleterious(0.670)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LCA5	167691	genome.wustl.edu	37	6	80197184	80197184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122769.2	-1	reviewed	p.S544N	0.006	341	0%	247	26.7%	1	100%	benign(0.021)	tolerated(0.06)	neutral(0.324)	NULL
ELOVL4	6785	genome.wustl.edu	37	6	80629239	80629239	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022726.3	-1	reviewed	p.S189	0.107	181	0%	136	28.7%	0	-	-	-	-	HMMPfam_ELO
ELOVL4	6785	genome.wustl.edu	37	6	80631354	80631354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022726.3	-1	reviewed	p.A177T	0.994	393	0%	264	12.9%	0	-	benign(0.358)	deleterious(0)	deleterious(0.558)	HMMPfam_ELO
TTK	7272	genome.wustl.edu	37	6	80715832	80715832	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509313	+1	known	p.L50	0.000	96	0%	55	21.8%	0	-	-	-	-	NULL
TTK	7272	genome.wustl.edu	37	6	80745011	80745011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003318.4	+1	reviewed	p.V601I	1.000	242	0%	159	22.6%	13	53.8%	possibly_damaging(0.915)	tolerated(0.11)	deleterious(0.638)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TTK	7272	genome.wustl.edu	37	6	80745068	80745068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003318.4	+1	reviewed	p.D620N	0.971	222	0%	156	28.8%	17	35.2%	benign(0)	tolerated(1)	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
BCKDHB	594	genome.wustl.edu	37	6	80881055	80881055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000056.3	+1	reviewed	p.E230D	1.000	155	0%	129	26.4%	18	38.8%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
FAM46A	55603	genome.wustl.edu	37	6	82461384	82461384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017633.2	-1	validated	p.D159N	1.000	103	0%	53	43.4%	2	50%	benign(0.043)	deleterious(0.02)	neutral(0.386)	HMMPfam_DUF1693
IBTK	25998	genome.wustl.edu	37	6	82883146	82883146	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.T1245	0.000	290	0%	201	13.9%	22	27.2%	-	-	-	NULL
IBTK	25998	genome.wustl.edu	37	6	82906075	82906075	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.G1038	0.998	346	0%	234	23.5%	19	68.4%	-	-	-	NULL
IBTK	25998	genome.wustl.edu	37	6	82949934	82949934	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015525.2	-1	reviewed	p.L90	1.000	208	0%	134	23.9%	3	66.6%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
UBE3D	90025	genome.wustl.edu	37	6	83748144	83748144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198920.1	-1	provisional	p.V220M	0.001	225	0.4%	94	27.7%	5	100%	benign(0.005)	tolerated(0.19)	neutral(0.050)	HMMPfam_DUF2351
DOPEY1	23033	genome.wustl.edu	37	6	83810482	83810482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015018.2	+1	validated	p.R66H	1.000	981	0.1%	587	26.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dopey_N
PGM3	5238	genome.wustl.edu	37	6	83900663	83900663	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015599.1	-1	provisional	p.Y23	1.000	212	0%	135	23%	37	59.4%	-	-	-	NULL
CYB5R4	51167	genome.wustl.edu	37	6	84573929	84573929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.W37C	1.000	230	0%	156	25%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYB5R4	51167	genome.wustl.edu	37	6	84646027	84646027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016230.3	+1	validated	p.Y347C	0.871	157	0%	115	28.7%	14	50%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_FAD_binding_6,superfamily_Riboflavin_synthase_like_b-brl
MRAP2	112609	genome.wustl.edu	37	6	84765156	84765156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138409.2	+1	validated	p.A40V	1.000	272	0.4%	177	32.2%	1	0%	benign(0.236)	deleterious(0.02)	neutral(0.407)	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84865054	84865054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	p.S986N	1.000	377	0%	300	28.3%	7	14.2%	probably_damaging(0.994)	tolerated(0.31)	deleterious(0.479)	NULL
SNX14	57231	genome.wustl.edu	37	6	86224335	86224335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153816.3	-1	reviewed	p.L761M	1.000	317	0%	239	15.9%	70	34.2%	benign(0.323)	tolerated(0.07)	neutral(0.420)	NULL
SNX14	57231	genome.wustl.edu	37	6	86251761	86251761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153816.3	-1	reviewed	p.Y464H	1.000	75	0%	43	27.9%	46	36.9%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
LOC100286905	100286905	genome.wustl.edu	37	6	87925694	87925694	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342650.1	-1	model	e2-1	1.000	274	0%	170	30%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
ZNF292	23036	genome.wustl.edu	37	6	87965842	87965842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.S832N	0.001	209	0%	151	26.5%	6	33.3%	benign(0)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF292	23036	genome.wustl.edu	37	6	87966547	87966547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.T1067I	1.000	414	0%	290	31%	5	60%	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87969398	87969398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.K2017N	0.000	67	0%	48	20.8%	17	52.9%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87971050	87971050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.A2568D	1.000	274	0%	182	15.4%	30	43.3%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
GJB7	375519	genome.wustl.edu	37	6	87994456	87994456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198568.2	-1	validated	p.G59S	1.000	734	0.1%	416	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin,HMMSmart_CNX
C6orf165	154313	genome.wustl.edu	37	6	88123610	88123610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031743.2	+1	validated	p.T92M	1.000	139	0%	61	36.1%	3	66.6%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
C6orf165	154313	genome.wustl.edu	37	6	88138501	88138501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031743.2	+1	validated	p.A373V	0.004	226	0%	157	29.9%	6	0%	benign(0)	tolerated(1)	-	NULL
RARS2	57038	genome.wustl.edu	37	6	88255353	88255353	+	Silent	SNP	G	G	A	rs140354649	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451155	-1	known	p.A200V	0.898	782	0%	518	23.2%	45	53.3%	-	-	-	HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase
CNR1	1268	genome.wustl.edu	37	6	88854904	88854904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033181.3	-1	reviewed	p.T25M	1.000	251	0%	134	29.9%	0	-	benign(0.016)	tolerated(0.06)	neutral(0.323)	NULL
PNRC1	10957	genome.wustl.edu	37	6	89793509	89793509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006813.2	+1	validated	p.A193V	0.435	164	0%	82	20.7%	51	37.2%	benign(0.012)	tolerated(0.13)	neutral(0.253)	NULL
PM20D2	135293	genome.wustl.edu	37	6	89871872	89871872	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010853.1	+1	validated	p.L401	0.997	408	0%	248	32.7%	15	33.3%	-	-	-	superfamily_Zn-dependent exopeptidases
GABRR1	2569	genome.wustl.edu	37	6	89890125	89890125	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002042.3	-1	reviewed	p.V344	1.000	212	0%	109	33%	1	0%	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
UBE2J1	51465	genome.wustl.edu	37	6	90053414	90053414	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016021.2	-1	reviewed	p.A31	0.658	202	0.5%	127	32.3%	50	38%	-	-	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
MDN1	23195	genome.wustl.edu	37	6	90384174	90384174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.I4299T	0.986	61	0%	39	15.4%	11	63.6%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
MDN1	23195	genome.wustl.edu	37	6	90421758	90421758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.L2550F	1.000	1372	0.1%	974	26.5%	2	0%	probably_damaging(0.983)	tolerated(0.17)	deleterious(0.488)	NULL
MDN1	23195	genome.wustl.edu	37	6	90422344	90422344	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.I2460	1.000	934	0.1%	594	26.4%	1	100%	-	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90433284	90433284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.F1909L	1.000	194	0.5%	100	11%	0	-	probably_damaging(0.987)	tolerated(0.05)	deleterious(0.782)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GJA10	84694	genome.wustl.edu	37	6	90604651	90604651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032602.1	+1	validated	p.R155H	1.000	616	0.2%	349	15.5%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
BACH2	60468	genome.wustl.edu	37	6	90642470	90642470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021813.2	-1	validated	p.R728Q	1.000	96	0%	51	11.8%	0	-	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	NULL
EPHA7	2045	genome.wustl.edu	37	6	93955045	93955045	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.S951	0.997	155	0.6%	94	20.2%	9	11.1%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
EPHA7	2045	genome.wustl.edu	37	6	93967892	93967892	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.F679I	1.000	173	0%	119	27.7%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA7	2045	genome.wustl.edu	37	6	93973600	93973600	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.G592	0.837	203	0%	176	19.3%	19	52.6%	-	-	-	NULL
EPHA7	2045	genome.wustl.edu	37	6	94120851	94120851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004440.3	-1	reviewed	p.P67L	1.000	213	0%	144	20.1%	13	38.4%	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
MANEA	79694	genome.wustl.edu	37	6	96053888	96053888	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024641.2	+1	validated	p.G332	1.000	351	0%	180	30.6%	15	46.6%	-	-	-	NULL
FHL5	9457	genome.wustl.edu	37	6	97058478	97058478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020482.4	+1	reviewed	p.D179N	1.000	357	0.3%	230	35.7%	0	-	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
MMS22L	253714	genome.wustl.edu	37	6	97711233	97711233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.R307K	1.000	325	0%	172	26.7%	3	33.3%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97715765	97715765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.L271I	0.985	174	0%	110	32.7%	4	50%	benign(0.006)	tolerated(0.48)	neutral(0.011)	NULL
COQ3	51805	genome.wustl.edu	37	6	99823892	99823892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017421.3	-1	validated	p.A218V	0.997	364	0%	277	25.3%	9	77.7%	benign(0.002)	tolerated(0.73)	neutral(0.002)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ASCC3	10973	genome.wustl.edu	37	6	100957933	100957933	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.D2112	1.000	1177	0%	680	27.1%	44	25%	-	-	-	HMMPfam_Sec63,HMMSmart_SEC63
ASCC3	10973	genome.wustl.edu	37	6	101073174	101073174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.I1560R	1.000	179	0%	118	41.5%	37	43.2%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	superfamily_SSF52540
ASCC3	10973	genome.wustl.edu	37	6	101247440	101247440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.A379V	1.000	136	0%	105	25.7%	4	25%	benign(0.271)	tolerated(0.09)	neutral(0.326)	superfamily_SSF52540
GRIK2	2898	genome.wustl.edu	37	6	102247632	102247632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021956.4	+1	reviewed	p.R354H	1.000	244	0%	151	31.8%	1	0%	benign(0.013)	tolerated(0.12)	neutral(0.261)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRIK2	2898	genome.wustl.edu	37	6	102376334	102376334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021956.4	+1	reviewed	p.G638C	1.000	196	0%	113	21.2%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
PREP	5550	genome.wustl.edu	37	6	105800936	105800936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002726.3	-1	reviewed	p.R245H	1.000	384	0%	254	28%	36	47.2%	possibly_damaging(0.92)	tolerated(0.11)	deleterious(0.643)	HMMPfam_Peptidase_S9_N,superfamily_Peptidase_S9A_N
PRDM1	639	genome.wustl.edu	37	6	106553146	106553146	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001198.3	+1	reviewed	p.R371	0.920	202	0%	109	22.9%	8	0%	-	-	-	NULL
AIM1	202	genome.wustl.edu	37	6	106975249	106975249	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.L1086	0.814	410	0%	284	31.3%	6	50%	-	-	-	HMMSmart_XTALbg,superfamily_G_crystallin_SF
AIM1	202	genome.wustl.edu	37	6	106991388	106991388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.M1244T	0.000	413	0%	243	23.9%	7	57.1%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
QRSL1	55278	genome.wustl.edu	37	6	107100261	107100261	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018292.4	+1	validated	e6+2	1.000	285	0%	149	28.9%	0	-	-	-	-	-
SOBP	55084	genome.wustl.edu	37	6	107827509	107827509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018013.3	+1	validated	p.T100I	1.000	451	0%	257	31.1%	2	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
OSTM1	28962	genome.wustl.edu	37	6	108385427	108385427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014028.3	-1	reviewed	p.E160G	0.996	150	0%	103	28.2%	18	33.3%	benign(0.291)	tolerated(0.09)	neutral(0.386)	HMMPfam_OSTMP1
SNX3	8724	genome.wustl.edu	37	6	108533357	108533357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003795.4	-1	reviewed	p.A162V	1.000	61	0%	40	20%	171	14.6%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
SNX3	8724	genome.wustl.edu	37	6	108544180	108544180	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003795.4	-1	reviewed	p.R78*	0.531	110	0%	63	36.5%	134	15.6%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CEP57L1	285753	genome.wustl.edu	37	6	109471385	109471385	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083535.1	+1	validated	p.Y135	1.000	380	0%	288	27.8%	15	60%	-	-	-	HMMPfam_DUF1167
MICAL1	64780	genome.wustl.edu	37	6	109765995	109765995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022765.3	-1	validated	p.Q996H	0.864	89	0%	31	25.8%	17	11.7%	benign(0.293)	deleterious(0.01)	deleterious(0.496)	NULL
LOC100287481	100287481	genome.wustl.edu	37	6	109787007	109787007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342664.1	+1	model	p.S63R	0.001	177	0%	124	24.2%	8	12.5%	-	-	-	NULL
ZBTB24	9841	genome.wustl.edu	37	6	109787240	109787240	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014797.2	-1	validated	p.H636	0.903	295	0.3%	169	29.6%	15	40%	-	-	-	NULL
FIG4	9896	genome.wustl.edu	37	6	110112621	110112621	+	Silent	SNP	G	G	A	rs181012139	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014845.5	+1	reviewed	p.T741	0.000	156	0%	72	26.4%	31	35.4%	-	-	-	NULL
RPF2	84154	genome.wustl.edu	37	6	111346616	111346616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032194.1	+1	validated	p.K251T	1.000	249	0.4%	159	17.6%	52	23%	benign(0.074)	tolerated(0.07)	neutral(0.324)	NULL
REV3L	5980	genome.wustl.edu	37	6	111688745	111688745	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.T2082	0.439	879	0%	560	14.8%	30	33.3%	-	-	-	superfamily_Ribonuclease H-like
REV3L	5980	genome.wustl.edu	37	6	111695324	111695324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.D1412Y	0.921	510	0.2%	310	25.2%	11	36.3%	possibly_damaging(0.688)	deleterious(0)	deleterious(0.691)	superfamily_Ribonuclease H-like
FYN	2534	genome.wustl.edu	37	6	112041008	112041008	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002037.3	-1	reviewed	p.G83*	1.000	209	0%	126	32.5%	5	0%	-	-	-	superfamily_SH3-domain
LAMA4	3910	genome.wustl.edu	37	6	112463373	112463373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.P872Q	0.656	224	0%	101	12.9%	6	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
COL10A1	1300	genome.wustl.edu	37	6	116442906	116442906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000493.3	-1	reviewed	p.P125S	0.994	82	0%	36	22.2%	0	-	unknown(0)	tolerated(0.64)	-	HMMPfam_Collagen
NT5DC1	221294	genome.wustl.edu	37	6	116560210	116560210	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152729.2	+1	reviewed	p.S392	0.040	180	0%	122	31.1%	29	41.3%	-	-	-	HMMPfam_5_nucleotid
DSE	29940	genome.wustl.edu	37	6	116720638	116720638	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.V75	1.000	156	0%	65	33.8%	14	21.4%	-	-	-	NULL
DSE	29940	genome.wustl.edu	37	6	116758416	116758416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080976.1	+1	reviewed	p.L929I	1.000	191	0%	132	10.6%	12	8.3%	benign(0.403)	tolerated(0.08)	neutral(0.429)	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116938400	116938400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010892.2	+1	reviewed	p.S205N	0.990	226	0%	133	23.3%	1	100%	benign(0.011)	tolerated(0.16)	neutral(0.060)	NULL
RSPH4A	345895	genome.wustl.edu	37	6	116950802	116950802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010892.2	+1	reviewed	p.D579N	1.000	620	0%	394	28.9%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Radial_spoke
GPRC6A	222545	genome.wustl.edu	37	6	117113379	117113379	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148963.2	-1	validated	p.F903V	0.000	601	0%	421	29.5%	0	-	benign(0.059)	tolerated(0.19)	neutral(0.054)	NULL
RFX6	222546	genome.wustl.edu	37	6	117252580	117252580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173560.2	+1	validated	p.D900N	1.000	294	0%	211	27%	0	-	benign(0.086)	tolerated(0.09)	neutral(0.303)	NULL
VGLL2	245806	genome.wustl.edu	37	6	117586968	117586968	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182645.2	+1	provisional	p.P14	0.999	49	0%	31	35.5%	0	-	-	-	-	NULL
ROS1	6098	genome.wustl.edu	37	6	117683785	117683785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.R1121I	0.127	172	0%	102	26.5%	1	0%	benign(0.014)	tolerated(0.08)	neutral(0.300)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FAM184A	79632	genome.wustl.edu	37	6	119324078	119324078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024581.4	-1	validated	p.D692N	1.000	482	0%	328	10.7%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119341237	119341237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024581.4	-1	validated	p.R413I	1.000	329	0%	142	25.4%	2	50%	possibly_damaging(0.906)	deleterious(0.02)	deleterious(0.742)	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119510928	119510928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005907.2	-1	reviewed	p.A483T	1.000	206	0%	108	14.8%	12	25%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
GJA1	2697	genome.wustl.edu	37	6	121768256	121768256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000165.3	+1	reviewed	p.P88L	1.000	184	0%	117	23.9%	90	28.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin
SERINC1	57515	genome.wustl.edu	37	6	122775343	122775343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020755.2	-1	provisional	p.A135V	1.000	192	0%	118	22%	93	51.6%	benign(0.08)	deleterious(0)	neutral(0.450)	HMMPfam_Serinc
CLVS2	134829	genome.wustl.edu	37	6	123377088	123377088	+	Silent	SNP	C	C	T	rs147426485	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010852.2	+1	provisional	p.D271	0.996	616	0%	386	35%	0	-	-	-	-	superfamily_CRAL/TRIO domain
TPD52L1	7164	genome.wustl.edu	37	6	125550387	125550387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003287.2	+1	reviewed	p.W87R	1.000	192	0%	172	27.3%	103	51.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TPD52
HEY2	23493	genome.wustl.edu	37	6	126080799	126080799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012259.2	+1	reviewed	p.L289F	1.000	127	0%	93	31.2%	23	26%	benign(0.013)	tolerated(0.25)	neutral(0.037)	NULL
NCOA7	135112	genome.wustl.edu	37	6	126210870	126210870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.D557G	1.000	417	0%	288	31.6%	1	0%	possibly_damaging(0.692)	deleterious(0.01)	deleterious(0.653)	NULL
TRMT11	60487	genome.wustl.edu	37	6	126317187	126317187	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031712.2	+1	validated	e3+1	1.000	206	0%	148	23.6%	0	-	-	-	-	-
RNF146	81847	genome.wustl.edu	37	6	127608246	127608246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030963.2	+1	provisional	p.R162H	1.000	301	0.3%	266	22.6%	25	28%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_WWE,HMMSmart_WWE
KIAA0408	9729	genome.wustl.edu	37	6	127775019	127775019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014702.4	-1	validated	p.W36C	1.000	358	0%	279	23.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SOGA3	387104	genome.wustl.edu	37	6	127796906	127796906	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012279.2	-1	validated	p.S755	1.000	17	0%	11	45.5%	0	-	-	-	-	NULL
SOGA3	387104	genome.wustl.edu	37	6	127797028	127797028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012279.2	-1	validated	p.L715F	1.000	45	0%	20	40%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
THEMIS	387357	genome.wustl.edu	37	6	128134518	128134518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010923.2	-1	reviewed	p.A423D	0.007	405	0.2%	263	30%	1	0%	benign(0.002)	tolerated(0.62)	neutral(0.004)	NULL
PTPRK	5796	genome.wustl.edu	37	6	128294275	128294275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135648.1	-1	validated	p.F1393L	1.000	179	0%	124	27.4%	17	64.7%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPRK	5796	genome.wustl.edu	37	6	128320022	128320022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135648.1	-1	validated	p.S841Y	1.000	167	0%	130	25.4%	19	36.8%	possibly_damaging(0.757)	deleterious(0.01)	deleterious(0.685)	NULL
EPB41L2	2037	genome.wustl.edu	37	6	131190997	131190997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001431.3	-1	validated	p.Q771H	1.000	627	0.5%	341	27.3%	34	35.2%	possibly_damaging(0.909)	deleterious(0.04)	deleterious(0.711)	NULL
ENPP3	5169	genome.wustl.edu	37	6	131971171	131971171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005021.3	+1	reviewed	p.S53R	1.000	206	0%	188	33.5%	60	66.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Somatomedin_B,HMMSmart_SO,superfamily_SSF90188
ENPP3	5169	genome.wustl.edu	37	6	132039863	132039863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005021.3	+1	reviewed	p.E488D	0.607	238	0%	106	23.6%	73	24.6%	benign(0.018)	tolerated(0.61)	neutral(0.005)	superfamily_Alkaline_phosphatase_core
ENPP1	5167	genome.wustl.edu	37	6	132196953	132196953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006208.2	+1	reviewed	p.G558D	0.004	136	0%	93	19.4%	8	25%	benign(0.039)	tolerated(0.47)	neutral(0.013)	superfamily_Alkaline_phosphatase_core
ENPP1	5167	genome.wustl.edu	37	6	132206137	132206137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006208.2	+1	reviewed	p.V793D	0.999	182	0.5%	135	25.9%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_NUC,superfamily_SSF54060
LOC100131774	100131774	genome.wustl.edu	37	6	132270488	132270488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717693.2	+1	model	p.G135C	1.000	175	0%	77	40.3%	114	7%	-	-	-	NULL
TAAR9	134860	genome.wustl.edu	37	6	132859636	132859636	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175057.3	+1	reviewed	p.L70	1.000	258	0%	149	30.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TAAR5	9038	genome.wustl.edu	37	6	132909837	132909837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003967.2	-1	validated	p.R330H	0.000	140	0%	132	24.2%	0	-	benign(0.389)	tolerated(0.08)	neutral(0.424)	superfamily_SSF81321
TAAR2	9287	genome.wustl.edu	37	6	132938828	132938828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033080.1	-1	validated	p.A173S	0.061	336	0%	277	25.3%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VNN1	8876	genome.wustl.edu	37	6	133004445	133004445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004666.2	-1	reviewed	p.R459H	0.990	224	0%	154	20.8%	0	-	possibly_damaging(0.599)	tolerated(0.08)	deleterious(0.507)	NULL
SLC18B1	116843	genome.wustl.edu	37	6	133095408	133095408	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052831.2	-1	validated	p.A314	0.000	444	0%	282	29.8%	42	40.4%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC18B1	116843	genome.wustl.edu	37	6	133108600	133108600	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052831.2	-1	validated	p.A158	0.994	437	0%	228	25.4%	32	37.5%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SNORA33	594839	genome.wustl.edu	37	6	133138447	133138447	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002436.1	+1	provisional	NULL	0.501	247	0%	144	22.9%	8	12.5%	-	-	-	-
SGK1	6446	genome.wustl.edu	37	6	134492179	134492179	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143676.1	-1	reviewed	p.L435	0.576	155	0.6%	78	29.5%	70	28.5%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
AHI1	54806	genome.wustl.edu	37	6	135777059	135777059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134830.1	-1	reviewed	p.R386L	0.878	34	0%	27	29.6%	13	30.7%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	superfamily_WD40 repeat-like
AHI1	54806	genome.wustl.edu	37	6	135787210	135787210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134830.1	-1	reviewed	p.G164D	0.015	394	0%	257	30%	2	50%	benign(0.018)	tolerated(0.93)	neutral(0.001)	superfamily_WD40 repeat-like
MAP7	9053	genome.wustl.edu	37	6	136667062	136667062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003980.3	-1	reviewed	p.A724V	1.000	162	0%	79	13.9%	55	21.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAP7	9053	genome.wustl.edu	37	6	136710517	136710517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003980.3	-1	reviewed	p.R128Q	1.000	359	0%	236	23.3%	57	47.3%	unknown(0)	tolerated(0.46)	-	NULL
MAP3K5	4217	genome.wustl.edu	37	6	136944051	136944051	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005923.3	-1	reviewed	p.Y695	0.765	523	0%	290	34.1%	8	37.5%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PEX7	5191	genome.wustl.edu	37	6	137147487	137147487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000288.3	+1	reviewed	p.V73	1.000	157	0%	115	20.9%	25	36%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
IL20RA	53832	genome.wustl.edu	37	6	137322749	137322749	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014432.2	-1	reviewed	p.T536	0.973	463	0%	278	32.4%	42	64.2%	-	-	-	NULL
TNFAIP3	7128	genome.wustl.edu	37	6	138196093	138196093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006290.2	+1	reviewed	p.R136H	1.000	179	0%	93	31.2%	16	6.2%	probably_damaging(0.982)	tolerated(0.21)	deleterious(0.470)	HMMPfam_OTU
TNFAIP3	7128	genome.wustl.edu	37	6	138197171	138197171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006290.2	+1	reviewed	p.A225T	0.937	205	0%	111	34.2%	10	30%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMPfam_OTU
PERP	64065	genome.wustl.edu	37	6	138417551	138417551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022121.4	-1	validated	p.L99I	1.000	169	0%	93	26.9%	314	36.9%	possibly_damaging(0.791)	tolerated(0.22)	neutral(0.338)	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138611026	138611026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.V990I	1.000	65	0%	24	20.8%	4	50%	probably_damaging(0.987)	tolerated(0.08)	deleterious(0.736)	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138656065	138656065	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.E2028*	1.000	46	0%	21	19%	3	66.6%	-	-	-	NULL
HECA	51696	genome.wustl.edu	37	6	139488083	139488083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016217.2	+1	reviewed	p.A312T	0.759	107	0%	75	37.3%	6	16.6%	benign(0.323)	deleterious(0.02)	deleterious(0.484)	NULL
TXLNB	167838	genome.wustl.edu	37	6	139609998	139609998	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153235.3	-1	validated	p.R13	0.000	205	0%	141	24.8%	0	-	-	-	-	NULL
GPR126	57211	genome.wustl.edu	37	6	142688973	142688973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198569.2	+1	reviewed	p.A124V	0.972	203	0.5%	110	22.7%	3	33.3%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
HIVEP2	3097	genome.wustl.edu	37	6	143091558	143091558	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.R1440*	1.000	86	1.2%	37	13.5%	6	16.6%	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143092153	143092153	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.S1241	0.999	155	0%	94	35.1%	3	33.3%	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143093055	143093055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.R941C	1.000	85	0%	51	33.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLAGL1	5325	genome.wustl.edu	37	6	144262861	144262861	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080951.1	-1	reviewed	p.E364	0.948	213	0%	151	20.5%	24	0%	-	-	-	NULL
PLAGL1	5325	genome.wustl.edu	37	6	144263557	144263557	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080951.1	-1	reviewed	p.T132	0.000	203	0%	131	28.2%	13	76.9%	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SF3B5	83443	genome.wustl.edu	37	6	144416513	144416513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031287.2	-1	validated	p.C41Y	1.000	94	0%	50	18%	256	43.3%	benign(0.045)	deleterious(0)	neutral(0.447)	HMMPfam_SF3b10
UTRN	7402	genome.wustl.edu	37	6	144814581	144814581	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.L1528	1.000	160	0%	89	29.2%	3	0%	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
UTRN	7402	genome.wustl.edu	37	6	144852304	144852304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.S2008I	0.992	108	0%	73	20.5%	2	50%	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
FBXO30	84085	genome.wustl.edu	37	6	146127328	146127328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032145.4	-1	reviewed	p.A72T	0.998	560	0%	358	27.7%	7	57.1%	benign(0.001)	tolerated(0.5)	neutral(0.010)	superfamily_Traf_like
SHPRH	257218	genome.wustl.edu	37	6	146214414	146214414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.P1608L	1.000	175	0%	154	27.9%	17	58.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
SHPRH	257218	genome.wustl.edu	37	6	146262773	146262773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.C826R	1.000	169	0%	129	22.5%	7	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
STXBP5	134957	genome.wustl.edu	37	6	147631292	147631292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127715.1	+1	reviewed	p.M330I	1.000	251	0.4%	213	23%	6	50%	benign(0.218)	tolerated(0.12)	neutral(0.282)	superfamily_WD40 repeat-like,HMMPfam_LLGL
STXBP5	134957	genome.wustl.edu	37	6	147684754	147684754	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127715.1	+1	reviewed	p.S943	0.009	263	0.8%	198	23.7%	25	68%	-	-	-	NULL
STXBP5	134957	genome.wustl.edu	37	6	147685189	147685189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127715.1	+1	reviewed	p.M990V	0.998	525	0%	374	24.9%	31	41.9%	possibly_damaging(0.76)	tolerated(0.37)	neutral(0.300)	NULL
SASH1	23328	genome.wustl.edu	37	6	148865653	148865653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015278.3	+1	validated	p.A1016V	0.602	85	0%	32	37.5%	13	30.7%	benign(0.209)	deleterious(0.02)	neutral(0.404)	NULL
UST	10090	genome.wustl.edu	37	6	149342551	149342551	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005715.2	+1	validated	p.L291	1.000	209	0%	132	27.3%	4	50%	-	-	-	HMMPfam_HS2ST
ZC3H12D	340152	genome.wustl.edu	37	6	149777980	149777980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207360.2	-1	validated	p.R168C	1.000	20	0%	15	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PPIL4	85313	genome.wustl.edu	37	6	149846299	149846299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139126.2	-1	reviewed	p.A284T	1.000	220	0%	136	21.3%	35	37.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PPIL4	85313	genome.wustl.edu	37	6	149862566	149862566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139126.2	-1	reviewed	p.R47K	1.000	240	0%	155	9.7%	17	11.7%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
KATNA1	11104	genome.wustl.edu	37	6	149918308	149918308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007044.2	-1	reviewed	p.L390I	1.000	198	0%	99	28.3%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCMT1	5110	genome.wustl.edu	37	6	150092373	150092373	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005389.2	+1	validated	p.N44I	1.000	153	0%	83	33.7%	166	44.5%	benign(0.395)	tolerated(0.1)	neutral(0.413)	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ULBP2	80328	genome.wustl.edu	37	6	150267743	150267743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025217.2	+1	provisional	p.E195D	0.000	407	0.2%	209	29.2%	7	57.1%	benign(0.01)	tolerated(0.34)	neutral(0.024)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
ULBP1	80329	genome.wustl.edu	37	6	150289945	150289945	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025218.2	+1	provisional	p.D96	0.000	179	0%	88	23.9%	1	0%	-	-	-	superfamily_MHC antigen-recognition domain
IYD	389434	genome.wustl.edu	37	6	150715384	150715384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203395.2	+1	reviewed	p.A227D	1.000	177	0%	94	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nitroreductase,superfamily_FMN-dependent nitroreductase-like
PLEKHG1	57480	genome.wustl.edu	37	6	151054845	151054845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029884.1	+1	provisional	p.V10I	0.038	255	0%	123	33.3%	3	33.3%	benign(0.006)	tolerated(0.74)	neutral(0.002)	NULL
MTHFD1L	25902	genome.wustl.edu	37	6	151204010	151204010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015440.3	+1	validated	p.K177T	1.000	100	0%	75	26.7%	39	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_THF_DHG_CYH,superfamily_Aminoacid dehydrogenase-like N-terminal domain
C6orf97	80129	genome.wustl.edu	37	6	151907141	151907141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025059.3	+1	validated	p.L404I	0.934	91	0%	56	28.6%	1	0%	probably_damaging(0.991)	tolerated(0.3)	deleterious(0.473)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152476150	152476150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.Q8002H	1.000	407	0.2%	267	41.6%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152477078	152477078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.N7982S	0.997	237	0%	149	28.2%	4	0%	benign(0.353)	tolerated(0.11)	neutral(0.383)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152546921	152546921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.V7096I	0.992	514	0%	271	14.8%	2	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152546990	152546990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.A7073T	1.000	314	0%	180	25.6%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152602995	152602995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.L6110M	0.038	133	0%	75	30.7%	1	0%	possibly_damaging(0.807)	tolerated(0.12)	deleterious(0.565)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152603057	152603057	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R6089H	1.000	167	0.6%	80	26.3%	0	-	benign(0.013)	tolerated(0.31)	neutral(0.028)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152647643	152647643	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.S5027	0.985	153	0.7%	75	30.7%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152651196	152651196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.T4875M	0.000	206	0.5%	82	28%	0	-	benign(0.162)	-	-	superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152652610	152652610	+	Missense_Mutation	SNP	G	G	A	rs112087400		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.L4404F	0.927	133	0.8%	97	14.4%	0	-	possibly_damaging(0.951)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152694324	152694324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.H3119Y	0.997	420	0%	248	31.5%	0	-	possibly_damaging(0.893)	tolerated(0.08)	deleterious(0.652)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152806030	152806030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.D375	0.404	372	0%	188	27.7%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152832714	152832714	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033071.2	-1	reviewed	p.G108*	1.000	134	0%	98	31.6%	0	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MYCT1	80177	genome.wustl.edu	37	6	153019055	153019055	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025107.2	+1	validated	p.Y6	0.991	108	0.9%	71	9.9%	0	-	-	-	-	NULL
SCAF8	22828	genome.wustl.edu	37	6	155143449	155143449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.T611M	0.469	696	0%	531	31.8%	35	48.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SCAF8	22828	genome.wustl.edu	37	6	155153576	155153576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014892.3	+1	validated	p.P955S	1.000	713	0%	402	25.4%	36	36.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TIAM2	26230	genome.wustl.edu	37	6	155572088	155572088	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.T1331	0.809	244	0%	111	21.6%	1	0%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
CLDN20	49861	genome.wustl.edu	37	6	155597436	155597436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001346.3	+1	reviewed	p.D195N	0.000	341	0%	204	13.7%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
TMEM242	729515	genome.wustl.edu	37	6	157743781	157743781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018452.4	-1	validated	p.T49P	0.997	253	0%	146	19.2%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1358
SYNJ2	8871	genome.wustl.edu	37	6	158464403	158464403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003898.3	+1	reviewed	p.P256L	0.046	78	0%	58	37.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Syja_N
SYNJ2	8871	genome.wustl.edu	37	6	158509776	158509776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003898.3	+1	reviewed	p.R1143I	0.748	175	0%	94	41.5%	5	60%	possibly_damaging(0.564)	deleterious(0.04)	deleterious(0.541)	NULL
SERAC1	84947	genome.wustl.edu	37	6	158564190	158564190	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032861.3	-1	validated	p.R212S	0.440	403	0%	242	24.4%	10	30%	possibly_damaging(0.926)	deleterious(0.04)	deleterious(0.724)	superfamily_ARM repeat
SERAC1	84947	genome.wustl.edu	37	6	158571518	158571518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032861.3	-1	validated	p.H78Y	0.000	225	0%	116	32.8%	8	62.5%	benign(0.059)	deleterious(0.05)	neutral(0.349)	NULL
TULP4	56995	genome.wustl.edu	37	6	158924396	158924396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020245.3	+1	validated	p.S1234I	1.000	104	0%	66	40.9%	23	60.8%	possibly_damaging(0.455)	deleterious(0)	deleterious(0.594)	NULL
SYTL3	94120	genome.wustl.edu	37	6	159185610	159185610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009991.2	+1	validated	p.T535P	1.000	131	0%	82	20.7%	13	38.4%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RSPH3	83861	genome.wustl.edu	37	6	159401862	159401862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031924.4	-1	validated	p.P410L	0.990	181	0%	134	26.9%	6	33.3%	possibly_damaging(0.756)	deleterious(0.02)	deleterious(0.662)	HMMPfam_Radial_spoke_3
RSPH3	83861	genome.wustl.edu	37	6	159420832	159420832	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031924.4	-1	validated	p.T59	0.008	42	0%	20	25%	7	14.2%	-	-	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159654360	159654360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.Q939R	0.026	47	0%	25	24%	2	0%	unknown(0)	tolerated(0.24)	-	NULL
FNDC1	84624	genome.wustl.edu	37	6	159654380	159654380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.A946T	0.001	49	0%	22	40.9%	2	0%	unknown(0)	deleterious(0.03)	-	NULL
WTAP	9589	genome.wustl.edu	37	6	160176584	160176584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004906.3	+1	reviewed	p.S378P	1.000	249	0%	151	33.1%	40	47.5%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
ACAT2	39	genome.wustl.edu	37	6	160198360	160198360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005891.2	+1	reviewed	p.V262I	1.000	236	0%	133	30.8%	73	34.2%	benign(0.051)	tolerated(0.1)	neutral(0.289)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ACAT2	39	genome.wustl.edu	37	6	160198390	160198390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005891.2	+1	reviewed	p.R272C	0.971	220	0%	111	29.7%	68	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiolase-like
SNORA29	677812	genome.wustl.edu	37	6	160206718	160206718	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002965.1	-1	provisional	NULL	1.000	424	0%	269	27.1%	1	0%	-	-	-	-
PNLDC1	154197	genome.wustl.edu	37	6	160230148	160230148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173516.1	+1	provisional	p.R236S	0.836	244	0%	120	30%	0	-	possibly_damaging(0.553)	deleterious(0.03)	deleterious(0.553)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
IGF2R	3482	genome.wustl.edu	37	6	160455487	160455487	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.G416	0.999	206	0%	118	12.7%	3	0%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160468922	160468922	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.E776	1.000	114	0%	51	37.3%	8	12.5%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160494847	160494847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.R1669H	0.980	147	0%	77	16.9%	28	67.8%	possibly_damaging(0.948)	tolerated(0.06)	deleterious(0.714)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160525893	160525893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.E2418G	0.691	118	0%	76	32.9%	22	4.5%	benign(0.006)	tolerated(0.23)	neutral(0.042)	NULL
SLC22A1	6580	genome.wustl.edu	37	6	160555075	160555075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003057.2	+1	reviewed	p.G253R	0.066	120	0%	62	25.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LPA	4018	genome.wustl.edu	37	6	160966486	160966486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005577.2	-1	reviewed	p.D1795G	0.995	296	0%	136	33.1%	0	-	benign(0.253)	tolerated(0.4)	neutral(0.042)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
LPA	4018	genome.wustl.edu	37	6	160978438	160978438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005577.2	-1	reviewed	p.E1599D	0.000	451	0%	226	28.8%	0	-	probably_damaging(0.971)	tolerated(0.26)	neutral(0.447)	NULL
PLG	5340	genome.wustl.edu	37	6	161139851	161139851	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.T359	0.014	212	0.9%	146	11.6%	0	-	-	-	-	superfamily_Kringle-like
PLG	5340	genome.wustl.edu	37	6	161143599	161143599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.A419V	1.000	410	0.5%	255	21.6%	1	0%	probably_damaging(0.994)	tolerated(0.05)	deleterious(0.797)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like
MAP3K4	4216	genome.wustl.edu	37	6	161533756	161533756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005922.2	+1	reviewed	p.A1526T	1.000	185	0%	100	33%	42	45.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PARK2	5071	genome.wustl.edu	37	6	162864448	162864448	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004562.2	-1	reviewed	p.S22I	1.000	318	0%	227	17.2%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
LOC100129958	100129958	genome.wustl.edu	37	6	162990295	162990295	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719102.1	+1	model	p.A161	1.000	127	0%	51	37.3%	0	-	-	-	-	HMMPfam_Filament
PACRG	135138	genome.wustl.edu	37	6	163735954	163735954	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152410.2	+1	reviewed	p.G276*	1.000	79	0%	44	31.8%	0	-	-	-	-	HMMPfam_ParcG
C6orf118	168090	genome.wustl.edu	37	6	165715163	165715163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144980.3	-1	validated	p.R216S	0.000	137	0.7%	59	18.6%	0	-	possibly_damaging(0.485)	tolerated(0.18)	neutral(0.217)	NULL
C6orf118	168090	genome.wustl.edu	37	6	165723071	165723071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144980.3	-1	validated	p.A2V	0.741	90	0%	56	14.3%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
RPS6KA2	6196	genome.wustl.edu	37	6	166902391	166902391	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006932.1	-1	reviewed	p.P287	1.000	36	0%	19	36.8%	13	61.5%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
GPR31	2853	genome.wustl.edu	37	6	167570713	167570713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005299.2	-1	validated	p.A203T	0.139	227	0%	103	25.2%	0	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	HMMPfam_7tm_1,superfamily_SSF81321
MLLT4	4301	genome.wustl.edu	37	6	168312028	168312028	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423229	+1	known	p.V331I	0.997	331	0%	204	20.1%	28	50%	-	-	-	NULL
MLLT4	4301	genome.wustl.edu	37	6	168363158	168363158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040001.1	+1	validated	p.R1630C	1.000	110	0%	71	33.8%	80	47.5%	possibly_damaging(0.886)	tolerated(0.08)	deleterious(0.646)	NULL
THBS2	7058	genome.wustl.edu	37	6	169648845	169648845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.Q92H	1.000	67	0%	53	17%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
C6orf70	55780	genome.wustl.edu	37	6	170154060	170154060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018341.1	+1	validated	p.S36I	0.001	133	0%	88	22.7%	12	33.3%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	NULL
DLL1	28514	genome.wustl.edu	37	6	170592396	170592396	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005618.3	-1	reviewed	p.A657	0.000	36	2.8%	25	20%	0	-	-	-	-	NULL
FAM120B	84498	genome.wustl.edu	37	6	170627637	170627637	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032448.1	+1	provisional	p.Q387*	0.038	691	0.1%	447	26.2%	19	10.5%	-	-	-	NULL
TBP	6908	genome.wustl.edu	37	6	170876007	170876007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003194.4	+1	reviewed	p.R196Q	1.000	77	0%	38	23.7%	21	42.8%	unknown(0)	tolerated(0.05)	-	HMMPfam_TBP,PatternScan_TFIID,superfamily_TFIID_C/glycos_N
HEATR2	54919	genome.wustl.edu	37	7	769436	769436	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440747	+1	known	p.R46*	0.935	32	3.1%	18	50%	27	62.9%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
SUN1	23353	genome.wustl.edu	37	7	889236	889236	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433212	+1	known	p.A30T	0.000	216	0.5%	105	28.6%	26	46.1%	-	-	-	NULL
SUN1	23353	genome.wustl.edu	37	7	892452	892452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130965.2	+1	reviewed	p.L306I	0.000	160	0%	90	21.1%	28	46.4%	possibly_damaging(0.918)	tolerated(0.08)	deleterious(0.668)	NULL
GPR146	115330	genome.wustl.edu	37	7	1098145	1098145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138445.2	+1	provisional	p.L332M	0.977	18	0%	14	42.9%	6	0%	benign(0.001)	tolerated(1)	-	NULL
EIF3B	8662	genome.wustl.edu	37	7	2402380	2402380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037283.1	+1	validated	p.L265I	1.000	71	0%	30	26.7%	95	6.3%	possibly_damaging(0.806)	deleterious(0.04)	deleterious(0.652)	superfamily_RNA-binding domain RBD
EIF3B	8662	genome.wustl.edu	37	7	2406669	2406669	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037283.1	+1	validated	p.I464	1.000	243	0%	148	24.3%	67	4.4%	-	-	-	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
IQCE	23288	genome.wustl.edu	37	7	2623312	2623312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152558.3	+1	validated	p.M248T	1.000	30	0%	17	41.2%	19	15.7%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
GNA12	2768	genome.wustl.edu	37	7	2802239	2802239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407653	-1	known	p.I95S	0.001	63	0%	36	16.7%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00275
SDK1	221935	genome.wustl.edu	37	7	4116739	4116739	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152744.3	+1	validated	p.T1040	1.000	63	0%	23	30.4%	1	100%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RBAK	57786	genome.wustl.edu	37	7	5103810	5103810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021163.3	+1	reviewed	p.D241E	0.010	223	0%	173	32.9%	6	83.3%	benign(0.069)	tolerated(0.14)	neutral(0.254)	NULL
SLC29A4	222962	genome.wustl.edu	37	7	5330411	5330411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040661.1	+1	reviewed	p.A73V	1.000	37	0%	23	26.1%	2	50%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_MFS general substrate transporter
RNF216	54476	genome.wustl.edu	37	7	5752410	5752410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207111.2	-1	reviewed	p.Y640H	0.009	66	0%	34	26.5%	18	50%	possibly_damaging(0.649)	tolerated(0.5)	neutral(0.238)	NULL
USP42	84132	genome.wustl.edu	37	7	6187480	6187480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032172.2	+1	validated	p.A448V	0.001	226	0.4%	110	30%	25	36%	benign(0.01)	tolerated(0.06)	neutral(0.323)	NULL
COL28A1	340267	genome.wustl.edu	37	7	7477061	7477061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037763.2	-1	validated	p.M585I	1.000	259	0%	144	34%	0	-	benign(0.278)	tolerated(0.35)	neutral(0.051)	NULL
GLCCI1	113263	genome.wustl.edu	37	7	8062188	8062188	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138426.2	+1	validated	p.Q229*	1.000	131	0%	101	26.7%	5	20%	-	-	-	NULL
NXPH1	30010	genome.wustl.edu	37	7	8475346	8475346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152745.2	+1	reviewed	p.M1I	1.000	158	0%	53	22.6%	0	-	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
LOC340268	340268	genome.wustl.edu	37	7	9766422	9766422	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041608.1	+1	model	NULL	1.000	113	0%	48	25%	0	-	-	-	-	-
ENSG00000248675	0	genome.wustl.edu	37	7	10491154	10491154	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510654	-1	known	NULL	0.736	145	0%	96	19.8%	101	0%	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11022400	11022400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000303905	+1	known	p.A172T	0.000	187	0%	118	30.5%	40	40%	unknown(0)	tolerated(0.76)	-	NULL
THSD7A	221981	genome.wustl.edu	37	7	11514154	11514154	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.R687	0.999	89	0%	91	33%	4	75%	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SCIN	85477	genome.wustl.edu	37	7	12679997	12679997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112706.2	+1	validated	p.P479H	1.000	420	0%	295	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
ETV1	2115	genome.wustl.edu	37	7	14028362	14028362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000405358	-1	known	p.Q10H	1.000	408	0%	274	23.7%	0	-	unknown(0)	deleterious(0)	-	NULL
ETV1	2115	genome.wustl.edu	37	7	14028649	14028649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004956.4	-1	validated	p.P10L	1.000	43	0%	13	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ETS_PEA3_N
DGKB	1607	genome.wustl.edu	37	7	14217711	14217711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004080.2	-1	reviewed	p.T731A	1.000	344	0.3%	203	23.6%	0	-	possibly_damaging(0.839)	tolerated(0.27)	neutral(0.354)	HMMPfam_DAGK_acc,HMMSmart_SM00045
AGMO	392636	genome.wustl.edu	37	7	15240983	15240983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.I422N	0.965	238	0%	191	10.5%	0	-	probably_damaging(0.964)	deleterious(0.02)	deleterious(0.789)	NULL
AGMO	392636	genome.wustl.edu	37	7	15470702	15470702	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.T147	0.980	297	0%	217	30.4%	0	-	-	-	-	HMMPfam_FA_hydroxylase
AGMO	392636	genome.wustl.edu	37	7	15601421	15601421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004320.1	-1	provisional	p.R17H	0.840	289	0%	218	28.9%	0	-	probably_damaging(0.972)	tolerated(0.18)	deleterious(0.470)	NULL
MEOX2	4223	genome.wustl.edu	37	7	15725510	15725510	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005924.4	-1	reviewed	e1+1	1.000	104	0%	62	16.1%	0	-	-	-	-	-
BZW2	28969	genome.wustl.edu	37	7	16737707	16737707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014038.2	+1	validated	p.Q335R	1.000	126	0%	94	29.8%	142	40.8%	benign(0.123)	tolerated(0.28)	neutral(0.042)	HMMSmart_SM00515,superfamily_ARM repeat
AHR	196	genome.wustl.edu	37	7	17349713	17349713	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001621.4	+1	validated	p.S73	0.998	194	0.5%	115	29.6%	8	37.5%	-	-	-	HMMPfam_HLH,HMMSmart_SM00353
HDAC9	9734	genome.wustl.edu	37	7	18684314	18684314	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178425.2	+1	reviewed	p.R311	0.997	183	0%	151	28.5%	23	43.4%	-	-	-	NULL
HDAC9	9734	genome.wustl.edu	37	7	18684359	18684359	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178425.2	+1	reviewed	p.T326	1.000	168	0%	139	29.5%	22	27.2%	-	-	-	NULL
HDAC9	9734	genome.wustl.edu	37	7	19015522	19015522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178425.2	+1	reviewed	p.A1039D	1.000	129	0%	72	13.9%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TWISTNB	221830	genome.wustl.edu	37	7	19738335	19738335	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002926.1	-1	validated	p.R207	0.021	400	0%	240	27.5%	12	50%	-	-	-	NULL
TMEM196	256130	genome.wustl.edu	37	7	19765250	19765250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152774.3	-1	validated	p.G116R	0.999	138	0%	93	31.2%	0	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	NULL
ITGB8	3696	genome.wustl.edu	37	7	20444432	20444432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002214.2	+1	reviewed	p.F623L	1.000	211	0%	141	26.2%	3	66.6%	benign(0)	tolerated(0.78)	neutral(0.001)	HMMPfam_EGF_2,superfamily_EGF/Laminin
ABCB5	340273	genome.wustl.edu	37	7	20685597	20685597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000404938	+1	known	p.L273I	0.966	321	0.3%	202	29.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNAH11	8701	genome.wustl.edu	37	7	21906270	21906270	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.T3900	0.002	241	0%	156	33.3%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH11	8701	genome.wustl.edu	37	7	21908481	21908481	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	e73-1	1.000	205	0%	143	25.2%	0	-	-	-	-	-
CDCA7L	55536	genome.wustl.edu	37	7	21942672	21942672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018719.4	-1	validated	p.G420S	1.000	118	0.8%	45	33.3%	32	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-4CXXC_R1
CDCA7L	55536	genome.wustl.edu	37	7	21947809	21947809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018719.4	-1	validated	p.S207I	0.001	106	0%	65	23.1%	35	34.2%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
RAPGEF5	9771	genome.wustl.edu	37	7	22194137	22194137	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012294.3	-1	validated	p.V421	0.047	129	0%	77	33.8%	3	66.6%	-	-	-	superfamily_Ras GEF
RAPGEF5	9771	genome.wustl.edu	37	7	22206738	22206738	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012294.3	-1	validated	p.T258	1.000	75	0%	72	30.6%	4	25%	-	-	-	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
KLHL7	55975	genome.wustl.edu	37	7	23180389	23180389	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031710.2	+1	reviewed	p.G148	0.998	204	0%	124	29.8%	26	46.1%	-	-	-	HMMPfam_BACK
GPNMB	10457	genome.wustl.edu	37	7	23299622	23299622	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005340.1	+1	reviewed	p.R189*	0.968	373	0%	207	28%	42	0%	-	-	-	NULL
DFNA5	1687	genome.wustl.edu	37	7	24738874	24738874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127453.1	-1	reviewed	p.R421H	0.000	150	0%	67	25.4%	6	0%	benign(0.007)	tolerated(0.49)	neutral(0.011)	HMMPfam_Gasdermin
OSBPL3	26031	genome.wustl.edu	37	7	24846505	24846505	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.G778	0.642	305	0%	217	29%	18	44.4%	-	-	-	HMMPfam_Oxysterol_BP
OSBPL3	26031	genome.wustl.edu	37	7	24849459	24849459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.G762S	0.015	144	0%	90	35.6%	13	23%	benign(0)	tolerated(0.73)	neutral(0.002)	HMMPfam_Oxysterol_BP
C7orf31	136895	genome.wustl.edu	37	7	25175672	25175672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138811.3	-1	validated	p.D564E	0.001	275	0%	183	10.9%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
NPVF	64111	genome.wustl.edu	37	7	25266366	25266366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022150.3	-1	validated	p.V140I	0.000	723	0%	397	29.7%	0	-	benign(0)	tolerated(1)	-	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224239	26224239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	p.Q307H	0.986	505	0.2%	265	30.6%	51	35.2%	possibly_damaging(0.805)	deleterious(0.05)	deleterious(0.648)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224488	26224488	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	p.D390	1.000	497	0.2%	278	11.2%	53	11.3%	-	-	-	NULL
HNRNPA2B1	3181	genome.wustl.edu	37	7	26237309	26237309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031243.2	-1	reviewed	p.S29N	1.000	110	0%	62	11.3%	926	13.4%	probably_damaging(0.98)	tolerated(0.19)	deleterious(0.473)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HOXA1	3198	genome.wustl.edu	37	7	27134213	27134213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.K285M	1.000	89	0%	57	33.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
HOXA1	3198	genome.wustl.edu	37	7	27135311	27135311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.H74R	0.943	61	1.6%	32	53.1%	0	-	benign(0.17)	tolerated(0.39)	neutral(0.032)	NULL
HOXA3	3200	genome.wustl.edu	37	7	27147830	27147830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030661.4	-1	reviewed	p.A346T	1.000	15	0.000	9	0.667	0	-	benign(0.004)	tolerated(1)	-	NULL
HOXA10	3206	genome.wustl.edu	37	7	27211672	27211672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018951.3	-1	reviewed	p.Y360C	1.000	147	0%	87	36.8%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
JAZF1	221895	genome.wustl.edu	37	7	27934919	27934919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175061.3	-1	reviewed	p.R102H	1.000	89	1.1%	60	36.7%	10	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
JAZF1	221895	genome.wustl.edu	37	7	28031528	28031528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175061.3	-1	reviewed	p.R63I	1.000	217	0%	138	14.5%	13	23%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LOC402644	402644	genome.wustl.edu	37	7	28319206	28319206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126493.1	-1	predicted	p.A38V	1.000	418	0%	238	30.7%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
C7orf41	222166	genome.wustl.edu	37	7	30197086	30197086	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152793.2	+1	validated	p.A106	0.001	182	0%	96	27.1%	30	33.3%	-	-	-	NULL
NOD1	10392	genome.wustl.edu	37	7	30491063	30491063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006092.2	-1	reviewed	p.R657H	1.000	31	0%	15	33.3%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRHR2	1395	genome.wustl.edu	37	7	30706905	30706905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001883.3	-1	validated	p.E85V	1.000	204	0%	100	15%	0	-	benign(0.035)	tolerated(0.25)	neutral(0.039)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like
INMT	11185	genome.wustl.edu	37	7	30791815	30791815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006774.4	+1	reviewed	p.P17S	0.330	253	0%	128	28.1%	7	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_NNMT_PNMT_TEMT,superfamily_SSF53335
INMT	11185	genome.wustl.edu	37	7	30793366	30793366	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451002	+1	known	p.A58T	0.002	533	0%	276	34.1%	3	0%	-	-	-	HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FAM188B	84182	genome.wustl.edu	37	7	30825570	30825570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032222.2	+1	validated	p.R209*	0.999	155	0%	73	37%	6	16.6%	-	-	-	NULL
NEUROD6	63974	genome.wustl.edu	37	7	31377958	31377958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022728.2	-1	provisional	p.P309S	1.000	278	0.4%	134	23.9%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
NEUROD6	63974	genome.wustl.edu	37	7	31378298	31378298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022728.2	-1	provisional	p.E195D	0.987	306	0%	161	13%	0	-	benign(0)	tolerated(0.93)	-	NULL
CCDC129	223075	genome.wustl.edu	37	7	31683331	31683331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194300.2	+1	validated	p.V783I	0.004	150	0.7%	85	25.9%	3	0%	possibly_damaging(0.945)	tolerated(0.74)	neutral(0.391)	NULL
FKBP9	11328	genome.wustl.edu	37	7	33015974	33015974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007270.3	+1	validated	p.R189H	1.000	474	0.2%	217	32.3%	46	47.8%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_FKBP_C,superfamily_SSF54534
FKBP9	11328	genome.wustl.edu	37	7	33028165	33028165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007270.3	+1	validated	p.V314M	1.000	254	0%	127	20.5%	44	38.6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_FKBP_C,superfamily_SSF54534
FKBP9	11328	genome.wustl.edu	37	7	33039774	33039774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007270.3	+1	validated	p.V425A	0.999	342	0.3%	160	14.4%	50	12%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_FKBP_C,superfamily_SSF54534
NT5C3	51251	genome.wustl.edu	37	7	33057034	33057034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409787	-1	known	p.R203H	0.007	224	0%	126	19%	0	-	unknown(0)	tolerated(0.25)	-	NULL
RP9	6100	genome.wustl.edu	37	7	33136960	33136960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203288.1	-1	reviewed	p.R110C	1.000	148	0%	88	21.6%	28	21.4%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMSmart_ZnF_C2HC
DPY19L1	23333	genome.wustl.edu	37	7	34979907	34979907	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015283.1	-1	validated	p.P501	1.000	116	0%	60	28.3%	35	80%	-	-	-	HMMPfam_DUF2211
DPY19L1	23333	genome.wustl.edu	37	7	34994940	34994940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015283.1	-1	validated	p.V334I	0.986	166	0%	116	17.2%	6	50%	benign(0.094)	tolerated(0.38)	neutral(0.025)	HMMPfam_DUF2211
DPY19L2	283417	genome.wustl.edu	37	7	35142527	35142527	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458672	-1	known	NULL	0.989	339	0%	233	11.2%	0	-	-	-	-	-
HERPUD2	64224	genome.wustl.edu	37	7	35673362	35673362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022373.4	-1	validated	p.S387P	1.000	258	0%	163	28.8%	23	39.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ELMO1	9844	genome.wustl.edu	37	7	37264525	37264525	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014800.9	-1	reviewed	p.A220	0.000	288	0%	152	30.9%	4	25%	-	-	-	superfamily_ARM repeat
ELMO1	9844	genome.wustl.edu	37	7	37298953	37298953	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014800.9	-1	reviewed	p.A82	0.998	317	0%	183	26.8%	3	0%	-	-	-	NULL
GPR141	353345	genome.wustl.edu	37	7	37780418	37780418	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181791.1	+1	provisional	p.T141	0.000	559	0%	384	33.1%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SFRP4	6424	genome.wustl.edu	37	7	37947238	37947238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003014.3	-1	reviewed	p.R295Q	0.022	135	0%	82	23.2%	91	0%	benign(0.011)	tolerated(0.45)	neutral(0.013)	NULL
EPDR1	54749	genome.wustl.edu	37	7	37988528	37988528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017549.3	+1	reviewed	p.T239I	0.960	509	0%	280	27.9%	10	30%	possibly_damaging(0.697)	tolerated(0.08)	deleterious(0.550)	HMMPfam_Ependymin
VPS41	27072	genome.wustl.edu	37	7	38796553	38796553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014396.3	-1	reviewed	p.A527D	1.000	249	0%	212	13.2%	18	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like,superfamily_ARM repeat
INHBA	3624	genome.wustl.edu	37	7	41729843	41729843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002192.2	-1	reviewed	p.R229Q	0.988	93	0%	57	21.1%	1	0%	possibly_damaging(0.72)	tolerated(0.48)	neutral(0.272)	HMMPfam_TGFb_propeptide
GLI3	2737	genome.wustl.edu	37	7	42012008	42012008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.Q677H	1.000	152	0%	68	35.3%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
GLI3	2737	genome.wustl.edu	37	7	42262746	42262746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.S36F	1.000	424	0%	214	27.6%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
C7orf44	55744	genome.wustl.edu	37	7	43679205	43679205	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018224.2	-1	validated	p.N139	0.000	203	0%	106	33%	96	45.8%	-	-	-	NULL
SPDYE1	285955	genome.wustl.edu	37	7	44040748	44040748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175064.2	+1	validated	p.P42T	0.020	364	0%	224	9.4%	1	0%	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	NULL
SPDYE1	285955	genome.wustl.edu	37	7	44042398	44042398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175064.2	+1	validated	p.A157S	0.484	542	0.2%	385	9.9%	3	0%	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	NULL
POLM	27434	genome.wustl.edu	37	7	44112928	44112928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013284.2	-1	validated	p.G483C	1.000	78	1.3%	44	40.9%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_POLXc,superfamily_SSF81301
POLD2	5425	genome.wustl.edu	37	7	44157585	44157585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127218.1	-1	validated	p.A100D	1.000	90	0%	41	31.7%	141	45.3%	benign(0.086)	tolerated(0.44)	neutral(0.019)	NULL
MYL7	58498	genome.wustl.edu	37	7	44180894	44180894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457910	-1	known	p.A4V	0.070	49	0%	25	32%	0	-	unknown(0)	-	-	NULL
NUDCD3	23386	genome.wustl.edu	37	7	44425715	44425715	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015332.3	-1	reviewed	p.V327	1.000	106	0%	54	18.5%	29	31%	-	-	-	NULL
NUDCD3	23386	genome.wustl.edu	37	7	44524647	44524647	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015332.3	-1	reviewed	p.A143	0.000	222	0.5%	141	32.6%	18	61.1%	-	-	-	NULL
NPC1L1	29881	genome.wustl.edu	37	7	44571808	44571808	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.R806	0.002	88	0%	31	29%	0	-	-	-	-	HMMPfam_Patched
NPC1L1	29881	genome.wustl.edu	37	7	44579896	44579896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.A34T	1.000	49	0%	27	29.6%	0	-	benign(0.003)	tolerated(0.23)	neutral(0.042)	NULL
DDX56	54606	genome.wustl.edu	37	7	44609693	44609693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019082.2	-1	reviewed	p.I349V	1.000	36	0%	15	33.3%	110	41.8%	benign(0.168)	tolerated(0.45)	neutral(0.027)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
OGDH	4967	genome.wustl.edu	37	7	44714075	44714075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.V285A	0.994	155	0%	92	27.2%	27	3.7%	benign(0.05)	tolerated(0.45)	neutral(0.015)	HMMPfam_E1_dh,superfamily_SSF52518
CCM2	83605	genome.wustl.edu	37	7	45113873	45113873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029835.2	+1	reviewed	p.R328H	1.000	14	0%	12	33.3%	63	44.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ADCY1	107	genome.wustl.edu	37	7	45650087	45650087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.D300V	1.000	53	0%	30	30%	0	-	benign(0.301)	deleterious(0.01)	deleterious(0.499)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
ADCY1	107	genome.wustl.edu	37	7	45742986	45742986	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021116.2	+1	reviewed	p.E822	0.998	99	0%	48	22.9%	1	0%	-	-	-	NULL
IGFBP1	3484	genome.wustl.edu	37	7	45930178	45930178	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000483548	+1	known	p.R11Q	0.013	132	0%	71	25.4%	1	0%	-	-	-	NULL
IGFBP3	3486	genome.wustl.edu	37	7	45954426	45954426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013398.1	-1	reviewed	p.S296N	1.000	53	0%	28	25%	81	1.2%	benign(0.106)	tolerated(0.21)	neutral(0.052)	superfamily_Thyroglobulin type-1 domain
IGFBP3	3486	genome.wustl.edu	37	7	45957011	45957011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013398.1	-1	reviewed	p.R150H	0.000	154	0%	66	25.8%	40	12.5%	benign(0.003)	tolerated(0.39)	neutral(0.016)	NULL
TNS3	64759	genome.wustl.edu	37	7	47342724	47342724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.G1094E	0.925	51	0%	18	33.3%	20	20%	benign(0.018)	tolerated(0.8)	neutral(0.001)	NULL
TNS3	64759	genome.wustl.edu	37	7	47384537	47384537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.P851S	1.000	125	0%	83	32.5%	19	42.1%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	NULL
TNS3	64759	genome.wustl.edu	37	7	47408008	47408008	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.R745	0.000	123	0%	49	28.6%	20	10%	-	-	-	NULL
TNS3	64759	genome.wustl.edu	37	7	47474894	47474894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022748.10	-1	validated	p.V104I	1.000	88	0%	69	27.5%	17	17.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PKD1L1	168507	genome.wustl.edu	37	7	47814754	47814754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.I2846T	0.000	255	0%	136	33.8%	0	-	unknown(0)	-	-	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47898329	47898329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.S1435L	0.001	346	0%	206	31.6%	1	0%	benign(0.062)	tolerated(0.06)	neutral(0.327)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48335383	48335383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.K3014N	0.000	390	0.3%	171	15.2%	1	0%	possibly_damaging(0.916)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48353866	48353866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.G3240D	0.789	76	0%	62	12.9%	1	0%	possibly_damaging(0.95)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48467392	48467392	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453246	+1	known	p.Q429*	0.047	82	0%	47	40.4%	0	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48567857	48567857	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453246	+1	known	p.W1022*	1.000	70	0%	65	36.9%	1	0%	probably_damaging(0.975)	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZPBP	11055	genome.wustl.edu	37	7	50070739	50070739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.V219I	0.998	406	0%	304	26.6%	0	-	possibly_damaging(0.937)	tolerated(0.06)	deleterious(0.706)	HMMPfam_Sp38
ZPBP	11055	genome.wustl.edu	37	7	50097728	50097728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.R115H	0.022	238	0%	179	12.3%	0	-	benign(0.01)	tolerated(0.1)	neutral(0.287)	HMMPfam_Sp38
IKZF1	10320	genome.wustl.edu	37	7	50468244	50468244	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006060.3	+1	validated	p.T440I	1.000	54	0%	36	22.2%	1	0%	-	-	-	NULL
DDC	1644	genome.wustl.edu	37	7	50534916	50534916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000790.3	-1	reviewed	p.L413P	0.996	259	0%	170	14.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
DDC	1644	genome.wustl.edu	37	7	50560675	50560675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380984	-1	known	p.L325M	0.001	62	0%	37	10.8%	0	-	unknown(0)	deleterious(0)	-	superfamily_PLP-dependent transferases
COBL	23242	genome.wustl.edu	37	7	51096511	51096511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015198.3	-1	validated	p.S761Y	0.000	111	0%	49	30.6%	16	62.5%	possibly_damaging(0.644)	deleterious(0.02)	deleterious(0.609)	NULL
COBL	23242	genome.wustl.edu	37	7	51096591	51096591	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015198.3	-1	validated	p.D734	0.394	113	0%	49	24.5%	12	41.6%	-	-	-	NULL
COBL	23242	genome.wustl.edu	37	7	51203979	51203979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015198.3	-1	validated	p.T278M	0.000	88	0%	47	27.7%	11	36.3%	benign(0.153)	deleterious(0)	neutral(0.458)	HMMPfam_Cobl
POM121L12	285877	genome.wustl.edu	37	7	53104173	53104173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182595.3	+1	validated	p.A270V	0.000	106	0%	49	22.4%	0	-	probably_damaging(0.988)	-	-	NULL
EGFR	1956	genome.wustl.edu	37	7	55214316	55214316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005228.3	+1	reviewed	p.V148M	0.984	85	0%	34	23.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Recep_L_domain,superfamily_L domain-like
EGFR	1956	genome.wustl.edu	37	7	55227854	55227854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005228.3	+1	reviewed	p.V441I	0.897	177	0%	79	19%	6	16.6%	benign(0.009)	tolerated(0.31)	neutral(0.028)	HMMPfam_Recep_L_domain,superfamily_L domain-like
EGFR	1956	genome.wustl.edu	37	7	55259423	55259423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005228.3	+1	reviewed	p.Y827*	1.000	170	0%	108	25.9%	6	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LANCL2	55915	genome.wustl.edu	37	7	55466117	55466117	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018697.3	+1	validated	p.G108	1.000	181	0%	99	29.3%	12	33.3%	-	-	-	HMMPfam_LANC_like
ENSG00000206603	0	genome.wustl.edu	37	7	56123061	56123061	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383876	+1	novel	NULL	1.000	270	0%	131	29.8%	0	-	-	-	-	-
CCT6A	908	genome.wustl.edu	37	7	56126368	56126368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001762.3	+1	reviewed	p.R314H	1.000	223	0.4%	131	29%	181	35.9%	possibly_damaging(0.649)	deleterious(0.01)	deleterious(0.634)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
SUMF2	25870	genome.wustl.edu	37	7	56141844	56141844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451338	+1	known	p.S123N	0.000	241	0%	145	24.8%	0	-	unknown(0)	tolerated(0.51)	-	HMMPfam_DUF323
PHKG1	5260	genome.wustl.edu	37	7	56155321	56155321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006213.3	-1	reviewed	p.L78M	1.000	50	0%	21	42.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PHKG1	5260	genome.wustl.edu	37	7	56156559	56156559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006213.3	-1	reviewed	p.L26M	1.000	64	0%	24	25%	1	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
LOC441228	441228	genome.wustl.edu	37	7	56358437	56358437	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016387.3	+1	model	NULL	1.000	346	0%	181	14.4%	0	-	-	-	-	-
ZNF479	90827	genome.wustl.edu	37	7	57187710	57187710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033273.1	-1	provisional	p.G471D	0.996	424	0.5%	324	21.9%	0	-	possibly_damaging(0.591)	deleterious(0.04)	deleterious(0.553)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF479	90827	genome.wustl.edu	37	7	57187859	57187859	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033273.1	-1	provisional	p.S421	0.000	437	0%	364	24.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF736	728927	genome.wustl.edu	37	7	63809076	63809076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423484	+1	known	p.H279Y	1.000	191	0.5%	131	22.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF107	51427	genome.wustl.edu	37	7	64167156	64167156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.K158N	0.988	287	0%	212	32.1%	2	0%	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	superfamily_SSF57667
ZNF138	7697	genome.wustl.edu	37	7	64276028	64276028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006524.2	+1	validated	p.S12P	0.011	267	0%	125	31.2%	3	33.3%	benign(0)	tolerated(1)	-	NULL
ZNF273	10793	genome.wustl.edu	37	7	64389020	64389020	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021148.2	+1	reviewed	p.A438	0.181	228	0%	139	29.5%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF117	51351	genome.wustl.edu	37	7	64438524	64438524	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015852.3	-1	validated	p.C475	0.028	188	0%	168	11.9%	13	7.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ENSG00000245043	0	genome.wustl.edu	37	7	64533860	64533860	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501153	-1	known	NULL	1.000	57	0%	37	16.2%	4	0%	-	-	-	-
LOC442572	442572	genome.wustl.edu	37	7	66744938	66744938	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_499314.5	+1	model	p.T98	0.004	331	0%	193	29.5%	0	-	-	-	-	NULL
AUTS2	26053	genome.wustl.edu	37	7	70255912	70255912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015570.2	+1	validated	p.T1237M	1.000	37	0%	17	29.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TBL2	26608	genome.wustl.edu	37	7	72987682	72987682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012453.2	-1	reviewed	p.A189V	0.997	97	0%	54	16.7%	49	40.8%	probably_damaging(0.996)	tolerated(0.26)	deleterious(0.496)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TBL2	26608	genome.wustl.edu	37	7	72988735	72988735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012453.2	-1	reviewed	p.R80H	0.992	35	0%	15	26.7%	51	33.3%	probably_damaging(0.973)	tolerated(0.09)	deleterious(0.712)	HMMSmart_WD40,HMMPfam_WD40
CLIP2	7461	genome.wustl.edu	37	7	73800909	73800909	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003388.4	+1	reviewed	p.T846	0.981	65	0%	36	30.6%	6	50%	-	-	-	NULL
GTF2IRD1	9569	genome.wustl.edu	37	7	73922429	73922429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016328.1	+1	reviewed	p.R7C	1.000	72	0%	24	25%	3	33.3%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
LOC100132585	100132585	genome.wustl.edu	37	7	74323165	74323165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722111.2	-1	model	p.A177V	0.085	111	0%	52	46.2%	4	50%	-	-	-	NULL
POM121C	100101267	genome.wustl.edu	37	7	75052179	75052179	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099415.1	-1	validated	p.A452	0.001	97	0%	76	17.1%	26	46.1%	-	-	-	NULL
POM121C	100101267	genome.wustl.edu	37	7	75066854	75066854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099415.1	-1	validated	p.I140T	1.000	569	0%	295	31.2%	30	63.3%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
PMS2P3	5387	genome.wustl.edu	37	7	75144030	75144030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301956	-1	known	p.L205I	1.000	558	0%	335	28.4%	9	22.2%	-	-	-	HMMPfam_HATPase_c,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
RSBN1L	222194	genome.wustl.edu	37	7	77397997	77397997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198467.2	+1	validated	p.T501M	1.000	122	0%	57	22.8%	25	36%	probably_damaging(0.99)	tolerated(0.09)	deleterious(0.738)	NULL
TMEM60	85025	genome.wustl.edu	37	7	77423356	77423356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032936.3	-1	validated	p.P112H	1.000	253	0%	159	25.8%	63	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHTF2	57157	genome.wustl.edu	37	7	77549647	77549647	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127357.1	+1	validated	p.G242	1.000	162	0%	110	15.5%	11	9%	-	-	-	NULL
PHTF2	57157	genome.wustl.edu	37	7	77579118	77579118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127357.1	+1	validated	p.Y661H	1.000	42	0%	28	28.6%	19	47.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GNAI1	2770	genome.wustl.edu	37	7	79846721	79846721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002069.5	+1	validated	p.A326V	1.000	304	0%	214	25.7%	40	45%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CD36	948	genome.wustl.edu	37	7	80301355	80301355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000072.3	+1	reviewed	p.P375H	1.000	100	0%	79	15.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CD36
SEMA3C	10512	genome.wustl.edu	37	7	80432040	80432040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006379.2	-1	validated	p.A286V	1.000	188	0%	103	12.6%	36	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
HGF	3082	genome.wustl.edu	37	7	81334828	81334828	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.R630*	0.975	178	0.6%	147	29.9%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
HGF	3082	genome.wustl.edu	37	7	81372699	81372699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.R279C	1.000	259	0.4%	201	24.9%	2	0%	possibly_damaging(0.814)	deleterious(0.01)	deleterious(0.713)	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
CACNA2D1	781	genome.wustl.edu	37	7	81589056	81589056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.L1019R	0.999	79	0%	71	33.8%	11	63.6%	possibly_damaging(0.734)	deleterious(0.02)	deleterious(0.651)	NULL
CACNA2D1	781	genome.wustl.edu	37	7	81596485	81596485	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000722.2	-1	reviewed	p.D834	1.000	199	0%	191	26.7%	2	50%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82538249	82538249	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.R4461*	1.000	296	0.3%	279	11.1%	1	0%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82580154	82580154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.K3250N	1.000	272	0%	201	24.4%	2	50%	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82581179	82581179	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.V3030	0.221	298	0%	174	28.7%	2	0%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82584681	82584681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.I1863T	1.000	850	0.1%	615	33%	0	-	probably_damaging(0.959)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82585631	82585631	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.S1546	0.760	552	0%	406	34%	0	-	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82785657	82785657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.P100	0.411	89	0%	57	35.1%	0	-	-	-	-	NULL
SEMA3A	10371	genome.wustl.edu	37	7	83823811	83823811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006080.2	-1	reviewed	p.R31M	1.000	295	0%	198	13.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Sema
SEMA3D	223117	genome.wustl.edu	37	7	84644524	84644524	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152754.2	-1	validated	p.L518	1.000	544	0%	467	11.6%	0	-	-	-	-	superfamily_Sema
GRM3	2913	genome.wustl.edu	37	7	86394748	86394748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.L96S	1.000	865	0.1%	689	26.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM3	2913	genome.wustl.edu	37	7	86394905	86394905	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.G148	0.984	468	0%	368	29.6%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
C7orf23	79161	genome.wustl.edu	37	7	86827213	86827213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423734	-1	known	p.S93I	0.000	115	0%	136	27.2%	0	-	unknown(0)	-	-	NULL
CROT	54677	genome.wustl.edu	37	7	87011847	87011847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143935.1	+1	reviewed	p.R458I	0.999	463	0%	382	29.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ABCB4	5244	genome.wustl.edu	37	7	87031457	87031457	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440025	-1	known	p.L77I	1.000	322	0%	209	19.6%	9	11.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB4	5244	genome.wustl.edu	37	7	87035716	87035716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018849.2	-1	reviewed	p.S1132N	1.000	523	0%	342	25.1%	1	100%	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCB1	5243	genome.wustl.edu	37	7	87179255	87179255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.R489H	1.000	836	0.2%	504	27.6%	35	34.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DBF4	10926	genome.wustl.edu	37	7	87514321	87514321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.I83V	1.000	170	0%	99	24.2%	75	41.3%	probably_damaging(0.987)	tolerated(0.45)	neutral(0.449)	NULL
DBF4	10926	genome.wustl.edu	37	7	87537118	87537118	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.P555	0.002	460	0%	279	11.5%	109	25.6%	-	-	-	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88965566	88965566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.E1090D	1.000	297	0%	191	14.7%	0	-	possibly_damaging(0.893)	tolerated(0.71)	neutral(0.353)	NULL
GTPBP10	85865	genome.wustl.edu	37	7	90014437	90014437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033107.2	+1	validated	p.A378D	0.004	364	0%	234	14.1%	14	21.4%	benign(0.323)	tolerated(0.11)	neutral(0.373)	NULL
CDK14	5218	genome.wustl.edu	37	7	90355996	90355996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012395.2	+1	validated	p.F62Y	1.000	619	0%	473	28.3%	5	80%	benign(0.15)	deleterious(0)	neutral(0.458)	NULL
CDK14	5218	genome.wustl.edu	37	7	90492545	90492545	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012395.2	+1	validated	p.I182	1.000	157	0%	113	29.2%	4	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CDK14	5218	genome.wustl.edu	37	7	90741891	90741891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012395.2	+1	validated	p.S379P	1.000	599	0%	435	26%	7	42.8%	possibly_damaging(0.503)	deleterious(0.03)	deleterious(0.532)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AKAP9	10142	genome.wustl.edu	37	7	91645474	91645474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.T1215N	1.000	239	0%	154	24.7%	2	100%	benign(0.131)	deleterious(0.02)	neutral(0.394)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91691662	91691662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.R1947C	1.000	354	0%	280	37.1%	4	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
CYP51A1	1595	genome.wustl.edu	37	7	91743043	91743043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000786.3	-1	reviewed	p.N489T	1.000	262	0%	192	31.2%	55	85.4%	possibly_damaging(0.868)	deleterious(0.01)	deleterious(0.743)	HMMPfam_p450,superfamily_Cytochrome P450
ANKIB1	54467	genome.wustl.edu	37	7	92027598	92027598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.L869M	1.000	80	0%	46	26.1%	33	51.5%	benign(0.013)	tolerated(0.18)	neutral(0.057)	NULL
ERVW-1	30816	genome.wustl.edu	37	7	92098573	92098573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014590.3	-1	reviewed	p.L375I	0.481	138	0%	70	24.3%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_TLV_coat
PEX1	5189	genome.wustl.edu	37	7	92147067	92147067	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.S254	0.995	162	0%	106	30.2%	20	40%	-	-	-	NULL
CDK6	1021	genome.wustl.edu	37	7	92247427	92247427	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145306.1	-1	reviewed	p.F265I	1.000	134	0%	73	42.5%	6	66.6%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SAMD9	54809	genome.wustl.edu	37	7	92730865	92730865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.D1516Y	0.995	347	0%	242	30.2%	4	50%	possibly_damaging(0.677)	tolerated(0.09)	deleterious(0.537)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92731610	92731610	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.S1267	0.511	529	0%	308	17.9%	0	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763820	92763820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.L489I	1.000	933	0%	597	27.1%	1	100%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92763891	92763891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.A465V	0.998	737	0%	456	30%	0	-	possibly_damaging(0.842)	deleterious(0.02)	deleterious(0.705)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92905598	92905598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017667.2	+1	validated	p.Q308R	1.000	247	0%	172	10.5%	23	21.7%	possibly_damaging(0.731)	tolerated(0.28)	neutral(0.298)	HMMPfam_DUF2450
CCDC132	55610	genome.wustl.edu	37	7	92940568	92940568	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458707	+1	known	p.T400M	1.000	464	0%	339	30.4%	14	42.8%	-	-	-	NULL
CALCR	799	genome.wustl.edu	37	7	93055881	93055881	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001742.3	-1	reviewed	p.R404	0.999	84	0%	45	33.3%	0	-	-	-	-	superfamily_SSF81321
CALCR	799	genome.wustl.edu	37	7	93108738	93108738	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001742.3	-1	reviewed	p.R45*	0.001	365	0%	344	29.4%	0	-	-	-	-	superfamily_SSF111418
TFPI2	7980	genome.wustl.edu	37	7	93519481	93519481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006528.2	-1	provisional	p.E80G	0.020	123	0%	56	28.6%	401	9.2%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m
GNGT1	2792	genome.wustl.edu	37	7	93540144	93540144	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021955.3	+1	validated	p.R47*	0.403	302	0%	203	31%	2	100%	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
COL1A2	1278	genome.wustl.edu	37	7	94048844	94048844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000089.3	+1	reviewed	p.A687D	1.000	106	0%	86	12.8%	851	75.7%	unknown(0)	deleterious(0.05)	-	HMMPfam_Collagen
SGCE	8910	genome.wustl.edu	37	7	94228092	94228092	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428696	-1	known	p.R395H	0.043	233	0%	197	13.2%	127	15.7%	-	-	-	HMMPfam_Sarcoglycan_2
PPP1R9A	55607	genome.wustl.edu	37	7	94750068	94750068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017650.2	+1	validated	p.A525S	1.000	471	0%	332	30.1%	9	44.4%	possibly_damaging(0.918)	deleterious(0)	deleterious(0.813)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PON2	5445	genome.wustl.edu	37	7	95035431	95035431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000305.2	-1	reviewed	p.E302D	1.000	368	0%	224	11.2%	105	0.9%	possibly_damaging(0.499)	tolerated(0.09)	neutral(0.463)	superfamily_SSF63829
SLC25A13	10165	genome.wustl.edu	37	7	95822350	95822350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014251.2	-1	reviewed	p.A205D	1.000	356	0%	246	26%	13	38.4%	benign(0.208)	deleterious(0.02)	neutral(0.403)	superfamily_SSF47473
SLC25A13	10165	genome.wustl.edu	37	7	95822481	95822481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014251.2	-1	reviewed	p.E161	0.999	349	0%	232	28.9%	30	53.3%	-	-	-	superfamily_SSF47473
ENSG00000220987	0	genome.wustl.edu	37	7	95936125	95936125	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408060	-1	novel	NULL	0.148	285	0%	154	21.4%	0	-	-	-	-	-
LMTK2	22853	genome.wustl.edu	37	7	97823772	97823772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.S1332N	1.000	92	0%	54	11.1%	12	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAIAP2L1	55971	genome.wustl.edu	37	7	97949385	97949385	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018842.4	-1	reviewed	p.D111	0.994	207	0%	113	34.5%	45	44.4%	-	-	-	HMMPfam_IMD
TRRAP	8295	genome.wustl.edu	37	7	98515214	98515214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.G845V	1.000	113	0%	60	10%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
SMURF1	57154	genome.wustl.edu	37	7	98636096	98636096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020429.1	-1	reviewed	p.A561T	1.000	69	0%	41	31.7%	8	37.5%	benign(0.134)	tolerated(0.17)	neutral(0.070)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
SMURF1	57154	genome.wustl.edu	37	7	98645350	98645350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020429.1	-1	reviewed	p.A396V	1.000	240	0%	108	11.1%	14	7.1%	possibly_damaging(0.502)	tolerated(0.14)	neutral(0.417)	superfamily_Hect E3 ligase catalytic domain
CYP3A5	1577	genome.wustl.edu	37	7	99262882	99262882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000777.2	-1	reviewed	p.I193V	0.759	409	0%	240	27.1%	1	0%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_p450,superfamily_Cytochrome P450
CYP3A43	64816	genome.wustl.edu	37	7	99441767	99441767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022820.3	+1	reviewed	p.L74M	0.672	105	0%	73	23.3%	0	-	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_p450,superfamily_Cytochrome P450
MCM7	4176	genome.wustl.edu	37	7	99695275	99695275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005916.3	-1	reviewed	p.G360E	1.000	1055	0.1%	653	10.6%	84	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPC2	221914	genome.wustl.edu	37	7	99773202	99773202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152742.1	-1	provisional	p.R214H	1.000	33	0%	18	33.3%	1	0%	benign(0.089)	tolerated(0.08)	neutral(0.306)	HMMPfam_Glypican
GPC2	221914	genome.wustl.edu	37	7	99773228	99773228	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152742.1	-1	provisional	p.P205	1.000	41	0%	21	28.6%	2	100%	-	-	-	HMMPfam_Glypican
GPC2	221914	genome.wustl.edu	37	7	99773840	99773840	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152742.1	-1	provisional	p.R105	1.000	73	0%	43	30.2%	3	66.6%	-	-	-	HMMPfam_Glypican
STAG3	10734	genome.wustl.edu	37	7	99798736	99798736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012447.2	+1	validated	p.E695D	1.000	204	0%	119	28.6%	10	40%	benign(0.053)	tolerated(1)	neutral(0.004)	superfamily_ARM repeat
PILRA	29992	genome.wustl.edu	37	7	99987718	99987718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013439.2	+1	reviewed	p.R221M	0.030	186	0%	97	28.9%	7	0%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
LRCH4	4034	genome.wustl.edu	37	7	100179706	100179706	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002319.3	-1	reviewed	p.A150	0.975	40	0%	18	33.3%	41	43.9%	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
FBXO24	26261	genome.wustl.edu	37	7	100187700	100187700	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	e2+2	1.000	293	0%	163	14.1%	0	-	-	-	-	-
TFR2	7036	genome.wustl.edu	37	7	100228566	100228566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003227.3	-1	reviewed	p.T406A	0.001	97	0%	51	23.5%	12	50%	unknown(0)	-	-	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases
EPO	2056	genome.wustl.edu	37	7	100319671	100319671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000799.2	+1	reviewed	p.E82D	1.000	102	0%	37	27%	1	0%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_EPO_TPO,superfamily_4_helix_cytokine
ZAN	7455	genome.wustl.edu	37	7	100334609	100334609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.R144H	0.000	15	0%	10	40%	0	-	benign(0.293)	-	-	HMMPfam_MAM,HMMSmart_SM00137
ZAN	7455	genome.wustl.edu	37	7	100349948	100349948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.T740	0.000	105	1%	61	21.3%	0	-	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100364726	100364726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.T1569I	0.679	132	0%	69	24.6%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_VWD,HMMSmart_SM00216,HMMSmart_SM00215
ZAN	7455	genome.wustl.edu	37	7	100364822	100364822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.A1601V	0.002	118	0%	68	29.4%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_VWD,HMMSmart_SM00216
SRRT	51593	genome.wustl.edu	37	7	100482660	100482660	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015908.5	+1	validated	p.A386	0.016	212	0%	98	20.4%	85	43.5%	-	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100485933	100485933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342198	+1	known	p.R192H	0.003	110	0%	46	58.7%	102	81.3%	possibly_damaging(0.915)	-	-	HMMPfam_ARS2
MUC17	140453	genome.wustl.edu	37	7	100680956	100680956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.A2087T	0.337	423	0%	273	13.9%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100681215	100681215	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.V2173G	0.002	595	0.2%	330	14.8%	0	-	unknown(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100686231	100686231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.P3845H	0.114	105	0%	62	25.8%	0	-	probably_damaging(0.998)	-	-	NULL
SERPINE1	5054	genome.wustl.edu	37	7	100777057	100777057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000602.3	+1	reviewed	p.A261D	0.980	379	0%	216	32.4%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
AP1S1	1174	genome.wustl.edu	37	7	100799899	100799899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001283.3	+1	reviewed	p.R10W	1.000	52	0%	19	47.4%	129	51.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like
RABL5	64792	genome.wustl.edu	37	7	100959630	100959630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022777.2	-1	validated	p.L134M	0.012	175	0%	118	13.6%	80	13.7%	benign(0.264)	tolerated(0.24)	neutral(0.065)	NULL
CUX1	1523	genome.wustl.edu	37	7	101845211	101845211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.Y878*	1.000	42	0%	27	48.1%	2	0%	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101870948	101870948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181552.2	+1	reviewed	p.L1144	0.625	69	0%	26	50%	1	100%	-	-	-	HMMPfam_CUT
ALKBH4	54784	genome.wustl.edu	37	7	102097870	102097870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017621.2	-1	provisional	p.A294T	0.258	28	0%	11	45.5%	15	53.3%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
LRWD1	222229	genome.wustl.edu	37	7	102106412	102106412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152892.1	+1	provisional	p.A77T	0.879	45	0%	25	24%	26	34.6%	benign(0.003)	tolerated(1)	-	superfamily_SSF52058
ARMC10	83787	genome.wustl.edu	37	7	102727151	102727151	+	Missense_Mutation	SNP	G	G	T	rs76904063		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031905.3	+1	validated	p.E156D	1.000	265	0%	175	26.9%	71	26.7%	benign(0.004)	tolerated(0.18)	neutral(0.056)	HMMPfam_DUF634,superfamily_ARM repeat
DNAJC2	27000	genome.wustl.edu	37	7	102968114	102968114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014377.1	-1	reviewed	p.C140Y	1.000	168	0%	134	31.3%	36	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,PatternScan_DNAJ_1
SLC26A5	375611	genome.wustl.edu	37	7	103030920	103030920	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198999.2	-1	reviewed	p.L423	0.998	313	0%	196	14.8%	0	-	-	-	-	HMMPfam_Sulfate_transp
ORC5	5001	genome.wustl.edu	37	7	103777287	103777287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002553.2	-1	reviewed	p.Q401H	1.000	506	0.2%	390	20.3%	30	66.6%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
SRPK2	6733	genome.wustl.edu	37	7	104783702	104783702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182692.1	-1	validated	p.R297C	1.000	503	0.2%	296	12.5%	52	15.3%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	superfamily_Kinase_like,HMMPfam_Pkinase
PUS7	54517	genome.wustl.edu	37	7	105111266	105111266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019042.3	-1	validated	p.E423*	1.000	223	0%	142	25.4%	6	16.6%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
PUS7	54517	genome.wustl.edu	37	7	105112623	105112623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019042.3	-1	validated	p.S398Y	1.000	101	0%	52	13.5%	15	46.6%	possibly_damaging(0.549)	deleterious(0.01)	deleterious(0.592)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
RINT1	60561	genome.wustl.edu	37	7	105204232	105204232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021930.4	+1	validated	p.T575N	0.289	160	1.3%	106	35.8%	14	64.2%	benign(0.026)	tolerated(0.39)	neutral(0.017)	HMMPfam_RINT1_TIP1
RINT1	60561	genome.wustl.edu	37	7	105207701	105207701	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021930.4	+1	validated	p.Q774	0.946	235	0%	133	35.3%	25	36%	-	-	-	HMMPfam_RINT1_TIP1
CDHR3	222256	genome.wustl.edu	37	7	105636732	105636732	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152750.4	+1	validated	p.G215	0.006	22	0.000	9	0.556	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SYPL1	6856	genome.wustl.edu	37	7	105738265	105738265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000464029	-1	known	p.A15V	0.933	251	0%	188	12.2%	179	17.3%	-	-	-	HMMPfam_MARVEL
NAMPT	10135	genome.wustl.edu	37	7	105902059	105902059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005746.2	-1	reviewed	p.G355E	1.000	310	0%	188	25%	25	52%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_NAPRTase
PIK3CG	5294	genome.wustl.edu	37	7	106508374	106508374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002649.2	+1	reviewed	p.R123H	0.639	37	0%	19	42.1%	0	-	possibly_damaging(0.598)	tolerated(0.42)	neutral(0.221)	NULL
PRKAR2B	5577	genome.wustl.edu	37	7	106781398	106781398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002736.2	+1	reviewed	p.R196I	1.000	197	0.5%	131	26%	1	0%	possibly_damaging(0.832)	tolerated(0.09)	deleterious(0.613)	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding
COG5	10466	genome.wustl.edu	37	7	106877061	106877061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006348.3	-1	validated	p.A673V	1.000	333	0%	189	31.7%	27	29.6%	possibly_damaging(0.444)	tolerated(0.28)	neutral(0.176)	NULL
COG5	10466	genome.wustl.edu	37	7	106897177	106897177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006348.3	-1	validated	p.K614N	1.000	252	0%	132	18.9%	8	0%	possibly_damaging(0.639)	tolerated(0.1)	deleterious(0.510)	NULL
GPR22	2845	genome.wustl.edu	37	7	107115403	107115403	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005295.2	+1	reviewed	p.R300*	0.996	238	0.4%	207	21.7%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BCAP29	55973	genome.wustl.edu	37	7	107240866	107240866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008405.2	+1	validated	p.E169K	0.575	139	0%	103	34%	53	33.9%	benign(0.113)	tolerated(0.46)	neutral(0.021)	HMMPfam_Bap31
SLC26A4	5172	genome.wustl.edu	37	7	107323726	107323726	+	Missense_Mutation	SNP	G	G	A	rs111033454	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000441.1	+1	reviewed	p.C282Y	0.999	322	0.3%	279	31.5%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Sulfate_transp
CBLL1	79872	genome.wustl.edu	37	7	107398714	107398714	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024814.2	+1	validated	p.R189	1.000	736	0%	522	25.1%	19	52.6%	-	-	-	HMMSmart_ZnF_C2H2
SLC26A3	1811	genome.wustl.edu	37	7	107408041	107408041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000111.2	-1	reviewed	p.R752C	1.000	204	0%	182	29.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107432298	107432298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000111.2	-1	reviewed	p.G120D	1.000	220	0%	141	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_SLC26A
DLD	1738	genome.wustl.edu	37	7	107545402	107545402	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000108.3	+1	reviewed	e6-1	1.000	193	0%	110	24.5%	2	50%	-	-	-	-
LAMB1	3912	genome.wustl.edu	37	7	107569615	107569615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.M1594T	0.994	416	0%	261	15.7%	27	0%	benign(0)	tolerated(0.57)	neutral(0.006)	superfamily_Prefoldin
LAMB1	3912	genome.wustl.edu	37	7	107575961	107575961	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.R1363*	0.001	654	0%	393	30.8%	21	0%	-	-	-	NULL
LAMB1	3912	genome.wustl.edu	37	7	107621120	107621120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.C271*	1.000	215	0%	149	24.2%	7	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin
LAMB4	22798	genome.wustl.edu	37	7	107717420	107717420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007356.2	-1	validated	p.S698F	0.012	287	0%	152	22.4%	1	100%	possibly_damaging(0.903)	deleterious(0.05)	deleterious(0.704)	NULL
LAMB4	22798	genome.wustl.edu	37	7	107743497	107743497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007356.2	-1	validated	p.A391V	0.080	58	3.4%	31	25.8%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,superfamily_EGF/Laminin
PNPLA8	50640	genome.wustl.edu	37	7	108154614	108154614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015723.2	-1	provisional	p.P394T	1.000	1049	0.1%	758	30.3%	17	47%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ARM repeat
PNPLA8	50640	genome.wustl.edu	37	7	108155287	108155287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015723.2	-1	provisional	p.R217C	0.001	260	0%	143	25.2%	9	33.3%	benign(0.003)	deleterious(0.03)	neutral(0.364)	superfamily_ARM repeat
LRRN3	54674	genome.wustl.edu	37	7	110763030	110763030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099658.1	+1	validated	p.P68S	1.000	464	0%	328	24.1%	0	-	probably_damaging(1)	tolerated(0.6)	deleterious(0.504)	HMMSmart_SM00013,superfamily_L domain-like
LRRN3	54674	genome.wustl.edu	37	7	110763957	110763957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099658.1	+1	validated	p.R377C	1.000	267	0%	170	32.9%	2	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00082,superfamily_L domain-like
ZNF277	11179	genome.wustl.edu	37	7	111982707	111982707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021994.2	+1	validated	p.V426I	0.001	181	0%	105	40%	14	35.7%	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112423785	112423785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.A366T	1.000	780	0.3%	441	26.8%	20	30%	benign(0.008)	tolerated(0.05)	neutral(0.345)	NULL
C7orf60	154743	genome.wustl.edu	37	7	112462251	112462251	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152556.2	-1	validated	p.R256*	1.000	174	0%	146	31.5%	4	0%	-	-	-	NULL
GPR85	54329	genome.wustl.edu	37	7	112724182	112724182	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018970.6	-1	validated	p.Q199*	1.000	191	0%	120	32.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R3A	5506	genome.wustl.edu	37	7	113519666	113519666	+	Missense_Mutation	SNP	G	G	A	rs17847377	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.S494L	0.000	347	0%	243	30%	0	-	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	NULL
TFEC	22797	genome.wustl.edu	37	7	115580852	115580852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012252.2	-1	validated	p.T266I	0.005	374	0%	258	15.1%	5	0%	benign(0.016)	tolerated(0.43)	neutral(0.014)	NULL
TES	26136	genome.wustl.edu	37	7	115890513	115890513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015641.2	+1	reviewed	p.M222T	0.997	107	0%	64	37.5%	70	48.5%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
WNT2	7472	genome.wustl.edu	37	7	116937748	116937748	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003391.2	-1	reviewed	p.N257	1.000	466	0.2%	254	26.4%	9	0%	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
ASZ1	136991	genome.wustl.edu	37	7	117003776	117003776	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130768.2	-1	validated	p.P434	1.000	134	0%	118	39%	0	-	-	-	-	NULL
CFTR	1080	genome.wustl.edu	37	7	117232586	117232586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000492.3	+1	reviewed	p.A789S	0.000	97	0%	64	21.9%	1	0%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117365131	117365131	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446636	-1	known	p.A900T	1.000	272	0%	172	26.7%	2	50%	-	-	-	NULL
CTTNBP2	83992	genome.wustl.edu	37	7	117501335	117501335	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033427.2	-1	reviewed	p.S39	0.942	61	0%	29	58.6%	0	-	-	-	-	HMMPfam_CortBP2
KCND2	3751	genome.wustl.edu	37	7	119914706	119914706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.A7V	1.000	65	0%	32	37.5%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
KCND2	3751	genome.wustl.edu	37	7	119915059	119915059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.I125V	1.000	188	0%	76	13.2%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
KCND2	3751	genome.wustl.edu	37	7	119915169	119915169	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.A161	0.047	83	0%	32	31.2%	0	-	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121650813	121650813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.E571D	0.002	265	0.4%	159	28.3%	0	-	benign(0.008)	tolerated(0.37)	neutral(0.019)	NULL
AASS	10157	genome.wustl.edu	37	7	121721631	121721631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005763.3	-1	reviewed	p.N735D	1.000	226	0%	127	29.9%	1	0%	benign(0.001)	tolerated(0.38)	neutral(0.018)	HMMPfam_Saccharop_dh,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
FEZF1	389549	genome.wustl.edu	37	7	121942182	121942182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024613.2	-1	validated	p.P429S	0.000	26	0%	11	63.6%	0	-	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
FEZF1	389549	genome.wustl.edu	37	7	121944333	121944333	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024613.2	-1	validated	p.Q53	1.000	117	0%	45	20%	0	-	-	-	-	NULL
CADPS2	93664	genome.wustl.edu	37	7	122111541	122111541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017954.10	-1	reviewed	p.H692Y	1.000	111	0%	68	26.5%	14	50%	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	NULL
RNF148	378925	genome.wustl.edu	37	7	122342106	122342106	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447240	-1	known	p.E99*	1.000	276	0%	159	22.6%	2	50%	-	-	-	NULL
NDUFA5	4698	genome.wustl.edu	37	7	123196924	123196924	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000340034	-1	known	p.Q200K	0.000	480	0%	273	21.2%	0	-	unknown(0)	-	-	NULL
ASB15	142685	genome.wustl.edu	37	7	123269396	123269396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080928.3	+1	validated	p.H450Y	1.000	301	0%	144	30.6%	0	-	probably_damaging(0.996)	tolerated(0.95)	neutral(0.462)	superfamily_Ankyrin repeat
LMOD2	442721	genome.wustl.edu	37	7	123302800	123302800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.S387Y	0.998	490	0%	380	30.8%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
LMOD2	442721	genome.wustl.edu	37	7	123303143	123303143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.R501	0.997	71	0%	52	23.1%	0	-	-	-	-	NULL
HYAL4	23553	genome.wustl.edu	37	7	123514860	123514860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012269.2	+1	reviewed	p.A334T	1.000	105	0%	61	34.4%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123593931	123593931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003117.4	+1	reviewed	p.D103N	0.006	391	0%	284	29.2%	0	-	possibly_damaging(0.737)	tolerated(0.33)	neutral(0.294)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
SPAM1	6677	genome.wustl.edu	37	7	123594538	123594538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003117.4	+1	reviewed	p.R305H	1.000	189	0%	177	13.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
POT1	25913	genome.wustl.edu	37	7	124503651	124503651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015450.2	-1	reviewed	p.G100D	1.000	384	0%	275	24%	11	36.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Telo_bind,superfamily_Nucleic acid-binding proteins
GRM8	2918	genome.wustl.edu	37	7	126883203	126883203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000845.2	-1	reviewed	p.A19V	1.000	171	0.6%	91	12.1%	0	-	unknown(0)	-	-	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014195	127014195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265827	-1	known	p.N399D	1.000	553	0%	295	15.9%	12	16.6%	benign(0.077)	tolerated(0.39)	neutral(0.021)	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014814	127014814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265827	-1	known	p.E192D	1.000	554	0%	306	12.7%	10	0%	possibly_damaging(0.718)	tolerated(0.52)	neutral(0.269)	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014844	127014844	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265827	-1	known	p.P182	0.986	569	0.2%	323	24.1%	20	70%	-	-	-	NULL
SND1	27044	genome.wustl.edu	37	7	127528005	127528005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014390.2	+1	validated	p.Y465C	1.000	389	0%	288	27.4%	205	42.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNase,HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold
SND1	27044	genome.wustl.edu	37	7	127727076	127727076	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014390.2	+1	validated	p.A797	1.000	62	0%	30	33.3%	389	50.6%	-	-	-	HMMPfam_TUDOR,superfamily_Staphylococal_nuclease_OB-fold
METTL2B	55798	genome.wustl.edu	37	7	128133901	128133901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018396.2	+1	reviewed	p.H238R	0.998	337	0%	187	31.6%	32	28.1%	probably_damaging(0.976)	tolerated(0.37)	neutral(0.437)	HMMPfam_Methyltransf_12,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FAM71F1	84691	genome.wustl.edu	37	7	128355560	128355560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032599.2	+1	validated	p.R22I	1.000	209	0%	112	27.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FAM71F1	84691	genome.wustl.edu	37	7	128355721	128355721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032599.2	+1	validated	p.V76L	0.996	168	0%	67	32.8%	0	-	benign(0.023)	deleterious(0.02)	neutral(0.384)	NULL
FAM71F1	84691	genome.wustl.edu	37	7	128356996	128356996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032599.2	+1	validated	p.G127R	1.000	137	0%	73	35.6%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OPN1SW	611	genome.wustl.edu	37	7	128415565	128415565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001708.2	-1	reviewed	p.A94T	0.001	421	0%	245	26.9%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FLNC	2318	genome.wustl.edu	37	7	128494922	128494922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.R2364H	0.999	76	0%	28	32.1%	11	0%	benign(0.353)	tolerated(0.27)	neutral(0.145)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ATP6V1F	9296	genome.wustl.edu	37	7	128503038	128503038	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004231.2	+1	reviewed	p.E27V	1.000	18	0%	13	30.8%	134	1.4%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_ATP-synt_F
ATP6V1F	9296	genome.wustl.edu	37	7	128505430	128505430	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004231.2	+1	reviewed	e2-1	1.000	37	0%	23	17.4%	1	100%	-	-	-	-
TNPO3	23534	genome.wustl.edu	37	7	128630166	128630166	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359305	-1	known	p.P483	0.000	199	0%	139	25.9%	0	-	-	-	-	superfamily_ARM repeat
SMO	6608	genome.wustl.edu	37	7	128845610	128845610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005631.3	+1	provisional	p.L303I	1.000	93	0%	46	21.7%	27	18.5%	benign(0.382)	tolerated(0.49)	neutral(0.133)	HMMPfam_Frizzled
SMO	6608	genome.wustl.edu	37	7	128850207	128850207	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005631.3	+1	provisional	p.C490*	1.000	184	0.5%	74	35.1%	28	10.7%	-	-	-	HMMPfam_Frizzled
FAM40B	57464	genome.wustl.edu	37	7	129079865	129079865	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020704.2	+1	validated	p.G44	1.000	108	0%	59	33.9%	0	-	-	-	-	HMMPfam_N1221
FAM40B	57464	genome.wustl.edu	37	7	129100159	129100159	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020704.2	+1	validated	p.I474	1.000	87	0%	35	22.9%	0	-	-	-	-	NULL
FAM40B	57464	genome.wustl.edu	37	7	129107283	129107283	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020704.2	+1	validated	p.A623	1.000	117	0%	64	26.6%	1	100%	-	-	-	NULL
FAM40B	57464	genome.wustl.edu	37	7	129125494	129125494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020704.2	+1	validated	p.R777C	1.000	170	1.8%	106	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NRF1	4899	genome.wustl.edu	37	7	129357135	129357135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040110.1	+1	reviewed	p.A381V	1.000	130	0%	58	22.4%	19	57.8%	benign(0.355)	deleterious(0.04)	neutral(0.461)	NULL
KLHDC10	23008	genome.wustl.edu	37	7	129736818	129736818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014997.2	+1	validated	p.I75T	1.000	192	0%	149	10.7%	2	50%	benign(0)	tolerated(0.86)	neutral(0.001)	superfamily_Galactose oxidase central domain
KLHDC10	23008	genome.wustl.edu	37	7	129764376	129764376	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014997.2	+1	validated	e6+1	1.000	228	0%	121	28.9%	0	-	-	-	-	-
KLHDC10	23008	genome.wustl.edu	37	7	129767243	129767243	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014997.2	+1	validated	e8-1	1.000	203	0%	146	24%	0	-	-	-	-	-
CPA5	93979	genome.wustl.edu	37	7	129999525	129999525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127441.1	+1	validated	p.E143D	0.995	19	0%	12	33.3%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
CPA1	1357	genome.wustl.edu	37	7	130021497	130021497	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001868.2	+1	reviewed	p.H58	0.000	66	0%	35	17.1%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Prot_inh_propept
CEP41	95681	genome.wustl.edu	37	7	130044447	130044447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018718.1	-1	provisional	p.N127S	0.831	254	0%	143	29.4%	5	40%	benign(0)	tolerated(0.54)	neutral(0.007)	superfamily_Rhodanese/Cell cycle control phosphatase
MEST	4232	genome.wustl.edu	37	7	130144807	130144807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437945	+1	known	p.R285Q	0.996	250	0%	169	25.4%	153	40.5%	unknown(0)	-	-	NULL
PODXL	5420	genome.wustl.edu	37	7	131191043	131191043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018111.2	-1	reviewed	p.K429N	0.986	118	0%	66	27.3%	23	39.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CD34_antigen
PODXL	5420	genome.wustl.edu	37	7	131195587	131195587	+	Missense_Mutation	SNP	G	G	A	rs184433959	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005397.3	-1	reviewed	p.P236S	0.131	65	0%	29	44.8%	23	21.7%	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	NULL
LOC647030	647030	genome.wustl.edu	37	7	131347197	131347197	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017470.3	-1	model	NULL	0.906	382	0.3%	208	29.3%	5	0%	-	-	-	-
PLXNA4	91584	genome.wustl.edu	37	7	131887519	131887519	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.G824	1.000	29	0%	20	40%	0	-	-	-	-	HMMPfam_PSI,HMMSmart_SM00423
PLXNA4	91584	genome.wustl.edu	37	7	132169765	132169765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181775.3	-1	validated	p.G460D	0.000	358	0%	186	21%	0	-	possibly_damaging(0.528)	tolerated(0.07)	deleterious(0.497)	HMMSmart_Sema,superfamily_Sema
PLXNA4	91584	genome.wustl.edu	37	7	132192342	132192342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.L371M	1.000	99	0%	40	22.5%	0	-	benign(0.026)	deleterious(0.01)	neutral(0.407)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
PLXNA4	91584	genome.wustl.edu	37	7	132192804	132192804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.V217I	1.000	207	0%	106	26.4%	0	-	possibly_damaging(0.916)	tolerated(0.23)	neutral(0.408)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
CHCHD3	54927	genome.wustl.edu	37	7	132481251	132481251	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017812.2	-1	provisional	p.C204*	1.000	360	0%	255	31.4%	60	43.3%	-	-	-	HMMPfam_CHCH
LRGUK	136332	genome.wustl.edu	37	7	133842866	133842866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144648.1	+1	provisional	p.T250M	0.005	139	0%	61	42.6%	2	50%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_LRR_1,superfamily_SSF52058
LRGUK	136332	genome.wustl.edu	37	7	133863332	133863332	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144648.1	+1	provisional	p.S395	0.694	353	0%	211	23.7%	2	50%	-	-	-	NULL
LRGUK	136332	genome.wustl.edu	37	7	133948608	133948608	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144648.1	+1	provisional	p.Q787*	0.000	271	0.4%	200	23.5%	2	0%	-	-	-	NULL
WDR91	29062	genome.wustl.edu	37	7	134871854	134871854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014149.3	-1	validated	p.T650M	1.000	127	0%	81	24.7%	18	22.2%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_WD40 repeat-like
WDR91	29062	genome.wustl.edu	37	7	134878103	134878103	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014149.3	-1	validated	p.S513	0.701	78	0%	42	23.8%	15	40%	-	-	-	superfamily_WD40 repeat-like
NUP205	23165	genome.wustl.edu	37	7	135298996	135298996	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	p.L1095	1.000	154	0%	89	25.8%	14	35.7%	-	-	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135310092	135310092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	p.E1554K	1.000	318	0%	168	25.6%	46	43.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGKI	9162	genome.wustl.edu	37	7	137330260	137330260	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004717.2	-1	reviewed	p.V254	0.998	116	0%	79	21.5%	0	-	-	-	-	HMMPfam_C1_1,HMMSmart_C1
CREB3L2	64764	genome.wustl.edu	37	7	137567316	137567316	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194071.2	-1	validated	p.S443	0.086	143	0%	75	33.3%	10	20%	-	-	-	NULL
KIAA1549	57670	genome.wustl.edu	37	7	138602290	138602290	+	Silent	SNP	C	C	T	rs146280134	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020910.2	-1	validated	p.S644	0.002	262	0.4%	134	27.6%	13	46.1%	-	-	-	NULL
UBN2	254048	genome.wustl.edu	37	7	138968318	138968318	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173569.3	+1	validated	p.T806	1.000	455	0%	303	35%	10	50%	-	-	-	NULL
UBN2	254048	genome.wustl.edu	37	7	138968337	138968337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173569.3	+1	validated	p.H813Y	0.999	443	0%	290	23.8%	16	50%	possibly_damaging(0.925)	tolerated(0.08)	deleterious(0.673)	NULL
UBN2	254048	genome.wustl.edu	37	7	138968821	138968821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173569.3	+1	validated	p.P974H	0.999	458	0%	308	24.4%	13	38.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HIPK2	28996	genome.wustl.edu	37	7	139297986	139297986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000263551	-1	known	p.A692T	1.000	114	0%	66	15.2%	3	0%	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
PARP12	64761	genome.wustl.edu	37	7	139754553	139754553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491598	-1	known	p.T4I	0.095	327	0%	177	15.8%	18	22.2%	-	-	-	NULL
JHDM1D	80853	genome.wustl.edu	37	7	139791617	139791617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030647.1	-1	validated	p.N906K	1.000	372	0.5%	186	27.4%	7	28.5%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
SLC37A3	84255	genome.wustl.edu	37	7	140035166	140035166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032295.2	-1	validated	p.P410L	0.000	493	0.2%	216	30.6%	42	35.7%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
BRAF	673	genome.wustl.edu	37	7	140482853	140482853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.S428T	1.000	136	0%	101	23.8%	9	22.2%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
BRAF	673	genome.wustl.edu	37	7	140508718	140508718	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.C194*	1.000	226	0%	148	26.4%	10	10%	-	-	-	HMMPfam_RBD,HMMSmart_SM00455,superfamily_Ubiquitin-like
BRAF	673	genome.wustl.edu	37	7	140549961	140549961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004333.4	-1	reviewed	p.L64I	1.000	767	0%	574	25.1%	1	0%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
WEE2	494551	genome.wustl.edu	37	7	141430108	141430108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105558.1	+1	validated	p.E564D	0.000	258	0%	153	23.5%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
WEE2	494551	genome.wustl.edu	37	7	141430118	141430118	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105558.1	+1	validated	p.*568Q	0.002	256	0%	158	29.7%	0	-	-	-	-	NULL
SSBP1	6742	genome.wustl.edu	37	7	141445296	141445296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003143.1	+1	validated	p.G105	1.000	298	0%	185	23.8%	266	48.8%	-	-	-	HMMPfam_SSB,superfamily_Nucleic acid-binding proteins
TAS2R4	50832	genome.wustl.edu	37	7	141479039	141479039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016944.1	+1	reviewed	p.L251I	0.002	394	0%	199	12.1%	0	-	possibly_damaging(0.432)	tolerated(0.2)	neutral(0.190)	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R5	54429	genome.wustl.edu	37	7	141490186	141490186	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018980.2	+1	reviewed	p.L9	0.934	147	0%	93	26.9%	1	0%	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R5	54429	genome.wustl.edu	37	7	141490501	141490501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018980.2	+1	reviewed	p.A114T	0.000	290	0%	143	21.7%	3	0%	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R38	5726	genome.wustl.edu	37	7	141673468	141673468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176817.4	-1	reviewed	p.R8C	0.000	385	0%	218	27.5%	0	-	benign(0.002)	tolerated(0.21)	neutral(0.044)	NULL
MGAM	8972	genome.wustl.edu	37	7	141727524	141727524	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.Q404*	0.005	106	0%	69	18.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
MGAM	8972	genome.wustl.edu	37	7	141736694	141736694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.R716	1.000	638	0.3%	561	29.8%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
TRBV7-1	28597	genome.wustl.edu	37	7	142032463	142032463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390354	+1	known	p.T95A	0.000	136	0%	65	16.9%	0	-	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	HMMPfam_V-set,superfamily_SSF48726
TRBV5-5	28610	genome.wustl.edu	37	7	142149146	142149146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390372	-1	known	p.C42Y	0.007	634	0%	341	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV5-3	28612	genome.wustl.edu	37	7	142242455	142242455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390362	-1	known	p.A57T	0.000	221	0%	158	22.2%	0	-	benign(0.003)	tolerated(0.89)	-	HMMPfam_V-set,superfamily_SSF48726
TRBV20-1	28567	genome.wustl.edu	37	7	142334691	142334691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390394	+1	known	p.R38H	0.001	197	0%	154	27.9%	2	0%	probably_damaging(0.995)	tolerated(0.4)	deleterious(0.474)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TRBV24-1	28563	genome.wustl.edu	37	7	142364697	142364697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390397	+1	known	p.A111V	0.939	406	0%	217	30%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_V-set,superfamily_SSF48726
TRBV28	28559	genome.wustl.edu	37	7	142428534	142428534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390400	+1	known	p.F11V	0.749	40	0%	40	32.5%	1	0%	benign(0.199)	deleterious(0.04)	neutral(0.368)	NULL
TRBV29-1	28558	genome.wustl.edu	37	7	142448571	142448571	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422143	+1	known	p.G55	0.074	214	0%	152	24.3%	2	0%	-	-	-	HMMPfam_V-set,superfamily_SSF48726
EPHB6	2051	genome.wustl.edu	37	7	142562166	142562166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004445.3	+1	reviewed	p.P203H	0.999	108	0%	32	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
EPHB6	2051	genome.wustl.edu	37	7	142568310	142568310	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004445.3	+1	reviewed	p.V943	0.996	180	0%	75	26.7%	2	0%	-	-	-	NULL
TRPV6	55503	genome.wustl.edu	37	7	142575033	142575033	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018646.2	-1	validated	e4-1	1.000	179	0%	88	26.1%	0	-	-	-	-	-
KEL	3792	genome.wustl.edu	37	7	142640125	142640125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000420.2	-1	reviewed	p.P593L	0.995	368	0%	196	32.7%	1	0%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
OR9A2	135924	genome.wustl.edu	37	7	142723990	142723990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001658.1	-1	provisional	p.V77A	0.003	417	0%	197	24.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6V1	346517	genome.wustl.edu	37	7	142750215	142750215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001667.1	+1	provisional	p.P260T	0.009	337	0%	192	30.2%	0	-	benign(0.047)	tolerated(0.17)	neutral(0.062)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR6V1	346517	genome.wustl.edu	37	7	142750304	142750304	+	Silent	SNP	C	C	A	rs4725609		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001667.1	+1	provisional	p.T289	0.000	218	0%	103	21.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
GSTK1	373156	genome.wustl.edu	37	7	142962171	142962171	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143679.1	+1	reviewed	p.R124C	1.000	141	0%	62	33.9%	241	29.8%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	HMMPfam_DSBA,superfamily_Thiordxn-like_fd
GSTK1	373156	genome.wustl.edu	37	7	142965913	142965913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143679.1	+1	reviewed	p.V278M	0.000	133	0%	89	25.8%	299	33.1%	possibly_damaging(0.502)	tolerated(0.17)	neutral(0.227)	superfamily_Thiordxn-like_fd
ZYX	7791	genome.wustl.edu	37	7	143080170	143080170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010972.1	+1	reviewed	p.P260T	0.178	174	0.6%	82	23.2%	106	14.1%	possibly_damaging(0.943)	tolerated(0.07)	deleterious(0.707)	NULL
EPHA1	2041	genome.wustl.edu	37	7	143090930	143090930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005232.4	-1	reviewed	p.R844W	1.000	79	0%	39	48.7%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA1	2041	genome.wustl.edu	37	7	143092412	143092412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005232.4	-1	reviewed	p.R695*	0.993	835	0%	364	22.5%	5	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
EPHA1	2041	genome.wustl.edu	37	7	143095454	143095454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005232.4	-1	reviewed	p.P475H	0.255	148	0%	56	21.4%	2	50%	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FAM115C	285966	genome.wustl.edu	37	7	143417125	143417125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130025.1	+1	validated	p.P325S	0.040	117	0%	54	18.5%	0	-	benign(0.154)	tolerated(0.78)	neutral(0.014)	NULL
OR2A12	346525	genome.wustl.edu	37	7	143792262	143792262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004135.1	+1	provisional	p.A21V	0.000	324	0%	210	32.4%	0	-	benign(0.035)	tolerated(0.22)	neutral(0.044)	superfamily_Family A G protein-coupled receptor-like
OR2A12	346525	genome.wustl.edu	37	7	143792828	143792828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004135.1	+1	provisional	p.L210I	0.829	475	0%	309	23.3%	0	-	benign(0.372)	tolerated(0.14)	neutral(0.368)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A42	402317	genome.wustl.edu	37	7	143929691	143929691	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001802.1	-1	provisional	p.A76	0.000	623	0%	329	17.9%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A42	402317	genome.wustl.edu	37	7	143929915	143929915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001802.1	-1	provisional	p.V2I	0.003	692	0%	429	6.5%	0	-	benign(0.006)	tolerated(0.3)	neutral(0.029)	superfamily_Family A G protein-coupled receptor-like
ARHGEF5	7984	genome.wustl.edu	37	7	144069454	144069454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.R1303H	1.000	488	0%	258	9.7%	25	8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TPK1	27010	genome.wustl.edu	37	7	144364830	144364830	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378099	-1	known	p.I53	0.000	229	0%	173	27.2%	0	-	unknown(0)	-	-	superfamily_TPK_catalytic
CNTNAP2	26047	genome.wustl.edu	37	7	146741083	146741083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.P163S	1.000	322	0%	212	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
CNTNAP2	26047	genome.wustl.edu	37	7	146829412	146829412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.P387T	0.808	249	0%	150	30.7%	0	-	benign(0.309)	deleterious(0.02)	deleterious(0.480)	superfamily_Concanavalin A-like lectins/glucanases
CNTNAP2	26047	genome.wustl.edu	37	7	147259310	147259310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.G620R	1.000	395	0%	254	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibrinogen C-terminal domain-like,superfamily_Concanavalin A-like lectins/glucanases
CNTNAP2	26047	genome.wustl.edu	37	7	147844726	147844726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.R900W	1.000	128	0%	61	23%	0	-	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
EZH2	2146	genome.wustl.edu	37	7	148507450	148507450	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004456.3	-1	reviewed	p.C668	1.000	197	0%	96	21.9%	19	26.3%	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
ZNF425	155054	genome.wustl.edu	37	7	148802086	148802086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001661.2	-1	validated	p.L293M	0.756	57	0%	41	26.8%	3	66.6%	benign(0.029)	tolerated(0.26)	neutral(0.036)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF777	27153	genome.wustl.edu	37	7	149152470	149152470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015694.2	-1	validated	p.T215I	1.000	119	0%	73	34.2%	29	44.8%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	NULL
ATP6V0E2	155066	genome.wustl.edu	37	7	149572715	149572715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100592.1	+1	validated	p.A94T	0.949	75	0%	32	15.6%	51	52.9%	possibly_damaging(0.435)	deleterious(0.01)	deleterious(0.547)	HMMPfam_ATP_synt_H
GIMAP4	55303	genome.wustl.edu	37	7	150269563	150269563	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466938	+1	known	e3-1	0.000	405	0%	289	28.4%	15	0%	-	-	-	-
GIMAP4	55303	genome.wustl.edu	37	7	150269637	150269637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018326.2	+1	reviewed	p.G160V	0.000	489	0%	349	31.8%	21	0%	benign(0.017)	tolerated(0.07)	neutral(0.320)	HMMPfam_AIG1,superfamily_SSF52540
GIMAP6	474344	genome.wustl.edu	37	7	150325473	150325473	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000477013	-1	known	e2+2	0.004	370	0%	198	24.2%	2	0%	-	-	-	-
GIMAP6	474344	genome.wustl.edu	37	7	150325594	150325594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024711.4	-1	reviewed	p.R31M	0.000	425	0%	218	22.5%	2	0%	probably_damaging(0.965)	tolerated(0.08)	deleterious(0.707)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK5	1020	genome.wustl.edu	37	7	150751365	150751365	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004935.3	-1	validated	p.Y242	1.000	40	0%	17	35.3%	52	42.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SLC4A2	6522	genome.wustl.edu	37	7	150761679	150761679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.R95H	1.000	26	0%	12	33.3%	42	50%	probably_damaging(0.994)	tolerated(0.24)	deleterious(0.489)	NULL
SLC4A2	6522	genome.wustl.edu	37	7	150767339	150767339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.G452E	0.854	62	0%	29	27.6%	54	42.5%	benign(0.344)	tolerated(0.19)	neutral(0.158)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
AGAP3	116988	genome.wustl.edu	37	7	150838996	150838996	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031946.4	+1	validated	p.S606T	0.995	97	0%	37	32.4%	45	33.3%	benign(0.051)	tolerated(0.42)	neutral(0.017)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ABCF2	10061	genome.wustl.edu	37	7	150918679	150918679	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005692.3	-1	reviewed	p.K302N	1.000	493	0.2%	254	14.6%	61	14.7%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMSmart_AAA,superfamily_SSF52540
ABCF2	10061	genome.wustl.edu	37	7	150921885	150921885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005692.3	-1	reviewed	p.G115D	1.000	122	0%	89	30.3%	45	51.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
CHPF2	54480	genome.wustl.edu	37	7	150935182	150935182	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019015.1	+1	provisional	p.D578	0.974	28	0%	12	33.3%	57	29.8%	-	-	-	HMMPfam_CHGN
SMARCD3	6604	genome.wustl.edu	37	7	150936754	150936754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003801.1	-1	reviewed	p.G418C	1.000	117	0%	35	20%	14	21.4%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
RHEB	6009	genome.wustl.edu	37	7	151181890	151181890	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005614.3	-1	reviewed	p.T42N	1.000	106	0%	54	22.2%	150	46.6%	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
MLL3	58508	genome.wustl.edu	37	7	151842308	151842308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.A4702T	1.000	327	0%	197	36.5%	27	44.4%	unknown(0)	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151949035	151949035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.E537G	0.931	153	0%	108	20.4%	4	25%	benign(0.073)	-	-	NULL
DPP6	1804	genome.wustl.edu	37	7	154593073	154593073	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377770	+1	known	p.E436	1.000	23	0%	18	38.9%	5	0%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP6	1804	genome.wustl.edu	37	7	154672634	154672634	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377770	+1	known	p.R705	0.863	117	0%	59	10.2%	7	0%	-	-	-	HMMPfam_Peptidase_S9,superfamily_alpha/beta-Hydrolases
PAXIP1	22976	genome.wustl.edu	37	7	154768033	154768033	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.Y149	0.985	310	0%	159	30.2%	9	44.4%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
EN2	2020	genome.wustl.edu	37	7	155255124	155255124	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001427.3	+1	reviewed	p.R248	0.987	73	0%	26	34.6%	2	0%	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
NOM1	64434	genome.wustl.edu	37	7	156746859	156746859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138400.1	+1	provisional	p.S392N	1.000	229	0%	131	29%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
UBE3C	9690	genome.wustl.edu	37	7	156974362	156974362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014671.2	+1	validated	p.A256V	1.000	241	0%	135	20%	31	35.4%	benign(0.002)	tolerated(0.7)	neutral(0.002)	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158468349	158468349	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017760.5	-1	validated	e11-1	1.000	158	0%	92	12%	0	-	-	-	-	-
ESYT2	57488	genome.wustl.edu	37	7	158531755	158531755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020728.2	-1	validated	p.S769R	1.000	58	0%	41	26.8%	44	27.2%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_C2_CaLB
ESYT2	57488	genome.wustl.edu	37	7	158580723	158580723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020728.2	-1	validated	p.A288D	1.000	535	0%	333	25.8%	30	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR60	55112	genome.wustl.edu	37	7	158719713	158719713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018051.4	+1	validated	p.A822T	0.947	59	1.7%	35	28.6%	12	16.6%	possibly_damaging(0.879)	tolerated(0.16)	neutral(0.402)	superfamily_WD40 repeat-like
WDR60	55112	genome.wustl.edu	37	7	158734740	158734740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018051.4	+1	validated	p.A968V	0.983	79	0%	60	13.3%	7	57.1%	possibly_damaging(0.879)	deleterious(0.04)	deleterious(0.692)	HMMSmart_SM00320,superfamily_WD40 repeat-like
C8orf42	157695	genome.wustl.edu	37	8	442495	442495	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175075.3	-1	validated	p.N154	0.780	46	0%	17	29.4%	1	0%	-	-	-	NULL
ERICH1	157697	genome.wustl.edu	37	8	623533	623533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207332.1	-1	provisional	p.D273	0.000	137	0.7%	61	34.4%	10	60%	-	-	-	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1574929	1574929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.S409I	0.928	18	0%	15	26.7%	0	-	benign(0.196)	tolerated(0.11)	neutral(0.290)	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1842620	1842620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.T441M	0.964	61	0%	34	20.6%	4	0%	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ARHGEF10	9639	genome.wustl.edu	37	8	1844558	1844558	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.A500	0.018	188	0%	103	33%	6	33.3%	-	-	-	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
ARHGEF10	9639	genome.wustl.edu	37	8	1853882	1853882	+	Missense_Mutation	SNP	G	G	A	rs184791801	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.R656H	1.000	96	0%	61	42.6%	3	0%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_SSF50729
ARHGEF10	9639	genome.wustl.edu	37	8	1876648	1876648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.S918Y	1.000	355	0.6%	142	32.4%	8	37.5%	possibly_damaging(0.893)	deleterious(0.03)	deleterious(0.716)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2063802	2063802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.M1077I	1.000	252	0%	139	30.2%	0	-	benign(0.069)	tolerated(0.46)	neutral(0.017)	NULL
MYOM2	9172	genome.wustl.edu	37	8	2071481	2071481	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.G1207	0.903	657	0%	335	22.1%	0	-	-	-	-	superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2077194	2077194	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.D1258	0.826	264	0.4%	155	22.6%	0	-	-	-	-	superfamily_SSF48726
MYOM2	9172	genome.wustl.edu	37	8	2088702	2088702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.A1286D	1.000	310	0.3%	122	23%	1	0%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	superfamily_SSF48726
CSMD1	64478	genome.wustl.edu	37	8	2886930	2886930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S2590N	0.899	125	0%	66	28.8%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD1	64478	genome.wustl.edu	37	8	3046492	3046492	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.L1815M	0.186	104	0%	68	27.9%	0	-	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3224756	3224756	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.I972	0.016	78	0%	52	13.5%	1	0%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3351156	3351156	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S480	0.069	70	0%	47	27.7%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3889474	3889474	+	Missense_Mutation	SNP	C	C	A	rs36042022		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.S188I	0.998	104	0%	59	27.1%	0	-	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
MCPH1	79648	genome.wustl.edu	37	8	6302907	6302907	+	Missense_Mutation	SNP	C	C	T	rs188726432	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024596.3	+1	reviewed	p.A555V	0.000	282	0%	166	19.3%	26	7.6%	benign(0.002)	tolerated(0.39)	neutral(0.016)	NULL
AGPAT5	55326	genome.wustl.edu	37	8	6612617	6612617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018361.3	+1	reviewed	p.R264H	1.000	81	0%	61	26.2%	44	40.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF69593
FAM90A20P	728430	genome.wustl.edu	37	8	7155242	7155242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360191	+1	known	p.P364L	0.001	24	4.2%	11	36.4%	0	-	-	-	-	NULL
ENSG00000164845	0	genome.wustl.edu	37	8	8093785	8093785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338711	+1	known	p.R235C	0.278	27	0%	10	60%	0	-	-	-	-	HMMPfam_Methyltransf_16,superfamily_SSF53335
SGK223	157285	genome.wustl.edu	37	8	8185481	8185481	+	Silent	SNP	G	G	A	rs142121457	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080826.1	-1	validated	p.H937	1.000	96	0%	45	35.6%	5	80%	-	-	-	NULL
PPP1R3B	79660	genome.wustl.edu	37	8	8998502	8998502	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024607.2	-1	validated	p.T220	0.000	184	0%	92	32.6%	7	42.8%	-	-	-	HMMPfam_CBM_21
TNKS	8658	genome.wustl.edu	37	8	9627686	9627686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003747.2	+1	validated	p.A1271T	1.000	18	0%	16	50%	23	34.7%	possibly_damaging(0.536)	deleterious(0)	deleterious(0.625)	HMMPfam_PARP,superfamily_ADP-ribosylation
PRSS55	203074	genome.wustl.edu	37	8	10387101	10387101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198464.2	+1	validated	p.P80L	0.989	495	0%	229	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
RP1L1	94137	genome.wustl.edu	37	8	10464422	10464422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.D2396Y	0.714	575	0%	294	10.9%	0	-	unknown(0)	deleterious(0)	-	NULL
RP1L1	94137	genome.wustl.edu	37	8	10466500	10466500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.G1703E	0.000	182	0%	88	28.4%	1	0%	unknown(0)	tolerated(0.31)	-	NULL
RP1L1	94137	genome.wustl.edu	37	8	10474035	10474035	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.A224	0.999	66	0%	29	24.1%	0	-	-	-	-	HMMPfam_DCX,superfamily_SSF89837
PINX1	54984	genome.wustl.edu	37	8	10623136	10623136	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017884.4	-1	provisional	p.S254	0.000	146	0%	72	26.4%	16	50%	-	-	-	NULL
PINX1	54984	genome.wustl.edu	37	8	10690468	10690468	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017884.4	-1	provisional	p.A52	1.000	71	0%	30	33.3%	18	55.5%	-	-	-	HMMPfam_G-patch,HMMSmart_SM00443
XKR6	286046	genome.wustl.edu	37	8	10755858	10755858	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382461	-1	known	p.A287V	1.000	152	0%	86	36%	0	-	-	-	-	NULL
MTMR9	66036	genome.wustl.edu	37	8	11157611	11157611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015458.3	+1	reviewed	p.W124*	1.000	482	0%	358	27.4%	3	33.3%	-	-	-	superfamily_SSF52799
BLK	640	genome.wustl.edu	37	8	11414312	11414312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001715.2	+1	validated	p.E306D	1.000	89	0%	34	11.8%	0	-	possibly_damaging(0.495)	deleterious(0.02)	deleterious(0.548)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
USP17L7	392197	genome.wustl.edu	37	8	11990137	11990137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416902	-1	known	p.P461L	0.191	156	0.6%	98	33.7%	0	-	-	-	-	NULL
USP17L7	392197	genome.wustl.edu	37	8	11990849	11990849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416902	-1	known	p.A224T	0.867	162	0%	97	30.9%	0	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
FAM86B2	653333	genome.wustl.edu	37	8	12291578	12291578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137610.1	-1	predicted	p.R48W	0.960	183	0%	113	22.1%	4	0%	benign(0.008)	tolerated(0.07)	neutral(0.319)	NULL
LONRF1	91694	genome.wustl.edu	37	8	12600704	12600704	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000284538	-1	known	p.Q2*	1.000	187	0%	129	12.4%	5	0%	benign(0.406)	tolerated(0.58)	neutral(0.136)	NULL
DLC1	10395	genome.wustl.edu	37	8	12957897	12957897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.S650N	1.000	195	0%	109	21.1%	1	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
SGCZ	137868	genome.wustl.edu	37	8	14095176	14095176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139167.2	-1	reviewed	p.V117I	1.000	1425	0.1%	990	29.1%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	HMMPfam_Sarcoglycan_1
MSR1	4481	genome.wustl.edu	37	8	15977963	15977963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138715.2	-1	reviewed	p.V396I	0.008	164	0%	99	13.1%	0	-	possibly_damaging(0.791)	deleterious(0.03)	deleterious(0.661)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CNOT7	29883	genome.wustl.edu	37	8	17100639	17100639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013354.5	-1	reviewed	p.A58V	1.000	338	0.6%	199	22.6%	96	37.5%	benign(0.02)	tolerated(0.32)	neutral(0.025)	HMMPfam_CAF1,superfamily_Ribonuclease H-like
VPS37A	137492	genome.wustl.edu	37	8	17132280	17132280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152415.2	+1	validated	p.S152Y	1.000	241	0%	117	27.4%	60	38.3%	benign(0.077)	tolerated(0.11)	neutral(0.277)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17400912	17400912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003046.5	+1	validated	p.L62M	0.002	98	0%	58	24.1%	10	30%	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
PSD3	23362	genome.wustl.edu	37	8	18725215	18725215	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.K535*	0.140	395	0%	262	13.7%	1	0%	-	-	-	NULL
PSD3	23362	genome.wustl.edu	37	8	18725389	18725389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.P477S	1.000	531	0%	349	25.5%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19263451	19263451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.R480H	0.998	287	0%	145	12.4%	7	0%	benign(0.003)	tolerated(0.54)	neutral(0.007)	HMMPfam_CHGN,superfamily_SSF53448
SLC18A1	6570	genome.wustl.edu	37	8	20008215	20008215	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135691.2	-1	validated	p.G352	1.000	322	0%	199	29.1%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLC18A1	6570	genome.wustl.edu	37	8	20036652	20036652	+	Silent	SNP	G	G	A	rs184315082	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135691.2	-1	validated	p.F156	0.007	156	0%	73	19.2%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ATP6V1B2	526	genome.wustl.edu	37	8	20068762	20068762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001693.3	+1	reviewed	p.M180V	1.000	281	0%	207	24.6%	45	37.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
LZTS1	11178	genome.wustl.edu	37	8	20107709	20107709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021020.2	-1	reviewed	p.A439T	0.749	114	0%	46	10.9%	1	0%	benign(0.001)	tolerated(0.87)	neutral(0.001)	HMMPfam_Fez1
FAM160B2	64760	genome.wustl.edu	37	8	21951960	21951960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022749.5	+1	validated	p.S19G	1.000	28	0%	17	47.1%	3	66.6%	possibly_damaging(0.762)	tolerated(0.06)	deleterious(0.605)	NULL
FAM160B2	64760	genome.wustl.edu	37	8	21955297	21955297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022749.5	+1	validated	p.V158I	0.985	41	0%	16	25%	11	90.9%	benign(0.001)	tolerated(0.56)	neutral(0.006)	HMMPfam_RAI16-like
FAM160B2	64760	genome.wustl.edu	37	8	21958174	21958174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022749.5	+1	validated	p.L471M	1.000	78	1.3%	38	28.9%	25	32%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RAI16-like
FAM160B2	64760	genome.wustl.edu	37	8	21958387	21958387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022749.5	+1	validated	p.S507I	1.000	118	0%	56	23.2%	28	53.5%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
BMP1	649	genome.wustl.edu	37	8	22052077	22052077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006129.4	+1	reviewed	p.V473M	1.000	177	0%	111	37.8%	12	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
BMP1	649	genome.wustl.edu	37	8	22054310	22054310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006129.4	+1	reviewed	p.R628H	1.000	75	0%	41	14.6%	18	0%	possibly_damaging(0.496)	tolerated(0.18)	neutral(0.222)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PIWIL2	55124	genome.wustl.edu	37	8	22161635	22161635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135721.1	+1	validated	p.R428H	1.000	381	0%	191	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAZ,superfamily_PAZ domain
SORBS3	10174	genome.wustl.edu	37	8	22429892	22429892	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005775.4	+1	validated	p.D629	0.897	42	0%	14	35.7%	26	15.3%	unknown(0)	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
KIAA1967	57805	genome.wustl.edu	37	8	22473683	22473683	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.A589	0.000	49	0%	21	33.3%	63	42.8%	-	-	-	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22862016	22862016	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015178.2	+1	validated	p.N23	1.000	82	0%	56	46.4%	4	75%	-	-	-	HMMSmart_RHO,superfamily_SSF52540
RHOBTB2	23221	genome.wustl.edu	37	8	22864603	22864603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015178.2	+1	validated	p.K282T	1.000	190	0%	67	29.9%	2	50%	benign(0.362)	deleterious(0.01)	deleterious(0.521)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
RHOBTB2	23221	genome.wustl.edu	37	8	22865171	22865171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015178.2	+1	validated	p.E471D	1.000	227	0%	97	36.1%	5	20%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
LOXL2	4017	genome.wustl.edu	37	8	23225567	23225567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002318.2	-1	reviewed	p.L100M	1.000	53	0%	38	28.9%	8	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
ADAM28	10863	genome.wustl.edu	37	8	24167700	24167700	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014265.4	+1	reviewed	p.T84	0.018	241	0%	162	29.6%	47	44.6%	-	-	-	HMMPfam_Pep_M12B_propep
ADAM28	10863	genome.wustl.edu	37	8	24168892	24168892	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014265.4	+1	reviewed	p.G109*	1.000	200	0%	166	10.2%	36	2.7%	-	-	-	HMMPfam_Pep_M12B_propep
ADAM7	8756	genome.wustl.edu	37	8	24324535	24324535	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441335	+1	known	p.K205fs	0.009	-	-	-	-	-	-	-	-	-	NULL
ADAM7	8756	genome.wustl.edu	37	8	24346745	24346745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	p.C389R	0.959	149	0%	109	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
DOCK5	80005	genome.wustl.edu	37	8	25203082	25203082	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444569	+1	known	p.A675T	0.082	459	0%	232	34.1%	19	26.3%	-	-	-	NULL
DOCK5	80005	genome.wustl.edu	37	8	25224475	25224475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024940.6	+1	validated	p.K1071N	1.000	125	0%	88	34.1%	35	51.4%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
KCTD9	54793	genome.wustl.edu	37	8	25296809	25296809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017634.2	-1	validated	p.G162D	1.000	122	0%	86	25.6%	5	20%	possibly_damaging(0.731)	tolerated(0.43)	neutral(0.281)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
CDCA2	157313	genome.wustl.edu	37	8	25364888	25364888	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152562.2	+1	validated	p.N902	0.000	717	0.3%	516	33.9%	15	46.6%	-	-	-	NULL
EBF2	64641	genome.wustl.edu	37	8	25718642	25718642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022659.2	-1	validated	p.S422N	1.000	257	0%	132	25.8%	0	-	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
EBF2	64641	genome.wustl.edu	37	8	25902322	25902322	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022659.2	-1	validated	p.S18	0.956	218	0.5%	116	31.9%	0	-	-	-	-	NULL
PPP2R2A	5520	genome.wustl.edu	37	8	26220317	26220317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002717.3	+1	reviewed	p.R252Q	1.000	110	0%	76	17.1%	64	37.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DPYSL2	1808	genome.wustl.edu	37	8	26501002	26501002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001386.4	+1	validated	p.G287S	1.000	249	0%	170	31.8%	11	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
TRIM35	23087	genome.wustl.edu	37	8	27156001	27156001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_171982.3	-1	validated	p.A171T	1.000	173	0%	113	29.2%	6	50%	benign(0.013)	tolerated(0.15)	neutral(0.241)	NULL
PTK2B	2185	genome.wustl.edu	37	8	27288924	27288924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.N274D	1.000	97	0%	57	28.1%	4	0%	possibly_damaging(0.701)	tolerated(0.06)	deleterious(0.575)	NULL
CLU	1191	genome.wustl.edu	37	8	27463925	27463925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001831.2	-1	reviewed	p.C173	1.000	180	0%	116	30.2%	560	16.6%	-	-	-	HMMPfam_Clusterin,PatternScan_CLUSTERIN_1,HMMSmart_CLb
C8orf80	389643	genome.wustl.edu	37	8	27888881	27888881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010906.1	-1	provisional	p.G596D	0.000	307	0%	162	32.7%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
ELP3	55140	genome.wustl.edu	37	8	28017928	28017928	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018091.5	+1	validated	p.S480	1.000	107	0%	77	44.2%	156	42.3%	-	-	-	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
ZNF395	55893	genome.wustl.edu	37	8	28217136	28217136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018660.2	-1	validated	p.V149A	0.997	82	0%	37	35.1%	9	100%	possibly_damaging(0.792)	tolerated(0.07)	deleterious(0.616)	NULL
ZNF395	55893	genome.wustl.edu	37	8	28217229	28217229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018660.2	-1	validated	p.R118M	0.043	89	1.1%	34	23.5%	12	100%	possibly_damaging(0.855)	deleterious(0)	deleterious(0.774)	NULL
FZD3	7976	genome.wustl.edu	37	8	28385274	28385274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017412.2	+1	reviewed	p.A333T	1.000	480	0%	357	34.2%	16	56.2%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_Frizzled
EXTL3	2137	genome.wustl.edu	37	8	28588739	28588739	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001440.2	+1	provisional	e2-1	1.000	647	0.3%	363	29.2%	0	-	-	-	-	-
HMBOX1	79618	genome.wustl.edu	37	8	28876343	28876343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135726.1	+1	validated	p.P255L	1.000	231	0.4%	157	29.9%	5	60%	possibly_damaging(0.671)	tolerated(0.21)	neutral(0.282)	NULL
TMEM66	51669	genome.wustl.edu	37	8	29924354	29924354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016127.4	-1	provisional	p.P261T	0.998	433	0%	292	14%	321	16.1%	probably_damaging(0.991)	tolerated(0.24)	deleterious(0.481)	HMMPfam_DUF1183
GSR	2936	genome.wustl.edu	37	8	30541674	30541674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000637.2	-1	validated	p.F362I	1.000	441	0%	314	27.4%	182	47.8%	possibly_damaging(0.838)	deleterious(0)	deleterious(0.764)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
GSR	2936	genome.wustl.edu	37	8	30553989	30553989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000637.2	-1	validated	p.V235I	1.000	264	0%	188	26.1%	195	40.5%	benign(0.07)	deleterious(0.05)	neutral(0.350)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
PPP2CB	5516	genome.wustl.edu	37	8	30655267	30655267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009552.1	-1	reviewed	p.R106C	1.000	62	0%	44	36.4%	139	46.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
TEX15	56154	genome.wustl.edu	37	8	30700676	30700676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.T1953N	0.002	273	0%	169	27.2%	0	-	possibly_damaging(0.727)	tolerated(0.05)	deleterious(0.610)	NULL
TEX15	56154	genome.wustl.edu	37	8	30701484	30701484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.P1684T	0.750	276	0%	151	22.5%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TEX15	56154	genome.wustl.edu	37	8	30701747	30701747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.S1596L	0.000	268	0.4%	170	26.5%	0	-	benign(0.281)	deleterious(0)	deleterious(0.530)	NULL
WRN	7486	genome.wustl.edu	37	8	30922535	30922535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000553.4	+1	reviewed	p.K154E	0.994	298	0%	192	32.3%	4	25%	possibly_damaging(0.554)	deleterious(0)	deleterious(0.633)	HMMPfam_3_5_exonuc,HMMSmart_SM00474,superfamily_Ribonuclease H-like
WRN	7486	genome.wustl.edu	37	8	30974022	30974022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000553.4	+1	reviewed	p.R809M	0.526	214	0%	141	28.4%	5	60%	benign(0.018)	deleterious(0.03)	neutral(0.365)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
NRG1	3084	genome.wustl.edu	37	8	32463094	32463094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013956.3	+1	reviewed	p.R98H	1.000	432	0%	384	24.2%	0	-	benign(0.033)	tolerated(0.27)	neutral(0.035)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
NRG1	3084	genome.wustl.edu	37	8	32474395	32474395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013956.3	+1	reviewed	p.T165N	1.000	144	0%	117	20.5%	0	-	probably_damaging(0.967)	tolerated(0.06)	deleterious(0.732)	NULL
NRG1	3084	genome.wustl.edu	37	8	32505285	32505285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013959.3	+1	reviewed	p.S17P	1.000	103	0%	59	27.1%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
NRG1	3084	genome.wustl.edu	37	8	32585547	32585547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013956.3	+1	reviewed	p.E195K	1.000	284	0%	194	27.8%	0	-	benign(0.308)	tolerated(0.2)	neutral(0.145)	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196
FUT10	84750	genome.wustl.edu	37	8	33247268	33247268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032664.3	-1	validated	p.H142R	1.000	260	0%	135	28.9%	9	44.4%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Glyco_transf_10
RNF122	79845	genome.wustl.edu	37	8	33407002	33407002	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024787.2	-1	reviewed	p.C93	0.860	80	0%	47	29.8%	32	62.5%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
BRF2	55290	genome.wustl.edu	37	8	37704630	37704630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018310.2	-1	reviewed	p.A93V	0.978	162	0%	84	32.1%	28	21.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_CYCLIN,superfamily_Cyclin_like
RAB11FIP1	80223	genome.wustl.edu	37	8	37732418	37732418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002814.2	-1	validated	p.A413T	0.000	209	0.5%	91	20.9%	7	42.8%	benign(0.005)	tolerated(0.48)	neutral(0.011)	NULL
ASH2L	9070	genome.wustl.edu	37	8	37964580	37964580	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004674.3	+1	validated	p.A99	0.037	95	0%	54	25.9%	18	38.8%	-	-	-	NULL
DDHD2	23259	genome.wustl.edu	37	8	38110330	38110330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015214.2	+1	validated	p.R570W	1.000	140	0%	66	19.7%	29	48.2%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_DDHD
DDHD2	23259	genome.wustl.edu	37	8	38110489	38110489	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015214.2	+1	validated	p.L579V	0.996	185	0%	116	25%	25	68%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_DDHD
WHSC1L1	54904	genome.wustl.edu	37	8	38162250	38162250	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023034.1	-1	reviewed	p.C822*	0.993	293	0%	185	32.4%	9	22.2%	-	-	-	HMMSmart_SM00249
WHSC1L1	54904	genome.wustl.edu	37	8	38194895	38194895	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023034.1	-1	reviewed	p.T280P	1.000	181	0%	121	27.3%	21	28.5%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
LETM2	137994	genome.wustl.edu	37	8	38250201	38250201	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144652.1	+1	provisional	p.G16	0.202	130	0%	86	29.1%	0	-	-	-	-	NULL
FGFR1	2260	genome.wustl.edu	37	8	38285606	38285606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023110.2	-1	reviewed	p.A152T	0.998	121	0%	58	25.9%	69	42%	possibly_damaging(0.585)	tolerated(0.12)	neutral(0.462)	superfamily_Immunoglobulin
TACC1	6867	genome.wustl.edu	37	8	38677361	38677361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006283.2	+1	reviewed	p.S200N	0.000	166	0%	86	32.6%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
ADAM9	8754	genome.wustl.edu	37	8	38940234	38940234	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003816.2	+1	reviewed	p.G652	0.998	252	0%	163	20.2%	153	23.5%	-	-	-	HMMPfam_EGF_2
ADAM18	8749	genome.wustl.edu	37	8	39495176	39495176	+	Missense_Mutation	SNP	C	C	T	rs141094631	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014237.1	+1	reviewed	p.R261W	0.010	364	0%	271	30.3%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM2	2515	genome.wustl.edu	37	8	39607254	39607254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001464.3	-1	reviewed	p.N603D	0.000	138	0%	87	40.2%	1	0%	benign(0.002)	tolerated(0.79)	neutral(0.001)	HMMSmart_SM00608
AGPAT6	137964	genome.wustl.edu	37	8	41469726	41469726	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178819.3	+1	validated	p.I243	1.000	213	0%	122	32%	45	51.1%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_SM00563
PLAT	5327	genome.wustl.edu	37	8	42036494	42036494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000930.3	-1	reviewed	p.R484I	0.001	105	1%	57	29.8%	7	0%	benign(0.064)	tolerated(0.08)	neutral(0.304)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
POLB	5423	genome.wustl.edu	37	8	42206594	42206594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002690.1	+1	provisional	p.R83C	1.000	133	0%	72	25%	27	59.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_POLXc,superfamily_DNApol_B_N_like
SLC20A2	6575	genome.wustl.edu	37	8	42302227	42302227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006749.3	-1	provisional	p.A223T	0.779	70	0%	46	28.3%	19	36.8%	benign(0.186)	deleterious(0.01)	neutral(0.423)	HMMPfam_PHO4
THAP1	55145	genome.wustl.edu	37	8	42693242	42693242	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018105.2	-1	reviewed	p.R169*	1.000	156	0%	78	17.9%	32	34.3%	-	-	-	NULL
THAP1	55145	genome.wustl.edu	37	8	42694369	42694369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018105.2	-1	reviewed	p.A76D	1.000	185	0%	111	11.7%	30	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_THAP,HMMSmart_SM00692
HOOK3	84376	genome.wustl.edu	37	8	42805559	42805559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032410.3	+1	validated	p.E143D	0.995	397	0%	276	22.8%	3	0%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_HOOK
LOC100287980	100287980	genome.wustl.edu	37	8	48001224	48001224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342844.1	-1	model	p.A232V	0.004	28	0%	20	30%	0	-	-	-	-	NULL
ENSG00000215177	0	genome.wustl.edu	37	8	48114299	48114299	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399730	-1	known	p.T40	0.997	177	0.6%	109	33%	0	-	-	-	-	HMMPfam_V-set,superfamily_SSF48726
PRKDC	5591	genome.wustl.edu	37	8	48690334	48690334	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.Y3954C	0.962	132	0%	73	28.8%	116	13.7%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48691038	48691038	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.R3914H	0.000	50	0%	24	25%	103	11.6%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48713466	48713466	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081640.1	-1	validated	p.G3335*	0.001	105	0%	65	10.8%	39	56.4%	possibly_damaging(0.502)	tolerated(0.1)	neutral(0.454)	NULL
PRKDC	5591	genome.wustl.edu	37	8	48744484	48744484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.A2718V	0.000	237	0%	105	29.5%	26	11.5%	benign(0.002)	tolerated(0.29)	neutral(0.029)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48843269	48843269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.D619Y	1.000	35	0%	21	33.3%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
MCM4	4173	genome.wustl.edu	37	8	48882425	48882425	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005914.2	+1	reviewed	p.T414	1.000	257	0%	146	17.8%	68	33.8%	-	-	-	HMMSmart_MCM,superfamily_Nucleic_acid_OB
RB1CC1	9821	genome.wustl.edu	37	8	53589055	53589055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.G149D	1.000	160	0%	104	24%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OPRK1	4986	genome.wustl.edu	37	8	54142051	54142051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000912.3	-1	validated	p.A317T	1.000	76	1.3%	49	32.7%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_7tm_1,superfamily_SSF81321
OPRK1	4986	genome.wustl.edu	37	8	54147343	54147343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000912.3	-1	validated	p.L196I	1.000	183	0%	93	41.9%	2	50%	probably_damaging(0.982)	tolerated(0.07)	deleterious(0.746)	HMMPfam_7tm_1,superfamily_SSF81321
MRPL15	29088	genome.wustl.edu	37	8	55060154	55060154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014175.3	+1	reviewed	p.L256F	1.000	205	0%	103	35.9%	158	43%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
LYN	4067	genome.wustl.edu	37	8	56860208	56860208	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002350.2	+1	validated	p.A70	0.983	234	0%	143	11.9%	21	14.2%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
MOS	4342	genome.wustl.edu	37	8	57025909	57025909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005372.1	-1	validated	p.E211D	0.046	65	0%	37	10.8%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	superfamily_Kinase_like,HMMPfam_Pkinase
MOS	4342	genome.wustl.edu	37	8	57026185	57026185	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005372.1	-1	validated	p.R119	0.803	42	0%	19	63.2%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SDR16C5	195814	genome.wustl.edu	37	8	57228616	57228616	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138969.2	-1	validated	p.C97	0.972	350	0%	189	29.6%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
PENK	5179	genome.wustl.edu	37	8	57354491	57354491	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135690.1	-1	validated	p.C48	1.000	168	0.6%	76	25%	2	0%	-	-	-	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR
FAM110B	90362	genome.wustl.edu	37	8	59059110	59059110	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147189.2	+1	validated	p.T107	0.878	46	0%	20	25%	4	100%	-	-	-	NULL
SDCBP	6386	genome.wustl.edu	37	8	59492280	59492280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007067.1	+1	reviewed	p.S226Y	1.000	376	0%	221	30.8%	266	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
CHD7	55636	genome.wustl.edu	37	8	61763075	61763075	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.R1810*	1.000	44	0%	20	35%	2	100%	-	-	-	NULL
CHD7	55636	genome.wustl.edu	37	8	61768742	61768742	+	Missense_Mutation	SNP	C	C	T	rs189926848	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.T2382M	0.472	42	0%	31	32.3%	3	33.3%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
CHD7	55636	genome.wustl.edu	37	8	61769037	61769037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.R2400W	1.000	81	0%	42	26.2%	5	40%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CHD7	55636	genome.wustl.edu	37	8	61778125	61778125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.A2876D	1.000	216	0%	100	33%	22	27.2%	probably_damaging(0.998)	tolerated(0.25)	deleterious(0.511)	NULL
LOC100289411	100289411	genome.wustl.edu	37	8	62430159	62430159	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342846.1	+1	model	p.Q57*	1.000	205	0%	131	30.5%	33	42.4%	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	NULL
CYP7B1	9420	genome.wustl.edu	37	8	65528248	65528248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004820.3	-1	reviewed	p.A284S	1.000	484	0%	370	22.2%	0	-	probably_damaging(0.987)	tolerated(0.2)	deleterious(0.485)	HMMPfam_p450,superfamily_Cytochrome P450
ARMC1	55156	genome.wustl.edu	37	8	66525585	66525585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018120.4	-1	validated	p.S120N	1.000	231	0%	147	27.9%	20	30%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
C8orf46	254778	genome.wustl.edu	37	8	67425830	67425830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152765.3	+1	validated	p.A133V	0.001	190	0%	125	42.4%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67577312	67577312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025054.4	-1	validated	p.K628E	1.000	353	0%	241	27.4%	8	50%	benign(0.051)	tolerated(0.35)	neutral(0.024)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67577454	67577454	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025054.4	-1	validated	p.W580C	1.000	333	0%	198	22.7%	9	88.8%	possibly_damaging(0.649)	deleterious(0)	deleterious(0.672)	NULL
SGK3	23678	genome.wustl.edu	37	8	67752468	67752468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033578.1	+1	reviewed	p.L293I	1.000	238	0%	152	27%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
C8orf45	157777	genome.wustl.edu	37	8	67786400	67786400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173518.4	+1	validated	p.A9T	1.000	225	0%	113	29.2%	1	100%	probably_damaging(0.965)	tolerated(0.13)	deleterious(0.659)	NULL
CSPP1	79848	genome.wustl.edu	37	8	68007627	68007627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077204.1	+1	validated	p.D239Y	0.866	239	0%	161	31.1%	5	100%	probably_damaging(0.955)	tolerated(0.06)	deleterious(0.721)	NULL
ARFGEF1	10565	genome.wustl.edu	37	8	68111234	68111234	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006421.3	-1	reviewed	p.R1829*	1.000	322	0.6%	186	28%	34	32.3%	-	-	-	NULL
PREX2	80243	genome.wustl.edu	37	8	69032449	69032449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024870.2	+1	validated	p.L1175I	1.000	298	0%	155	30.3%	5	40%	benign(0.3)	deleterious(0.01)	deleterious(0.499)	NULL
C8orf34	116328	genome.wustl.edu	37	8	69434087	69434087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052958.1	+1	predicted	p.W162C	1.000	272	0%	171	25.1%	7	28.5%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
C8orf34	116328	genome.wustl.edu	37	8	69552682	69552682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052958.1	+1	predicted	p.R282C	0.997	283	0%	218	29.8%	7	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C8orf34	116328	genome.wustl.edu	37	8	69728171	69728171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052958.1	+1	predicted	p.V423I	1.000	253	0%	141	29.1%	3	33.3%	benign(0)	tolerated(1)	-	NULL
SULF1	23213	genome.wustl.edu	37	8	70476293	70476293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.P28L	0.143	375	0.3%	209	35.4%	23	0%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
SULF1	23213	genome.wustl.edu	37	8	70536201	70536201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.T540I	1.000	153	0%	66	25.8%	18	0%	possibly_damaging(0.49)	deleterious(0.03)	deleterious(0.527)	superfamily_Alkaline_phosphatase_core
PRDM14	63978	genome.wustl.edu	37	8	70964514	70964514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024504.2	-1	validated	p.R505H	1.000	206	0%	117	26.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
XKR9	389668	genome.wustl.edu	37	8	71619290	71619290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011720.1	+1	provisional	p.S132I	0.998	463	0%	273	29.3%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XK-related
EYA1	2138	genome.wustl.edu	37	8	72184067	72184067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000503.4	-1	reviewed	p.G298C	1.000	650	0%	449	32.3%	1	100%	possibly_damaging(0.486)	deleterious(0.01)	deleterious(0.567)	NULL
LOC392232	392232	genome.wustl.edu	37	8	73142391	73142391	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	1.000	267	0%	189	31.2%	0	-	-	-	-	-
LOC392232	392232	genome.wustl.edu	37	8	73157123	73157123	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_037363.2	-1	model	NULL	0.613	441	0%	247	27.5%	0	-	-	-	-	-
JPH1	56704	genome.wustl.edu	37	8	75157095	75157095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020647.2	-1	reviewed	p.A525V	0.032	179	0%	106	26.4%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
JPH1	56704	genome.wustl.edu	37	8	75227736	75227736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020647.2	-1	reviewed	p.R167C	1.000	17	0%	14	50%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GDAP1	54332	genome.wustl.edu	37	8	75272477	75272477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018972.2	+1	reviewed	p.G139V	1.000	487	0%	268	23.1%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HNF4G	3174	genome.wustl.edu	37	8	76459821	76459821	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004133.4	+1	validated	e3-1	1.000	326	0%	255	29.4%	0	-	-	-	-	-
ZFHX4	79776	genome.wustl.edu	37	8	77620000	77620000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.A911V	1.000	159	0%	83	33.7%	0	-	benign(0.135)	-	-	superfamily_C2H2 and C2HC zinc fingers
ZFHX4	79776	genome.wustl.edu	37	8	77761846	77761846	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.C1203W	1.000	415	0.5%	242	31.8%	0	-	benign(0.345)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZFHX4	79776	genome.wustl.edu	37	8	77768271	77768271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.T2993	0.660	220	0%	131	31.3%	0	-	-	-	-	HMMSmart_SM00451
ZFHX4	79776	genome.wustl.edu	37	8	77776566	77776566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.A3494D	1.000	378	0%	270	31.1%	0	-	probably_damaging(0.999)	-	-	NULL
ZBTB10	65986	genome.wustl.edu	37	8	81412381	81412381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105539.1	+1	validated	p.G542E	1.000	145	0%	94	27.7%	15	46.6%	possibly_damaging(0.603)	tolerated(0.15)	neutral(0.450)	NULL
PAG1	55824	genome.wustl.edu	37	8	81897533	81897533	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018440.3	-1	reviewed	p.S118	0.999	105	0%	51	23.5%	1	0%	-	-	-	NULL
IMPA1	3612	genome.wustl.edu	37	8	82593740	82593740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144878.1	-1	reviewed	p.A78D	1.000	101	0%	65	21.5%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
SNX16	64089	genome.wustl.edu	37	8	82736069	82736069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022133.3	-1	reviewed	p.A190V	0.999	218	0%	163	31.9%	7	42.8%	possibly_damaging(0.945)	tolerated(0.14)	deleterious(0.639)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
LRRCC1	85444	genome.wustl.edu	37	8	86019587	86019587	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033402.4	+1	validated	p.G19	1.000	23	0%	14	28.6%	1	100%	-	-	-	NULL
LRRCC1	85444	genome.wustl.edu	37	8	86042233	86042233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033402.4	+1	validated	p.R569Q	1.000	335	0%	219	26.5%	2	0%	benign(0.001)	tolerated(1)	-	NULL
E2F5	1875	genome.wustl.edu	37	8	86114381	86114381	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001951.3	+1	reviewed	e2-1	1.000	90	0%	53	15.1%	0	-	-	-	-	-
CA3	761	genome.wustl.edu	37	8	86352124	86352124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005181.3	+1	reviewed	p.T73N	0.127	106	0%	54	29.6%	2	50%	possibly_damaging(0.507)	tolerated(0.4)	neutral(0.185)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
CA2	760	genome.wustl.edu	37	8	86392911	86392911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000067.2	+1	reviewed	p.R226C	1.000	341	0%	271	28.8%	43	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ATP6V0D2	245972	genome.wustl.edu	37	8	87153737	87153737	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152565.1	+1	validated	p.L180	0.786	163	0%	116	30.2%	0	-	-	-	-	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
SLC7A13	157724	genome.wustl.edu	37	8	87226840	87226840	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138817.2	-1	validated	p.I405	0.000	233	0%	185	25.4%	0	-	-	-	-	NULL
WWP1	11059	genome.wustl.edu	37	8	87423968	87423968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007013.3	+1	validated	p.S309I	0.001	214	0%	144	16.7%	49	16.3%	benign(0.196)	tolerated(0.07)	neutral(0.338)	NULL
WWP1	11059	genome.wustl.edu	37	8	87424036	87424036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007013.3	+1	validated	p.P332T	0.995	180	0%	119	28.6%	37	64.8%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
FAM82B	51115	genome.wustl.edu	37	8	87492534	87492534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016033.2	-1	validated	p.A205T	1.000	25	0%	11	45.5%	44	40.9%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_Prenyl_trans
CPNE3	8895	genome.wustl.edu	37	8	87568512	87568512	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003909.3	+1	reviewed	p.G479	0.002	177	0%	120	31.7%	52	30.7%	-	-	-	HMMSmart_VWA,superfamily_SSF53300
CNGB3	54714	genome.wustl.edu	37	8	87660094	87660094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.P309S	1.000	277	0.4%	189	13.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CNBD1	168975	genome.wustl.edu	37	8	88363985	88363985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173538.2	+1	provisional	p.S372N	0.000	26	0%	39	17.9%	0	-	benign(0.007)	tolerated(0.42)	neutral(0.014)	HMMPfam_cNMP_binding,superfamily_cNMP_binding
MMP16	4325	genome.wustl.edu	37	8	89053881	89053881	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005941.4	-1	reviewed	p.S544	1.000	236	0%	159	19.5%	0	-	-	-	-	NULL
NBN	4683	genome.wustl.edu	37	8	90971017	90971017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002485.4	-1	reviewed	p.P354S	0.133	317	0.6%	223	31.4%	41	31.7%	benign(0.42)	tolerated(0.24)	neutral(0.174)	NULL
NBN	4683	genome.wustl.edu	37	8	90982685	90982685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002485.4	-1	reviewed	p.T268M	0.159	329	0%	217	12.9%	60	26.6%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92307853	92307853	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.S133	0.018	220	0%	142	36.6%	5	60%	-	-	-	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92307857	92307857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.L135M	0.215	214	0%	139	29.5%	8	37.5%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
SLC26A7	115111	genome.wustl.edu	37	8	92406049	92406049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.S601G	0.023	404	0%	217	25.8%	4	25%	benign(0.001)	tolerated(0.75)	neutral(0.002)	HMMPfam_STAS,superfamily_STAS
RUNX1T1	862	genome.wustl.edu	37	8	93003995	93003995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175634.1	-1	reviewed	p.G288V	1.000	182	0%	111	34.2%	1	0%	possibly_damaging(0.897)	deleterious(0.03)	deleterious(0.718)	NULL
FAM92A1	137392	genome.wustl.edu	37	8	94730929	94730929	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145269.3	+1	predicted	p.I190	0.857	24	0%	15	26.7%	11	45.4%	-	-	-	HMMPfam_DUF1208
RBM12B	389677	genome.wustl.edu	37	8	94746551	94746551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203390.2	-1	validated	p.E696D	0.645	366	0.3%	195	26.7%	10	40%	benign(0.253)	tolerated(0.55)	neutral(0.033)	NULL
PDP1	54704	genome.wustl.edu	37	8	94935012	94935012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018444.3	+1	reviewed	p.R242M	1.000	159	0.6%	82	35.4%	21	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
GEM	2669	genome.wustl.edu	37	8	95262770	95262770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005261.3	-1	reviewed	p.T220N	1.000	139	0%	98	27.6%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD54B	25788	genome.wustl.edu	37	8	95479762	95479762	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012415.2	-1	reviewed	p.R2	0.999	489	0%	347	25.1%	3	0%	-	-	-	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95538801	95538801	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.C557	1.000	470	0%	348	27%	24	45.8%	-	-	-	NULL
ESRP1	54845	genome.wustl.edu	37	8	95655610	95655610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017697.3	+1	validated	p.V114A	0.991	112	0%	61	14.8%	29	0%	benign(0.075)	deleterious(0.01)	neutral(0.411)	NULL
INTS8	55656	genome.wustl.edu	37	8	95850815	95850815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017864.2	+1	provisional	p.V329A	1.000	340	0%	194	24.7%	22	86.3%	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
INTS8	55656	genome.wustl.edu	37	8	95877918	95877918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017864.2	+1	provisional	p.R754Q	1.000	450	0%	287	35.2%	25	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
C8orf38	137682	genome.wustl.edu	37	8	96064458	96064458	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152416.2	+1	reviewed	p.T291	0.896	295	0%	157	24.2%	9	33.3%	-	-	-	HMMPfam_SQS_PSY
PTDSS1	9791	genome.wustl.edu	37	8	97316406	97316406	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014754.1	+1	provisional	p.W297*	1.000	481	0%	324	21.3%	50	6%	-	-	-	HMMPfam_PSS
SDC2	6383	genome.wustl.edu	37	8	97614695	97614695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002998.3	+1	reviewed	p.A82D	0.864	428	0.2%	269	13.8%	69	4.3%	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_Syndecan
CPQ	10404	genome.wustl.edu	37	8	98155359	98155359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016134.2	+1	provisional	p.A456V	1.000	358	0%	231	19%	8	25%	possibly_damaging(0.767)	deleterious(0.01)	deleterious(0.690)	superfamily_SSF53187
TSPYL5	85453	genome.wustl.edu	37	8	98289539	98289539	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033512.2	-1	validated	p.S178	0.003	243	0%	104	25%	0	-	-	-	-	NULL
MTDH	92140	genome.wustl.edu	37	8	98731356	98731356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178812.3	+1	validated	p.A487D	0.982	156	0%	121	17.4%	90	30%	possibly_damaging(0.777)	deleterious(0.04)	deleterious(0.639)	NULL
MATN2	4147	genome.wustl.edu	37	8	99015950	99015950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002380.3	+1	reviewed	p.E422D	0.007	80	0%	58	15.5%	16	0%	benign(0)	tolerated(0.6)	neutral(0.004)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
C8orf47	203111	genome.wustl.edu	37	8	99102170	99102170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173549.2	+1	validated	p.E309K	0.006	354	0%	225	31.6%	3	0%	probably_damaging(0.984)	tolerated(0.33)	neutral(0.455)	NULL
STK3	6788	genome.wustl.edu	37	8	99608260	99608260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006281.2	-1	validated	p.Q274H	1.000	141	0%	89	29.2%	13	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
VPS13B	157680	genome.wustl.edu	37	8	100160230	100160230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.G669R	1.000	545	0%	426	16.7%	1	0%	possibly_damaging(0.706)	tolerated(0.69)	neutral(0.256)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100493996	100493996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.C1279Y	1.000	276	0%	206	32.5%	4	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100523656	100523656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.R1542C	1.000	132	0%	120	35.8%	2	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100568878	100568878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.S1674N	1.000	247	0%	203	31%	2	100%	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100779089	100779089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.E2405K	1.000	152	0%	136	22.8%	4	75%	probably_damaging(0.988)	tolerated(0.84)	neutral(0.438)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100866243	100866243	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.V3567	0.010	344	0%	189	29.6%	8	62.5%	-	-	-	NULL
VPS13B	157680	genome.wustl.edu	37	8	100880520	100880520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.A3765V	1.000	109	0%	47	21.3%	6	16.6%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
RGS22	26166	genome.wustl.edu	37	8	101016300	101016300	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015668.3	-1	validated	p.G827	0.000	258	0.4%	176	26.1%	0	-	-	-	-	NULL
ZNF706	51123	genome.wustl.edu	37	8	102213964	102213964	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042510.1	-1	validated	p.A2	1.000	111	0%	66	16.7%	98	33.6%	-	-	-	HMMPfam_DUF1909
UBR5	51366	genome.wustl.edu	37	8	103309160	103309160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.T1209M	1.000	210	0.5%	107	29%	16	50%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1
ODF1	4956	genome.wustl.edu	37	8	103572868	103572868	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024410.3	+1	reviewed	p.N170T	1.000	144	0%	94	30.9%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	superfamily_HSP20_chap
CTHRC1	115908	genome.wustl.edu	37	8	104384807	104384807	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000297577	+1	known	p.V10F	0.000	164	0%	98	21.4%	0	-	benign(0.008)	tolerated(0.1)	neutral(0.286)	NULL
SLC25A32	81034	genome.wustl.edu	37	8	104412708	104412708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030780.3	-1	validated	p.C293*	1.000	301	0%	185	26.5%	22	54.5%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A32	81034	genome.wustl.edu	37	8	104414267	104414267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030780.3	-1	validated	p.L190M	0.997	124	0.8%	88	19.3%	25	24%	benign(0.175)	tolerated(0.3)	neutral(0.044)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SLC25A32	81034	genome.wustl.edu	37	8	104415461	104415461	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030780.3	-1	validated	p.R161	0.961	214	0%	159	28.3%	12	58.3%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
DCAF13	25879	genome.wustl.edu	37	8	104453709	104453709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015420.6	+1	validated	p.K523N	0.004	317	0%	250	30%	105	36.1%	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMPfam_Sof1
RIMS2	9699	genome.wustl.edu	37	8	105160905	105160905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000436393	+1	known	p.I1073V	1.000	97	0%	68	17.6%	1	0%	benign(0.005)	tolerated(1)	-	NULL
RIMS2	9699	genome.wustl.edu	37	8	105263296	105263296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.A1246S	1.000	212	0%	139	33.1%	0	-	possibly_damaging(0.927)	tolerated(0.1)	deleterious(0.661)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRP12	29967	genome.wustl.edu	37	8	105509662	105509662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013437.4	-1	reviewed	p.G373V	1.000	205	0%	142	31.7%	7	85.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_LDL receptor-like module
ZFPM2	23414	genome.wustl.edu	37	8	106815359	106815359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012082.3	+1	reviewed	p.G1017C	1.000	136	0%	88	27.3%	0	-	possibly_damaging(0.439)	deleterious(0.04)	deleterious(0.492)	NULL
NUDCD1	84955	genome.wustl.edu	37	8	110293197	110293197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032869.3	-1	validated	p.S343I	1.000	176	1.1%	121	25.6%	5	40%	possibly_damaging(0.92)	tolerated(0.08)	deleterious(0.671)	superfamily_HSP20-like chaperones,HMMPfam_CS
ENY2	56943	genome.wustl.edu	37	8	110348394	110348394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020189.4	+1	provisional	p.A15V	1.000	148	0%	105	21.9%	137	37.9%	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_EnY2
PKHD1L1	93035	genome.wustl.edu	37	8	110478930	110478930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.R2846H	1.000	81	0%	50	26%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110519923	110519923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.V3676I	1.000	216	0%	169	14.2%	1	0%	benign(0.365)	tolerated(0.09)	neutral(0.412)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113259249	113259249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.P3408S	1.000	157	0%	117	32.5%	0	-	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113277702	113277702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.G3209D	0.999	479	0%	315	24.8%	0	-	benign(0.024)	tolerated(0.67)	neutral(0.004)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113562953	113562953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.Q1504R	1.000	224	0%	157	24.8%	0	-	probably_damaging(0.971)	tolerated(0.71)	neutral(0.414)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113599408	113599408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.P1258S	1.000	207	0%	139	28.1%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	114186021	114186021	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.H213	0.994	238	0%	185	28.1%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TRPS1	7227	genome.wustl.edu	37	8	116426762	116426762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014112.2	-1	reviewed	p.R1125Q	1.000	108	0%	64	35.9%	21	47.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TRPS1	7227	genome.wustl.edu	37	8	116631464	116631464	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014112.2	-1	reviewed	p.S287	1.000	221	0%	121	29.8%	15	53.3%	-	-	-	NULL
RAD21	5885	genome.wustl.edu	37	8	117864854	117864854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.E419K	1.000	277	0%	169	37.9%	78	48.7%	benign(0.048)	tolerated(0.07)	neutral(0.322)	NULL
SLC30A8	169026	genome.wustl.edu	37	8	118174062	118174062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173851.2	+1	reviewed	p.H220Y	1.000	205	0%	121	20.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_efflux
EXT1	2131	genome.wustl.edu	37	8	119122923	119122923	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000127.2	-1	reviewed	p.Q121	1.000	160	0%	89	31.5%	15	46.6%	-	-	-	HMMPfam_Exostosin
TNFRSF11B	4982	genome.wustl.edu	37	8	119936822	119936822	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002546.3	-1	reviewed	p.R333*	1.000	334	0%	193	30.1%	0	-	-	-	-	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
COLEC10	10584	genome.wustl.edu	37	8	120118327	120118327	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006438.3	+1	reviewed	p.G244D	0.994	253	0%	264	11.4%	0	-	benign(0.078)	tolerated(0.41)	neutral(0.020)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
NOV	4856	genome.wustl.edu	37	8	120435286	120435286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002514.3	+1	reviewed	p.T330A	0.985	599	0.2%	324	27.2%	10	60%	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	HMMSmart_CT,PatternScan_CTCK_1,HMMPfam_Cys_knot
ENPP2	5168	genome.wustl.edu	37	8	120577196	120577196	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	e24-1	1.000	302	0%	217	13.4%	0	-	-	-	-	-
ENPP2	5168	genome.wustl.edu	37	8	120581568	120581568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.R706W	0.990	137	0%	81	34.6%	13	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00477,superfamily_His-Me finger endonucleases
TAF2	6873	genome.wustl.edu	37	8	120809265	120809265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.Q352H	1.000	292	0%	201	23.9%	5	20%	benign(0.361)	tolerated(0.25)	neutral(0.151)	HMMPfam_Peptidase_M1,superfamily_SSF55486
TAF2	6873	genome.wustl.edu	37	8	120816233	120816233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.N149D	1.000	792	0.1%	589	32.3%	5	40%	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_Peptidase_M1,superfamily_SSF63737
DEPTOR	64798	genome.wustl.edu	37	8	121061852	121061852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022783.2	+1	validated	p.V380A	1.000	230	0%	151	23.2%	156	41.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_PDZ,superfamily_PDZ
COL14A1	7373	genome.wustl.edu	37	8	121292234	121292234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	p.G1181D	1.000	146	0%	106	11.3%	10	0%	probably_damaging(0.997)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
COL14A1	7373	genome.wustl.edu	37	8	121293159	121293159	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021110.1	+1	validated	e30-1	1.000	139	0%	94	33%	1	0%	-	-	-	-
DERL1	79139	genome.wustl.edu	37	8	124034972	124034972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024295.4	-1	validated	p.Q135H	1.000	634	0%	397	29%	43	44.1%	probably_damaging(0.975)	deleterious(0.03)	deleterious(0.781)	HMMPfam_DER1
WDR67	93594	genome.wustl.edu	37	8	124132306	124132306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145647.3	+1	validated	p.A483V	1.000	93	0%	41	22%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
ZHX1	11244	genome.wustl.edu	37	8	124265912	124265912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017926.1	-1	reviewed	p.R759W	1.000	418	0%	266	36.5%	19	47.3%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_Homeodomain_like
FBXO32	114907	genome.wustl.edu	37	8	124525447	124525447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058229.2	-1	reviewed	p.Q214H	1.000	86	0%	33	24.2%	7	14.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
FBXO32	114907	genome.wustl.edu	37	8	124525623	124525623	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058229.2	-1	reviewed	e6-1	1.000	99	0%	45	13.3%	0	-	-	-	-	-
ANXA13	312	genome.wustl.edu	37	8	124696898	124696898	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003954.1	-1	reviewed	p.A302	0.002	265	0%	109	22%	0	-	-	-	-	superfamily_Annexin,HMMPfam_Annexin
ANXA13	312	genome.wustl.edu	37	8	124705963	124705963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003954.1	-1	reviewed	p.K217N	0.226	460	0%	235	25.5%	0	-	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	superfamily_Annexin,HMMPfam_Annexin
FAM91A1	157769	genome.wustl.edu	37	8	124817579	124817579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144963.2	+1	validated	p.E628K	1.000	161	0%	106	21.7%	5	0%	benign(0.039)	tolerated(0.74)	neutral(0.004)	NULL
FER1L6	654463	genome.wustl.edu	37	8	124968253	124968253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039112.2	+1	validated	p.K5N	1.000	55	0%	31	19.4%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
TRMT12	55039	genome.wustl.edu	37	8	125463465	125463465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017956.3	+1	validated	p.Q99H	0.014	106	0%	36	19.4%	10	40%	possibly_damaging(0.462)	tolerated(0.07)	deleterious(0.471)	NULL
MTSS1	9788	genome.wustl.edu	37	8	125577935	125577935	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431961	-1	known	p.H112Y	1.000	162	0%	85	25.9%	14	21.4%	-	-	-	NULL
KIAA0196	9897	genome.wustl.edu	37	8	126056258	126056258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014846.3	-1	reviewed	p.V916I	1.000	211	0%	131	29%	53	35.8%	benign(0.002)	tolerated(0.16)	neutral(0.059)	HMMPfam_Strumpellin
TRIB1	10221	genome.wustl.edu	37	8	126445811	126445811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025195.2	+1	validated	p.D205N	1.000	126	0%	50	42%	19	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
POU5F1B	5462	genome.wustl.edu	37	8	128428160	128428160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391675	+1	known	p.G17S	0.062	10	0.000	4	1.000	0	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
MYC	4609	genome.wustl.edu	37	8	128753094	128753094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002467.4	+1	reviewed	p.L419M	0.004	419	0.2%	211	29.9%	68	42.6%	probably_damaging(0.955)	tolerated(0.1)	deleterious(0.685)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
FAM49B	51571	genome.wustl.edu	37	8	130883697	130883697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016623.3	-1	predicted	p.N40I	1.000	279	0%	194	15.5%	37	13.5%	possibly_damaging(0.782)	deleterious(0.01)	deleterious(0.699)	HMMPfam_DUF1394
ASAP1	50807	genome.wustl.edu	37	8	131104232	131104232	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018482.2	-1	validated	p.G853	1.000	374	0%	205	25.9%	23	30.4%	-	-	-	NULL
ASAP1	50807	genome.wustl.edu	37	8	131191524	131191524	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018482.2	-1	validated	p.Y244	0.787	96	0%	53	41.5%	9	33.3%	-	-	-	NULL
ADCY8	114	genome.wustl.edu	37	8	131826343	131826343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001115.2	-1	reviewed	p.H962R	1.000	163	0%	110	33.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_CYCc
KCNQ3	3786	genome.wustl.edu	37	8	133141996	133141996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004519.2	-1	reviewed	p.G711E	1.000	123	0%	70	27.1%	0	-	possibly_damaging(0.619)	tolerated(0.13)	neutral(0.468)	NULL
LRRC6	23639	genome.wustl.edu	37	8	133622422	133622422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.C377Y	1.000	328	0.6%	220	25.5%	2	0%	benign(0.12)	tolerated(0.12)	neutral(0.270)	HMMPfam_CS
PHF20L1	51105	genome.wustl.edu	37	8	133811103	133811103	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016018.4	+1	validated	p.G142	1.000	98	0%	68	23.5%	11	100%	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	133925450	133925450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.C1440R	1.000	213	0%	120	21.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_TNF receptor-like
TG	7038	genome.wustl.edu	37	8	133980191	133980191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.P1947S	0.607	107	0%	71	18.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TG	7038	genome.wustl.edu	37	8	133981785	133981785	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.V1982	0.962	323	0%	209	28.2%	0	-	-	-	-	NULL
WISP1	8840	genome.wustl.edu	37	8	134225191	134225191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003882.2	+1	reviewed	p.P52S	1.000	68	0%	51	21.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00121
WISP1	8840	genome.wustl.edu	37	8	134233035	134233035	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003882.2	+1	reviewed	p.D187	0.634	30	0%	13	38.5%	0	-	-	-	-	NULL
WISP1	8840	genome.wustl.edu	37	8	134239655	134239655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003882.2	+1	reviewed	p.A269V	1.000	95	0%	56	28.6%	2	0%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
WISP1	8840	genome.wustl.edu	37	8	134239673	134239673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003882.2	+1	reviewed	p.A275D	1.000	62	0%	39	38.5%	2	0%	possibly_damaging(0.838)	deleterious(0.01)	deleterious(0.726)	HMMPfam_Cys_knot
NDRG1	10397	genome.wustl.edu	37	8	134276799	134276799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135242.1	-1	reviewed	p.G66S	1.000	213	1.4%	110	23.6%	20	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
KHDRBS3	10656	genome.wustl.edu	37	8	136594318	136594318	+	Splice_Site	SNP	T	T	C	rs113388499		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006558.1	+1	provisional	e6+2	1.000	117	0%	69	36.2%	3	100%	-	-	-	-
FAM135B	51059	genome.wustl.edu	37	8	139180157	139180157	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.Y413	0.124	368	0%	192	26.6%	0	-	-	-	-	NULL
FAM135B	51059	genome.wustl.edu	37	8	139278044	139278044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.V67M	0.501	163	0%	114	27.2%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
CHRAC1	54108	genome.wustl.edu	37	8	141525533	141525533	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_023360.1	+1	validated	NULL	0.007	29	0%	13	30.8%	40	42.5%	-	-	-	-
EIF2C2	27161	genome.wustl.edu	37	8	141542668	141542668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000220592	-1	known	p.R773H	1.000	62	0%	24	45.8%	25	48%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
EIF2C2	27161	genome.wustl.edu	37	8	141567305	141567305	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012154.3	-1	reviewed	p.R296Q	0.404	107	0%	51	19.6%	10	40%	-	-	-	NULL
DENND3	22898	genome.wustl.edu	37	8	142199164	142199164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014957.2	+1	validated	p.S975I	1.000	41	0%	16	50%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CYP11B1	1584	genome.wustl.edu	37	8	143958537	143958537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000497.3	-1	reviewed	p.R166M	0.985	58	0%	29	34.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_p450,superfamily_Cytochrome_P450
TOP1MT	116447	genome.wustl.edu	37	8	144392282	144392282	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.G553	1.000	77	0%	32	18.8%	9	0%	-	-	-	superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,PatternScan_TOPOISOMERASE_I_EUK
TOP1MT	116447	genome.wustl.edu	37	8	144398243	144398243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052963.1	-1	reviewed	p.V462M	0.995	103	0%	65	27.7%	32	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_DNA_brk_join_enz,HMMSmart_TOPEUc,HMMPfam_Topoisom_I
C8orf73	642475	genome.wustl.edu	37	8	144654307	144654307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100878.1	-1	validated	p.Y115H	0.051	29	0%	16	25%	1	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EEF1D	1936	genome.wustl.edu	37	8	144662286	144662286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130053.1	-1	reviewed	p.P601S	1.000	35	0%	24	16.7%	565	36.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EF1_GNE,superfamily_eEF-1beta-like
ZNF623	9831	genome.wustl.edu	37	8	144732881	144732881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014789.3	+1	validated	p.R280H	0.001	808	0.2%	471	28.2%	9	44.4%	probably_damaging(0.996)	tolerated(0.33)	deleterious(0.486)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SCRIB	23513	genome.wustl.edu	37	8	144891879	144891879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182706.3	-1	validated	p.L514M	1.000	34	0%	23	21.7%	32	53.1%	possibly_damaging(0.923)	deleterious(0.02)	deleterious(0.756)	NULL
SHARPIN	81858	genome.wustl.edu	37	8	145157953	145157953	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030974.3	-1	validated	e2+1	1.000	38	0%	17	23.5%	5	80%	-	-	-	-
CPSF1	29894	genome.wustl.edu	37	8	145624229	145624229	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013291.2	-1	validated	p.T526	1.000	43	0%	19	26.3%	54	31.4%	-	-	-	NULL
ZNF16	7564	genome.wustl.edu	37	8	146156754	146156754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029976.2	-1	reviewed	p.S473R	0.050	330	0%	206	14.1%	15	20%	probably_damaging(0.988)	tolerated(0.27)	deleterious(0.471)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C8orf33	65265	genome.wustl.edu	37	8	146278456	146278456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023080.2	+1	validated	p.Q109H	0.863	80	0%	35	22.9%	98	51%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
CBWD1	55871	genome.wustl.edu	37	9	154705	154705	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377447	-1	known	p.Y222	0.237	226	0%	182	28%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CBWD1	55871	genome.wustl.edu	37	9	162470	162470	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018491.3	-1	validated	e6-1	1.000	122	0%	84	22.6%	0	-	-	-	-	-
KANK1	23189	genome.wustl.edu	37	9	712029	712029	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.S421	0.000	111	0%	46	30.4%	20	25%	-	-	-	superfamily_ANK
KANK1	23189	genome.wustl.edu	37	9	730166	730166	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.S938	0.000	191	0%	97	23.7%	19	47.3%	-	-	-	superfamily_ANK
KANK1	23189	genome.wustl.edu	37	9	738435	738435	+	Missense_Mutation	SNP	G	G	A	rs189399241	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.G1162S	1.000	309	0%	143	32.9%	59	32.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SMARCA2	6595	genome.wustl.edu	37	9	2056775	2056775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003070.3	+1	reviewed	p.A426D	1.000	43	2.3%	31	22.6%	21	66.6%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	NULL
VLDLR	7436	genome.wustl.edu	37	9	2648668	2648668	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003383.3	+1	reviewed	e14-1	1.000	347	0%	158	29.7%	1	0%	-	-	-	-
KIAA0020	9933	genome.wustl.edu	37	9	2831329	2831329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014878.4	-1	validated	p.D178N	1.000	202	0%	123	29.3%	13	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00025,superfamily_ARM repeat
RFX3	5991	genome.wustl.edu	37	9	3262980	3262980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134428.1	-1	reviewed	p.N520K	1.000	427	0%	370	29.5%	17	58.8%	benign(0.406)	deleterious(0.01)	deleterious(0.536)	NULL
GLIS3	169792	genome.wustl.edu	37	9	3829449	3829449	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042413.1	-1	reviewed	p.P839	0.048	199	1%	127	25.2%	13	53.8%	-	-	-	NULL
C9orf68	55064	genome.wustl.edu	37	9	4604220	4604220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039395.3	-1	validated	p.P380H	0.011	175	0%	122	17.2%	2	50%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
JAK2	3717	genome.wustl.edu	37	9	5054776	5054776	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.G276	1.000	348	0%	267	15.4%	5	20%	-	-	-	NULL
JAK2	3717	genome.wustl.edu	37	9	5089834	5089834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004972.3	+1	reviewed	p.V911A	1.000	122	0%	59	27.1%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ERMP1	79956	genome.wustl.edu	37	9	5787521	5787521	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000489219	-1	known	p.W836*	1.000	369	0%	241	39%	20	50%	-	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5921384	5921384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.A1538T	1.000	726	0%	493	14.6%	21	14.2%	benign(0)	tolerated(1)	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5922767	5922767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.D1077Y	1.000	621	0.2%	424	23.6%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5923134	5923134	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017969.2	-1	validated	p.K954	1.000	701	0%	491	27.9%	11	54.5%	-	-	-	NULL
RANBP6	26953	genome.wustl.edu	37	9	6014299	6014299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.D437Y	1.000	112	0.9%	69	11.6%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM-type_fold
IL33	90865	genome.wustl.edu	37	9	6250525	6250525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033439.2	+1	validated	p.R48H	0.686	252	0%	185	25.9%	12	41.6%	possibly_damaging(0.865)	deleterious(0)	deleterious(0.780)	NULL
UHRF2	115426	genome.wustl.edu	37	9	6475489	6475489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152896.1	+1	reviewed	p.G321E	1.000	1018	0.1%	649	28.2%	13	61.5%	benign(0.221)	tolerated(0.58)	neutral(0.027)	NULL
GLDC	2731	genome.wustl.edu	37	9	6533070	6533070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000170.2	-1	reviewed	p.P1004S	1.000	299	0%	168	26.8%	1	0%	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	NULL
LOC100287684	100287684	genome.wustl.edu	37	9	6834563	6834563	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342904.1	-1	model	p.V305	1.000	61	0%	30	16.7%	0	-	-	-	-	NULL
LOC100287684	100287684	genome.wustl.edu	37	9	6835411	6835411	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342904.1	-1	model	p.R50	1.000	235	0%	112	30.4%	3	0%	-	-	-	NULL
KDM4C	23081	genome.wustl.edu	37	9	6849543	6849543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015061.3	+1	reviewed	p.V158I	0.290	610	0%	382	13.6%	4	25%	benign(0)	tolerated(1)	-	HMMSmart_SM00558
MPDZ	8777	genome.wustl.edu	37	9	13121763	13121763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003829.3	-1	validated	p.L1736I	1.000	176	0%	110	27.3%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NFIB	4781	genome.wustl.edu	37	9	14150218	14150218	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005596.2	-1	validated	p.I244	0.975	629	0%	494	28.5%	15	46.6%	-	-	-	HMMPfam_CTF_NFI
ZDHHC21	340481	genome.wustl.edu	37	9	14674328	14674328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178566.4	-1	validated	p.R4Q	1.000	457	0%	371	23.5%	8	25%	possibly_damaging(0.885)	tolerated(0.05)	deleterious(0.692)	NULL
FREM1	158326	genome.wustl.edu	37	9	14812981	14812981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.V908I	0.011	613	0.2%	387	26.9%	0	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
BNC2	54796	genome.wustl.edu	37	9	16552575	16552575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017637.5	-1	validated	p.G208S	1.000	138	0%	53	28.3%	0	-	probably_damaging(0.977)	tolerated(0.08)	deleterious(0.719)	NULL
ADAMTSL1	92949	genome.wustl.edu	37	9	18817204	18817204	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040272.4	+1	validated	p.G1301	0.999	32	0%	23	26.1%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HAUS6	54801	genome.wustl.edu	37	9	19058856	19058856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017645.3	-1	provisional	p.A637T	0.001	232	0%	144	10.4%	13	30.7%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
PLIN2	123	genome.wustl.edu	37	9	19121097	19121097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122.2	-1	reviewed	p.A126T	0.999	207	0%	109	30.3%	81	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Perilipin
DENND4C	55667	genome.wustl.edu	37	9	19336364	19336364	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017925.4	+1	provisional	p.Q660*	1.000	156	0%	92	29.3%	3	0%	-	-	-	NULL
DENND4C	55667	genome.wustl.edu	37	9	19346883	19346883	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017925.4	+1	provisional	p.S1087	0.030	147	0%	113	21.2%	11	18.1%	-	-	-	NULL
RPS6	6194	genome.wustl.edu	37	9	19378843	19378843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010.2	-1	reviewed	p.G71D	1.000	100	0%	58	31%	7719	41.8%	possibly_damaging(0.801)	tolerated(0.15)	deleterious(0.542)	HMMPfam_Ribosomal_S6e
LOC392288	392288	genome.wustl.edu	37	9	19461277	19461277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_373277.5	-1	model	p.R261C	0.001	60	0%	26	38.5%	0	-	-	-	-	superfamily_Ubiquitin-like
SLC24A2	25769	genome.wustl.edu	37	9	19786017	19786017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020344.1	-1	provisional	p.N283S	1.000	233	0%	117	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20823051	20823051	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.K619	0.994	130	0%	127	40.2%	21	52.3%	-	-	-	superfamily_ARM-type_fold
IFNB1	3456	genome.wustl.edu	37	9	21077786	21077786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002176.2	-1	validated	p.G28E	0.006	198	0%	144	34.7%	0	-	possibly_damaging(0.628)	tolerated(0.16)	neutral(0.278)	HMMPfam_Interferon,superfamily_4-helical cytokines
IFNA5	3442	genome.wustl.edu	37	9	21304960	21304960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002169.2	-1	validated	p.T99N	0.021	658	0%	425	30.4%	0	-	possibly_damaging(0.662)	deleterious(0)	deleterious(0.678)	HMMPfam_Interferon,HMMSmart_IFabd,superfamily_4_helix_cytokine
MTAP	4507	genome.wustl.edu	37	9	21837988	21837988	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.P143	0.187	623	0%	386	32.1%	20	20%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
MTAP	4507	genome.wustl.edu	37	9	21854687	21854687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.V170I	0.991	342	0%	238	31.5%	20	65%	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
C9orf82	79886	genome.wustl.edu	37	9	26884880	26884880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024828.3	-1	validated	p.D198G	1.000	373	0%	213	34.3%	34	47%	benign(0.137)	deleterious(0.02)	neutral(0.395)	NULL
C9orf72	203228	genome.wustl.edu	37	9	27556774	27556774	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018325.2	-1	validated	p.V292	0.997	252	0%	158	10.8%	11	0%	-	-	-	NULL
LINGO2	158038	genome.wustl.edu	37	9	27949213	27949213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.S486N	1.000	204	0.5%	150	32.7%	0	-	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
LINGO2	158038	genome.wustl.edu	37	9	27950531	27950531	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.R47*	1.000	227	0.4%	171	24.6%	0	-	-	-	-	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
DDX58	23586	genome.wustl.edu	37	9	32459383	32459383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014314.3	-1	reviewed	p.V823I	0.307	270	0.4%	162	23.5%	15	20%	benign(0)	tolerated(1)	-	NULL
TOPORS	10210	genome.wustl.edu	37	9	32543588	32543588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005802.3	-1	reviewed	p.G312E	1.000	215	0%	125	25.6%	11	63.6%	unknown(0)	tolerated(0.07)	-	NULL
TOPORS	10210	genome.wustl.edu	37	9	32543907	32543907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005802.3	-1	reviewed	p.P206S	1.000	254	0%	154	32.5%	7	42.8%	unknown(0)	tolerated(0.05)	-	NULL
APTX	54840	genome.wustl.edu	37	9	32987811	32987811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175073.1	-1	reviewed	p.V72I	0.879	280	0.4%	135	23.7%	18	61.1%	benign(0)	tolerated(0.95)	-	superfamily_SMAD/FHA domain
SMU1	55234	genome.wustl.edu	37	9	33056946	33056946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018225.2	-1	validated	p.S295I	1.000	366	0%	190	25.3%	99	51.5%	benign(0.011)	deleterious(0)	neutral(0.445)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NFX1	4799	genome.wustl.edu	37	9	33295189	33295189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.G266V	0.275	169	0%	134	20.9%	18	38.8%	benign(0.116)	tolerated(0.09)	neutral(0.305)	NULL
NOL6	65083	genome.wustl.edu	37	9	33462674	33462674	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022917.4	-1	reviewed	p.R1143	1.000	170	0%	74	33.8%	51	47%	-	-	-	NULL
UBAP2	55833	genome.wustl.edu	37	9	33927001	33927001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018449.2	-1	reviewed	p.L817F	1.000	41	0%	25	24%	75	30.6%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
DCAF12	25853	genome.wustl.edu	37	9	34093293	34093293	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015397.3	-1	reviewed	p.R339*	1.000	172	0%	96	25%	40	5%	-	-	-	HMMSmart_WD40
UBAP1	51271	genome.wustl.edu	37	9	34249921	34249921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016525.4	+1	reviewed	p.L410I	1.000	105	0%	59	32.2%	65	46.1%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	superfamily_UBA-like
C9orf24	84688	genome.wustl.edu	37	9	34379098	34379098	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147169.1	-1	reviewed	p.T104	0.195	139	0%	83	28.9%	5	80%	-	-	-	NULL
DNAI1	27019	genome.wustl.edu	37	9	34490022	34490022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012144.2	+1	reviewed	p.S134Y	0.951	82	0%	45	20%	1	0%	benign(0.317)	deleterious(0.03)	neutral(0.464)	superfamily_WD40_like
DNAJB5	25822	genome.wustl.edu	37	9	34996831	34996831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135005.1	+1	validated	p.V333M	0.994	85	0%	36	16.7%	5	0%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
C9orf131	138724	genome.wustl.edu	37	9	35044125	35044125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203299.2	+1	validated	p.T500N	0.003	837	0%	471	29.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
VCP	7415	genome.wustl.edu	37	9	35067983	35067983	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007126.3	-1	reviewed	p.C69	1.000	319	0%	169	21.3%	108	6.4%	-	-	-	HMMPfam_CDC48_N,superfamily_ADC-like
PIGO	84720	genome.wustl.edu	37	9	35091686	35091686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032634.2	-1	reviewed	p.R733Q	1.000	52	0%	20	25%	15	53.3%	benign(0.155)	tolerated(0.41)	neutral(0.028)	NULL
STOML2	30968	genome.wustl.edu	37	9	35101169	35101169	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013442.1	-1	provisional	p.S229	0.014	298	0%	117	32.5%	205	39%	-	-	-	NULL
UNC13B	10497	genome.wustl.edu	37	9	35380501	35380501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006377.3	+1	reviewed	p.R665C	1.000	192	0%	107	32.7%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TESK1	7016	genome.wustl.edu	37	9	35609437	35609437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006285.2	+1	reviewed	p.Q527*	0.776	65	0%	42	23.8%	84	28.5%	-	-	-	NULL
CCDC107	203260	genome.wustl.edu	37	9	35660597	35660597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174923.1	+1	provisional	p.E121D	1.000	143	0.7%	71	23.9%	28	14.2%	benign(0.395)	deleterious(0)	deleterious(0.572)	NULL
TLN1	7094	genome.wustl.edu	37	9	35697907	35697907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006289.3	-1	reviewed	p.A2503T	1.000	56	0%	43	25.6%	162	40.7%	benign(0.406)	tolerated(0.13)	neutral(0.383)	HMMPfam_I_LWEQ,HMMSmart_ILWEQ
TLN1	7094	genome.wustl.edu	37	9	35721734	35721734	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006289.3	-1	reviewed	p.R339*	1.000	291	0.3%	168	24.4%	33	6%	-	-	-	superfamily_SSF50729
TLN1	7094	genome.wustl.edu	37	9	35724889	35724889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006289.3	-1	reviewed	p.T99M	1.000	325	0%	176	30.1%	22	4.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
GBA2	57704	genome.wustl.edu	37	9	35737541	35737541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378094	-1	known	p.L856I	0.206	58	0%	39	25.6%	6	0%	possibly_damaging(0.936)	tolerated(0.61)	neutral(0.386)	HMMPfam_DUF608
GBA2	57704	genome.wustl.edu	37	9	35737860	35737860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020944.2	-1	reviewed	p.A797V	0.228	222	0%	124	37.9%	30	40%	benign(0.009)	tolerated(0.26)	neutral(0.035)	HMMPfam_DUF608
RGP1	9827	genome.wustl.edu	37	9	35751980	35751980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080496.1	+1	provisional	p.R304C	0.991	90	0%	40	35%	11	27.2%	benign(0.006)	deleterious(0.05)	neutral(0.345)	HMMPfam_Rgp1
MSMP	692094	genome.wustl.edu	37	9	35753711	35753711	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044264.1	-1	provisional	p.K62T	0.998	92	0%	37	29.7%	13	61.5%	benign(0.058)	tolerated(0.24)	neutral(0.041)	NULL
NPR2	4882	genome.wustl.edu	37	9	35806472	35806472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003995.3	+1	reviewed	p.R819H	1.000	244	0%	111	28.8%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NPR2	4882	genome.wustl.edu	37	9	35809163	35809163	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003995.3	+1	reviewed	p.I999	1.000	504	0%	228	29.4%	5	60%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
RECK	8434	genome.wustl.edu	37	9	36087903	36087903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021111.2	+1	reviewed	p.G284C	0.999	294	0%	200	27%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF38	152006	genome.wustl.edu	37	9	36357880	36357880	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022781.4	-1	reviewed	p.I210	0.998	236	0%	122	35.2%	27	37%	-	-	-	NULL
MELK	9833	genome.wustl.edu	37	9	36665508	36665508	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014791.2	+1	provisional	p.T446	1.000	253	0%	190	15.3%	45	28.8%	-	-	-	NULL
PAX5	5079	genome.wustl.edu	37	9	36846846	36846846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016734.1	-1	reviewed	p.L365	1.000	39	0%	18	33.3%	0	-	-	-	-	NULL
ZBTB5	9925	genome.wustl.edu	37	9	37441779	37441779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014872.2	-1	validated	p.A257V	0.004	223	0%	127	28.3%	10	30%	benign(0.003)	tolerated(0.08)	neutral(0.300)	NULL
POLR1E	64425	genome.wustl.edu	37	9	37498102	37498102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022490.1	+1	provisional	p.V256A	1.000	99	1%	62	29%	33	15.1%	possibly_damaging(0.596)	deleterious(0.01)	deleterious(0.612)	HMMPfam_RNA_pol_I_A49
FBXO10	26267	genome.wustl.edu	37	9	37537197	37537197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.G443	0.002	90	0%	53	13.2%	2	0%	-	-	-	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like
FRMPD1	22844	genome.wustl.edu	37	9	37740177	37740177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.R551I	0.013	185	0%	84	31%	0	-	benign(0.067)	deleterious(0.03)	neutral(0.369)	NULL
RG9MTD3	158234	genome.wustl.edu	37	9	37777657	37777657	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144964.2	+1	validated	p.G302*	1.000	137	0%	95	24.2%	11	45.4%	-	-	-	HMMPfam_tRNA_m1G_MT
DCAF10	79269	genome.wustl.edu	37	9	37861176	37861176	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024345.3	+1	validated	p.R451*	1.000	321	0%	207	29%	42	47.6%	-	-	-	superfamily_WD40 repeat-like
MCART1	92014	genome.wustl.edu	37	9	37887836	37887836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033412.3	-1	validated	p.R238C	1.000	283	0%	137	23.4%	11	54.5%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CNTNAP3	79937	genome.wustl.edu	37	9	39177419	39177419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033655.3	-1	reviewed	p.V275I	0.967	151	0%	62	11.3%	0	-	possibly_damaging(0.942)	tolerated(0.06)	deleterious(0.710)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ZNF658	26149	genome.wustl.edu	37	9	40774469	40774469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033160.5	-1	validated	p.C269Y	0.001	659	0%	411	24.8%	5	20%	possibly_damaging(0.449)	tolerated(1)	neutral(0.147)	superfamily_C2H2 and C2HC zinc fingers
FAM75A6	389730	genome.wustl.edu	37	9	43625022	43625022	+	Missense_Mutation	SNP	G	G	A	rs150951585	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.A1222V	0.000	762	0%	386	27.2%	0	-	possibly_damaging(0.649)	tolerated(0.11)	deleterious(0.500)	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43629286	43629286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.R75M	0.000	484	0.2%	257	26.5%	0	-	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	NULL
FAM75A6	389730	genome.wustl.edu	37	9	43629308	43629308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145196.1	-1	predicted	p.R68W	0.000	501	0%	267	25.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ANKRD20A4	728747	genome.wustl.edu	37	9	69391161	69391161	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098805.1	+1	provisional	p.I223	0.551	1175	0%	774	7.9%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD20A4	728747	genome.wustl.edu	37	9	69421997	69421997	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098805.1	+1	provisional	p.E487	0.000	212	0%	149	17.4%	0	-	-	-	-	NULL
ANKRD20A4	728747	genome.wustl.edu	37	9	69423396	69423396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098805.1	+1	provisional	p.E564D	0.983	552	0%	393	9.4%	0	-	possibly_damaging(0.806)	deleterious(0.04)	deleterious(0.652)	NULL
PGM5	5239	genome.wustl.edu	37	9	71098964	71098964	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021965.3	+1	validated	p.Q493	1.000	478	0%	288	27.8%	9	0%	-	-	-	HMMPfam_PGM_PMM_IV,superfamily_Phosphoglucomutase C-terminal domain
FAM189A2	9413	genome.wustl.edu	37	9	72000894	72000894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457148	+1	known	p.A135V	0.005	120	0%	46	15.2%	4	50%	-	-	-	NULL
APBA1	320	genome.wustl.edu	37	9	72130933	72130933	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001163.3	-1	reviewed	p.D398	0.621	162	0%	79	27.8%	2	50%	-	-	-	NULL
C9orf135	138255	genome.wustl.edu	37	9	72471509	72471509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010940.1	+1	validated	p.M100I	0.008	240	0%	177	28.8%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73151292	73151292	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396280	-1	known	p.L1416I	0.152	299	0%	163	31.3%	0	-	-	-	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73152140	73152140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.T1285S	1.000	176	0%	92	9.8%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
TRPM3	80036	genome.wustl.edu	37	9	73152202	73152202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.A1264V	1.000	124	0%	84	15.5%	0	-	benign(0)	tolerated(1)	-	NULL
TRPM3	80036	genome.wustl.edu	37	9	73236167	73236167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007471.2	-1	reviewed	p.G599V	1.000	85	0%	51	19.6%	0	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
TMEM2	23670	genome.wustl.edu	37	9	74345693	74345693	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.T567	0.001	295	0%	192	13.5%	13	38.4%	-	-	-	NULL
FAM108B1	51104	genome.wustl.edu	37	9	74489840	74489840	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016014.2	-1	validated	p.R53*	1.000	233	0%	162	25.9%	22	27.2%	-	-	-	superfamily_SSF53474
ZFAND5	7763	genome.wustl.edu	37	9	74971872	74971872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102420.1	-1	validated	p.M156I	1.000	165	0%	93	29%	154	41.5%	possibly_damaging(0.7)	deleterious(0.04)	deleterious(0.601)	HMMPfam_zf-AN1,HMMSmart_SM00154
TMC1	117531	genome.wustl.edu	37	9	75435881	75435881	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138691.2	+1	reviewed	p.A629	0.741	355	0%	246	35%	1	0%	-	-	-	HMMPfam_TMC
ANXA1	301	genome.wustl.edu	37	9	75780077	75780077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000700.1	+1	reviewed	p.V220M	1.000	178	0%	147	33.3%	382	47.3%	benign(0.35)	tolerated(0.08)	neutral(0.411)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
RORB	6096	genome.wustl.edu	37	9	77282812	77282812	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006914.3	+1	reviewed	p.S369Y	1.000	226	0%	118	29.7%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TRPM6	140803	genome.wustl.edu	37	9	77376928	77376928	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.I1553	0.000	270	0%	158	12.7%	4	0%	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77397675	77397675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.P1005Q	1.000	395	0%	238	31.1%	2	50%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Ion_trans
TRPM6	140803	genome.wustl.edu	37	9	77400821	77400821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.A963V	0.998	1022	0%	618	24.9%	2	50%	benign(0.035)	tolerated(0.13)	neutral(0.255)	HMMPfam_Ion_trans
PCSK5	5125	genome.wustl.edu	37	9	78789943	78789943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006200.3	+1	reviewed	p.V600M	0.061	323	0%	252	24.2%	2	0%	benign(0.045)	tolerated(0.1)	neutral(0.289)	superfamily_Galactose-binding domain-like
LOC392352	392352	genome.wustl.edu	37	9	79164516	79164516	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342942.1	-1	model	p.G116	0.980	619	0%	429	29.8%	0	-	-	-	-	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like
PRUNE2	158471	genome.wustl.edu	37	9	79267461	79267461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.D2832G	1.000	939	0%	677	29.4%	2	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79318370	79318370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.D2720V	0.995	132	0%	75	26.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79320387	79320387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.D2268G	0.000	122	0.8%	69	31.9%	1	0%	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79322690	79322690	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426088	-1	known	p.A822T	0.000	88	0%	34	29.4%	0	-	-	-	-	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79323754	79323754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.A1146T	0.926	247	0%	143	31.5%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PRUNE2	158471	genome.wustl.edu	37	9	79326063	79326063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.A376V	0.998	73	0%	45	37.8%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79933486	79933486	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419472	+1	known	p.C17Y	0.007	254	0%	208	32.7%	3	33.3%	-	-	-	NULL
VPS13A	23230	genome.wustl.edu	37	9	79952346	79952346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.L2091I	0.435	291	0%	188	35.1%	6	50%	benign(0.069)	tolerated(0.56)	neutral(0.011)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79974312	79974312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.R2700H	1.000	65	0%	60	28.3%	8	75%	possibly_damaging(0.722)	tolerated(0.1)	deleterious(0.548)	NULL
GNA14	9630	genome.wustl.edu	37	9	80046280	80046280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004297.3	-1	reviewed	p.G184S	1.000	147	0%	68	33.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
GNA14	9630	genome.wustl.edu	37	9	80144029	80144029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004297.3	-1	reviewed	p.A89S	1.000	537	0%	281	27.4%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP78	84131	genome.wustl.edu	37	9	80881400	80881400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.D631N	0.084	281	0%	155	25.2%	34	35.2%	benign(0.009)	tolerated(0.26)	neutral(0.035)	NULL
TLE4	7091	genome.wustl.edu	37	9	82242327	82242327	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007005.3	+1	validated	p.K118	1.000	394	0%	220	28.6%	0	-	-	-	-	HMMPfam_TLE_N
TLE4	7091	genome.wustl.edu	37	9	82335194	82335194	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007005.3	+1	validated	p.N608	1.000	90	0%	62	33.9%	3	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
TLE4	7091	genome.wustl.edu	37	9	82337458	82337458	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376527	+1	known	p.Q446*	1.000	137	0%	86	25.6%	5	0%	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85615856	85615856	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152573.2	-1	provisional	p.S464	0.001	209	0%	101	31.7%	4	50%	-	-	-	NULL
RASEF	158158	genome.wustl.edu	37	9	85622386	85622386	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152573.2	-1	provisional	p.R332*	1.000	398	0.3%	256	31.6%	7	14.2%	-	-	-	NULL
UBQLN1	29979	genome.wustl.edu	37	9	86294806	86294806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013438.4	-1	reviewed	p.L199I	1.000	391	0%	228	23.2%	112	48.2%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMSmart_SM00727
KIF27	55582	genome.wustl.edu	37	9	86451930	86451930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.D1398N	0.184	199	0%	105	24.8%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
NTRK2	4915	genome.wustl.edu	37	9	87366949	87366949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006180.3	+1	reviewed	p.V449I	1.000	124	0%	56	25%	1	0%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
NAA35	60560	genome.wustl.edu	37	9	88593189	88593189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024635.3	+1	validated	p.A257V	1.000	284	0%	214	27.6%	16	43.7%	benign(0.032)	tolerated(0.34)	neutral(0.025)	NULL
NAA35	60560	genome.wustl.edu	37	9	88628737	88628737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024635.3	+1	validated	p.R498H	1.000	253	0%	148	27%	32	37.5%	possibly_damaging(0.682)	deleterious(0)	deleterious(0.688)	NULL
C9orf79	286234	genome.wustl.edu	37	9	90498906	90498906	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178828.4	+1	validated	e2-1	0.074	58	0%	22	18.2%	0	-	-	-	-	-
SHC3	53358	genome.wustl.edu	37	9	91686160	91686160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.A246V	1.000	103	0%	62	25.8%	2	50%	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
SEMA4D	10507	genome.wustl.edu	37	9	91993700	91993700	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006378.3	-1	validated	p.I836	0.000	60	0%	36	38.9%	26	19.2%	-	-	-	NULL
SEMA4D	10507	genome.wustl.edu	37	9	91994234	91994234	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006378.3	-1	validated	p.L658	0.000	213	0%	117	22.2%	28	17.8%	-	-	-	NULL
AUH	549	genome.wustl.edu	37	9	93983203	93983203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001698.2	-1	reviewed	p.L243I	0.994	257	0%	125	22.4%	15	26.6%	benign(0.008)	tolerated(1)	-	HMMPfam_ECH,superfamily_ClpP/crotonase
IARS	3376	genome.wustl.edu	37	9	95022438	95022438	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.A622	0.999	265	0%	154	12.3%	112	33%	-	-	-	HMMPfam_tRNA-synt_1,superfamily_SSF52374
ASPN	54829	genome.wustl.edu	37	9	95237024	95237025	+	In_Frame_Ins	INS	-	-	TCA	rs111419727	byFrequency	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017680.3	-1	validated	p.52in_frame_insD	0.335:0.340	-	-	-	-	-	-	-	-	-	superfamily_SSF52058
FAM22F	54754	genome.wustl.edu	37	9	97081294	97081294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017561.1	-1	validated	p.P575H	0.001	56	0%	22	27.3%	0	-	probably_damaging(0.992)	deleterious(0.03)	deleterious(0.812)	NULL
FAM22F	54754	genome.wustl.edu	37	9	97081922	97081922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434357	-1	known	p.A386T	0.306	229	0%	132	18.2%	1	0%	-	-	-	NULL
C9orf3	84909	genome.wustl.edu	37	9	97730039	97730039	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032823.3	+1	provisional	e7-1	1.000	233	0%	140	12.1%	0	-	-	-	-	-
FANCC	2176	genome.wustl.edu	37	9	97873869	97873869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000136.2	-1	reviewed	p.G402V	1.000	102	0%	59	28.8%	9	22.2%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	HMMPfam_Fanconi_C
PTCH1	5727	genome.wustl.edu	37	9	98224213	98224213	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000264.3	-1	reviewed	p.G876	1.000	112	0.9%	74	32.4%	6	66.6%	-	-	-	HMMPfam_Patched
ENSG00000248797	0	genome.wustl.edu	37	9	98231805	98231805	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512956	+1	known	NULL	0.000	55	0%	32	21.9%	0	-	-	-	-	-
PTCH1	5727	genome.wustl.edu	37	9	98239912	98239912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000264.3	-1	reviewed	p.V474I	1.000	170	0.6%	98	31.6%	9	55.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Patched,superfamily_SSF82866
PTCH1	5727	genome.wustl.edu	37	9	98242313	98242313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000264.3	-1	reviewed	p.M335I	1.000	679	0.3%	353	26.9%	2	50%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Patched
C9orf102	375748	genome.wustl.edu	37	9	98691032	98691032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010895.2	+1	validated	p.A557V	1.000	541	0%	401	26.9%	0	-	possibly_damaging(0.647)	tolerated(0.45)	neutral(0.239)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF367	195828	genome.wustl.edu	37	9	99160587	99160587	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153695.3	-1	validated	p.R144*	1.000	498	0%	297	31.3%	1	0%	-	-	-	NULL
HABP4	22927	genome.wustl.edu	37	9	99227686	99227686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014282.2	+1	validated	p.G194S	0.962	599	0%	321	28.7%	4	50%	benign(0)	tolerated(1)	-	NULL
HABP4	22927	genome.wustl.edu	37	9	99252311	99252311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014282.2	+1	validated	p.A411	0.762	100	0%	62	29%	8	75%	-	-	-	NULL
CDC14B	8555	genome.wustl.edu	37	9	99285992	99285992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033331.2	-1	reviewed	p.T321M	0.993	135	0%	80	10%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
ZNF510	22869	genome.wustl.edu	37	9	99521161	99521161	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014930.1	-1	provisional	p.S651R	1.000	564	0%	394	16.5%	13	30.7%	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	superfamily_C2H2 and C2HC zinc fingers
ENSG00000249385	0	genome.wustl.edu	37	9	99884267	99884267	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504063	-1	known	NULL	0.001	127	0%	71	11.3%	0	-	-	-	-	-
C9orf174	100499483	genome.wustl.edu	37	9	100076692	100076692	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.I342	0.604	51	0%	28	25%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100124087	100124087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.D1203G	0.034	72	1.4%	28	25%	1	0%	benign(0.011)	tolerated(0.96)	neutral(0.001)	NULL
C9orf156	51531	genome.wustl.edu	37	9	100667130	100667130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016481.3	-1	validated	p.A404V	0.480	251	0%	147	24.5%	6	66.6%	benign(0.35)	tolerated(0.53)	neutral(0.118)	NULL
HEMGN	55363	genome.wustl.edu	37	9	100692759	100692759	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018437.3	-1	validated	p.E306	0.989	483	0.2%	295	26.8%	0	-	-	-	-	NULL
ANP32B	10541	genome.wustl.edu	37	9	100760861	100760861	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006401.2	+1	validated	p.I76	0.999	257	0%	173	27.7%	280	49.6%	-	-	-	superfamily_Outer arm dynein light chain 1
CORO2A	7464	genome.wustl.edu	37	9	100919841	100919841	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003389.3	-1	reviewed	p.S34	0.998	123	0.8%	64	31.2%	2	0%	-	-	-	superfamily_WD40 repeat-like,HMMPfam_DUF1899
GABBR2	9568	genome.wustl.edu	37	9	101304165	101304165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005458.7	-1	reviewed	p.R207M	1.000	166	0%	88	15.9%	0	-	possibly_damaging(0.563)	tolerated(0.13)	neutral(0.445)	HMMPfam_ANF_receptor,superfamily_SSF53822
COL15A1	1306	genome.wustl.edu	37	9	101765797	101765797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.E376D	0.800	87	0%	42	23.8%	7	0%	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	NULL
COL15A1	1306	genome.wustl.edu	37	9	101812038	101812038	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.G954*	1.000	209	0%	100	32%	28	0%	-	-	-	superfamily_C-type_lectin_fold
COL15A1	1306	genome.wustl.edu	37	9	101829295	101829295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.L1261	1.000	474	0%	265	29.1%	41	0%	-	-	-	HMMPfam_Endostatin,superfamily_C-type_lectin_fold
COL15A1	1306	genome.wustl.edu	37	9	101832067	101832067	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.L1356	1.000	487	0%	273	34.4%	23	4.3%	-	-	-	HMMPfam_Endostatin,superfamily_C-type_lectin_fold
COL15A1	1306	genome.wustl.edu	37	9	101832124	101832124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001855.3	+1	reviewed	p.V1375I	1.000	471	0.2%	309	13.6%	29	0%	benign(0.216)	-	-	HMMPfam_Endostatin,superfamily_C-type_lectin_fold
SEC61B	10952	genome.wustl.edu	37	9	101992659	101992659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006808.2	+1	reviewed	p.A82T	1.000	484	0.2%	273	26.7%	364	32.6%	possibly_damaging(0.782)	deleterious(0.01)	deleterious(0.699)	HMMPfam_Sec61_beta
KRT8P11	347265	genome.wustl.edu	37	9	102068692	102068692	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409686	+1	known	p.S433	0.490	73	0%	30	36.7%	0	-	-	-	-	NULL
NR4A3	8013	genome.wustl.edu	37	9	102590439	102590439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173200.1	+1	reviewed	p.T50A	1.000	168	0%	61	19.7%	1	0%	benign(0.054)	deleterious(0.02)	neutral(0.387)	NULL
NR4A3	8013	genome.wustl.edu	37	9	102595028	102595028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173200.1	+1	reviewed	p.D348N	1.000	159	0%	110	25.5%	0	-	probably_damaging(0.995)	tolerated(0.16)	deleterious(0.517)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_SSF57716
TEX10	54881	genome.wustl.edu	37	9	103066077	103066077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.R838Q	1.000	259	0.4%	170	29.4%	28	14.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
TEX10	54881	genome.wustl.edu	37	9	103082549	103082549	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.E734*	1.000	145	0%	104	30.8%	24	12.5%	-	-	-	NULL
TEX10	54881	genome.wustl.edu	37	9	103109029	103109029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.Q280H	1.000	441	0%	245	19.2%	14	7.1%	benign(0.059)	tolerated(0.11)	neutral(0.276)	NULL
MSANTD3	91283	genome.wustl.edu	37	9	103204508	103204508	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080655.1	+1	predicted	p.S96	0.403	135	0%	65	27.7%	58	46.5%	-	-	-	NULL
MSANTD3	91283	genome.wustl.edu	37	9	103213122	103213122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080655.1	+1	predicted	p.E234D	1.000	248	0%	147	32%	57	45.6%	possibly_damaging(0.945)	tolerated(0.44)	neutral(0.402)	NULL
BAAT	570	genome.wustl.edu	37	9	104125209	104125209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127610.1	-1	reviewed	p.A253D	0.976	348	0%	258	12%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAAT_C,superfamily_SSF53474
MRPL50	54534	genome.wustl.edu	37	9	104152942	104152942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019051.2	-1	reviewed	p.R95C	0.002	429	0%	298	26.5%	87	33.3%	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMPfam_Ribosomal_S39
ZNF189	7743	genome.wustl.edu	37	9	104170693	104170693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003452.2	+1	validated	p.V215M	0.809	665	0%	436	31.9%	14	50%	probably_damaging(0.983)	tolerated(0.22)	deleterious(0.471)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C9orf125	84302	genome.wustl.edu	37	9	104238299	104238299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032342.1	-1	provisional	p.G359D	1.000	141	0%	85	21.2%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
C9orf125	84302	genome.wustl.edu	37	9	104239329	104239329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032342.1	-1	provisional	p.R16W	0.996	43	0%	30	36.7%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
RNF20	56254	genome.wustl.edu	37	9	104314443	104314443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.R477C	1.000	350	0%	218	27.1%	25	64%	unknown(0)	deleterious(0)	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104319831	104319831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.E779*	1.000	260	0%	144	27.8%	21	4.7%	-	-	-	NULL
RNF20	56254	genome.wustl.edu	37	9	104323512	104323512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.Q883H	1.000	418	0.2%	332	24.7%	19	0%	possibly_damaging(0.868)	deleterious(0.03)	deleterious(0.702)	NULL
RNF20	56254	genome.wustl.edu	37	9	104324596	104324596	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019592.5	+1	reviewed	p.V940	0.981	284	0%	257	13.6%	32	21.8%	-	-	-	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GRIN3A	116443	genome.wustl.edu	37	9	104375805	104375805	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.Y873	0.885	96	0%	47	31.9%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850
GRIN3A	116443	genome.wustl.edu	37	9	104433075	104433075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133445.2	-1	reviewed	p.G540D	1.000	198	0%	143	25.9%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	superfamily_SSF53822,superfamily_SSF53850
SMC2	10592	genome.wustl.edu	37	9	106862483	106862483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042550.1	+1	validated	p.T197M	1.000	83	0%	83	28.9%	1	100%	probably_damaging(0.993)	tolerated(0.13)	deleterious(0.703)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR13C4	138804	genome.wustl.edu	37	9	107289098	107289098	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001919.1	-1	provisional	p.R131	0.996	475	0%	265	26%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR13C3	138803	genome.wustl.edu	37	9	107298248	107298248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001961.1	-1	provisional	p.G283S	0.996	446	0%	307	27.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
OR13C3	138803	genome.wustl.edu	37	9	107298940	107298940	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001961.1	-1	provisional	p.K52M	0.002	300	0%	204	18.1%	0	-	probably_damaging(0.966)	deleterious(0.05)	deleterious(0.753)	superfamily_SSF81321
OR13C5	138799	genome.wustl.edu	37	9	107361026	107361026	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004482.1	-1	provisional	p.L223	0.000	494	0.2%	344	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR13C2	392376	genome.wustl.edu	37	9	107367842	107367842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004481.1	-1	provisional	p.L23I	0.140	677	0%	583	23.7%	0	-	probably_damaging(0.976)	tolerated(0.08)	deleterious(0.718)	superfamily_Family A G protein-coupled receptor-like
OR13D1	286365	genome.wustl.edu	37	9	107457138	107457138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004484.1	+1	provisional	p.L146I	0.923	545	0%	376	28.2%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_7tm_1,superfamily_SSF81321
SLC44A1	23446	genome.wustl.edu	37	9	108125280	108125280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.G360D	1.000	603	0%	320	11.9%	89	22.4%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	HMMPfam_DUF580
TAL2	6887	genome.wustl.edu	37	9	108425083	108425083	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005421.2	+1	reviewed	p.G102	0.662	76	0%	59	15.3%	0	-	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687141	109687141	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.T316	0.270	387	0%	228	27.6%	1	0%	-	-	-	NULL
ZNF462	58499	genome.wustl.edu	37	9	109691327	109691327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.L1712M	0.998	110	0.9%	51	21.6%	2	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00355,superfamily_beta-sandwich domain of Sec23/24
PTPN3	5774	genome.wustl.edu	37	9	112144613	112144613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002829.3	-1	reviewed	p.V833M	0.936	76	0%	53	37.7%	46	32.6%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
PTPN3	5774	genome.wustl.edu	37	9	112219590	112219590	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002829.3	-1	reviewed	p.D76	0.935	306	0%	142	26.1%	19	68.4%	-	-	-	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
PALM2	114299	genome.wustl.edu	37	9	112705112	112705112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053016.5	+1	validated	p.R217C	1.000	166	0%	93	25.8%	3	100%	probably_damaging(0.959)	tolerated(0.06)	deleterious(0.725)	HMMPfam_Paralemmin
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899299	112899299	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.S492L	1.000	122	0%	66	25.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112899774	112899774	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.S650	0.018	211	0%	93	10.8%	5	0%	-	-	-	NULL
C9orf152	401546	genome.wustl.edu	37	9	112963591	112963591	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012993.2	-1	validated	p.T119	0.937	387	0%	215	29.3%	55	43.6%	-	-	-	NULL
SVEP1	79987	genome.wustl.edu	37	9	113168736	113168736	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.A3048	1.000	139	0%	94	27.7%	1	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SVEP1	79987	genome.wustl.edu	37	9	113212500	113212500	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.N1314	1.000	509	0%	301	26.6%	1	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
KIAA0368	23392	genome.wustl.edu	37	9	114134096	114134096	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080398.1	-1	provisional	p.G1692	0.996	513	0.2%	342	28.4%	93	39.7%	-	-	-	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114136277	114136277	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080398.1	-1	provisional	p.C1562	1.000	669	0.1%	431	25.3%	106	47.1%	-	-	-	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114140973	114140973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080398.1	-1	provisional	p.A1459T	1.000	240	0.4%	141	35.5%	107	47.6%	benign(0.006)	tolerated(0.28)	neutral(0.032)	superfamily_ARM repeat
KIAA0368	23392	genome.wustl.edu	37	9	114184213	114184213	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080398.1	-1	provisional	p.S659	0.001	137	0%	117	32.5%	45	55.5%	-	-	-	superfamily_ARM repeat
C9orf84	158401	genome.wustl.edu	37	9	114456192	114456192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173521.3	-1	validated	p.P1054S	1.000	183	0%	154	16.2%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
PTBP3	9991	genome.wustl.edu	37	9	114986255	114986255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005156.5	-1	validated	p.R512H	1.000	424	0%	317	27.1%	60	35%	benign(0.011)	tolerated(0.4)	neutral(0.017)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PTBP3	9991	genome.wustl.edu	37	9	115038150	115038150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005156.5	-1	validated	p.L88I	1.000	261	0%	179	25.1%	13	23%	benign(0.009)	tolerated(0.66)	neutral(0.003)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
C9orf80	58493	genome.wustl.edu	37	9	115451892	115451892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021218.1	-1	provisional	p.A45V	0.469	157	0%	118	26.3%	41	48.7%	benign(0.007)	tolerated(0.12)	neutral(0.261)	NULL
ZFP37	7539	genome.wustl.edu	37	9	115805918	115805918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003408.1	-1	provisional	p.G327E	1.000	474	0%	305	31.1%	2	50%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FKBP15	23307	genome.wustl.edu	37	9	115962134	115962134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015258.1	-1	validated	p.A203V	1.000	61	0%	40	10%	18	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_FKBP_C,superfamily_FKBP-like
ALAD	210	genome.wustl.edu	37	9	116150638	116150638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000031.5	-1	reviewed	p.A312D	1.000	90	0%	44	20.5%	31	45.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ALAD,superfamily_SSF51569
RGS3	5998	genome.wustl.edu	37	9	116303619	116303619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017790.3	+1	reviewed	p.S574Y	1.000	474	0%	227	15%	5	40%	possibly_damaging(0.708)	deleterious(0.02)	deleterious(0.639)	NULL
ZNF618	114991	genome.wustl.edu	37	9	116812207	116812207	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133374.2	+1	validated	p.Y782	0.580	191	0.5%	91	12.1%	5	0%	-	-	-	HMMPfam_hATC
AKNA	80709	genome.wustl.edu	37	9	117113202	117113202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030767.4	-1	validated	p.A1053V	0.001	41	0%	20	30%	14	28.5%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
DFNB31	25861	genome.wustl.edu	37	9	117168652	117168652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015404.3	-1	reviewed	p.A740V	1.000	77	0%	43	16.3%	13	7.6%	possibly_damaging(0.488)	deleterious(0.02)	deleterious(0.545)	NULL
DFNB31	25861	genome.wustl.edu	37	9	117186643	117186643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015404.3	-1	reviewed	p.L463M	0.996	89	0%	44	20.5%	10	50%	possibly_damaging(0.932)	deleterious(0.03)	deleterious(0.743)	NULL
TNFSF15	9966	genome.wustl.edu	37	9	117568136	117568136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005118.2	-1	reviewed	p.Y53H	0.991	65	1.5%	35	25.7%	0	-	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	NULL
TNC	3371	genome.wustl.edu	37	9	117783544	117783544	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.G2166	0.239	87	0%	35	34.3%	64	12.5%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
TNC	3371	genome.wustl.edu	37	9	117808938	117808938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.L1626I	1.000	204	0%	164	26.2%	17	11.7%	possibly_damaging(0.796)	tolerated(0.25)	neutral(0.336)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TNC	3371	genome.wustl.edu	37	9	117848618	117848618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.D464E	1.000	322	0%	182	30.2%	17	11.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2
PAPPA	5069	genome.wustl.edu	37	9	119129943	119129943	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.S1505	0.613	77	0%	48	35.4%	0	-	-	-	-	superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119144734	119144734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.G1580S	1.000	289	0%	195	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486
TRIM32	22954	genome.wustl.edu	37	9	119460400	119460400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.D127N	0.458	137	0%	50	36%	24	33.3%	benign(0.011)	tolerated(0.21)	neutral(0.044)	HMMSmart_BBOX
TRIM32	22954	genome.wustl.edu	37	9	119460897	119460897	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.G292	0.756	165	0%	88	11.4%	20	20%	-	-	-	NULL
TRIM32	22954	genome.wustl.edu	37	9	119461766	119461766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.C582Y	1.000	204	0%	101	16.8%	29	17.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_NHL,superfamily_SSF101898
TRIM32	22954	genome.wustl.edu	37	9	119461829	119461829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099679.1	+1	reviewed	p.P603H	1.000	230	0%	125	24%	21	57.1%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_SSF101898
ASTN2	23245	genome.wustl.edu	37	9	119626004	119626004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.A633V	1.000	139	0%	60	31.7%	1	100%	possibly_damaging(0.496)	tolerated(0.12)	neutral(0.426)	NULL
TLR4	7099	genome.wustl.edu	37	9	120475328	120475328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138554.3	+1	reviewed	p.T308A	0.010	302	0%	232	28.4%	5	20%	benign(0)	tolerated(1)	-	superfamily_L domain-like
TLR4	7099	genome.wustl.edu	37	9	120476680	120476680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138554.3	+1	reviewed	p.Q758H	1.000	162	0%	109	24.8%	9	22.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
DBC1	1620	genome.wustl.edu	37	9	121929864	121929864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014618.2	-1	validated	p.S595N	1.000	206	0%	99	27.3%	0	-	possibly_damaging(0.454)	tolerated(0.06)	deleterious(0.471)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123156812	123156812	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000345313	-1	known	e35-1	1.000	137	0%	54	29.6%	30	43.3%	-	-	-	-
CDK5RAP2	55755	genome.wustl.edu	37	9	123215893	123215893	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.T878	0.005	382	0%	236	25%	19	57.8%	-	-	-	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123232432	123232432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.R642Q	0.001	69	1.4%	45	22.2%	10	70%	benign(0.012)	tolerated(0.44)	neutral(0.013)	NULL
CDK5RAP2	55755	genome.wustl.edu	37	9	123308040	123308040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018249.4	-1	reviewed	p.S112N	1.000	196	0%	126	25.4%	7	14.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Microtub_assoc
PSMD5	5711	genome.wustl.edu	37	9	123594214	123594214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.I110V	1.000	295	0%	223	29.1%	30	40%	benign(0.004)	tolerated(1)	-	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
C5	727	genome.wustl.edu	37	9	123731354	123731354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001735.2	-1	reviewed	p.I1402T	0.877	400	0%	269	24.9%	0	-	possibly_damaging(0.914)	deleterious(0.01)	deleterious(0.772)	superfamily_AM_receptor_bind
CNTRL	11064	genome.wustl.edu	37	9	123903678	123903678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.V835I	0.997	301	0%	215	22.8%	2	50%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Prefoldin
CNTRL	11064	genome.wustl.edu	37	9	123914958	123914958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.R1387C	1.000	223	0%	195	29.7%	5	60%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
CNTRL	11064	genome.wustl.edu	37	9	123920336	123920336	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.S1571	0.037	339	0%	267	24.7%	5	40%	-	-	-	NULL
GSN	2934	genome.wustl.edu	37	9	124076247	124076247	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000177.4	+1	reviewed	p.T284	0.000	71	0%	27	22.2%	121	18.1%	-	-	-	superfamily_Actin depolymerizing proteins
TTLL11	158135	genome.wustl.edu	37	9	124752050	124752050	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139442.1	-1	validated	e4-1	1.000	387	0%	209	18.7%	0	-	-	-	-	-
NDUFA8	4702	genome.wustl.edu	37	9	124914671	124914671	+	Missense_Mutation	SNP	G	G	A	rs190678946	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014222.2	-1	reviewed	p.A23V	1.000	194	0%	132	23.5%	58	13.7%	possibly_damaging(0.572)	tolerated(0.1)	deleterious(0.482)	NULL
PTGS1	5742	genome.wustl.edu	37	9	125145787	125145787	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000962.2	+1	reviewed	e8-1	1.000	56	0%	24	16.7%	0	-	-	-	-	-
PTGS1	5742	genome.wustl.edu	37	9	125152496	125152496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000962.2	+1	reviewed	p.M439T	0.214	42	0%	26	30.8%	6	0%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
OR1N2	138882	genome.wustl.edu	37	9	125315898	125315898	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004457.1	+1	provisional	p.S150	0.001	622	0.2%	436	25.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR1L1	26737	genome.wustl.edu	37	9	125424190	125424190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005236.3	+1	validated	p.L116M	0.003	842	0.1%	487	27.1%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_7tm_1,superfamily_SSF81321
PDCL	5082	genome.wustl.edu	37	9	125588973	125588973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005388.3	-1	reviewed	p.R32*	0.000	130	0%	57	42.1%	14	64.2%	-	-	-	NULL
RC3H2	54542	genome.wustl.edu	37	9	125621235	125621235	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100588.1	-1	validated	p.R666*	1.000	320	0%	175	31.4%	7	14.2%	-	-	-	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125748674	125748674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.P189L	1.000	526	0%	317	19.2%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
RABGAP1	23637	genome.wustl.edu	37	9	125835945	125835945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.R700C	1.000	630	0%	376	31.1%	11	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
CRB2	286204	genome.wustl.edu	37	9	126125151	126125151	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173689.5	+1	validated	p.V34	0.000	57	0%	22	45.5%	0	-	-	-	-	NULL
LHX2	9355	genome.wustl.edu	37	9	126794938	126794938	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446480	+1	known	p.P397S	0.934	92	0%	50	28%	1	0%	-	-	-	NULL
PSMB7	5695	genome.wustl.edu	37	9	127176280	127176280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002799.2	-1	reviewed	p.G54V	1.000	78	1.3%	56	10.7%	244	15.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,PatternScan_PROTEASOME_B,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
OLFML2A	169611	genome.wustl.edu	37	9	127572218	127572218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.V496M	1.000	98	0%	39	25.6%	2	0%	probably_damaging(0.994)	tolerated(0.08)	deleterious(0.752)	HMMPfam_OLF,HMMSmart_SM00284
WDR38	401551	genome.wustl.edu	37	9	127619674	127619674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045476.1	+1	provisional	p.C267Y	0.942	87	0%	36	36.1%	2	0%	probably_damaging(0.996)	tolerated(0.48)	deleterious(0.472)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
GOLGA1	2800	genome.wustl.edu	37	9	127651789	127651789	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.D508	0.000	804	0.1%	407	29.2%	11	54.5%	-	-	-	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127652717	127652717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.A483V	1.000	376	0%	153	28.8%	17	23.5%	probably_damaging(0.989)	tolerated(0.25)	deleterious(0.476)	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127660869	127660869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.R456C	0.235	239	0%	137	24.1%	2	50%	benign(0.004)	tolerated(0.07)	neutral(0.319)	NULL
HSPA5	3309	genome.wustl.edu	37	9	128001740	128001740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005347.3	-1	validated	p.T189P	1.000	129	0%	91	28.6%	644	47%	benign(0.352)	deleterious(0)	deleterious(0.556)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
GAPVD1	26130	genome.wustl.edu	37	9	128086183	128086183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.Q613H	1.000	190	0%	106	22.6%	12	33.3%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128099345	128099345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.A853V	1.000	184	0%	88	23.9%	12	58.3%	probably_damaging(0.979)	tolerated(0.43)	neutral(0.435)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128118094	128118094	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.L1337R	1.000	183	0%	110	15.5%	27	14.8%	benign(0.233)	tolerated(0.35)	neutral(0.044)	superfamily_SSF109993
PBX3	5090	genome.wustl.edu	37	9	128728314	128728314	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024122.1	+1	validated	NULL	1.000	223	0%	101	29.7%	0	-	-	-	-	-
ZBTB34	403341	genome.wustl.edu	37	9	129642865	129642865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099270.1	+1	validated	p.R392Q	1.000	58	0%	24	16.7%	5	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RALGPS1	9649	genome.wustl.edu	37	9	129831610	129831610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014636.1	+1	provisional	p.K195N	1.000	313	0%	210	11%	1	0%	possibly_damaging(0.804)	tolerated(0.15)	deleterious(0.543)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
ANGPTL2	23452	genome.wustl.edu	37	9	129853995	129853995	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012098.2	-1	reviewed	p.N412	0.033	648	0%	309	26.9%	8	0%	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_FBG,superfamily_Fibrinogen_a/b/g_C
ZNF79	7633	genome.wustl.edu	37	9	130191132	130191132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007135.2	+1	validated	p.A13V	0.000	113	0%	62	11.3%	8	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
ZNF79	7633	genome.wustl.edu	37	9	130207086	130207086	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007135.2	+1	validated	p.A369	1.000	394	0%	221	27.6%	5	60%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
FAM129B	64855	genome.wustl.edu	37	9	130293979	130293979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022833.2	-1	validated	p.R45H	1.000	87	0%	38	36.8%	113	43.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ST6GALNAC6	30815	genome.wustl.edu	37	9	130649821	130649821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013443.3	-1	provisional	p.A252T	1.000	20	0%	11	54.5%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
DPM2	8818	genome.wustl.edu	37	9	130698804	130698804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000373110	-1	known	p.P75H	0.092	40	2.5%	23	30.4%	0	-	benign(0.073)	deleterious(0.01)	neutral(0.411)	NULL
ODF2	4957	genome.wustl.edu	37	9	131256998	131256998	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153437.1	+1	reviewed	p.R635	0.993	96	0%	36	33.3%	1	0%	-	-	-	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131329152	131329152	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R45*	1.000	254	0.4%	130	34.6%	11	0%	-	-	-	HMMPfam_Spectrin,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131346611	131346611	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.G748	0.999	171	0%	110	33.6%	27	77.7%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131367443	131367443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.A1284T	1.000	152	0%	104	41.3%	51	9.8%	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131371247	131371247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.V1529D	1.000	277	0.4%	158	27.8%	76	71%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTAN1	6709	genome.wustl.edu	37	9	131388167	131388167	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.H2063	0.945	160	0%	78	29.5%	118	5.9%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SET	6418	genome.wustl.edu	37	9	131455936	131455936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122821.1	+1	validated	p.S184I	1.000	75	0%	43	25.6%	762	48.8%	possibly_damaging(0.459)	tolerated(0.11)	neutral(0.422)	HMMPfam_NAP
ZER1	10444	genome.wustl.edu	37	9	131497695	131497695	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.I686	1.000	37	0%	15	40%	35	11.4%	-	-	-	superfamily_ARM-type_fold
ZER1	10444	genome.wustl.edu	37	9	131515546	131515546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.A215S	0.987	23	0%	13	30.8%	15	6.6%	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_SSF52047
ZER1	10444	genome.wustl.edu	37	9	131515712	131515712	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.N159	1.000	59	0%	34	35.3%	15	73.3%	-	-	-	superfamily_SSF52047
TBC1D13	54662	genome.wustl.edu	37	9	131550664	131550664	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018201.3	+1	validated	p.K25	1.000	123	0%	71	26.8%	14	50%	-	-	-	superfamily_RabGAP_TBC
NUP188	23511	genome.wustl.edu	37	9	131721110	131721110	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015354.1	+1	validated	p.T134	0.994	226	0.4%	108	25.9%	17	41.1%	-	-	-	HMMPfam_Nup188
NUP188	23511	genome.wustl.edu	37	9	131752494	131752494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015354.1	+1	validated	p.R877C	1.000	418	0%	261	29.1%	34	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup188
SH3GLB2	56904	genome.wustl.edu	37	9	131777084	131777084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020145.2	-1	provisional	p.R145H	1.000	156	0%	84	35.7%	32	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR,HMMSmart_SM00721
C9orf78	51759	genome.wustl.edu	37	9	132591525	132591525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016520.2	-1	validated	p.R246Q	0.999	59	0%	32	40.6%	110	55.4%	probably_damaging(0.998)	tolerated(0.46)	deleterious(0.486)	NULL
USP20	10868	genome.wustl.edu	37	9	132637029	132637029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008563.3	+1	validated	p.A639T	1.000	45	0%	26	50%	13	46.1%	possibly_damaging(0.924)	deleterious(0.02)	deleterious(0.756)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
FNBP1	23048	genome.wustl.edu	37	9	132662307	132662307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015033.2	-1	reviewed	p.E542K	1.000	336	0%	192	25.5%	21	33.3%	benign(0.408)	tolerated(0.09)	neutral(0.428)	superfamily_SH3-domain
FUBP3	8939	genome.wustl.edu	37	9	133506171	133506171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003934.1	+1	validated	p.V425A	1.000	41	0%	27	37%	65	43%	possibly_damaging(0.793)	deleterious(0)	deleterious(0.742)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ABL1	25	genome.wustl.edu	37	9	133730285	133730285	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.T136	0.018	237	0.8%	167	24.6%	28	35.7%	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
ABL1	25	genome.wustl.edu	37	9	133755537	133755537	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.I521	0.995	113	0%	55	25.5%	34	58.8%	-	-	-	NULL
ABL1	25	genome.wustl.edu	37	9	133760748	133760748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.S1043N	0.998	73	0%	25	40%	46	56.5%	benign(0.106)	tolerated(0.24)	neutral(0.045)	HMMPfam_F_actin_bind,HMMSmart_SM00808
NUP214	8021	genome.wustl.edu	37	9	134064444	134064444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005085.2	+1	reviewed	p.S1167Y	0.243	384	0%	187	34.8%	23	60.8%	unknown(0)	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134346181	134346181	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013318.3	+1	validated	p.L640	1.000	47	0%	23	30.4%	36	52.7%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134357931	134357931	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451855	+1	known	p.K452E	1.000	141	0%	43	32.6%	34	50%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134360387	134360387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013318.3	+1	validated	p.S1873I	1.000	107	0%	63	34.9%	55	45.4%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SETX	23064	genome.wustl.edu	37	9	135205029	135205029	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015046.5	-1	reviewed	p.V652	0.000	480	0%	255	10.2%	2	0%	-	-	-	NULL
TTF1	7270	genome.wustl.edu	37	9	135251547	135251547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.D825N	1.000	140	0%	89	34.8%	16	37.5%	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	NULL
GTF3C4	9329	genome.wustl.edu	37	9	135553406	135553406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012204.2	+1	validated	p.A134T	1.000	137	0%	61	31.1%	13	38.4%	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	NULL
TSC1	7248	genome.wustl.edu	37	9	135781379	135781379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.A529V	0.003	60	0%	34	41.2%	4	50%	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMPfam_Hamartin
GBGT1	26301	genome.wustl.edu	37	9	136029224	136029224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021996.4	-1	validated	p.G262W	0.396	41	0%	19	21.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_6,superfamily_Nucleotide-diphospho-sugar transferases
SURF6	6838	genome.wustl.edu	37	9	136198948	136198948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006753.4	-1	reviewed	p.K281N	0.542	69	0%	42	28.6%	24	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SURF6
MED22	6837	genome.wustl.edu	37	9	136211069	136211069	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133640.3	-1	reviewed	p.L108	1.000	122	0%	51	35.3%	20	45%	-	-	-	HMMPfam_SURF5
MED22	6837	genome.wustl.edu	37	9	136212099	136212099	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133640.3	-1	reviewed	p.D44	0.986	39	0%	20	40%	14	21.4%	-	-	-	HMMPfam_SURF5
C9orf96	169436	genome.wustl.edu	37	9	136249664	136249664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153710.3	+1	validated	p.A67T	0.824	186	0%	119	26.9%	1	100%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COL5A1	1289	genome.wustl.edu	37	9	137697049	137697049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.P1083S	1.000	54	0%	18	27.8%	15	0%	unknown(0)	tolerated(0.07)	-	HMMPfam_Collagen
CAMSAP1	157922	genome.wustl.edu	37	9	138714642	138714642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015447.3	-1	validated	p.S622N	0.002	93	0%	57	21.1%	6	33.3%	benign(0.004)	deleterious(0.04)	neutral(0.349)	NULL
QSOX2	169714	genome.wustl.edu	37	9	139118663	139118663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181701.3	-1	validated	p.A129V	0.935	188	0%	88	19.3%	5	60%	unknown(0)	tolerated(0.09)	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
SDCCAG3	10807	genome.wustl.edu	37	9	139298517	139298517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039707.1	-1	validated	p.A400S	0.000	59	0%	24	20.8%	68	25%	benign(0.001)	tolerated(0.58)	neutral(0.005)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139357582	139357582	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.T1550	0.876	87	1.1%	39	30.8%	63	47.6%	-	-	-	NULL
SEC16A	9919	genome.wustl.edu	37	9	139361443	139361443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014866.1	-1	validated	p.A1299T	0.000	20	0%	13	46.2%	68	45.5%	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
PNPLA7	375775	genome.wustl.edu	37	9	140374830	140374830	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.R838	1.000	43	0%	23	26.1%	6	16.6%	-	-	-	NULL
PNPLA7	375775	genome.wustl.edu	37	9	140400154	140400154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098537.1	-1	validated	p.S462N	0.000	82	0%	32	28.1%	6	50%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
EHMT1	79813	genome.wustl.edu	37	9	140705941	140705941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460843	+1	known	p.A914V	0.999	52	0%	24	16.7%	38	47.3%	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CACNA1B	774	genome.wustl.edu	37	9	140901290	140901290	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.G682	0.996	37	0%	27	25.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
DIP2C	22982	genome.wustl.edu	37	10	408595	408595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.L877M	0.994	75	0%	31	35.5%	7	85.7%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	454921	454921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.S365I	1.000	84	0%	39	38.5%	1	100%	benign(0.013)	tolerated(0.07)	neutral(0.320)	HMMPfam_AMP-binding,superfamily_SSF56801
DIP2C	22982	genome.wustl.edu	37	10	518420	518420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.R76H	1.000	56	0%	35	20%	1	0%	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_DMAP_binding
IDI2	91734	genome.wustl.edu	37	10	1065490	1065490	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033261.2	-1	provisional	p.P217	0.001	154	0%	77	40.3%	11	45.4%	-	-	-	NULL
IDI2-AS1	55853	genome.wustl.edu	37	10	1068614	1068614	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024628.1	+1	validated	NULL	0.051	125	0%	55	23.6%	0	-	-	-	-	-
ADARB2	105	genome.wustl.edu	37	10	1421325	1421325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.A44D	1.000	164	0.6%	83	21.7%	0	-	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	NULL
PITRM1	10531	genome.wustl.edu	37	10	3181220	3181220	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.T931	0.319	227	0%	100	38%	136	52.9%	-	-	-	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
PITRM1	10531	genome.wustl.edu	37	10	3189426	3189426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014889.2	-1	validated	p.R751M	1.000	160	0.6%	81	22.2%	73	50.6%	possibly_damaging(0.846)	deleterious(0.01)	deleterious(0.731)	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_M16C_assoc
AKR1E2	83592	genome.wustl.edu	37	10	4889714	4889714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040177.1	+1	provisional	p.E319K	0.002	234	0%	118	24.6%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_NAD(P)-linked oxidoreductase
TUBAL3	79861	genome.wustl.edu	37	10	5435831	5435831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024803.2	-1	validated	p.V330	1.000	187	0%	104	21.2%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
NET1	10276	genome.wustl.edu	37	10	5494850	5494850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001047160.1	+1	validated	p.Q187H	1.000	230	0%	114	16.7%	26	7.6%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CALML5	51806	genome.wustl.edu	37	10	5541282	5541282	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017422.4	-1	reviewed	p.T40	1.000	123	0%	53	34%	0	-	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
CALML5	51806	genome.wustl.edu	37	10	5541325	5541325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017422.4	-1	reviewed	p.G26D	0.937	96	0%	49	16.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
FAM208B	54906	genome.wustl.edu	37	10	5791968	5791968	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.K2195T	0.986	80	0%	50	12%	44	15.9%	possibly_damaging(0.81)	deleterious(0.05)	deleterious(0.650)	NULL
GDI2	2665	genome.wustl.edu	37	10	5815880	5815880	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001494.3	-1	reviewed	p.T248	0.999	357	0.3%	228	24.1%	301	38.8%	-	-	-	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
ANKRD16	54522	genome.wustl.edu	37	10	5925029	5925029	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009941.2	-1	validated	p.G263	0.003	90	0%	39	33.3%	21	61.9%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FBXO18	84893	genome.wustl.edu	37	10	5957517	5957517	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032807.3	+1	reviewed	p.Y567	0.000	98	0%	48	27.1%	42	26.1%	-	-	-	superfamily_SSF52540
SFMBT2	57713	genome.wustl.edu	37	10	7423794	7423794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029880.1	-1	provisional	p.G23S	0.012	191	0%	118	16.9%	0	-	benign(0.002)	tolerated(0.38)	neutral(0.018)	NULL
ENSG00000234306	0	genome.wustl.edu	37	10	10408185	10408185	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455871	-1	known	NULL	0.877	5	0.000	4	1.000	0	-	-	-	-	-
UPF2	26019	genome.wustl.edu	37	10	12009410	12009410	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015542.2	-1	reviewed	p.T666N	1.000	136	0%	93	16.1%	19	31.5%	benign(0.01)	deleterious(0.02)	neutral(0.384)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
DHTKD1	55526	genome.wustl.edu	37	10	12143062	12143062	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448829	+1	known	p.W144*	1.000	252	0%	154	25.3%	14	35.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Transket_pyr,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
DHTKD1	55526	genome.wustl.edu	37	10	12162221	12162221	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018706.5	+1	validated	p.P871	0.907	307	0%	192	29.2%	27	51.8%	-	-	-	NULL
NUDT5	11164	genome.wustl.edu	37	10	12214779	12214779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014142.2	-1	validated	p.P158T	0.993	101	0%	66	16.7%	133	19.5%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_NUDIX,superfamily_Nudix
OPTN	10133	genome.wustl.edu	37	10	13166003	13166003	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008211.1	+1	reviewed	p.S297	0.997	131	0%	70	20%	14	7.1%	-	-	-	NULL
MCM10	55388	genome.wustl.edu	37	10	13230881	13230881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182751.2	+1	validated	p.R407C	0.502	240	0%	142	28.2%	8	62.5%	possibly_damaging(0.693)	tolerated(0.18)	neutral(0.304)	HMMPfam_zf-primase
MCM10	55388	genome.wustl.edu	37	10	13233394	13233394	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182751.2	+1	validated	p.K505T	0.988	134	0%	77	26%	9	55.5%	possibly_damaging(0.692)	tolerated(0.2)	neutral(0.296)	NULL
MCM10	55388	genome.wustl.edu	37	10	13234478	13234478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182751.2	+1	validated	p.I553T	0.998	157	0%	83	10.8%	12	16.6%	benign(0.086)	tolerated(0.14)	neutral(0.256)	HMMPfam_Mcm10
PHYH	5264	genome.wustl.edu	37	10	13325728	13325728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006214.3	-1	reviewed	p.H264N	1.000	630	0%	379	31.1%	56	44.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PhyH
PRPF18	8559	genome.wustl.edu	37	10	13653654	13653654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003675.3	+1	reviewed	p.D184Y	1.000	320	0%	186	32.8%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Functional domain of the splicing factor Prp18
NMT2	9397	genome.wustl.edu	37	10	15154819	15154819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004808.2	-1	reviewed	p.S438	0.361	113	0%	50	24%	18	33.3%	-	-	-	HMMPfam_NMT_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
NMT2	9397	genome.wustl.edu	37	10	15177311	15177311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004808.2	-1	reviewed	p.R118I	1.000	178	0%	99	21.2%	9	11.1%	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM171A1	221061	genome.wustl.edu	37	10	15255150	15255150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.L813M	1.000	98	0%	44	31.8%	26	34.6%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_UPF0560
FAM171A1	221061	genome.wustl.edu	37	10	15325886	15325886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.R106W	1.000	176	0%	91	30.8%	20	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0560
ITGA8	8516	genome.wustl.edu	37	10	15628613	15628613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.I781T	1.000	140	0%	83	18.1%	0	-	benign(0.074)	deleterious(0)	neutral(0.450)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ITGA8	8516	genome.wustl.edu	37	10	15650264	15650264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.V527I	0.076	487	0%	335	29.6%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
CUBN	8029	genome.wustl.edu	37	10	16871010	16871010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.G3520C	0.999	178	0.6%	77	31.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16949618	16949618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.V2532I	0.027	182	0%	111	20.7%	0	-	benign(0.017)	tolerated(0.4)	neutral(0.017)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16955841	16955841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.T2501M	0.000	400	0%	249	32.1%	0	-	possibly_damaging(0.527)	tolerated(0.05)	deleterious(0.523)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	16990557	16990557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.S1710I	0.980	74	0%	52	46.2%	0	-	possibly_damaging(0.819)	deleterious(0.03)	deleterious(0.674)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17089482	17089482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.A1087V	0.995	216	0%	139	23%	0	-	benign(0.246)	tolerated(0.57)	neutral(0.031)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17156069	17156069	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.C280	0.663	40	0%	25	40%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
CUBN	8029	genome.wustl.edu	37	10	17156164	17156164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.A249T	0.088	47	0%	31	29%	0	-	benign(0.1)	tolerated(0.41)	neutral(0.022)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
CUBN	8029	genome.wustl.edu	37	10	17164794	17164794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.S198I	1.000	214	0.5%	112	24.1%	0	-	benign(0.288)	tolerated(0.12)	neutral(0.349)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TRDMT1	1787	genome.wustl.edu	37	10	17195499	17195499	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000488990	-1	known	p.W238*	0.068	74	0%	45	15.6%	0	-	-	-	-	superfamily_SSF53335
LOC100287578	100287578	genome.wustl.edu	37	10	17272454	17272454	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342963.1	-1	model	p.N147K	0.001	30	0%	12	33.3%	0	-	-	-	-	NULL
STAM	8027	genome.wustl.edu	37	10	17756549	17756549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003473.2	+1	reviewed	p.V465I	1.000	394	0%	217	25.3%	32	46.8%	benign(0.003)	tolerated(0.57)	neutral(0.006)	NULL
MRC1	4360	genome.wustl.edu	37	10	17898264	17898264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009567.1	+1	reviewed	p.A474T	1.000	61	0%	30	30%	1	0%	possibly_damaging(0.729)	tolerated(0.44)	neutral(0.278)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
CACNB2	783	genome.wustl.edu	37	10	18827217	18827217	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.L471I	0.997	444	0%	273	23.4%	0	-	possibly_damaging(0.811)	tolerated(0.07)	deleterious(0.625)	HMMPfam_Ca_channel_B,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNB2	783	genome.wustl.edu	37	10	18828295	18828295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.R542H	1.000	99	0%	59	18.6%	2	0%	possibly_damaging(0.895)	tolerated(0.06)	deleterious(0.675)	NULL
CACNB2	783	genome.wustl.edu	37	10	18828488	18828488	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.R606	1.000	110	0%	72	31.9%	0	-	-	-	-	NULL
CACNB2	783	genome.wustl.edu	37	10	18828550	18828550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201596.2	+1	reviewed	p.R627H	0.994	149	0%	82	25.6%	0	-	probably_damaging(0.988)	tolerated(0.19)	deleterious(0.487)	NULL
PLXDC2	84898	genome.wustl.edu	37	10	20500656	20500656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032812.7	+1	provisional	p.E374*	1.000	141	0%	106	17.9%	3	0%	-	-	-	NULL
PLXDC2	84898	genome.wustl.edu	37	10	20506425	20506425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032812.7	+1	provisional	p.A398V	0.000	414	0%	337	23.4%	7	0%	benign(0.002)	tolerated(0.28)	neutral(0.032)	NULL
NEBL	10529	genome.wustl.edu	37	10	21139390	21139390	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006393.2	-1	reviewed	p.P350	0.003	222	0%	175	10.9%	0	-	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24833075	24833075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.A1626T	0.000	924	0%	516	32%	47	36.1%	benign(0)	tolerated(1)	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24896783	24896783	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.A824	0.970	337	0.3%	212	24.1%	18	50%	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25886806	25886806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.G751C	1.000	649	0%	473	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR158	57512	genome.wustl.edu	37	10	25887955	25887955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.L1134I	1.000	245	0%	189	27.5%	0	-	benign(0.059)	tolerated(0.17)	neutral(0.063)	NULL
GPR158	57512	genome.wustl.edu	37	10	25888147	25888147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.A1198T	1.000	206	0%	141	32.6%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26385500	26385500	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.Y555	1.000	535	0%	358	33.2%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYO3A	53904	genome.wustl.edu	37	10	26465695	26465695	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.Q1453	1.000	196	0%	102	27.5%	0	-	-	-	-	NULL
GAD2	2572	genome.wustl.edu	37	10	26581832	26581832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000818.2	+1	reviewed	p.P499H	1.000	809	0.1%	524	10.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
APBB1IP	54518	genome.wustl.edu	37	10	26800776	26800776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019043.3	+1	validated	p.T211N	1.000	155	0%	98	23.5%	7	0%	possibly_damaging(0.643)	tolerated(0.53)	neutral(0.233)	HMMPfam_RA,HMMSmart_RA
PDSS1	23590	genome.wustl.edu	37	10	27009168	27009168	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014317.3	+1	reviewed	p.R163	0.025	153	0%	112	30.4%	13	46.1%	-	-	-	HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases
ANKRD26	22852	genome.wustl.edu	37	10	27324130	27324130	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.T1083	0.000	568	0%	348	16.1%	2	50%	-	-	-	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27324610	27324610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.M923I	0.005	208	0%	145	21.4%	4	50%	benign(0.006)	tolerated(0.29)	neutral(0.029)	NULL
ANKRD26	22852	genome.wustl.edu	37	10	27326119	27326119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014915.2	-1	validated	p.S898Y	0.962	344	0.6%	233	27.9%	4	100%	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	NULL
YME1L1	10730	genome.wustl.edu	37	10	27406637	27406637	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139312.1	-1	reviewed	p.V586	1.000	463	0%	303	13.9%	121	25.6%	-	-	-	HMMPfam_Peptidase_M41,superfamily_P-loop containing nucleoside triphosphate hydrolases
MASTL	84930	genome.wustl.edu	37	10	27458963	27458963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.G359C	0.069	267	0%	154	27.9%	10	50%	benign(0.005)	tolerated(0.28)	neutral(0.032)	superfamily_Kinase_like
LOC100288039	100288039	genome.wustl.edu	37	10	27577639	27577639	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342965.1	+1	model	p.S147	0.998	144	0%	105	27.6%	0	-	-	-	-	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27702459	27702459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.V241M	0.000	60	0%	49	16.3%	0	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_Patched
PTCHD3	374308	genome.wustl.edu	37	10	27702802	27702802	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.T126	0.266	59	0%	31	29%	0	-	-	-	-	NULL
MKX	283078	genome.wustl.edu	37	10	28030394	28030394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173576.2	-1	validated	p.Q76H	1.000	45	0%	37	45.9%	24	16.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
ARMC4	55130	genome.wustl.edu	37	10	28233344	28233344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018076.2	-1	validated	p.I517T	1.000	118	0%	93	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,superfamily_ARM repeat
MPP7	143098	genome.wustl.edu	37	10	28348637	28348637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173496.3	-1	validated	p.G414C	1.000	175	0%	132	33.3%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_kin,HMMSmart_GuKc,PatternScan_GUANYLATE_KINASE_1,superfamily_SSF52540
MPP7	143098	genome.wustl.edu	37	10	28358700	28358700	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173496.3	-1	validated	e12+1	1.000	298	0.3%	208	24.5%	0	-	-	-	-	-
MPP7	143098	genome.wustl.edu	37	10	28413031	28413031	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173496.3	-1	validated	p.G182C	1.000	367	0.3%	279	22.2%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
WAC	51322	genome.wustl.edu	37	10	28884761	28884761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016628.3	+1	reviewed	p.A237V	1.000	459	0.2%	297	25.6%	104	48%	benign(0.006)	tolerated(0.2)	neutral(0.049)	NULL
MAP3K8	1326	genome.wustl.edu	37	10	30749709	30749709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005204.2	+1	reviewed	p.A450T	1.000	218	0%	119	63.9%	3	0%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	NULL
LOC645954	645954	genome.wustl.edu	37	10	30982437	30982437	+	RNA	SNP	C	C	A	rs12268518	byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017086.3	+1	model	NULL	0.080	30	0%	16	50%	0	-	-	-	-	-
ZEB1	6935	genome.wustl.edu	37	10	31815705	31815705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030751.5	+1	reviewed	p.D963G	1.000	183	0%	135	27.4%	5	0%	benign(0.39)	deleterious(0.01)	deleterious(0.530)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ARHGAP12	94134	genome.wustl.edu	37	10	32197260	32197260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018287.5	-1	provisional	p.R175H	0.259	714	0.1%	485	32.6%	13	84.6%	benign(0.001)	tolerated(0.1)	neutral(0.286)	NULL
KIF5B	3799	genome.wustl.edu	37	10	32320101	32320101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004521.2	-1	validated	p.A494D	1.000	129	0%	94	30.9%	72	55.5%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
EPC1	80314	genome.wustl.edu	37	10	32560545	32560545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025209.2	-1	provisional	p.A792V	1.000	283	0.4%	198	30.3%	57	33.3%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_E_Pc_C
ITGB1	3688	genome.wustl.edu	37	10	33201016	33201016	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033667.2	-1	reviewed	p.C502	0.983	322	0%	205	35.6%	344	33.4%	-	-	-	NULL
ITGB1	3688	genome.wustl.edu	37	10	33218856	33218856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033667.2	-1	reviewed	p.K90N	1.000	757	0%	512	25.2%	149	39.5%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Integrin_beta,HMMSmart_INB
PARD3	56288	genome.wustl.edu	37	10	34673178	34673178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.L299M	0.850	439	0%	231	30.3%	18	38.8%	possibly_damaging(0.946)	deleterious(0.03)	deleterious(0.754)	HMMSmart_SM00228,superfamily_PDZ domain-like
GJD4	219770	genome.wustl.edu	37	10	35896625	35896625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153368.2	+1	validated	p.A62T	0.990	134	0%	57	22.8%	0	-	benign(0.053)	tolerated(0.15)	neutral(0.244)	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1
NAMPTL	646309	genome.wustl.edu	37	10	36812568	36812568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.T199A	0.997	190	0%	90	23.3%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_NAPRTase
ANKRD30A	91074	genome.wustl.edu	37	10	37438608	37438608	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	e10+1	0.341	447	0%	309	24.6%	0	-	-	-	-	-
ANKRD30A	91074	genome.wustl.edu	37	10	37454056	37454056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.D623E	0.000	182	0%	115	20.9%	0	-	benign(0.355)	tolerated(0.21)	neutral(0.157)	NULL
ZNF248	57209	genome.wustl.edu	37	10	38120811	38120811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021045.1	-1	provisional	p.P491L	0.998	789	0.1%	524	28.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
ZNF33A	7581	genome.wustl.edu	37	10	38344993	38344993	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006954.1	+1	validated	p.C647	0.000	493	0%	354	28%	18	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000099251	0	genome.wustl.edu	37	10	38654376	38654376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356314	+1	known	p.E154D	0.996	213	0%	154	9.7%	7	14.2%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
LOC642424	642424	genome.wustl.edu	37	10	42680802	42680802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717196.2	+1	model	p.V131M	0.989	493	0.2%	380	8.2%	0	-	-	-	-	NULL
ZNF33B	7582	genome.wustl.edu	37	10	43127851	43127851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006955.1	-1	provisional	p.D16Y	0.990	235	0%	148	27.7%	6	16.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
LOC728064	728064	genome.wustl.edu	37	10	43197474	43197474	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_015196.2	-1	model	NULL	0.003	180	0%	145	36.6%	0	-	-	-	-	-
BMS1	9790	genome.wustl.edu	37	10	43282624	43282624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.R126C	1.000	284	0%	172	18.6%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43288480	43288480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.R326H	1.000	565	0%	340	36.8%	33	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43292931	43292931	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.Q683	0.899	638	0%	426	19.7%	30	30%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
BMS1	9790	genome.wustl.edu	37	10	43319220	43319220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.D1148E	1.000	273	0%	174	28.7%	51	43.1%	possibly_damaging(0.454)	deleterious(0)	deleterious(0.593)	NULL
BMS1	9790	genome.wustl.edu	37	10	43325745	43325745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014753.3	+1	reviewed	p.H1165Y	1.000	214	0%	105	21.9%	44	45.4%	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	NULL
CSGALNACT2	55454	genome.wustl.edu	37	10	43650850	43650850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018590.3	+1	provisional	p.E85K	1.000	194	0%	105	32.4%	6	33.3%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_CHGN
ZNF32	7580	genome.wustl.edu	37	10	44139579	44139579	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005368.1	-1	validated	p.C247	0.578	127	0%	71	29.6%	55	40%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
TMEM72	643236	genome.wustl.edu	37	10	45423427	45423427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123376.1	+1	provisional	p.F43L	1.000	193	0%	111	20.7%	0	-	possibly_damaging(0.797)	tolerated(0.88)	neutral(0.299)	NULL
MARCH8	220972	genome.wustl.edu	37	10	45953942	45953942	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453424	-1	known	p.L372F	1.000	312	0%	191	34%	9	55.5%	-	-	-	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46111927	46111927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128324.1	-1	validated	p.E714V	1.000	320	0%	193	31.6%	3	0%	benign(0.023)	tolerated(0.14)	neutral(0.251)	NULL
FAM21C	253725	genome.wustl.edu	37	10	46265051	46265051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015262.2	+1	validated	p.A673V	0.998	757	0%	425	30.1%	13	69.2%	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	NULL
SYT15	83849	genome.wustl.edu	37	10	46962005	46962005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031912.3	-1	reviewed	p.R411C	1.000	62	0%	30	20%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PPYR1	5540	genome.wustl.edu	37	10	47087704	47087704	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005972.4	+1	validated	p.C307	1.000	226	0%	74	18.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM21B	55747	genome.wustl.edu	37	10	47945431	47945431	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018232.1	+1	validated	p.P977	0.000	103	0%	39	46.2%	10	50%	-	-	-	NULL
GDF2	2658	genome.wustl.edu	37	10	48414453	48414453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016204.1	-1	reviewed	p.I139V	1.000	50	0%	27	25.9%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_TGFb_propeptide
GDF10	2662	genome.wustl.edu	37	10	48428942	48428942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004962.2	-1	reviewed	p.A315V	0.000	25	0%	11	54.5%	1	0%	benign(0.013)	tolerated(0.18)	neutral(0.057)	NULL
MAPK8	5599	genome.wustl.edu	37	10	49612895	49612895	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139047.1	+1	reviewed	p.C41	1.000	265	0%	151	37.1%	14	64.2%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP22	58504	genome.wustl.edu	37	10	49667784	49667784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021226.2	-1	validated	p.N201S	1.000	104	0%	49	40.8%	0	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
C10orf71	118461	genome.wustl.edu	37	10	50532472	50532472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.A628T	0.000	129	0%	72	25%	0	-	benign(0)	tolerated(1)	-	NULL
C10orf71	118461	genome.wustl.edu	37	10	50532819	50532819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135196.1	+1	validated	p.Q743	0.998	61	0%	30	30%	0	-	-	-	-	NULL
OGDHL	55753	genome.wustl.edu	37	10	50946020	50946020	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.R830	1.000	137	0%	81	29.6%	7	14.2%	-	-	-	HMMPfam_Transket_pyr,superfamily_SSF52518
FAM21A	387680	genome.wustl.edu	37	10	51887353	51887353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005751.1	+1	validated	p.A962V	0.936	564	0.2%	273	21.2%	17	23.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
A1CF	29974	genome.wustl.edu	37	10	52595903	52595903	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138932.1	-1	reviewed	p.R179*	1.000	663	0%	579	29%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CSTF2T	23283	genome.wustl.edu	37	10	53457765	53457765	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015235.2	-1	validated	p.G515	0.242	118	0%	76	14.5%	26	26.9%	-	-	-	NULL
PRKG1	5592	genome.wustl.edu	37	10	53921652	53921652	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006258.2	+1	validated	p.S335	1.000	125	0%	79	31.6%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
PCDH15	65217	genome.wustl.edu	37	10	55568902	55568902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142769.1	-1	reviewed	p.E1641D	0.924	172	0%	112	32.1%	0	-	unknown(0)	deleterious(0)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55571352	55571352	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142770.1	-1	reviewed	p.I1467	1.000	51	0%	43	37.2%	0	-	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55581830	55581830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.V1893I	0.713	283	0%	146	28.1%	0	-	unknown(0)	tolerated(0.51)	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55755470	55755470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.A941V	1.000	135	0%	82	28%	0	-	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Cadherin,superfamily_Cadherin-like
CISD1	55847	genome.wustl.edu	37	10	60037051	60037051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018464.3	+1	validated	p.A69V	1.000	218	0%	135	11.1%	122	18.8%	possibly_damaging(0.898)	tolerated(0.13)	deleterious(0.607)	HMMSmart_ZnF_CDGSH,HMMPfam_zf-CDGSH
ANK3	288	genome.wustl.edu	37	10	61828854	61828854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.A3929T	0.636	597	0%	449	29.2%	0	-	benign(0)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61831479	61831479	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.F3054V	0.637	383	0%	291	26.8%	0	-	benign(0.106)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833169	61833169	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.P2490	1.000	356	0.3%	251	11.2%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61833643	61833643	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.V2332	1.000	360	0%	268	24.6%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61898785	61898785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.L892S	1.000	473	0%	328	26.8%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RHOBTB1	9886	genome.wustl.edu	37	10	62647997	62647997	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014836.4	-1	reviewed	p.E477*	1.000	175	0%	123	24.4%	7	14.2%	-	-	-	superfamily_BTB/POZ_fold,HMMPfam_BTB
EGR2	1959	genome.wustl.edu	37	10	64573706	64573706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000399.3	-1	reviewed	p.P231L	1.000	127	0%	64	35.9%	2	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64960308	64960308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.R1735I	1.000	88	0%	64	43.8%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64973422	64973422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.Q835H	1.000	140	0%	83	33.7%	17	52.9%	probably_damaging(0.981)	tolerated(0.35)	neutral(0.446)	NULL
LRRTM3	347731	genome.wustl.edu	37	10	68687037	68687037	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178011.3	+1	validated	p.I121	1.000	560	0%	294	22.8%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
LRRTM3	347731	genome.wustl.edu	37	10	68687483	68687483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178011.3	+1	validated	p.G270E	1.000	423	0%	243	10.7%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
MYPN	84665	genome.wustl.edu	37	10	69925487	69925487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.E504D	0.979	367	0%	207	32.4%	0	-	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYPN	84665	genome.wustl.edu	37	10	69926245	69926245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.H599Y	1.000	195	0%	126	31.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DNA2	1763	genome.wustl.edu	37	10	70182097	70182097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080449.1	-1	provisional	p.R947H	0.992	135	0%	103	31.1%	5	40%	benign(0.062)	tolerated(0.08)	neutral(0.304)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TET1	80312	genome.wustl.edu	37	10	70333198	70333198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.A368D	0.766	417	0%	308	22.7%	0	-	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
TET1	80312	genome.wustl.edu	37	10	70406317	70406317	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.F1277	0.000	258	0%	155	26.5%	1	0%	-	-	-	NULL
CCAR1	55749	genome.wustl.edu	37	10	70507310	70507310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018237.2	+1	validated	p.Q271H	0.982	297	0%	205	29.3%	43	48.8%	unknown(0)	tolerated(0.34)	-	NULL
STOX1	219736	genome.wustl.edu	37	10	70645039	70645039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130161.2	+1	reviewed	p.P496H	1.000	222	0%	120	30.8%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX50	79009	genome.wustl.edu	37	10	70696828	70696828	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024045.1	+1	reviewed	p.R578*	1.000	330	0%	249	22.5%	38	10.5%	-	-	-	HMMPfam_GUCT
DDX21	9188	genome.wustl.edu	37	10	70733353	70733353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004728.2	+1	reviewed	p.T534M	1.000	137	0%	91	34.1%	68	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX21	9188	genome.wustl.edu	37	10	70734428	70734428	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004728.2	+1	reviewed	p.G557	0.974	166	0%	110	27.3%	63	39.6%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SUPV3L1	6832	genome.wustl.edu	37	10	70945771	70945771	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003171.3	+1	provisional	p.F100L	1.000	417	0%	273	34.1%	25	44%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
HK1	3098	genome.wustl.edu	37	10	71119686	71119686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033497.2	+1	reviewed	p.G91E	1.000	205	0%	94	16%	34	20.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hexokinase_1,superfamily_SSF53067
HK1	3098	genome.wustl.edu	37	10	71139806	71139806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033497.2	+1	reviewed	p.R411Q	1.000	85	0%	44	22.7%	63	36.5%	probably_damaging(0.998)	tolerated(0.29)	deleterious(0.503)	HMMPfam_Hexokinase_2,superfamily_SSF53067
PPA1	5464	genome.wustl.edu	37	10	71969414	71969414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021129.3	-1	reviewed	p.P180H	1.000	282	0.4%	187	14.4%	415	16.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase
NPFFR1	64106	genome.wustl.edu	37	10	72025953	72025953	+	Missense_Mutation	SNP	C	C	T	rs188869837	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000277942	-1	known	p.V68M	0.998	252	0.4%	144	29.2%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C10orf27	219793	genome.wustl.edu	37	10	72536938	72536938	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152710.2	-1	validated	p.A221T	0.000	83	0%	40	32.5%	0	-	benign(0.001)	tolerated(1)	-	NULL
UNC5B	219699	genome.wustl.edu	37	10	73044511	73044511	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170744.3	+1	validated	p.S113	0.010	60	0%	25	28%	24	8.3%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ASCC1	51008	genome.wustl.edu	37	10	73956576	73956576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015947.2	-1	validated	p.C161Y	1.000	12	0%	11	36.4%	29	55.1%	possibly_damaging(0.599)	tolerated(0.48)	neutral(0.218)	NULL
MCU	90550	genome.wustl.edu	37	10	74631333	74631333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138357.1	+1	provisional	p.R286C	1.000	380	0.3%	212	30.2%	19	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF607
TTC18	118491	genome.wustl.edu	37	10	75034274	75034274	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.R988*	1.000	226	0%	143	31.5%	2	0%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TTC18	118491	genome.wustl.edu	37	10	75037005	75037005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.A908D	1.000	156	0%	104	29.8%	2	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_TPR-like
TTC18	118491	genome.wustl.edu	37	10	75113322	75113322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.P81H	1.000	261	0%	150	31.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ANXA7	310	genome.wustl.edu	37	10	75156962	75156962	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004034.2	-1	reviewed	p.S110	0.922	118	0%	79	26.6%	111	47.7%	-	-	-	NULL
MSS51	118490	genome.wustl.edu	37	10	75187869	75187869	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024593.1	-1	validated	p.S58	1.000	180	0%	96	28.1%	0	-	-	-	-	NULL
USP54	159195	genome.wustl.edu	37	10	75258785	75258785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.G1553W	0.895	995	0%	596	31%	42	47.6%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
USP54	159195	genome.wustl.edu	37	10	75260421	75260421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.R1496I	0.998	237	0%	130	10%	49	10.2%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75406744	75406744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.R889Q	1.000	82	0%	42	38.1%	0	-	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75408191	75408191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.R407W	0.000	72	0%	33	15.2%	0	-	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	NULL
AGAP5	729092	genome.wustl.edu	37	10	75435506	75435506	+	Silent	SNP	G	G	A	rs28572353		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144000.1	-1	validated	p.Y304	1.000	577	0%	343	14.3%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
AGAP5	729092	genome.wustl.edu	37	10	75435558	75435558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144000.1	-1	validated	p.G287D	1.000	533	0%	308	10.4%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SEC24C	9632	genome.wustl.edu	37	10	75526138	75526138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411652	+1	known	p.A244V	0.001	154	0%	85	28.2%	58	44.8%	unknown(0)	-	-	NULL
SEC24C	9632	genome.wustl.edu	37	10	75529384	75529384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004922.2	+1	reviewed	p.V859I	0.998	282	0%	135	32.6%	111	52.2%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24
KIAA0913	23053	genome.wustl.edu	37	10	75548884	75548884	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446546	+1	known	p.R216Q	0.898	79	0%	29	34.5%	10	30%	-	-	-	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75553750	75553750	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433366	+1	known	p.W573*	1.000	64	0%	26	38.5%	24	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA0913	23053	genome.wustl.edu	37	10	75558191	75558191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015037.2	+1	validated	p.L1386M	0.833	54	0%	27	18.5%	40	27.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
NDST2	8509	genome.wustl.edu	37	10	75565422	75565422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003635.3	-1	reviewed	p.L557I	1.000	102	0%	29	17.2%	12	58.3%	possibly_damaging(0.927)	tolerated(0.09)	deleterious(0.671)	NULL
NDST2	8509	genome.wustl.edu	37	10	75567702	75567702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003635.3	-1	reviewed	p.L149M	1.000	199	0%	114	28.9%	10	70%	benign(0.045)	tolerated(0.93)	neutral(0.003)	NULL
CAMK2G	818	genome.wustl.edu	37	10	75607083	75607083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172171.1	-1	reviewed	p.T240M	1.000	81	0%	48	33.3%	12	50%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
VCL	7414	genome.wustl.edu	37	10	75868839	75868839	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014000.2	+1	reviewed	p.A890	0.012	128	0%	79	34.2%	41	19.5%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
ADK	132	genome.wustl.edu	37	10	76349069	76349069	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006721.2	+1	reviewed	p.G252	1.000	252	0%	230	27.4%	55	32.7%	-	-	-	HMMPfam_PfkB,superfamily_Ribokinase-like
KAT6B	23522	genome.wustl.edu	37	10	76603125	76603125	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.P170	0.176	184	0%	96	12.5%	13	15.3%	-	-	-	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain"
KAT6B	23522	genome.wustl.edu	37	10	76780932	76780932	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.K970	0.998	263	0%	145	29%	7	57.1%	-	-	-	superfamily_Acyl-CoA N-acyltransferases (Nat)
KAT6B	23522	genome.wustl.edu	37	10	76788926	76788926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.S1448R	0.003	350	0.3%	201	26.9%	4	25%	benign(0.002)	tolerated(0.06)	neutral(0.323)	NULL
KAT6B	23522	genome.wustl.edu	37	10	76790418	76790418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.R1946C	1.000	522	0.2%	260	11.9%	19	10.5%	possibly_damaging(0.802)	-	-	NULL
SAMD8	142891	genome.wustl.edu	37	10	76910318	76910318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144660.2	+1	validated	p.R11H	1.000	194	0%	105	17.1%	5	40%	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
C10orf11	83938	genome.wustl.edu	37	10	77542759	77542759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032024.3	+1	provisional	p.G9V	1.000	102	0%	54	27.8%	0	-	benign(0.013)	tolerated(0.15)	neutral(0.241)	superfamily_Outer arm dynein light chain 1
KCNMA1	3778	genome.wustl.edu	37	10	78708934	78708934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014797.2	-1	reviewed	p.T838M	1.000	858	0%	480	28.5%	13	69.2%	possibly_damaging(0.908)	tolerated(0.13)	deleterious(0.614)	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78729731	78729731	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014797.2	-1	reviewed	e20+1	1.000	173	0%	109	30.3%	0	-	-	-	-	-
DLG5	9231	genome.wustl.edu	37	10	79565530	79565530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004747.3	-1	reviewed	p.R1686Q	1.000	119	0%	66	43.9%	24	45.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SH3-domain
PPIF	10105	genome.wustl.edu	37	10	81112119	81112119	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448165	+1	known	p.S117N	1.000	73	0%	30	30%	142	50.7%	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
FAM22B	729262	genome.wustl.edu	37	10	81472117	81472117	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429828	+1	known	p.P838H	0.002	90	0%	61	18%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SFTPD	6441	genome.wustl.edu	37	10	81697824	81697824	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003019.4	-1	validated	p.V304	0.000	240	0%	147	37.4%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LOC642538	642538	genome.wustl.edu	37	10	81792022	81792022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_926027.4	-1	model	p.L44S	0.869	116	0%	68	19.1%	0	-	-	-	-	HMMPfam_Sas10_Utp3
SH2D4B	387694	genome.wustl.edu	37	10	82331301	82331301	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207372.2	+1	validated	p.K154	0.870	180	0%	110	15.5%	0	-	-	-	-	NULL
NRG3	10718	genome.wustl.edu	37	10	84118498	84118498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010848.3	+1	reviewed	p.T276M	0.998	214	0%	139	25.9%	0	-	-	-	-	NULL
GHITM	27069	genome.wustl.edu	37	10	85901354	85901354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014394.2	+1	validated	p.T33M	0.016	210	0%	133	30.8%	249	39.3%	possibly_damaging(0.937)	tolerated(0.18)	neutral(0.439)	NULL
C10orf99	387695	genome.wustl.edu	37	10	85936244	85936244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207373.2	+1	validated	p.R27C	0.001	93	0%	40	27.5%	2	0%	possibly_damaging(0.933)	-	-	NULL
GRID1	2894	genome.wustl.edu	37	10	87379674	87379674	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327946	-1	known	p.T553M	0.979	73	0%	46	15.2%	0	-	-	-	-	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRID1	2894	genome.wustl.edu	37	10	87615811	87615811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017551.2	-1	reviewed	p.R363M	1.000	116	0%	74	20.3%	0	-	benign(0.372)	tolerated(0.22)	neutral(0.161)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
WAPAL	23063	genome.wustl.edu	37	10	88213443	88213443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015045.2	-1	validated	p.G935R	1.000	314	0%	165	13.3%	37	24.3%	probably_damaging(1)	tolerated(0.65)	deleterious(0.503)	HMMPfam_WAPL,superfamily_ARM repeat
WAPAL	23063	genome.wustl.edu	37	10	88227231	88227231	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015045.2	-1	validated	p.Y725	1.000	120	0%	54	42.6%	37	45.9%	-	-	-	HMMPfam_WAPL,superfamily_ARM repeat
LDB3	11155	genome.wustl.edu	37	10	88441200	88441200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007078.2	+1	reviewed	p.A110V	0.981	56	0%	25	20%	0	-	possibly_damaging(0.643)	tolerated(1)	neutral(0.226)	NULL
LDB3	11155	genome.wustl.edu	37	10	88476225	88476225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007078.2	+1	reviewed	p.A458V	1.000	33	0%	16	31.2%	0	-	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	NULL
AGAP11	119385	genome.wustl.edu	37	10	88769638	88769638	+	Silent	SNP	C	C	T	rs74757729		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133447.1	+1	validated	p.Y543	1.000	175	0%	104	26.9%	2	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
GLUD1	2746	genome.wustl.edu	37	10	88817490	88817490	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005271.3	-1	reviewed	p.T484	0.987	324	0%	159	24.5%	78	46.1%	-	-	-	superfamily_NAD(P)-bd
PAPSS2	9060	genome.wustl.edu	37	10	89472856	89472856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015880.1	+1	reviewed	p.T57M	1.000	366	0%	235	24.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APS_kinase,superfamily_SSF52540
PAPSS2	9060	genome.wustl.edu	37	10	89473939	89473939	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015880.1	+1	reviewed	p.G174*	1.000	305	0%	217	32.7%	1	0%	-	-	-	HMMPfam_APS_kinase,superfamily_SSF52540
PTEN	5728	genome.wustl.edu	37	10	89711927	89711928	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.N184fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
RNLS	55328	genome.wustl.edu	37	10	90332760	90332760	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031709.2	-1	validated	p.W142*	1.000	501	0.2%	367	27.8%	1	0%	-	-	-	superfamily_FAD/NAD(P)-binding domain
LIPJ	142910	genome.wustl.edu	37	10	90354535	90354535	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010939.2	+1	validated	e4+2	1.000	158	0%	99	13.1%	0	-	-	-	-	-
FAS	355	genome.wustl.edu	37	10	90773101	90773101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000043.3	+1	reviewed	p.E218G	0.621	168	0%	113	30.1%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00005,superfamily_DEATH domain
FAS	355	genome.wustl.edu	37	10	90774068	90774068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000043.3	+1	reviewed	p.A290V	0.026	288	0%	161	26.1%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
LIPA	3988	genome.wustl.edu	37	10	90983549	90983549	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000235.2	-1	reviewed	p.A238	0.000	456	0%	271	25.1%	47	34%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
IFIT1B	439996	genome.wustl.edu	37	10	91143946	91143946	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010987.2	+1	validated	p.G292	0.985	492	0%	282	25.5%	0	-	-	-	-	superfamily_TPR-like
IFIT1	3434	genome.wustl.edu	37	10	91163174	91163174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001548.3	+1	validated	p.H381R	0.603	266	0.8%	173	30.6%	5	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_TPR-like
IFIT5	24138	genome.wustl.edu	37	10	91178165	91178165	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012420.2	+1	validated	p.A403	0.563	253	0%	118	22%	11	27.2%	-	-	-	superfamily_SSF48452
KIF20B	9585	genome.wustl.edu	37	10	91469691	91469691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.G120D	1.000	138	0.7%	86	31.4%	1	100%	benign(0.193)	tolerated(0.1)	neutral(0.304)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91476235	91476235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.R328I	0.997	66	0%	52	15.4%	4	25%	possibly_damaging(0.586)	deleterious(0.02)	deleterious(0.585)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91497469	91497469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.Q917H	0.968	231	0%	181	27.1%	5	60%	benign(0.061)	deleterious(0.05)	neutral(0.349)	NULL
LOC119358	119358	genome.wustl.edu	37	10	91738714	91738714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_061427.3	+1	model	p.G81S	1.000	124	0%	69	27.5%	0	-	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
HTR7	3363	genome.wustl.edu	37	10	92508891	92508891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019859.3	-1	reviewed	p.G334R	1.000	113	0%	76	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ANKRD1	27063	genome.wustl.edu	37	10	92675981	92675981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014391.2	-1	reviewed	p.D200Y	1.000	151	0%	81	33.3%	1	0%	benign(0.013)	deleterious(0.01)	neutral(0.406)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BTAF1	9044	genome.wustl.edu	37	10	93717041	93717041	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.P297	0.031	333	0%	227	24.7%	7	14.2%	-	-	-	superfamily_ARM repeat
BTAF1	9044	genome.wustl.edu	37	10	93718911	93718911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.E330D	1.000	382	0%	214	11.7%	3	66.6%	benign(0.284)	deleterious(0.04)	neutral(0.436)	superfamily_ARM repeat
BTAF1	9044	genome.wustl.edu	37	10	93740291	93740291	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.Q577H	1.000	214	0%	114	21.1%	3	66.6%	benign(0.018)	deleterious(0.02)	neutral(0.384)	superfamily_ARM repeat
MARCH5	54708	genome.wustl.edu	37	10	94109126	94109126	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017824.4	+1	validated	p.G130	0.999	313	0%	193	28.5%	79	37.9%	-	-	-	NULL
EXOC6	54536	genome.wustl.edu	37	10	94654777	94654777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019053.4	+1	reviewed	p.V138L	1.000	555	0%	490	26.7%	10	10%	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	NULL
CYP26C1	340665	genome.wustl.edu	37	10	94822661	94822661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183374.2	+1	reviewed	p.A205V	0.800	20	0.000	6	0.667	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	superfamily_Cytochrome_P450
MYOF	26509	genome.wustl.edu	37	10	95070324	95070324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.E1989G	1.000	185	0%	84	22.6%	30	23.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYOF	26509	genome.wustl.edu	37	10	95134596	95134596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.S742L	1.000	76	0%	63	38.1%	6	0%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
PLCE1	51196	genome.wustl.edu	37	10	95987084	95987084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.L611M	1.000	215	0%	135	25.2%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
TBC1D12	23232	genome.wustl.edu	37	10	96269916	96269916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015188.1	+1	validated	p.S557P	1.000	147	0%	82	26.8%	8	12.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
TBC1D12	23232	genome.wustl.edu	37	10	96281836	96281836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015188.1	+1	validated	p.S629I	0.997	257	0%	154	29.9%	8	50%	possibly_damaging(0.449)	deleterious(0.05)	deleterious(0.492)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
HELLS	3070	genome.wustl.edu	37	10	96352271	96352271	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018063.3	+1	reviewed	p.N657	1.000	216	0%	167	16.2%	9	33.3%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
HELLS	3070	genome.wustl.edu	37	10	96354509	96354509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018063.3	+1	reviewed	p.P716S	1.000	273	0%	170	15.9%	7	0%	possibly_damaging(0.533)	deleterious(0)	deleterious(0.625)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PDLIM1	9124	genome.wustl.edu	37	10	97007015	97007015	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020992.2	-1	provisional	p.T214	0.568	439	0%	243	26.7%	104	24%	-	-	-	NULL
PDLIM1	9124	genome.wustl.edu	37	10	97028572	97028572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020992.2	-1	provisional	p.R99H	0.998	233	0.4%	106	24.5%	125	31.2%	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	superfamily_PDZ
SORBS1	10580	genome.wustl.edu	37	10	97082509	97082509	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034956.1	-1	validated	p.S824R	1.000	254	0%	175	26.3%	0	-	benign(0.156)	deleterious(0.01)	neutral(0.420)	superfamily_SH3
SORBS1	10580	genome.wustl.edu	37	10	97143856	97143856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034954.1	-1	validated	p.S475Y	1.000	392	0%	255	27.1%	4	0%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TCTN3	26123	genome.wustl.edu	37	10	97423950	97423950	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015631.5	-1	validated	p.W566*	0.987	495	0%	277	22.4%	125	40%	-	-	-	NULL
TCTN3	26123	genome.wustl.edu	37	10	97444270	97444270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015631.5	-1	validated	p.I361V	0.937	168	0%	115	20%	104	27.8%	benign(0.025)	tolerated(0.29)	neutral(0.030)	HMMPfam_DUF1619
ZNF518A	9849	genome.wustl.edu	37	10	97917460	97917460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371192	+1	known	p.V461M	1.000	355	0%	261	28%	18	50%	-	-	-	NULL
TLL2	7093	genome.wustl.edu	37	10	98155110	98155110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012465.3	-1	validated	p.D520	1.000	263	0%	125	23.2%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
PIK3AP1	118788	genome.wustl.edu	37	10	98469354	98469354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152309.2	-1	validated	p.V134M	0.963	205	0%	120	27.5%	3	33.3%	possibly_damaging(0.491)	deleterious(0.01)	deleterious(0.569)	NULL
C10orf12	26148	genome.wustl.edu	37	10	98742653	98742653	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015652.2	+1	predicted	p.A502	1.000	272	0%	182	35.7%	4	75%	-	-	-	NULL
ARHGAP19	84986	genome.wustl.edu	37	10	99006037	99006037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032900.4	-1	validated	p.A329T	0.922	82	0%	43	18.6%	4	0%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
PGAM1	5223	genome.wustl.edu	37	10	99190264	99190264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002629.2	+1	provisional	p.R90W	1.000	664	0.2%	338	23.1%	100	54%	benign(0.351)	deleterious(0)	deleterious(0.555)	HMMPfam_PGAM,superfamily_Phosphoglycerate mutase-like
MMS19	64210	genome.wustl.edu	37	10	99236602	99236602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022362.4	-1	validated	p.D204E	1.000	230	0%	121	26.4%	13	38.4%	benign(0.003)	tolerated(0.26)	neutral(0.034)	superfamily_ARM repeat
UBTD1	80019	genome.wustl.edu	37	10	99329931	99329931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024954.3	+1	provisional	p.R112H	1.000	99	0%	61	39.3%	11	9%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	NULL
HOGA1	112817	genome.wustl.edu	37	10	99358936	99358936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138413.3	+1	validated	p.R144H	1.000	104	1%	58	41.4%	0	-	possibly_damaging(0.852)	tolerated(0.1)	deleterious(0.614)	HMMPfam_DHDPS,superfamily_Aldolase
ZFYVE27	118813	genome.wustl.edu	37	10	99509312	99509312	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002261.3	+1	reviewed	p.T211	0.950	125	0%	55	25.5%	11	27.2%	-	-	-	NULL
ZFYVE27	118813	genome.wustl.edu	37	10	99510206	99510206	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002261.3	+1	reviewed	p.T261	0.082	82	0%	53	15.1%	15	13.3%	-	-	-	NULL
LOXL4	84171	genome.wustl.edu	37	10	100012165	100012165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032211.6	-1	reviewed	p.K632N	1.000	126	0%	74	24.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lysyl_oxidase
HPS1	3257	genome.wustl.edu	37	10	100190991	100190991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000195.2	-1	reviewed	p.R189W	1.000	18	0%	14	28.6%	30	10%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
HPSE2	60495	genome.wustl.edu	37	10	100481527	100481527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021828.4	-1	reviewed	p.K281N	1.000	290	0%	279	14%	0	-	possibly_damaging(0.918)	deleterious(0.04)	deleterious(0.718)	HMMPfam_Glyco_hydro_79n
HPSE2	60495	genome.wustl.edu	37	10	100503680	100503680	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021828.4	-1	reviewed	p.S248	0.697	334	0%	204	33.3%	1	0%	-	-	-	HMMPfam_Glyco_hydro_79n
CNNM1	26507	genome.wustl.edu	37	10	101122004	101122004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020348.2	+1	validated	p.L627M	0.864	205	0%	132	29.5%	0	-	possibly_damaging(0.845)	tolerated(0.1)	deleterious(0.611)	NULL
COX15	1355	genome.wustl.edu	37	10	101489466	101489466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078470.4	-1	reviewed	p.R39M	0.926	200	0%	133	12%	16	6.2%	possibly_damaging(0.852)	deleterious(0.03)	deleterious(0.692)	superfamily_Trypsin-like serine proteases
DNMBP	23268	genome.wustl.edu	37	10	101646087	101646087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.Q1196H	0.540	319	0.3%	147	31.3%	10	50%	benign(0.296)	tolerated(0.13)	neutral(0.344)	HMMPfam_BAR,HMMSmart_SM00721
DNMBP	23268	genome.wustl.edu	37	10	101654729	101654729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.L1044M	1.000	189	0%	73	13.7%	10	10%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_BAR,HMMSmart_SM00721
DNMBP	23268	genome.wustl.edu	37	10	101715524	101715524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015221.2	-1	validated	p.E569D	0.011	261	0%	166	15.1%	2	50%	benign(0.059)	tolerated(0.14)	neutral(0.254)	NULL
CHUK	1147	genome.wustl.edu	37	10	101978505	101978505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001278.3	-1	reviewed	p.S256I	1.000	325	0%	192	27.1%	18	50%	possibly_damaging(0.768)	deleterious(0.01)	deleterious(0.691)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SCD	6319	genome.wustl.edu	37	10	102120592	102120592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005063.4	+1	validated	p.A328T	1.000	219	0.5%	123	27.6%	120	45.8%	possibly_damaging(0.89)	deleterious(0.01)	deleterious(0.756)	NULL
SEC31B	25956	genome.wustl.edu	37	10	102248661	102248661	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.S1081T	0.986	104	0%	83	25.3%	7	42.8%	benign(0.021)	tolerated(1)	neutral(0.001)	NULL
FAM178A	55719	genome.wustl.edu	37	10	102676647	102676647	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136123.1	+1	validated	p.R169*	0.147	199	0%	106	22.6%	3	100%	-	-	-	NULL
FAM178A	55719	genome.wustl.edu	37	10	102697174	102697174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136123.1	+1	validated	p.T818A	1.000	324	0%	200	13.5%	4	25%	benign(0.273)	tolerated(0.23)	neutral(0.071)	NULL
FAM178A	55719	genome.wustl.edu	37	10	102707529	102707529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136123.1	+1	validated	p.Q1015H	1.000	140	0%	97	34%	15	73.3%	possibly_damaging(0.519)	deleterious(0.02)	deleterious(0.557)	NULL
C10orf2	56652	genome.wustl.edu	37	10	102747992	102747992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021830.4	+1	reviewed	p.Y9H	0.377	75	0%	45	35.6%	8	62.5%	benign(0.024)	deleterious(0.03)	neutral(0.365)	NULL
BTRC	8945	genome.wustl.edu	37	10	103239193	103239193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.K101N	1.000	160	0%	88	25%	8	25%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
POLL	27343	genome.wustl.edu	37	10	103339395	103339395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013274.3	-1	reviewed	p.S515T	1.000	44	0%	16	56.2%	33	30.3%	benign(0.155)	deleterious(0.04)	neutral(0.362)	HMMSmart_POLXc,superfamily_SSF81301
DPCD	25911	genome.wustl.edu	37	10	103354446	103354446	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015448.1	+1	provisional	p.D32	0.998	173	0%	114	22.8%	37	45.9%	-	-	-	NULL
MGEA5	10724	genome.wustl.edu	37	10	103559017	103559017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012215.3	-1	validated	p.P464H	1.000	658	0.2%	346	26.6%	45	35.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C10orf76	79591	genome.wustl.edu	37	10	103772609	103772609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024541.2	-1	validated	p.A251S	1.000	116	0%	56	21.4%	7	42.8%	benign(0.003)	tolerated(1)	-	NULL
HPS6	79803	genome.wustl.edu	37	10	103827279	103827279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024747.4	+1	reviewed	p.R683L	0.007	105	0%	67	28.4%	31	32.2%	benign(0.039)	tolerated(0.08)	neutral(0.302)	NULL
HPS6	79803	genome.wustl.edu	37	10	103827420	103827420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024747.4	+1	reviewed	p.P730H	1.000	136	0%	65	27.7%	28	50%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
LDB1	8861	genome.wustl.edu	37	10	103868774	103868774	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419270	-1	known	p.S303	1.000	136	0%	78	30.8%	16	56.2%	-	-	-	HMMPfam_LIM_bind
LDB1	8861	genome.wustl.edu	37	10	103870825	103870825	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113407.1	-1	validated	e4+1	1.000	357	0%	167	31.7%	11	100%	-	-	-	-
NOLC1	9221	genome.wustl.edu	37	10	103917957	103917957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004741.3	+1	validated	p.A198V	0.350	348	0%	147	23.8%	82	52.4%	unknown(0)	tolerated(0.51)	-	NULL
NOLC1	9221	genome.wustl.edu	37	10	103922009	103922009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004741.3	+1	validated	p.K695E	1.000	453	0%	242	29.3%	119	45.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SRP40_C
PSD	5662	genome.wustl.edu	37	10	104163161	104163161	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.A957	0.089	87	0%	28	39.3%	8	0%	-	-	-	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104183215	104183215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024040.2	-1	validated	p.L278I	1.000	310	0.3%	178	28.1%	109	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM8	81603	genome.wustl.edu	37	10	104416612	104416612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030912.2	+1	validated	p.A386V	0.999	184	0%	80	27.5%	39	17.9%	benign(0.039)	deleterious(0.01)	neutral(0.408)	NULL
SFXN2	118980	genome.wustl.edu	37	10	104489557	104489557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178858.4	+1	validated	p.M195I	1.000	231	0%	122	30.3%	2	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_Mtc
CNNM2	54805	genome.wustl.edu	37	10	104679538	104679538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017649.3	+1	validated	p.I434T	1.000	90	0%	36	33.3%	8	37.5%	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	NULL
NT5C2	22978	genome.wustl.edu	37	10	104850451	104850451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134373.1	-1	validated	p.R456C	1.000	137	0%	72	22.2%	69	17.3%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_5_nucleotid
LOC729020	729020	genome.wustl.edu	37	10	105005762	105005762	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143909.1	+1	provisional	p.S3	0.378	62	0%	44	31.8%	1	0%	-	-	-	superfamily_RibP_bind_barrel
TAF5	6877	genome.wustl.edu	37	10	105147829	105147829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006951.3	+1	reviewed	p.D751A	1.000	356	0%	224	27.7%	8	25%	probably_damaging(0.979)	tolerated(0.1)	deleterious(0.708)	superfamily_WD40 repeat-like
TAF5	6877	genome.wustl.edu	37	10	105147964	105147964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006951.3	+1	reviewed	p.A796D	1.000	277	0%	165	30.9%	4	25%	benign(0.312)	tolerated(0.05)	neutral(0.443)	NULL
USMG5	84833	genome.wustl.edu	37	10	105152017	105152017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032747.2	-1	provisional	p.S37	0.995	174	0%	100	32%	211	42.1%	-	-	-	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105361619	105361619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.P1091L	1.000	191	0.5%	98	24.5%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
SH3PXD2A	9644	genome.wustl.edu	37	10	105561077	105561077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.T39I	1.000	157	0%	61	18%	0	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SLK	9748	genome.wustl.edu	37	10	105752848	105752848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.K157N	1.000	256	0%	157	24.2%	24	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLK	9748	genome.wustl.edu	37	10	105762822	105762822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.D629G	0.000	232	0%	142	30.3%	17	35.2%	benign(0.009)	tolerated(0.17)	neutral(0.059)	superfamily_Protein kinase-like (PK-like)
SLK	9748	genome.wustl.edu	37	10	105768002	105768002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.R891H	1.000	507	0.2%	327	29.7%	25	32%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Protein kinase-like (PK-like)
COL17A1	1308	genome.wustl.edu	37	10	105813677	105813677	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000494.3	-1	reviewed	e21+1	1.000	69	0%	23	21.7%	0	-	-	-	-	-
SFR1	119392	genome.wustl.edu	37	10	105883493	105883493	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002759.1	+1	validated	p.E53*	1.000	189	0%	115	26.1%	6	66.6%	-	-	-	HMMPfam_Mei5
ITPRIP	85450	genome.wustl.edu	37	10	106075368	106075368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033397.2	-1	provisional	p.R148C	0.982	96	0%	38	31.6%	4	0%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
SORCS3	22986	genome.wustl.edu	37	10	106737165	106737165	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014978.1	+1	reviewed	p.K290*	1.000	621	0%	420	29.8%	0	-	-	-	-	HMMSmart_VPS10,superfamily_SSF110296
SORCS3	22986	genome.wustl.edu	37	10	106865252	106865252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014978.1	+1	reviewed	p.Q397H	1.000	307	0.3%	224	23.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_VPS10,superfamily_SSF110296
ADD3	120	genome.wustl.edu	37	10	111878993	111878993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016824.3	+1	reviewed	p.L248I	1.000	336	0%	234	13.2%	32	15.6%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase
PDCD4	27250	genome.wustl.edu	37	10	112649383	112649383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014456.3	+1	reviewed	p.Q290H	1.000	312	0.3%	232	25.9%	103	40.7%	benign(0)	tolerated(1)	-	NULL
TECTB	6975	genome.wustl.edu	37	10	114061864	114061864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058222.1	+1	provisional	p.G305R	1.000	339	0%	172	26.7%	0	-	benign(0.027)	deleterious(0.03)	neutral(0.366)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115966023	115966023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.L440F	0.966	213	0%	152	27.6%	0	-	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	NULL
TDRD1	56165	genome.wustl.edu	37	10	115973246	115973246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.T658M	0.000	565	0%	446	26.5%	0	-	benign(0.017)	tolerated(0.11)	neutral(0.272)	NULL
VWA2	340706	genome.wustl.edu	37	10	116045832	116045832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198496.1	+1	provisional	p.S378A	1.000	82	0%	33	27.3%	19	15.7%	probably_damaging(0.975)	tolerated(0.08)	deleterious(0.717)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
AFAP1L2	84632	genome.wustl.edu	37	10	116070142	116070142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001936.1	-1	validated	p.P285T	0.945	74	0%	29	44.8%	1	0%	possibly_damaging(0.833)	tolerated(0.06)	deleterious(0.640)	NULL
TRUB1	142940	genome.wustl.edu	37	10	116734973	116734973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139169.4	+1	validated	p.W295*	1.000	609	0%	493	31.8%	20	45%	-	-	-	superfamily_PsdUridine_synth_cat_dom
ATRNL1	26033	genome.wustl.edu	37	10	117027914	117027914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.C698Y	1.000	154	0%	127	29.9%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PSI,HMMSmart_SM00423
ATRNL1	26033	genome.wustl.edu	37	10	117061443	117061443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.G903D	1.000	279	0%	162	27.2%	0	-	benign(0.358)	tolerated(0.07)	neutral(0.432)	HMMPfam_PSI,HMMSmart_SM00423
ATRNL1	26033	genome.wustl.edu	37	10	117309012	117309012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.I1254T	1.000	202	0%	125	16.8%	0	-	possibly_damaging(0.521)	deleterious(0)	deleterious(0.620)	NULL
C10orf96	374355	genome.wustl.edu	37	10	118084837	118084837	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198515.2	+1	validated	p.C34	0.996	96	0%	61	9.8%	0	-	-	-	-	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118220683	118220683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011709.2	+1	validated	p.V230A	0.000	219	0.5%	124	33.9%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP3	119548	genome.wustl.edu	37	10	118220790	118220790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011709.2	+1	validated	p.A266T	0.000	145	0%	105	27.6%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIP	5406	genome.wustl.edu	37	10	118306831	118306831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000936.2	+1	reviewed	p.L24	0.334	298	0%	166	25.9%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP1	5407	genome.wustl.edu	37	10	118357640	118357640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006229.2	+1	provisional	p.A259V	0.153	55	0%	36	16.7%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
PNLIPRP1	5407	genome.wustl.edu	37	10	118368618	118368618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006229.2	+1	provisional	p.T465M	0.000	76	0%	37	29.7%	0	-	possibly_damaging(0.638)	tolerated(0.24)	neutral(0.261)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
PNLIPRP2	5408	genome.wustl.edu	37	10	118389518	118389518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005396.4	+1	validated	p.T215M	1.000	52	0%	25	16%	2	0%	unknown(0)	-	-	NULL
HSPA12A	259217	genome.wustl.edu	37	10	118458231	118458231	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025015.2	-1	validated	p.D154A	1.000	146	0%	70	30%	1	0%	benign(0.08)	tolerated(0.52)	neutral(0.014)	superfamily_SSF53067
KIAA1598	57698	genome.wustl.edu	37	10	118728190	118728190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127211.1	-1	validated	p.V49I	1.000	110	0%	52	40.4%	14	64.2%	possibly_damaging(0.585)	tolerated(0.19)	neutral(0.251)	NULL
KIAA1598	57698	genome.wustl.edu	37	10	118728192	118728192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127211.1	-1	validated	p.A48V	1.000	110	0%	53	18.9%	14	28.5%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
C10orf46	143384	genome.wustl.edu	37	10	120489889	120489889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153810.4	-1	validated	p.S134I	1.000	236	0%	118	30.5%	12	41.6%	benign(0.039)	tolerated(0.05)	neutral(0.347)	superfamily_Cullin repeat
TIAL1	7073	genome.wustl.edu	37	10	121337167	121337167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.A230V	0.998	332	0%	215	12.1%	67	31.3%	benign(0.006)	tolerated(0.23)	neutral(0.042)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TIAL1	7073	genome.wustl.edu	37	10	121337192	121337192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.C222fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54928
TIAL1	7073	genome.wustl.edu	37	10	121339472	121339472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.G158V	1.000	175	0%	143	31.5%	52	75%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TIAL1	7073	genome.wustl.edu	37	10	121347682	121347682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.S37R	1.000	154	0%	98	28.6%	28	96.4%	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
INPP5F	22876	genome.wustl.edu	37	10	121571301	121571301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014937.2	+1	reviewed	p.L574F	1.000	222	0%	160	26.3%	4	25%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
MCMBP	79892	genome.wustl.edu	37	10	121595152	121595152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024834.2	-1	validated	p.S538I	1.000	324	0%	217	31.8%	117	41.8%	benign(0.045)	deleterious(0.05)	neutral(0.348)	HMMPfam_DUF2044
MCMBP	79892	genome.wustl.edu	37	10	121602056	121602056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024834.2	-1	validated	p.G353V	0.998	352	0%	250	25.2%	84	54.7%	benign(0.344)	tolerated(0.33)	neutral(0.133)	HMMPfam_DUF2044
SEC23IP	11196	genome.wustl.edu	37	10	121691751	121691751	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007190.2	+1	reviewed	p.T893	0.889	273	0%	191	30.4%	31	35.4%	-	-	-	HMMPfam_DDHD
SEC23IP	11196	genome.wustl.edu	37	10	121692595	121692595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007190.2	+1	reviewed	p.R946H	1.000	177	0%	135	31.9%	29	17.2%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_DDHD
WDR11	55717	genome.wustl.edu	37	10	122618293	122618293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018117.11	+1	reviewed	p.A113T	0.256	142	0%	96	24%	21	33.3%	benign(0)	tolerated(1)	-	HMMSmart_WD40,superfamily_WD40_like
ATE1	11101	genome.wustl.edu	37	10	123503218	123503218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001976.1	-1	reviewed	p.R512W	0.853	154	0%	114	35.1%	16	31.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TACC2	10579	genome.wustl.edu	37	10	123842360	123842360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491540	+1	known	p.V129M	0.042	59	0%	33	39.4%	0	-	-	-	-	NULL
TACC2	10579	genome.wustl.edu	37	10	123846079	123846079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206862.2	+1	reviewed	p.A1355D	0.001	53	0%	22	18.2%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
TACC2	10579	genome.wustl.edu	37	10	123971092	123971092	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206862.2	+1	reviewed	p.S2384	1.000	506	0.2%	278	33.8%	30	53.3%	-	-	-	NULL
PLEKHA1	59338	genome.wustl.edu	37	10	124184473	124184473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001974.1	+1	validated	p.Q270*	1.000	172	0%	101	9.9%	50	6%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
PLEKHA1	59338	genome.wustl.edu	37	10	124189338	124189338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001974.1	+1	validated	p.A367T	1.000	175	0%	105	29.5%	60	53.3%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
PLEKHA1	59338	genome.wustl.edu	37	10	124189424	124189424	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001974.1	+1	validated	p.D395	0.980	104	0%	57	15.8%	67	16.4%	-	-	-	NULL
HTRA1	5654	genome.wustl.edu	37	10	124273725	124273725	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002775.4	+1	reviewed	p.N431	0.320	536	0%	275	20.7%	76	15.7%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DMBT1	1755	genome.wustl.edu	37	10	124380665	124380665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.V1664M	1.000	460	0.2%	204	30.9%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
DMBT1	1755	genome.wustl.edu	37	10	124389423	124389423	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.P1783	0.019	720	0%	399	30.6%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DMBT1	1755	genome.wustl.edu	37	10	124395638	124395638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.R2098H	0.985	77	0%	43	25.6%	0	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DMBT1	1755	genome.wustl.edu	37	10	124402642	124402642	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.V2324M	0.000	204	0%	96	22.9%	3	66.6%	probably_damaging(0.978)	tolerated(0.17)	deleterious(0.479)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
DMBT1	1755	genome.wustl.edu	37	10	124402855	124402855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.V2395I	0.117	56	0%	54	24.1%	5	0%	probably_damaging(0.974)	tolerated(0.24)	neutral(0.453)	NULL
C10orf88	80007	genome.wustl.edu	37	10	124697330	124697330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024942.3	-1	validated	p.L332M	1.000	404	0.5%	321	31.5%	6	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
BUB3	9184	genome.wustl.edu	37	10	124919971	124919971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004725.3	+1	reviewed	p.G156S	1.000	242	0%	127	29.9%	126	42.8%	benign(0.005)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CPXM2	119587	genome.wustl.edu	37	10	125557566	125557566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.R272H	1.000	231	0%	125	11.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
CHST15	51363	genome.wustl.edu	37	10	125804259	125804259	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015892.2	-1	validated	p.A241	0.021	41	0%	29	17.2%	4	0%	-	-	-	NULL
METTL10	399818	genome.wustl.edu	37	10	126453989	126453989	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368836	-1	known	p.K196	1.000	382	0%	238	26.1%	11	36.3%	-	-	-	superfamily_SSF53335
FAM175B	23172	genome.wustl.edu	37	10	126523198	126523198	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032182.3	+1	validated	p.S302	0.795	92	0%	66	27.3%	20	45%	-	-	-	NULL
CTBP2	1488	genome.wustl.edu	37	10	126715782	126715782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022802.2	-1	reviewed	p.A183T	0.042	49	0%	27	14.8%	0	-	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	NULL
BCCIP	56647	genome.wustl.edu	37	10	127524760	127524760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078468.2	+1	reviewed	p.T288S	1.000	371	0%	191	30.9%	31	25.8%	benign(0.039)	tolerated(0.32)	neutral(0.026)	NULL
DHX32	55760	genome.wustl.edu	37	10	127548181	127548181	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018180.2	-1	reviewed	p.A280	1.000	138	0%	92	20.7%	11	18.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAM12	8038	genome.wustl.edu	37	10	127782691	127782691	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003474.4	-1	reviewed	p.D339	1.000	197	0%	79	21.5%	2	0%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM12	8038	genome.wustl.edu	37	10	127789743	127789743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003474.4	-1	reviewed	p.C273Y	1.000	119	0%	64	32.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAM12	8038	genome.wustl.edu	37	10	127806766	127806766	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003474.4	-1	reviewed	p.S151	0.990	223	0%	117	27.4%	2	0%	-	-	-	HMMPfam_Pep_M12B_propep
C10orf90	118611	genome.wustl.edu	37	10	128193241	128193241	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004298.2	-1	validated	p.A176	0.000	73	0%	46	30.4%	0	-	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	128798503	128798503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.R306H	0.994	282	0%	171	21.6%	11	36.3%	benign(0.157)	tolerated(0.22)	neutral(0.056)	NULL
DOCK1	1793	genome.wustl.edu	37	10	128821552	128821552	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.T451	0.020	654	0.2%	385	30.1%	15	46.6%	-	-	-	NULL
DOCK1	1793	genome.wustl.edu	37	10	129231684	129231684	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.G1729	1.000	242	0%	104	14.4%	25	28%	-	-	-	NULL
PTPRE	5791	genome.wustl.edu	37	10	129868019	129868019	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006504.4	+1	reviewed	p.A357	0.000	106	0%	55	14.5%	5	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MKI67	4288	genome.wustl.edu	37	10	129899557	129899557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.R3224W	0.037	250	0.4%	143	26.6%	32	34.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MKI67	4288	genome.wustl.edu	37	10	129904112	129904112	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.R1998*	0.000	933	0%	522	14.4%	26	26.9%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129911833	129911833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.R505H	1.000	266	0%	155	29.7%	9	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MKI67	4288	genome.wustl.edu	37	10	129913772	129913772	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.G300	0.000	162	0.6%	88	20.5%	4	75%	-	-	-	NULL
TCERG1L	256536	genome.wustl.edu	37	10	133106524	133106524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174937.3	-1	validated	p.P207H	0.643	67	0%	29	44.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
JAKMIP3	282973	genome.wustl.edu	37	10	133949491	133949491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105521.2	+1	provisional	p.R343C	1.000	14	0%	12	41.7%	0	-	probably_damaging(0.995)	tolerated(0.14)	deleterious(0.707)	NULL
TTC40	54777	genome.wustl.edu	37	10	134626329	134626329	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368586	-1	known	p.S2487	0.110	43	0%	18	50%	0	-	-	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	135026363	135026363	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152643.6	+1	validated	p.G1460	0.539	24	0%	19	42.1%	0	-	-	-	-	superfamily_Ras GEF
VENTX	27287	genome.wustl.edu	37	10	135053571	135053571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014468.2	+1	reviewed	p.L180M	0.004	39	0%	21	23.8%	1	0%	probably_damaging(0.964)	tolerated(0.19)	neutral(0.456)	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135106129	135106129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006659.2	-1	validated	p.S363I	1.000	25	0%	24	25%	63	46%	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_Spc97_Spc98
ECHS1	1892	genome.wustl.edu	37	10	135179506	135179506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004092.3	-1	reviewed	p.A238V	0.204	54	0%	37	35.1%	350	56.5%	possibly_damaging(0.819)	tolerated(0.27)	neutral(0.343)	superfamily_SSF52096
PAOX	196743	genome.wustl.edu	37	10	135203130	135203130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152911.2	+1	validated	p.R424Q	0.997	38	0%	16	37.5%	6	50%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
SYCE1	93426	genome.wustl.edu	37	10	135372422	135372422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143764.1	-1	validated	p.A77D	0.486	82	0%	40	22.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SIRT3	23410	genome.wustl.edu	37	11	218977	218977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012239.5	-1	validated	p.R345Q	0.974	115	0%	60	20%	24	45.8%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	superfamily_SSF52467
SIRT3	23410	genome.wustl.edu	37	11	219015	219015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012239.5	-1	validated	p.E332D	0.443	92	0%	51	27.5%	29	20.6%	benign(0.003)	tolerated(0.26)	neutral(0.034)	superfamily_SSF52467
ANO9	338440	genome.wustl.edu	37	11	418955	418955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012302.2	-1	validated	p.V657I	0.256	46	0%	19	21.1%	7	28.5%	benign(0.187)	tolerated(0.44)	neutral(0.030)	HMMPfam_DUF590
DEAF1	10522	genome.wustl.edu	37	11	680973	680973	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021008.2	-1	validated	p.A329	0.042	70	0%	36	41.7%	47	42.5%	-	-	-	NULL
TALDO1	6888	genome.wustl.edu	37	11	759053	759053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006755.1	+1	reviewed	p.A109T	0.953	107	0%	49	22.4%	410	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transaldolase,superfamily_SSF51569
SNORA52	619565	genome.wustl.edu	37	11	811728	811728	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002585.1	+1	provisional	NULL	1.000	80	0%	41	31.7%	3	0%	-	-	-	-
MUC5B	727897	genome.wustl.edu	37	11	1262637	1262637	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.W1512*	1.000	37	0%	15	40%	7	0%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271142	1271142	+	Silent	SNP	C	C	A	rs184417075	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.P4347	0.000	74	0%	52	21.2%	58	70.6%	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1271334	1271334	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T4411	0.000	71	0%	36	30.6%	43	62.7%	-	-	-	NULL
KRTAP5-3	387266	genome.wustl.edu	37	11	1628992	1628992	+	Silent	SNP	G	G	T	rs60210378	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012708.2	-1	validated	p.G208	1.000	643	0.3%	350	27.1%	0	-	-	-	-	NULL
IGF2	3481	genome.wustl.edu	37	11	2161401	2161401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127598.1	-1	reviewed	p.E42D	0.991	29	0%	25	44%	0	-	benign(0.056)	deleterious(0.01)	neutral(0.409)	NULL
CARS	833	genome.wustl.edu	37	11	3028125	3028125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014437.1	-1	reviewed	p.R711	1.000	192	0%	75	18.7%	86	50%	-	-	-	NULL
ZNF195	7748	genome.wustl.edu	37	11	3380861	3380861	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130520.1	-1	validated	p.I459	0.792	727	0%	421	13.5%	23	26%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NUP98	4928	genome.wustl.edu	37	11	3723908	3723908	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.G1099	0.998	155	0%	85	29.4%	45	33.3%	-	-	-	NULL
NUP98	4928	genome.wustl.edu	37	11	3733849	3733849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.S896N	1.000	422	0%	289	30.1%	47	46.8%	benign(0.005)	tolerated(0.43)	neutral(0.013)	NULL
NUP98	4928	genome.wustl.edu	37	11	3744587	3744587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.P649L	1.000	162	0%	112	30.4%	31	35.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
PGAP2	27315	genome.wustl.edu	37	11	3838631	3838631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014489.2	+1	validated	p.D72N	0.997	122	0.8%	62	25.8%	2	50%	benign(0.023)	deleterious(0.02)	neutral(0.384)	NULL
RHOG	391	genome.wustl.edu	37	11	3849087	3849087	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001665.3	-1	validated	p.R94	1.000	59	0%	30	26.7%	111	35.1%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM21	6737	genome.wustl.edu	37	11	4406849	4406849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003141.3	-1	reviewed	p.R365M	1.000	150	0%	73	11%	21	4.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SPRY,HMMSmart_SPRY
OR52K2	119774	genome.wustl.edu	37	11	4471232	4471232	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005172.2	+1	validated	p.I221	0.000	2296	0%	1441	29.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52I2	143502	genome.wustl.edu	37	11	4608098	4608098	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005170.2	+1	validated	p.N19T	0.099	375	0%	273	31.5%	0	-	benign(0.079)	tolerated(0.21)	neutral(0.049)	superfamily_SSF81321
OR52I1	390037	genome.wustl.edu	37	11	4615989	4615989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005169.1	+1	validated	p.A241S	1.000	712	0%	418	27%	0	-	possibly_damaging(0.794)	tolerated(0.06)	deleterious(0.621)	HMMPfam_7tm_1,superfamily_SSF81321
OR51E2	81285	genome.wustl.edu	37	11	4703877	4703877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030774.3	-1	validated	p.A22V	0.152	218	0%	123	27.6%	0	-	benign(0.117)	tolerated(1)	neutral(0.009)	superfamily_Family A G protein-coupled receptor-like
OR52R1	119695	genome.wustl.edu	37	11	4824796	4824796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005177.3	-1	validated	p.P351L	0.001	482	0%	289	21.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52R1	119695	genome.wustl.edu	37	11	4825793	4825793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005177.3	-1	validated	p.S19P	0.001	174	0%	143	41.3%	0	-	benign(0.023)	-	-	NULL
OR51T1	401665	genome.wustl.edu	37	11	4903926	4903926	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004759.1	+1	provisional	p.L293R	0.002	514	0%	410	30.5%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51G2	81282	genome.wustl.edu	37	11	4936501	4936501	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005238.1	-1	provisional	p.I131	0.971	125	0%	104	22.1%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4968229	4968229	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005329.1	-1	provisional	p.C34	0.001	477	0.4%	293	31.7%	0	-	-	-	-	superfamily_SSF81321
MMP26	56547	genome.wustl.edu	37	11	5010932	5010932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021801.3	+1	reviewed	p.E52K	0.000	88	0%	55	16.4%	6	0%	benign(0.415)	tolerated(0.76)	neutral(0.136)	NULL
OR51L1	119682	genome.wustl.edu	37	11	5021020	5021020	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004755.1	+1	provisional	p.L270	0.001	269	0%	144	30.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52J3	119679	genome.wustl.edu	37	11	5068240	5068240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001916.2	+1	validated	p.V162A	0.022	326	0%	231	25.5%	0	-	benign(0.008)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52E2	119678	genome.wustl.edu	37	11	5080819	5080819	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005164.2	-1	validated	p.S13	0.992	257	0%	212	23.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
HBG2	3048	genome.wustl.edu	37	11	5274485	5274485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380247	-1	known	p.S155I	0.001	377	0%	257	24.5%	0	-	unknown(0)	-	-	NULL
OR51B4	79339	genome.wustl.edu	37	11	5322417	5322417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.G254R	0.914	241	0%	128	11.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51B4	79339	genome.wustl.edu	37	11	5322770	5322770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.S136F	0.010	484	0.4%	273	10.6%	0	-	possibly_damaging(0.822)	deleterious(0.02)	deleterious(0.694)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
UBQLN3	50613	genome.wustl.edu	37	11	5529416	5529416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017481.2	-1	reviewed	p.A458D	0.001	120	0.8%	68	14.7%	0	-	benign(0.012)	deleterious(0.02)	neutral(0.384)	NULL
UBQLNL	143630	genome.wustl.edu	37	11	5536502	5536502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145053.4	-1	validated	p.Q390H	0.002	274	0%	162	29%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
UBQLNL	143630	genome.wustl.edu	37	11	5536751	5536751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145053.4	-1	validated	p.Q307H	0.005	205	0%	123	28.5%	4	0%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	NULL
OR52B6	340980	genome.wustl.edu	37	11	5602923	5602923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005162.2	+1	validated	p.P273T	0.937	872	0%	413	20.6%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_7tm_1,superfamily_SSF81321
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5626762	5626762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003819.2	+1	reviewed	p.R267C	0.331	234	0%	154	35.7%	4	0%	possibly_damaging(0.838)	tolerated(0.05)	deleterious(0.665)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730528	5730528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006074.3	+1	reviewed	p.S383R	0.000	445	0%	314	24.8%	7	0%	benign(0.031)	tolerated(0.53)	neutral(0.009)	HMMPfam_SPRY,HMMSmart_SM00449
TRIM22	10346	genome.wustl.edu	37	11	5730788	5730788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006074.3	+1	reviewed	p.F469L	0.996	664	0.2%	373	28.7%	10	0%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_SPRY,HMMSmart_SM00449
OR52N4	390072	genome.wustl.edu	37	11	5776483	5776483	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005175.2	+1	validated	p.C171*	0.866	542	0.4%	417	27.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52N5	390075	genome.wustl.edu	37	11	5799307	5799307	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001922.2	-1	validated	p.T186	0.083	215	0%	189	37%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52N1	79473	genome.wustl.edu	37	11	5809314	5809314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001913.1	-1	provisional	p.A245T	0.995	209	0%	170	42.4%	0	-	benign(0.155)	deleterious(0.02)	neutral(0.397)	HMMPfam_7tm_1,superfamily_SSF81321
OR52E6	390078	genome.wustl.edu	37	11	5862795	5862795	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005167.1	-1	provisional	p.V111	0.000	1198	0%	860	29.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR56A5	390084	genome.wustl.edu	37	11	5989013	5989013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343047.1	-1	model	p.A238T	0.002	81	0%	52	36.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C11orf42	160298	genome.wustl.edu	37	11	6231334	6231334	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173525.2	+1	validated	p.A109	1.000	282	0%	171	26.9%	1	0%	-	-	-	NULL
FAM160A2	84067	genome.wustl.edu	37	11	6232914	6232914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.R928H	1.000	279	0%	122	27%	22	45.4%	probably_damaging(0.974)	tolerated(0.15)	deleterious(0.657)	NULL
FAM160A2	84067	genome.wustl.edu	37	11	6243818	6243818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.A349T	1.000	272	0%	144	27.1%	25	40%	benign(0.11)	tolerated(0.39)	neutral(0.025)	HMMPfam_RAI16-like
FAM160A2	84067	genome.wustl.edu	37	11	6244425	6244425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.R274Q	1.000	580	0%	338	30.2%	21	38%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_RAI16-like
FAM160A2	84067	genome.wustl.edu	37	11	6245337	6245337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.G94R	1.000	137	0.7%	65	32.3%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNGA4	1262	genome.wustl.edu	37	11	6261771	6261771	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037329.2	+1	validated	p.G249	0.027	254	0%	115	27.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCKBR	887	genome.wustl.edu	37	11	6292299	6292299	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176875.2	+1	reviewed	p.S290	0.027	99	0%	68	32.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SMPD1	6609	genome.wustl.edu	37	11	6413064	6413064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000543.3	+1	reviewed	p.R257W	0.995	178	0%	85	28.2%	15	60%	benign(0.108)	tolerated(0.22)	neutral(0.051)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
TRIM3	10612	genome.wustl.edu	37	11	6479526	6479526	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006458.2	-1	reviewed	p.R44S	1.000	73	0%	32	31.2%	62	53.2%	benign(0.025)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
DNHD1	144132	genome.wustl.edu	37	11	6592174	6592174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.R4478W	0.001	69	0%	28	21.4%	9	88.8%	probably_damaging(0.988)	tolerated(0.18)	deleterious(0.493)	HMMPfam_Dynein_heavy
DNHD1	144132	genome.wustl.edu	37	11	6592590	6592590	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.G4616	0.000	42	0%	20	30%	6	33.3%	-	-	-	HMMPfam_Dynein_heavy
DNHD1	144132	genome.wustl.edu	37	11	6593126	6593126	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.N4724	0.391	327	0.3%	176	27.3%	6	50%	-	-	-	HMMPfam_Dynein_heavy
RRP8	23378	genome.wustl.edu	37	11	6622574	6622574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015324.2	-1	provisional	p.R241H	1.000	42	0%	28	14.3%	25	32%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Methyltransf_8
RRP8	23378	genome.wustl.edu	37	11	6623432	6623432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015324.2	-1	provisional	p.R38H	0.665	78	0%	50	12%	14	7.1%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
TPP1	1200	genome.wustl.edu	37	11	6640652	6640652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453338	-1	known	p.A3S	0.362	348	0%	136	10.3%	0	-	-	-	-	NULL
DCHS1	8642	genome.wustl.edu	37	11	6644937	6644937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.G2657D	0.980	68	0%	45	11.1%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6651015	6651015	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.D1641	0.944	44	0%	21	38.1%	7	0%	-	-	-	HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6653279	6653279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.R1155H	1.000	78	0%	43	30.2%	1	0%	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DCHS1	8642	genome.wustl.edu	37	11	6655525	6655525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.D604Y	1.000	242	0%	134	26.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
OR10A4	283297	genome.wustl.edu	37	11	6898655	6898655	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207186.2	+1	validated	p.T259	0.592	444	0.5%	283	31.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SYT9	143425	genome.wustl.edu	37	11	7441849	7441849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175733.3	+1	validated	p.W484R	1.000	223	0%	132	28.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2_CaLB
OLFML1	283298	genome.wustl.edu	37	11	7530690	7530690	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198474.3	+1	validated	p.T160	0.763	518	0%	329	27.7%	0	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
OLFML1	283298	genome.wustl.edu	37	11	7530991	7530991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198474.3	+1	validated	p.V261I	0.046	212	0%	113	16.8%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_OLF,HMMSmart_SM00284
PPFIBP2	8495	genome.wustl.edu	37	11	7652210	7652210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003621.2	+1	validated	p.S340N	0.999	408	0%	208	26.4%	4	50%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
OVCH2	341277	genome.wustl.edu	37	11	7712508	7712508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198185.2	-1	validated	p.P544H	0.122	66	0%	51	37.3%	0	-	benign(0)	tolerated(0.12)	neutral(0.261)	superfamily_Spermadhesin CUB domain
OVCH2	341277	genome.wustl.edu	37	11	7716368	7716368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198185.2	-1	validated	p.S445N	1.000	22	0%	17	41.2%	0	-	probably_damaging(0.996)	tolerated(0.12)	deleterious(0.722)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
OVCH2	341277	genome.wustl.edu	37	11	7718311	7718311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198185.2	-1	validated	p.A321T	0.000	108	0%	58	20.7%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
NLRP10	338322	genome.wustl.edu	37	11	7982612	7982612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176821.3	-1	reviewed	p.A183T	0.609	133	0%	75	22.7%	0	-	benign(0.061)	tolerated(0.2)	neutral(0.053)	HMMPfam_NACHT,superfamily_SSF52540
EIF3F	8665	genome.wustl.edu	37	11	8016556	8016556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003754.2	+1	validated	p.S258I	0.997	230	0%	126	23%	569	28.6%	benign(0.042)	deleterious(0.03)	neutral(0.367)	NULL
RIC3	79608	genome.wustl.edu	37	11	8161624	8161624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024557.3	-1	validated	p.G81*	1.000	397	0%	273	29.7%	0	-	-	-	-	NULL
RIC3	79608	genome.wustl.edu	37	11	8161725	8161725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024557.3	-1	validated	p.F47C	1.000	307	0%	208	13%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LMO1	4004	genome.wustl.edu	37	11	8246187	8246187	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002315.1	-1	reviewed	p.G149	1.000	12	0.000	9	0.444	0	-	-	-	-	NULL
LMO1	4004	genome.wustl.edu	37	11	8252034	8252034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002315.1	-1	reviewed	p.V15I	1.000	127	0%	51	29.4%	0	-	benign(0.005)	tolerated(0.53)	neutral(0.007)	NULL
ST5	6764	genome.wustl.edu	37	11	8724243	8724243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.D866Y	1.000	157	0.6%	80	28.7%	31	32.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DENN,HMMSmart_SM00799
ASCL3	56676	genome.wustl.edu	37	11	8959343	8959343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020646.1	-1	provisional	p.E122D	0.997	284	0%	144	26.4%	0	-	benign(0.088)	tolerated(0.47)	neutral(0.017)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
NRIP3	56675	genome.wustl.edu	37	11	9009770	9009770	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020645.2	-1	validated	p.S78	0.987	321	0%	222	28.8%	0	-	-	-	-	NULL
DENND5A	23258	genome.wustl.edu	37	11	9173909	9173909	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015213.2	-1	validated	p.T839	0.990	390	0.5%	245	11.8%	40	10%	-	-	-	HMMPfam_RUN
SBF2	81846	genome.wustl.edu	37	11	9803131	9803131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.A1792T	1.000	320	0%	159	29.6%	8	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
SBF2	81846	genome.wustl.edu	37	11	9853898	9853898	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.Y1175*	1.000	250	0%	158	35.4%	11	18.1%	-	-	-	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
SBF2	81846	genome.wustl.edu	37	11	9853909	9853909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.A1172T	0.996	262	0%	157	10.2%	12	50%	benign(0.383)	deleterious(0.02)	deleterious(0.506)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
ADM	133	genome.wustl.edu	37	11	10328148	10328148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124.1	+1	reviewed	p.A173D	0.000	17	0.000	9	0.444	132	50%	unknown(0)	deleterious(0)	-	HMMPfam_Adrenomedullin
AMPD3	272	genome.wustl.edu	37	11	10483244	10483244	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000480.2	+1	reviewed	p.Q69*	1.000	113	0%	60	15%	1	0%	-	-	-	NULL
AMPD3	272	genome.wustl.edu	37	11	10527394	10527394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000480.2	+1	reviewed	p.A765D	1.000	187	0%	92	32.6%	4	100%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
MRVI1	10335	genome.wustl.edu	37	11	10647910	10647910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098579.1	-1	reviewed	p.G315D	0.023	48	0%	24	20.8%	0	-	probably_damaging(0.977)	deleterious(0.03)	deleterious(0.783)	HMMPfam_MRVI1
CTR9	9646	genome.wustl.edu	37	11	10785276	10785276	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014633.3	+1	provisional	p.G348	1.000	299	0.3%	200	25.5%	35	62.8%	-	-	-	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
CTR9	9646	genome.wustl.edu	37	11	10794117	10794117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014633.3	+1	provisional	p.R832H	1.000	107	0%	64	9.4%	70	18.5%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
GALNTL4	374378	genome.wustl.edu	37	11	11362396	11362396	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.H416	0.995	1284	0.3%	723	26.3%	3	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
GALNTL4	374378	genome.wustl.edu	37	11	11454265	11454265	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.A166	0.000	66	0%	27	18.5%	4	0%	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
FAR1	84188	genome.wustl.edu	37	11	13749178	13749178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032228.5	+1	validated	p.V445I	1.000	187	0%	138	34.1%	8	62.5%	benign(0.176)	tolerated(1)	neutral(0.016)	HMMPfam_Sterile
SPON1	10418	genome.wustl.edu	37	11	14287081	14287081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000310358	+1	known	p.R757C	1.000	53	0%	36	27.8%	4	25%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
COPB1	1315	genome.wustl.edu	37	11	14487883	14487883	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144061.1	-1	reviewed	p.V745	1.000	311	0%	220	11.8%	279	25%	-	-	-	HMMPfam_Coatamer_beta_C
PSMA1	5682	genome.wustl.edu	37	11	14535413	14535413	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148976.2	-1	reviewed	p.R128*	0.855	157	0%	95	11.6%	322	3.4%	-	-	-	HMMPfam_Proteasome,superfamily_SSF56235
PDE3B	5140	genome.wustl.edu	37	11	14856557	14856557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000922.3	+1	validated	p.L746I	1.000	230	0%	119	24.4%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
SOX6	55553	genome.wustl.edu	37	11	16010764	16010764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017508.2	-1	reviewed	p.M558T	1.000	103	0%	64	29.7%	0	-	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
PLEKHA7	144100	genome.wustl.edu	37	11	16848083	16848083	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175058.4	-1	validated	p.S309	0.974	137	0%	57	15.8%	5	0%	-	-	-	NULL
PIK3C2A	5286	genome.wustl.edu	37	11	17150988	17150988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.Q753R	0.999	248	0%	144	29.9%	3	66.6%	benign(0.007)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00239,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NUCB2	4925	genome.wustl.edu	37	11	17332749	17332749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005013.2	+1	validated	p.D227Y	1.000	571	0%	372	13.4%	88	20.4%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
KCNJ11	3767	genome.wustl.edu	37	11	17408534	17408534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000525.3	-1	reviewed	p.R369C	0.994	41	0%	19	26.3%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCC8	6833	genome.wustl.edu	37	11	17470189	17470189	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000352.3	-1	reviewed	p.L402	1.000	324	0%	197	24.9%	1	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
USH1C	10083	genome.wustl.edu	37	11	17547986	17547986	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153676.3	-1	reviewed	p.G194	0.000	50	0%	12	41.7%	0	-	-	-	-	superfamily_PDZ
MRGPRX3	117195	genome.wustl.edu	37	11	18158885	18158885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.A46T	0.951	301	0%	141	10.6%	0	-	benign(0.333)	tolerated(0.1)	neutral(0.391)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MRGPRX3	117195	genome.wustl.edu	37	11	18159006	18159006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.R86H	0.000	314	0%	167	29.9%	0	-	benign(0.026)	tolerated(0.54)	neutral(0.009)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SAA2	6289	genome.wustl.edu	37	11	18269467	18269467	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030754.3	-1	validated	e1+1	0.990	159	0%	65	15.4%	0	-	-	-	-	-
SAA1	6288	genome.wustl.edu	37	11	18288489	18288489	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000331.4	+1	reviewed	p.R19*	0.000	221	0%	118	28%	9	0%	-	-	-	NULL
HPS5	11234	genome.wustl.edu	37	11	18332396	18332396	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181507.1	-1	reviewed	p.G123	1.000	211	0%	133	33.1%	5	60%	-	-	-	superfamily_WD40 repeat-like
MRGPRX1	259249	genome.wustl.edu	37	11	18955913	18955913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147199.3	-1	provisional	p.A140V	0.003	138	0%	60	11.7%	0	-	benign(0.035)	tolerated(0.11)	neutral(0.274)	HMMPfam_7tm_1,superfamily_SSF81321
MRGPRX1	259249	genome.wustl.edu	37	11	18993925	18993925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412783	-1	known	p.G109C	0.028	134	0%	52	36.5%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
MRGPRX2	117194	genome.wustl.edu	37	11	19077037	19077037	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054030.2	-1	provisional	p.Q305*	0.898	199	0%	128	21.9%	0	-	-	-	-	NULL
E2F8	79733	genome.wustl.edu	37	11	19246386	19246386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.P808H	1.000	137	0.7%	70	10%	7	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
E2F8	79733	genome.wustl.edu	37	11	19247142	19247142	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.S683A	0.991	334	0%	202	28.7%	15	53.3%	possibly_damaging(0.671)	tolerated(0.23)	neutral(0.279)	NULL
E2F8	79733	genome.wustl.edu	37	11	19251279	19251279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024680.2	-1	validated	p.G539C	1.000	189	0%	98	29.6%	5	60%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
NAV2	89797	genome.wustl.edu	37	11	19955130	19955130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.R447H	0.898	102	0%	61	13.1%	2	0%	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	NULL
NAV2	89797	genome.wustl.edu	37	11	20127104	20127104	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.E2227	1.000	104	0%	53	26.4%	9	55.5%	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAV2	89797	genome.wustl.edu	37	11	20127175	20127175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.R2251H	1.000	96	0%	46	39.1%	16	50%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
PRMT3	10196	genome.wustl.edu	37	11	20429518	20429518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005788.3	+1	validated	p.A278V	1.000	240	0%	148	28.4%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT3	10196	genome.wustl.edu	37	11	20486022	20486022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005788.3	+1	validated	p.T426M	0.507	140	0%	92	28.3%	13	38.4%	possibly_damaging(0.793)	deleterious(0.01)	deleterious(0.704)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SLC6A5	9152	genome.wustl.edu	37	11	20628552	20628552	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004211.3	+1	reviewed	e4-1	1.000	181	0%	71	39.4%	0	-	-	-	-	-
NELL1	4745	genome.wustl.edu	37	11	20982002	20982002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006157.3	+1	reviewed	p.P399H	1.000	337	0%	214	19.6%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
ANO5	203859	genome.wustl.edu	37	11	22247577	22247577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.E114D	0.780	120	0%	98	27.6%	0	-	benign(0.028)	tolerated(0.23)	neutral(0.043)	NULL
ANO5	203859	genome.wustl.edu	37	11	22283681	22283681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213599.2	+1	reviewed	p.P546H	1.000	342	0%	265	14.7%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
SLC17A6	57084	genome.wustl.edu	37	11	22381073	22381073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020346.2	+1	validated	p.E191D	1.000	116	0%	80	33.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SVIP	258010	genome.wustl.edu	37	11	22849410	22849410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148893.1	-1	provisional	p.R22I	1.000	146	0.7%	63	15.9%	57	24.5%	benign(0.17)	deleterious(0)	neutral(0.460)	NULL
LGR4	55366	genome.wustl.edu	37	11	27406951	27406951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018490.2	-1	validated	p.R156W	0.995	153	0%	110	19.1%	48	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,superfamily_SSF52058
BDNF	627	genome.wustl.edu	37	11	27679696	27679696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143810.1	-1	reviewed	p.S221I	1.000	295	0%	148	24.3%	1	0%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMPfam_NGF,HMMSmart_NGF,superfamily_SSF57501
BDNF	627	genome.wustl.edu	37	11	27680061	27680061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143810.1	-1	reviewed	p.K99N	1.000	361	0.3%	163	10.4%	1	0%	possibly_damaging(0.605)	deleterious(0.01)	deleterious(0.615)	NULL
KIF18A	81930	genome.wustl.edu	37	11	28080525	28080525	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031217.3	-1	validated	p.I632	0.760	752	0.1%	624	28.7%	8	0%	-	-	-	NULL
KCNA4	3739	genome.wustl.edu	37	11	30033616	30033616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002233.2	-1	reviewed	p.D204Y	0.994	420	0%	231	29.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
MPPED2	744	genome.wustl.edu	37	11	30601839	30601839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001584.2	-1	reviewed	p.H28N	1.000	307	0.3%	202	19.3%	24	50%	possibly_damaging(0.677)	tolerated(0.5)	neutral(0.251)	NULL
DNAJC24	120526	genome.wustl.edu	37	11	31447891	31447891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181706.4	+1	validated	p.S103Y	1.000	96	0%	58	20.7%	4	50%	possibly_damaging(0.92)	tolerated(0.08)	deleterious(0.671)	superfamily_Chaperone J-domain,HMMPfam_zf-CSL
IMMP1L	196294	genome.wustl.edu	37	11	31455021	31455021	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144981.1	-1	provisional	p.R140*	1.000	255	0%	207	25.6%	28	39.2%	-	-	-	superfamily_Pept_S24_S26_C
ELP4	26610	genome.wustl.edu	37	11	31625384	31625384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019040.3	+1	reviewed	p.I195F	0.004	209	0%	166	30.7%	27	40.7%	possibly_damaging(0.691)	tolerated(0.64)	neutral(0.251)	HMMPfam_PAXNEB
CCDC73	493860	genome.wustl.edu	37	11	32637619	32637619	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.N414	0.001	93	0%	83	34.9%	0	-	-	-	-	NULL
QSER1	79832	genome.wustl.edu	37	11	32977616	32977616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076786.1	+1	provisional	p.Y1438C	1.000	383	0%	210	30%	19	63.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TCP11L1	55346	genome.wustl.edu	37	11	33080510	33080510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145541.1	+1	validated	p.I215N	0.992	273	0%	162	34%	6	16.6%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	HMMPfam_Tcp11
TCP11L1	55346	genome.wustl.edu	37	11	33090276	33090276	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145541.1	+1	validated	p.V400L	0.996	88	0%	42	16.7%	13	15.3%	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMPfam_Tcp11
C11orf41	25758	genome.wustl.edu	37	11	33566440	33566440	+	Silent	SNP	C	C	T	rs138956370	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012194.1	+1	validated	p.A676	0.000	109	0%	59	32.2%	6	33.3%	-	-	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33566739	33566739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012194.1	+1	validated	p.R776H	0.893	352	0.3%	208	10.6%	8	12.5%	benign(0.091)	tolerated(0.08)	neutral(0.306)	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34101202	34101202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005898.4	+1	validated	p.R239H	1.000	160	0%	115	30.4%	186	47.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NAT10	55226	genome.wustl.edu	37	11	34129833	34129833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024662.2	+1	validated	p.R21W	0.999	660	0%	398	24.1%	20	40%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
CAT	847	genome.wustl.edu	37	11	34492943	34492943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001752.3	+1	reviewed	p.G516E	0.026	203	0%	114	32.5%	108	36.1%	possibly_damaging(0.649)	deleterious(0.03)	deleterious(0.593)	NULL
CD44	960	genome.wustl.edu	37	11	35218348	35218348	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428726	+1	known	p.P219H	0.000	128	0%	99	22.2%	0	-	-	-	-	NULL
CD44	960	genome.wustl.edu	37	11	35250855	35250855	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000610.3	+1	reviewed	p.N735T	0.983	243	0%	183	29.5%	64	20.3%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
SLC1A2	6506	genome.wustl.edu	37	11	35336639	35336639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004171.3	-1	reviewed	p.P81T	1.000	223	0.4%	103	24.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1
TRAF6	7189	genome.wustl.edu	37	11	36511925	36511925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004620.2	-1	reviewed	p.I344	0.981	753	0%	466	30.3%	5	40%	-	-	-	NULL
RAG1	5896	genome.wustl.edu	37	11	36596348	36596348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.Q498H	1.000	475	0%	258	25.6%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
RAG1	5896	genome.wustl.edu	37	11	36596928	36596928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.L692F	0.926	199	0%	114	32.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RAG1	5896	genome.wustl.edu	37	11	36597014	36597014	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.G720	0.990	304	0%	192	25%	0	-	-	-	-	NULL
RAG1	5896	genome.wustl.edu	37	11	36597072	36597072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.A740S	1.000	313	0%	180	12.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ALKBH3	221120	genome.wustl.edu	37	11	43923247	43923247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139178.3	+1	validated	p.T214I	0.001	213	0%	96	31.2%	2	0%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
ACCS	84680	genome.wustl.edu	37	11	44100322	44100322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127219.1	+1	validated	p.V274A	0.985	131	0%	63	23.8%	2	0%	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
CD82	3732	genome.wustl.edu	37	11	44626903	44626903	+	Splice_Site	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002231.3	+1	reviewed	e4-2	1.000	65	0%	26	23.1%	1	100%	-	-	-	-
TP53I11	9537	genome.wustl.edu	37	11	44957127	44957127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076787.1	-1	validated	p.G141R	0.955	135	0%	51	13.7%	9	0%	possibly_damaging(0.787)	tolerated(0.09)	deleterious(0.591)	NULL
PRDM11	56981	genome.wustl.edu	37	11	45241270	45241270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020229.2	+1	validated	p.S269I	1.000	34	0%	14	35.7%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
DGKZ	8525	genome.wustl.edu	37	11	46397920	46397920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.L900M	1.000	78	0%	44	40.9%	56	26.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CHRM4	1132	genome.wustl.edu	37	11	46407172	46407172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.E312D	0.995	27	0%	13	38.5%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HARBI1	283254	genome.wustl.edu	37	11	46637545	46637545	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173811.3	-1	validated	p.T81	0.897	247	0%	145	23.4%	3	33.3%	-	-	-	NULL
ATG13	9776	genome.wustl.edu	37	11	46679102	46679102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142673.1	+1	validated	p.G209R	1.000	288	0%	146	27.4%	28	25%	possibly_damaging(0.741)	tolerated(0.43)	neutral(0.285)	HMMPfam_DUF2224
ZNF408	79797	genome.wustl.edu	37	11	46726891	46726891	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024741.2	+1	validated	p.T547	0.001	18	0%	11	63.6%	36	55.5%	-	-	-	superfamily_SSF57667
CKAP5	9793	genome.wustl.edu	37	11	46806073	46806073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.A707T	1.000	580	0%	396	31.8%	77	33.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_ARM repeat
CKAP5	9793	genome.wustl.edu	37	11	46819669	46819669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.Q379H	1.000	367	0%	238	18.1%	45	22.2%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	superfamily_ARM repeat
CKAP5	9793	genome.wustl.edu	37	11	46837837	46837837	+	Missense_Mutation	SNP	C	C	T	rs78408136	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.A124T	1.000	251	0%	145	26.9%	31	38.7%	benign(0.005)	tolerated(0.33)	neutral(0.024)	superfamily_ARM repeat
C11orf49	79096	genome.wustl.edu	37	11	47008801	47008801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003677.1	+1	validated	p.Q30R	1.000	566	0.4%	329	28.3%	9	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARFGAP2	84364	genome.wustl.edu	37	11	47193283	47193283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032389.3	-1	provisional	p.Q247H	1.000	172	0.6%	100	31%	61	45.9%	unknown(0)	tolerated(0.25)	-	NULL
DDB2	1643	genome.wustl.edu	37	11	47259476	47259476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000107.2	+1	reviewed	p.T371M	1.000	178	0%	100	31%	39	69.2%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	superfamily_WD40 repeat-like
NR1H3	10062	genome.wustl.edu	37	11	47283507	47283507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005693.2	+1	validated	p.G309E	0.978	530	0%	239	30.5%	31	12.9%	benign(0)	tolerated(1)	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
MADD	8567	genome.wustl.edu	37	11	47348337	47348337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.V1591I	1.000	118	0%	53	24.5%	20	25%	possibly_damaging(0.947)	tolerated(0.65)	neutral(0.394)	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47353626	47353626	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000256.3	-1	reviewed	p.R1271*	1.000	36	0%	17	23.5%	0	-	-	-	-	superfamily_SSF48726
MYBPC3	4607	genome.wustl.edu	37	11	47364235	47364235	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000256.3	-1	reviewed	p.D506	0.919	63	3.2%	29	17.2%	0	-	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
PTPMT1	114971	genome.wustl.edu	37	11	47593141	47593141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175732.2	+1	validated	p.R189L	0.000	237	0%	90	23.3%	98	44.8%	benign(0.021)	tolerated(0.23)	neutral(0.043)	NULL
KBTBD4	55709	genome.wustl.edu	37	11	47594833	47594833	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018095.4	-1	validated	p.C418*	1.000	260	0%	136	29.4%	44	25%	-	-	-	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
AGBL2	79841	genome.wustl.edu	37	11	47712252	47712252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024783.2	-1	validated	p.M336T	1.000	524	0.2%	334	27.2%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
FNBP4	23360	genome.wustl.edu	37	11	47776108	47776108	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015308.2	-1	validated	p.I141S	1.000	601	0%	373	10.5%	28	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NUP160	23279	genome.wustl.edu	37	11	47814369	47814369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015231.1	-1	validated	p.A1140V	1.000	420	0.2%	211	32.2%	33	39.3%	probably_damaging(0.956)	tolerated(0.09)	deleterious(0.696)	NULL
NUP160	23279	genome.wustl.edu	37	11	47858499	47858499	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015231.1	-1	validated	p.E294	0.995	560	0%	337	23.7%	18	44.4%	-	-	-	NULL
NUP160	23279	genome.wustl.edu	37	11	47861967	47861967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015231.1	-1	validated	p.R163M	0.997	914	0%	501	27.7%	20	55%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48146721	48146721	+	Missense_Mutation	SNP	C	C	T	rs150197673	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002843.3	+1	reviewed	p.A359V	0.000	173	0%	87	23%	5	60%	benign(0.017)	tolerated(0.12)	neutral(0.261)	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48149331	48149331	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002843.3	+1	reviewed	e7-1	0.996	271	0%	135	24.4%	0	-	-	-	-	-
LOC283116	283116	genome.wustl.edu	37	11	49059034	49059034	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_208043.4	+1	model	p.H288	0.049	225	0%	131	29.8%	0	-	-	-	-	NULL
LOC283116	283116	genome.wustl.edu	37	11	49059299	49059299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_208043.4	+1	model	p.L377I	0.001	530	0.2%	302	27.8%	0	-	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_SPRY
FOLH1	2346	genome.wustl.edu	37	11	49170249	49170249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004476.1	-1	reviewed	p.M669L	1.000	151	0%	94	14.9%	36	44.4%	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	HMMPfam_TFR_dimer,superfamily_Transferrin receptor ectodomain C-terminal domain
FOLH1	2346	genome.wustl.edu	37	11	49214400	49214400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004476.1	-1	reviewed	p.N153S	1.000	200	0%	138	20.3%	50	30%	benign(0.03)	deleterious(0.03)	neutral(0.366)	superfamily_Transferrin receptor ectodomain apical domain
ENSG00000123447	0	genome.wustl.edu	37	11	49437200	49437200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000243152	-1	known	p.P36S	1.000	128	0%	104	25%	0	-	-	-	-	superfamily_Di-copper_centre
ENSG00000205035	0	genome.wustl.edu	37	11	49598433	49598433	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357667	+1	known	p.T211	0.998	153	0%	65	27.7%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
TRIM48	79097	genome.wustl.edu	37	11	55038046	55038046	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357530	+1	known	p.W254*	0.419	183	0%	150	22%	0	-	-	-	-	NULL
OR4A16	81327	genome.wustl.edu	37	11	55110920	55110920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005274.1	+1	provisional	p.D82Y	0.675	508	0.2%	442	30.3%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_SSF81321
OR4A15	81328	genome.wustl.edu	37	11	55136281	55136281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005275.1	+1	provisional	p.P308T	0.534	765	0.5%	681	27.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000181943	0	genome.wustl.edu	37	11	55259482	55259482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314657	+1	known	p.S255Y	0.000	293	0%	200	17.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4P4	81300	genome.wustl.edu	37	11	55406465	55406465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004124.1	+1	provisional	p.V211A	0.000	160	0%	133	59.4%	0	-	possibly_damaging(0.921)	tolerated(0.13)	deleterious(0.623)	HMMPfam_7tm_1,superfamily_SSF81321
OR5D14	219436	genome.wustl.edu	37	11	55563064	55563064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004735.1	+1	provisional	p.E11D	0.001	254	0%	177	22%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	superfamily_SSF81321
OR5W2	390148	genome.wustl.edu	37	11	55681306	55681306	+	Missense_Mutation	SNP	G	G	T	rs142170371		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001960.1	-1	provisional	p.F251L	0.998	298	0%	137	29.9%	0	-	benign(0.347)	tolerated(0.17)	neutral(0.169)	HMMPfam_7tm_1,superfamily_SSF81321
OR5I1	10798	genome.wustl.edu	37	11	55703149	55703149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006637.1	-1	reviewed	p.C243Y	1.000	119	0%	88	28.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_SSF81321
OR5F1	338674	genome.wustl.edu	37	11	55761831	55761831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003697.1	-1	provisional	p.T91A	0.000	347	0.3%	226	23%	0	-	benign(0.235)	tolerated(0.52)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
OR8I2	120586	genome.wustl.edu	37	11	55860814	55860814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003750.1	+1	provisional	p.V11I	0.000	431	0%	382	14.1%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	superfamily_Family A G protein-coupled receptor-like
OR5J2	282775	genome.wustl.edu	37	11	55944758	55944758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005492.1	+1	provisional	p.A222D	0.000	305	0%	207	26.6%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T2	219464	genome.wustl.edu	37	11	56000245	56000245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004746.1	-1	provisional	p.Q139H	0.161	612	0.2%	440	29.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR5T1	390155	genome.wustl.edu	37	11	56043454	56043454	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004745.1	+1	provisional	p.F114V	0.000	736	0%	513	31.4%	0	-	possibly_damaging(0.764)	deleterious(0.03)	deleterious(0.648)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000230416	0	genome.wustl.edu	37	11	56216255	56216255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.V38M	0.003	315	0%	231	24.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
ENSG00000230416	0	genome.wustl.edu	37	11	56217059	56217059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.S304	0.082	289	0%	261	28%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237222	56237222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.G251D	0.001	270	0%	204	32.4%	0	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M3	219482	genome.wustl.edu	37	11	56237630	56237630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004742.1	-1	provisional	p.A115V	1.000	479	0.2%	382	27%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
OR5M11	219487	genome.wustl.edu	37	11	56309939	56309939	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005245.1	-1	provisional	p.K265	0.718	334	0.3%	206	22.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR5M10	390167	genome.wustl.edu	37	11	56344882	56344882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004741.1	-1	provisional	p.A106T	0.001	333	0%	176	31.2%	0	-	benign(0.017)	tolerated(0.69)	neutral(0.003)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AP2	338675	genome.wustl.edu	37	11	56409081	56409081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002925.1	-1	provisional	p.V279I	0.906	308	0%	157	24.8%	0	-	benign(0.007)	tolerated(0.8)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5AK2	390181	genome.wustl.edu	37	11	56756821	56756821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005323.1	+1	provisional	p.V145I	0.030	678	0.1%	497	34.2%	0	-	benign(0.078)	tolerated(0.47)	neutral(0.017)	HMMPfam_7tm_1,superfamily_SSF81321
OR5AK2	390181	genome.wustl.edu	37	11	56757098	56757098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005323.1	+1	provisional	p.S237F	1.000	653	0.2%	458	36.9%	0	-	benign(0.367)	deleterious(0)	deleterious(0.561)	HMMPfam_7tm_1,superfamily_SSF81321
APLNR	187	genome.wustl.edu	37	11	57004320	57004320	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005161.4	-1	reviewed	p.V53	0.990	151	0%	81	19.8%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TNKS1BP1	85456	genome.wustl.edu	37	11	57068456	57068456	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033396.2	-1	validated	p.S1677	0.000	235	0%	104	30.8%	124	25%	-	-	-	NULL
SSRP1	6749	genome.wustl.edu	37	11	57094914	57094914	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003146.2	-1	reviewed	p.G619	0.644	297	0.3%	196	29.1%	181	39.7%	-	-	-	NULL
UBE2L6	9246	genome.wustl.edu	37	11	57321910	57321910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004223.3	-1	reviewed	p.V104F	1.000	133	0%	93	21.5%	49	2%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
YPEL4	219539	genome.wustl.edu	37	11	57413844	57413844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145008.2	-1	validated	p.L74I	1.000	76	1.3%	34	29.4%	0	-	benign(0.003)	tolerated(0.3)	neutral(0.029)	HMMPfam_Yippee
ZDHHC5	25921	genome.wustl.edu	37	11	57457893	57457893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015457.2	+1	validated	p.R215H	1.000	421	0.2%	225	34.2%	92	44.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CTNND1	1500	genome.wustl.edu	37	11	57575697	57575697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.S675N	1.000	284	0%	158	31%	62	56.4%	possibly_damaging(0.947)	deleterious(0.01)	deleterious(0.796)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
CTNND1	1500	genome.wustl.edu	37	11	57575928	57575928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.T720A	1.000	460	0%	235	28.9%	85	52.9%	benign(0.026)	tolerated(0.15)	neutral(0.242)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
OR6Q1	219952	genome.wustl.edu	37	11	57799049	57799049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005186.2	+1	validated	p.A209T	0.001	347	0%	212	30.7%	0	-	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10W1	81341	genome.wustl.edu	37	11	58034580	58034580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207374.3	-1	validated	p.L251M	1.000	172	0%	108	24.1%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_7tm_1,superfamily_SSF81321
ZFP91	80829	genome.wustl.edu	37	11	58379202	58379202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053023.3	+1	reviewed	p.P283H	1.000	303	0%	186	21%	30	30%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ZFP91	80829	genome.wustl.edu	37	11	58381795	58381795	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053023.3	+1	reviewed	p.R361*	1.000	322	0%	234	29.1%	43	16.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNTF	1270	genome.wustl.edu	37	11	58390264	58390264	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000614.3	+1	reviewed	p.R13	0.998	122	0%	71	29.6%	0	-	-	-	-	HMMPfam_CNTF,superfamily_4-helical cytokines
GLYATL2	219970	genome.wustl.edu	37	11	58605788	58605788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145016.3	-1	validated	p.V44	0.290	143	0%	84	25%	83	55.4%	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111B	374393	genome.wustl.edu	37	11	58892352	58892352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198947.3	+1	validated	p.G261E	0.003	432	0%	315	27.3%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FAM111B	374393	genome.wustl.edu	37	11	58892857	58892857	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198947.3	+1	validated	p.K429	0.000	563	0%	380	27.4%	12	25%	-	-	-	superfamily_Trypsin-like serine proteases
FAM111B	374393	genome.wustl.edu	37	11	58893622	58893622	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198947.3	+1	validated	p.G684	0.014	466	0%	307	25.7%	10	10%	-	-	-	superfamily_Trypsin-like serine proteases
FAM111A	63901	genome.wustl.edu	37	11	58919530	58919530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142519.1	+1	validated	p.G130V	0.141	295	0%	158	28.5%	31	38.7%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
DTX4	23220	genome.wustl.edu	37	11	58967193	58967193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015177.1	+1	validated	p.A525T	1.000	24	0%	20	35%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ENSG00000225802	0	genome.wustl.edu	37	11	59022989	59022989	+	Missense_Mutation	SNP	C	C	T	rs147719882	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455673	+1	known	p.A50V	1.000	17	0.000	5	0.800	0	-	-	-	-	superfamily_Nucleotidylyl transferase
OSBP	5007	genome.wustl.edu	37	11	59344413	59344413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002556.2	-1	reviewed	p.R716W	1.000	692	0.1%	388	24.5%	45	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
PATL1	219988	genome.wustl.edu	37	11	59419112	59419112	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.Q477*	1.000	57	0%	54	27.8%	13	15.3%	-	-	-	HMMPfam_PAT1
PATL1	219988	genome.wustl.edu	37	11	59419949	59419949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.A472T	0.589	258	0.4%	157	16.6%	12	8.3%	benign(0.01)	tolerated(1)	neutral(0.001)	HMMPfam_PAT1
PATL1	219988	genome.wustl.edu	37	11	59421493	59421493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152716.2	-1	validated	p.R362C	1.000	261	0%	146	23.3%	23	52.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PAT1
STX3	6809	genome.wustl.edu	37	11	59559656	59559656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004177.4	+1	reviewed	p.S145N	1.000	149	0%	65	27.7%	39	58.9%	probably_damaging(0.994)	tolerated(0.28)	deleterious(0.484)	HMMSmart_SM00503,superfamily_t-snare proteins
MS4A4A	51338	genome.wustl.edu	37	11	60073583	60073583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148975.1	+1	reviewed	p.G186A	0.000	218	0%	106	34.9%	12	0%	benign(0.043)	tolerated(0.74)	neutral(0.004)	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60164183	60164183	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.V44	0.038	163	0%	97	35.1%	0	-	-	-	-	NULL
MS4A14	84689	genome.wustl.edu	37	11	60167904	60167904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.T99A	0.000	187	0%	112	14.3%	0	-	benign(0.001)	tolerated(0.75)	neutral(0.002)	HMMPfam_CD20
MS4A14	84689	genome.wustl.edu	37	11	60183151	60183151	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.I237N	0.000	481	0%	411	14.8%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MS4A14	84689	genome.wustl.edu	37	11	60183681	60183681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032597.3	+1	validated	p.A414T	0.000	259	0%	207	34.3%	1	0%	benign(0.065)	tolerated(0.28)	neutral(0.036)	NULL
ZP1	22917	genome.wustl.edu	37	11	60638698	60638698	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207341.2	+1	validated	p.G341	0.000	46	0%	19	31.6%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
ZP1	22917	genome.wustl.edu	37	11	60638758	60638758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207341.2	+1	validated	p.Q361H	0.001	29	0%	24	37.5%	0	-	benign(0.015)	tolerated(0.71)	neutral(0.002)	HMMPfam_Zona_pellucida,HMMSmart_ZP
PRPF19	27339	genome.wustl.edu	37	11	60666737	60666737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014502.4	-1	validated	p.I290V	1.000	76	0%	34	20.6%	241	39.4%	benign(0)	tolerated(1)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TMEM109	79073	genome.wustl.edu	37	11	60687314	60687314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024092.2	+1	validated	p.P50Q	0.066	236	0%	84	16.7%	130	44.6%	possibly_damaging(0.898)	deleterious(0.01)	deleterious(0.760)	NULL
TMEM109	79073	genome.wustl.edu	37	11	60689493	60689493	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024092.2	+1	validated	p.Y196	0.996	39	0%	11	45.5%	100	34%	-	-	-	NULL
TMEM132A	54972	genome.wustl.edu	37	11	60703356	60703356	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017870.3	+1	reviewed	p.W684*	1.000	118	0%	65	30.8%	76	39.4%	-	-	-	NULL
VPS37C	55048	genome.wustl.edu	37	11	60901511	60901511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017966.4	-1	validated	p.L88M	1.000	118	0%	51	25.5%	38	34.2%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	HMMPfam_Mod_r
DDB1	1642	genome.wustl.edu	37	11	61069806	61069806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001923.3	-1	validated	p.S1046R	1.000	294	0%	162	27.8%	253	44.2%	benign(0.005)	tolerated(0.08)	neutral(0.300)	HMMPfam_CPSF_A
DDB1	1642	genome.wustl.edu	37	11	61096944	61096944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001923.3	-1	validated	p.R147H	1.000	358	0%	204	28.9%	93	53.7%	possibly_damaging(0.899)	tolerated(0.14)	deleterious(0.605)	NULL
CPSF7	79869	genome.wustl.edu	37	11	61183697	61183697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024811.3	-1	validated	p.P325H	1.000	134	0%	70	32.9%	66	37.8%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
PPP1R32	220004	genome.wustl.edu	37	11	61254449	61254449	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145017.2	+1	validated	p.S288	0.989	281	0.4%	143	32.9%	5	40%	-	-	-	NULL
SYT7	9066	genome.wustl.edu	37	11	61295443	61295443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004200.2	-1	validated	p.T189I	1.000	68	0%	36	22.2%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
DAGLA	747	genome.wustl.edu	37	11	61488266	61488266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006133.1	+1	validated	p.I71V	1.000	44	0%	18	22.2%	0	-	benign(0.048)	tolerated(0.24)	neutral(0.041)	NULL
DAGLA	747	genome.wustl.edu	37	11	61507977	61507977	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006133.1	+1	validated	p.G632	0.039	100	0%	45	11.1%	0	-	-	-	-	NULL
C11orf9	745	genome.wustl.edu	37	11	61551783	61551783	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127392.1	+1	validated	p.S1076C	1.000	33	0%	23	34.8%	4	50%	possibly_damaging(0.75)	deleterious(0.01)	deleterious(0.681)	NULL
INCENP	3619	genome.wustl.edu	37	11	61897802	61897802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040694.1	+1	validated	p.D268G	0.021	95	0%	58	27.6%	17	29.4%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	NULL
INCENP	3619	genome.wustl.edu	37	11	61919403	61919403	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040694.1	+1	validated	p.G904	0.018	82	0%	45	31.1%	15	40%	-	-	-	NULL
SCGB2A1	4246	genome.wustl.edu	37	11	61978062	61978062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002407.2	+1	validated	p.G78E	0.000	397	0%	241	29.5%	193	3.1%	benign(0.075)	tolerated(1)	neutral(0.005)	HMMPfam_Uteroglobin,superfamily_Secretoglobin
ASRGL1	80150	genome.wustl.edu	37	11	62159729	62159729	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083926.1	+1	validated	p.D300	0.000	120	0%	59	16.9%	49	26.5%	-	-	-	HMMPfam_Asparaginase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
AHNAK	79026	genome.wustl.edu	37	11	62286716	62286716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.P5058L	0.447	663	0%	313	24%	171	38.5%	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62289309	62289309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.P4194S	1.000	830	0.1%	454	26%	129	34.8%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62295162	62295162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.M2243V	1.000	895	0%	469	11.3%	41	12.1%	possibly_damaging(0.891)	tolerated(0.47)	neutral(0.361)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62298473	62298473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.L1139H	0.931	302	0%	178	13.5%	13	15.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62301509	62301509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.T127M	0.999	37	0%	22	36.4%	5	0%	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	NULL
EEF1G	1937	genome.wustl.edu	37	11	62338440	62338440	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001404.4	-1	reviewed	p.K173	1.000	584	0%	336	32.1%	3490	36.2%	-	-	-	HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain
MTA2	9219	genome.wustl.edu	37	11	62362756	62362756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004739.2	-1	reviewed	p.A488V	1.000	210	0%	93	22.6%	142	47.8%	benign(0.001)	tolerated(0.51)	neutral(0.009)	NULL
EML3	256364	genome.wustl.edu	37	11	62376884	62376884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153265.2	-1	validated	p.R234C	1.000	68	0%	44	20.5%	18	27.7%	probably_damaging(0.994)	deleterious(0.04)	deleterious(0.801)	HMMPfam_HELP
ROM1	6094	genome.wustl.edu	37	11	62381197	62381197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000327.3	+1	reviewed	p.E148D	1.000	68	0%	31	16.1%	1	0%	possibly_damaging(0.892)	tolerated(1)	neutral(0.351)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
TMEM179B	374395	genome.wustl.edu	37	11	62556810	62556810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199337.2	+1	validated	p.V111I	0.884	116	0%	44	22.7%	205	40.9%	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
TMEM223	79064	genome.wustl.edu	37	11	62558182	62558182	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080501.2	-1	validated	p.R174	0.972	22	0%	17	41.2%	27	48.1%	-	-	-	NULL
NXF1	10482	genome.wustl.edu	37	11	62561828	62561828	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006362.4	-1	reviewed	p.T554	0.636	130	0%	76	10.5%	164	21.3%	-	-	-	superfamily_UBA_like,superfamily_SSF54427
NXF1	10482	genome.wustl.edu	37	11	62569083	62569083	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006362.4	-1	reviewed	p.Y220	0.922	371	0%	190	36.8%	55	40%	-	-	-	superfamily_SSF52058
LOC100287736	100287736	genome.wustl.edu	37	11	63033554	63033554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343091.1	-1	model	p.V59F	0.000	57	0%	36	16.7%	0	-	-	-	-	NULL
SLC22A10	387775	genome.wustl.edu	37	11	63067070	63067070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039752.3	+1	validated	p.R347C	0.007	236	0%	158	27.2%	0	-	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ATL3	25923	genome.wustl.edu	37	11	63410893	63410893	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015459.3	-1	validated	p.C262	0.994	140	0%	86	23.3%	35	48.5%	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
OTUB1	55611	genome.wustl.edu	37	11	63764119	63764119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017670.2	+1	reviewed	p.R113W	1.000	124	0%	49	20.4%	182	20.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases
FLRT1	23769	genome.wustl.edu	37	11	63884476	63884476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013280.4	+1	reviewed	p.R246H	0.997	31	0%	14	28.6%	0	-	probably_damaging(0.999)	tolerated(0.43)	deleterious(0.504)	HMMSmart_SM00369,superfamily_L domain-like
FLRT1	23769	genome.wustl.edu	37	11	63884753	63884753	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013280.4	+1	reviewed	p.W338*	1.000	50	0%	29	31%	1	0%	-	-	-	HMMSmart_SM00082,superfamily_L domain-like
STIP1	10963	genome.wustl.edu	37	11	63961713	63961713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006819.2	+1	validated	p.A91D	1.000	215	0%	132	26.5%	137	47.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
PLCB3	5331	genome.wustl.edu	37	11	64023238	64023238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.R215W	1.000	45	0%	30	16.7%	23	56.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_EF-hand
PRDX5	25824	genome.wustl.edu	37	11	64088167	64088167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012094.3	+1	reviewed	p.A114D	0.789	57	0%	37	29.7%	401	38.9%	benign(0.002)	tolerated(0.45)	neutral(0.012)	superfamily_Thioredoxin-like,HMMPfam_Redoxin
CCDC88B	283234	genome.wustl.edu	37	11	64121210	64121210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032251.5	+1	reviewed	p.R1286H	0.133	247	0%	89	32.6%	4	50%	unknown(0)	-	-	NULL
RPS6KA4	8986	genome.wustl.edu	37	11	64138775	64138775	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003942.2	+1	reviewed	p.R714	0.665	45	0%	25	36%	9	33.3%	-	-	-	NULL
NRXN2	9379	genome.wustl.edu	37	11	64402911	64402911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.Y1139	1.000	23	0%	13	46.2%	5	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
RASGRP2	10235	genome.wustl.edu	37	11	64507577	64507577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098670.1	-1	reviewed	p.R144C	1.000	62	0%	32	18.8%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Ras GEF
PYGM	5837	genome.wustl.edu	37	11	64525752	64525752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005609.2	-1	reviewed	p.G165V	1.000	101	0%	65	26.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Phosphorylase,superfamily_SSF53756
LOC100287827	100287827	genome.wustl.edu	37	11	64622237	64622237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343094.1	+1	model	p.R88S	0.061	158	0%	76	30.3%	46	26%	-	-	-	NULL
CDCA5	113130	genome.wustl.edu	37	11	64850979	64850979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080668.3	-1	validated	p.R62M	1.000	137	0%	62	29%	25	32%	benign(0.113)	deleterious(0.05)	neutral(0.354)	HMMPfam_Sororin
ZFPL1	7542	genome.wustl.edu	37	11	64852657	64852657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006782.3	+1	validated	p.I58T	0.001	113	0%	52	23.1%	71	56.3%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_RING
ZFPL1	7542	genome.wustl.edu	37	11	64854491	64854491	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006782.3	+1	validated	p.G191	0.470	27	0%	13	38.5%	90	38.8%	-	-	-	NULL
SYVN1	84447	genome.wustl.edu	37	11	64899748	64899748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172230.2	-1	reviewed	p.A168T	1.000	112	0%	60	10%	68	5.8%	benign(0.264)	tolerated(0.27)	neutral(0.061)	NULL
TIGD3	220359	genome.wustl.edu	37	11	65124096	65124096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145719.2	+1	reviewed	p.L273M	0.002	37	0%	14	64.3%	1	0%	benign(0.068)	tolerated(0.24)	neutral(0.042)	NULL
RELA	5970	genome.wustl.edu	37	11	65423203	65423203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021975.3	-1	validated	p.R330H	1.000	104	0%	61	13.1%	416	7.9%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
MUS81	80198	genome.wustl.edu	37	11	65631351	65631351	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025128.4	+1	validated	p.D346	0.886	55	0%	22	22.7%	35	40%	-	-	-	HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core
SART1	9092	genome.wustl.edu	37	11	65746326	65746326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005146.4	+1	reviewed	p.K775N	1.000	74	0%	31	45.2%	47	38.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CATSPER1	117144	genome.wustl.edu	37	11	65784545	65784545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.D768N	0.195	34	0%	20	35%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KLC2	64837	genome.wustl.edu	37	11	66031154	66031154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134775.1	+1	validated	p.A259D	1.000	175	0%	66	33.3%	44	31.8%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_TPR_1,PatternScan_KINESIN_LIGHT,HMMSmart_TPR,superfamily_SSF48452
RAB1B	81876	genome.wustl.edu	37	11	66043384	66043384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030981.2	+1	validated	p.V130A	1.000	23	0.000	7	0.571	241	31.5%	unknown(0)	tolerated(0.06)	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMSmart_SM00177,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNIH2	254263	genome.wustl.edu	37	11	66050743	66050743	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182553.1	+1	provisional	p.G112	1.000	70	0%	29	13.8%	4	0%	-	-	-	HMMPfam_Cornichon
RIN1	9610	genome.wustl.edu	37	11	66100858	66100858	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004292.2	-1	validated	p.L582	0.169	18	0.000	9	0.556	6	50%	-	-	-	HMMPfam_VPS9,HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204)
NPAS4	266743	genome.wustl.edu	37	11	66192548	66192548	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178864.3	+1	validated	p.G729	0.962	107	0%	53	26.4%	0	-	-	-	-	NULL
BBS1	582	genome.wustl.edu	37	11	66294216	66294216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024649.4	+1	reviewed	p.N426I	0.988	267	0%	102	21.6%	24	29.1%	possibly_damaging(0.933)	deleterious(0.03)	deleterious(0.744)	NULL
ACTN3	89	genome.wustl.edu	37	11	66323693	66323693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104.1	+1	reviewed	p.A266T	1.000	213	0%	109	29.4%	0	-	benign(0.155)	tolerated(0.07)	neutral(0.333)	superfamily_Calponin-homology domain CH-domain
ACTN3	89	genome.wustl.edu	37	11	66328120	66328120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104.1	+1	reviewed	p.I585T	1.000	79	0%	40	25%	0	-	possibly_damaging(0.836)	deleterious(0.01)	deleterious(0.725)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CTSF	8722	genome.wustl.edu	37	11	66333158	66333158	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003793.3	-1	reviewed	p.S343	0.000	136	0%	53	26.4%	53	26.4%	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
CCDC87	55231	genome.wustl.edu	37	11	66359310	66359310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018219.2	-1	validated	p.H393Y	0.000	64	0%	24	37.5%	0	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
CCDC87	55231	genome.wustl.edu	37	11	66359431	66359431	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018219.2	-1	validated	p.I352	0.000	64	0%	35	25.7%	2	0%	-	-	-	NULL
RBM14	10432	genome.wustl.edu	37	11	66392887	66392887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006328.3	+1	validated	p.A514T	1.000	76	0%	53	34%	66	34.8%	unknown(0)	deleterious(0.02)	-	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66460189	66460189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.A1670T	1.000	145	0%	50	20%	18	50%	possibly_damaging(0.675)	deleterious(0.04)	deleterious(0.589)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN2	6712	genome.wustl.edu	37	11	66469143	66469143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.A910T	0.964	107	0%	52	36.5%	12	41.6%	benign(0.002)	tolerated(0.65)	neutral(0.003)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PC	5091	genome.wustl.edu	37	11	66617721	66617721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.E896D	1.000	57	0%	38	39.5%	11	54.5%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_PYC_OADA,superfamily_SSF89000
SYT12	91683	genome.wustl.edu	37	11	66812121	66812121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177963.3	+1	reviewed	p.R299C	1.000	32	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2,superfamily_C2_CaLB
KDM2A	22992	genome.wustl.edu	37	11	66947569	66947569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012308.2	+1	reviewed	p.R21H	1.000	134	0%	87	34.5%	12	66.6%	benign(0.229)	tolerated(0.16)	neutral(0.082)	NULL
SSH3	54961	genome.wustl.edu	37	11	67077318	67077318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017857.3	+1	validated	p.K430E	1.000	45	0%	27	22.2%	18	16.6%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
CLCF1	23529	genome.wustl.edu	37	11	67132735	67132735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013246.2	-1	reviewed	p.D184N	0.997	41	0%	22	18.2%	8	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	superfamily_4_helix_cytokine,HMMPfam_PRF
GSTP1	2950	genome.wustl.edu	37	11	67352640	67352640	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398606	+1	known	p.A88	0.400	24	0%	14	50%	844	32.3%	-	-	-	superfamily_GST_C_like
TBX10	347853	genome.wustl.edu	37	11	67400498	67400498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005995.3	-1	provisional	p.R209H	1.000	109	0%	79	31.6%	1	100%	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
ACY3	91703	genome.wustl.edu	37	11	67413233	67413233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080658.1	-1	validated	p.N121S	1.000	36	2.8%	12	50%	7	14.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_AstE_AspA
CHKA	1119	genome.wustl.edu	37	11	67842271	67842271	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.S181	0.994	130	0%	79	36.7%	21	38%	-	-	-	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
SUV420H1	51111	genome.wustl.edu	37	11	67953362	67953362	+	Missense_Mutation	SNP	C	C	T	rs188627113	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017635.3	-1	reviewed	p.R65H	1.000	248	0%	129	27.1%	31	35.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C11orf24	53838	genome.wustl.edu	37	11	68029247	68029247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022338.3	-1	validated	p.L406M	1.000	62	0%	25	40%	55	34.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRP5	4041	genome.wustl.edu	37	11	68157419	68157419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002335.2	+1	reviewed	p.R495C	0.206	77	0%	34	23.5%	18	44.4%	possibly_damaging(0.732)	tolerated(0.14)	deleterious(0.517)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
MTL5	9633	genome.wustl.edu	37	11	68475877	68475877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004923.3	-1	reviewed	p.S476P	0.886	192	0%	112	20.5%	14	42.8%	possibly_damaging(0.525)	tolerated(0.07)	deleterious(0.496)	NULL
CPT1A	1374	genome.wustl.edu	37	11	68579905	68579905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001876.3	-1	reviewed	p.A94V	0.984	226	0%	93	29%	22	36.3%	benign(0.011)	tolerated(0.5)	neutral(0.011)	NULL
IGHMBP2	3508	genome.wustl.edu	37	11	68675700	68675700	+	Missense_Mutation	SNP	C	C	T	rs181657861	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002180.2	+1	reviewed	p.T115M	0.257	223	0%	93	23.7%	5	0%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	NULL
ANO1	55107	genome.wustl.edu	37	11	70007755	70007755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018043.5	+1	validated	p.E603G	1.000	114	0%	49	16.3%	164	51.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR7E87P	8586	genome.wustl.edu	37	11	71304708	71304708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329336	+1	known	p.A94D	0.228	73	0%	32	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LOC100131539	100131539	genome.wustl.edu	37	11	71527737	71527738	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001723234.2	-1	model	p.N241fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NUMA1	4926	genome.wustl.edu	37	11	71725779	71725779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.R924C	0.992	87	0%	36	13.9%	113	22.1%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ENSG00000251143	0	genome.wustl.edu	37	11	71727738	71727738	+	RNA	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502284	+1	known	NULL	0.000	34	0%	25	28%	0	-	-	-	-	-
FOLR2	2350	genome.wustl.edu	37	11	71927946	71927946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000321324	+1	known	p.L2I	0.001	84	0%	43	14%	3	0%	possibly_damaging(0.615)	deleterious(0)	deleterious(0.658)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71943739	71943739	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.D594	1.000	91	0%	38	23.7%	117	47%	-	-	-	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
CLPB	81570	genome.wustl.edu	37	11	72013351	72013351	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030813.3	-1	provisional	p.H418	0.834	178	0%	84	28.6%	26	53.8%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLPB	81570	genome.wustl.edu	37	11	72114097	72114097	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030813.3	-1	provisional	e3-1	0.997	247	0%	143	31.5%	9	100%	-	-	-	-
P2RY6	5031	genome.wustl.edu	37	11	73007611	73007611	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004154.3	+1	reviewed	p.T16	0.046	219	0%	105	24.8%	2	0%	-	-	-	superfamily_SSF81321
P2RY6	5031	genome.wustl.edu	37	11	73008084	73008084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004154.3	+1	reviewed	p.R174H	1.000	86	0%	36	25%	6	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_7tm_1,superfamily_SSF81321
ARHGEF17	9828	genome.wustl.edu	37	11	73021152	73021152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.P490H	0.000	47	0%	29	31%	6	33.3%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
RNF169	254225	genome.wustl.edu	37	11	74547321	74547321	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098638.1	+1	validated	p.K558M	0.004	217	0%	137	25.5%	8	50%	possibly_damaging(0.716)	tolerated(0.06)	deleterious(0.582)	NULL
UVRAG	7405	genome.wustl.edu	37	11	75590931	75590931	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.T93	0.033	792	0.1%	424	30%	1	0%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
UVRAG	7405	genome.wustl.edu	37	11	75852336	75852336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.A660D	1.000	93	0%	29	24.1%	8	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKRIR	5612	genome.wustl.edu	37	11	76063044	76063044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004705.2	-1	provisional	p.I384V	0.992	395	0%	253	17.4%	36	36.1%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
TSKU	25987	genome.wustl.edu	37	11	76507209	76507209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015516.3	+1	validated	p.A183	0.000	79	0%	43	32.6%	467	44.1%	-	-	-	superfamily_SSF52047
ACER3	55331	genome.wustl.edu	37	11	76637712	76637712	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018367.5	+1	validated	e2+1	1.000	204	0%	181	40.9%	0	-	-	-	-	-
KCTD14	65987	genome.wustl.edu	37	11	77727937	77727937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023930.3	-1	validated	p.R157H	0.070	160	0%	108	19.4%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ALG8	79053	genome.wustl.edu	37	11	77820569	77820569	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024079.4	-1	reviewed	p.G319	0.991	265	0%	137	19.7%	79	45.5%	unknown(0)	-	-	HMMPfam_Alg6_Alg8
GAB2	9846	genome.wustl.edu	37	11	77937596	77937596	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.P374	0.000	135	0%	67	22.4%	7	42.8%	-	-	-	NULL
GAB2	9846	genome.wustl.edu	37	11	77937700	77937700	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.T340S	0.799	101	0%	56	23.2%	7	28.5%	benign(0.011)	tolerated(0.72)	neutral(0.002)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78380111	78380111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R2427C	1.000	75	0%	40	22.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78380498	78380498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R2298W	0.953	124	0%	48	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RHS_repeat
PCF11	51585	genome.wustl.edu	37	11	82874869	82874869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015885.3	+1	validated	p.T156M	1.000	79	0%	61	13.1%	3	0%	probably_damaging(0.954)	tolerated(0.1)	deleterious(0.684)	NULL
PCF11	51585	genome.wustl.edu	37	11	82882913	82882913	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015885.3	+1	validated	p.L1238	1.000	202	0%	135	25.9%	14	35.7%	-	-	-	NULL
DLG2	1740	genome.wustl.edu	37	11	83770367	83770367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142699.1	-1	reviewed	p.G304C	1.000	388	0%	284	26.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,superfamily_PDZ domain-like
SYTL2	54843	genome.wustl.edu	37	11	85418560	85418560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206927.2	-1	reviewed	p.Y1010C	1.000	480	0%	298	26.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SYTL2	54843	genome.wustl.edu	37	11	85445167	85445167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032943.3	-1	reviewed	p.V401A	0.000	444	0%	239	31.8%	1	0%	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
CCDC81	60494	genome.wustl.edu	37	11	86131053	86131053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021827.4	+1	validated	p.A502V	0.000	175	0%	87	13.8%	1	0%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
ME3	10873	genome.wustl.edu	37	11	86152451	86152451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014811.1	-1	reviewed	p.A562D	1.000	259	0%	149	25.5%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_NAD(P)-bd
PRSS23	11098	genome.wustl.edu	37	11	86519563	86519563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007173.4	+1	validated	p.R293H	1.000	150	0.7%	87	27.6%	55	23.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Trypsin-like serine proteases
GRM5	2915	genome.wustl.edu	37	11	88301097	88301097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.V585A	1.000	99	0%	61	32.8%	0	-	benign(0.309)	tolerated(0.44)	neutral(0.109)	HMMPfam_7tm_3
GRM5	2915	genome.wustl.edu	37	11	88780469	88780469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.V191A	0.999	191	0%	107	19.6%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
GRM5	2915	genome.wustl.edu	37	11	88781019	88781019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.S8P	1.000	93	0%	54	20.4%	0	-	unknown(0)	tolerated(0.37)	-	NULL
FOLH1B	219595	genome.wustl.edu	37	11	89424315	89424315	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153696.2	+1	provisional	e9+1	1.000	337	0%	229	34.9%	0	-	-	-	-	-
ENSG00000234376	0	genome.wustl.edu	37	11	89486968	89486968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411859	-1	known	p.C56Y	0.990	383	0%	290	19.7%	0	-	-	-	-	NULL
LOC653111	653111	genome.wustl.edu	37	11	89768707	89768707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_926073.2	+1	model	p.L110M	0.144	186	0%	111	12.6%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-B_box,HMMSmart_SM00336
ENSG00000214391	0	genome.wustl.edu	37	11	90016350	90016350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000318973	+1	known	p.Q175H	1.000	501	0.2%	321	28.7%	121	0%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
FAT3	120114	genome.wustl.edu	37	11	92086977	92086977	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.R567*	0.109	173	0%	153	26.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92088308	92088308	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.V1010	0.985	139	0%	102	13.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532208	92532208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.R2010H	1.000	374	0%	262	28.2%	0	-	benign(0.026)	tolerated(0.67)	neutral(0.004)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92532623	92532623	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.D2148	0.997	90	0%	53	34%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92539627	92539627	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.R3065*	1.000	31	0%	26	26.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
HEPHL1	341208	genome.wustl.edu	37	11	93844921	93844921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098672.1	+1	validated	p.A1114V	1.000	604	0.2%	388	10.8%	0	-	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	NULL
PIWIL4	143689	genome.wustl.edu	37	11	94341805	94341805	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152431.2	+1	validated	p.D632	0.000	595	0%	405	25.4%	1	0%	-	-	-	HMMPfam_Piwi,superfamily_Ribonuclease H-like
KDM4D	55693	genome.wustl.edu	37	11	94731711	94731711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018039.2	+1	validated	p.R392H	0.000	105	1%	69	29%	2	50%	possibly_damaging(0.554)	tolerated(0.09)	deleterious(0.485)	NULL
CEP57	9702	genome.wustl.edu	37	11	95555716	95555716	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014679.3	+1	validated	p.G287	0.983	178	0%	99	20.2%	52	40.3%	-	-	-	HMMPfam_DUF1167
CCDC82	79780	genome.wustl.edu	37	11	96098144	96098144	+	Missense_Mutation	SNP	C	C	A	rs143571415	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024725.3	-1	validated	p.Q460H	1.000	187	0%	121	19.8%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CCDC82	79780	genome.wustl.edu	37	11	96117177	96117177	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024725.3	-1	validated	p.E245	0.989	288	0%	218	11.5%	3	0%	-	-	-	NULL
CNTN5	53942	genome.wustl.edu	37	11	99827719	99827719	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.T285	0.572	123	0%	96	28.1%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CNTN5	53942	genome.wustl.edu	37	11	100170108	100170108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014361.2	+1	reviewed	p.V867A	1.000	259	0%	186	30.6%	0	-	benign(0.111)	deleterious(0.01)	neutral(0.414)	superfamily_Fibronectin type III
TRPC6	7225	genome.wustl.edu	37	11	101342014	101342014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004621.5	-1	reviewed	p.P770Q	1.000	381	0%	290	29%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
YAP1	10413	genome.wustl.edu	37	11	102098228	102098228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130145.1	+1	reviewed	p.T398A	1.000	159	0%	103	29.1%	90	35.5%	probably_damaging(0.987)	tolerated(0.36)	neutral(0.457)	NULL
MMP20	9313	genome.wustl.edu	37	11	102487788	102487788	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004771.3	-1	reviewed	p.A43	0.005	127	0%	77	27.3%	0	-	-	-	-	HMMPfam_PG_binding_1,superfamily_PGBD-like
MMP3	4314	genome.wustl.edu	37	11	102706888	102706888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.T468I	0.000	233	0%	167	41.3%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP13	4322	genome.wustl.edu	37	11	102826141	102826141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002427.3	-1	reviewed	p.L68I	1.000	527	0%	336	34.5%	0	-	possibly_damaging(0.754)	tolerated(0.7)	neutral(0.280)	HMMPfam_PG_binding_1,superfamily_PGBD_like
DYNC2H1	79659	genome.wustl.edu	37	11	102980357	102980357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.Q18H	0.977	61	0%	28	21.4%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
PDGFD	80310	genome.wustl.edu	37	11	103797744	103797744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025208.4	-1	reviewed	p.R295C	1.000	120	0%	89	27%	6	83.3%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_PDGF,superfamily_Cystine-knot cytokines
CASP5	838	genome.wustl.edu	37	11	104871208	104871208	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136112.1	-1	reviewed	p.V257	0.000	334	0%	211	29.4%	0	-	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
CASP5	838	genome.wustl.edu	37	11	104874092	104874092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136112.1	-1	reviewed	p.A164V	0.000	269	0%	160	30%	0	-	possibly_damaging(0.952)	tolerated(0.13)	deleterious(0.648)	NULL
CARD17	440068	genome.wustl.edu	37	11	104971460	104971460	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007232.1	-1	provisional	p.G18	0.000	1131	0%	924	26.6%	0	-	-	-	-	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like
GRIA4	2893	genome.wustl.edu	37	11	105836687	105836687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077243.2	+1	reviewed	p.L770F	1.000	120	0%	71	21.1%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GUCY1A2	2977	genome.wustl.edu	37	11	106558424	106558424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000855.1	-1	validated	p.D684Y	1.000	412	0%	284	29.2%	1	0%	probably_damaging(0.989)	deleterious(0.04)	deleterious(0.788)	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GUCY1A2	2977	genome.wustl.edu	37	11	106849418	106849418	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000855.1	-1	validated	p.S138	1.000	238	0%	173	13.9%	2	0%	-	-	-	HMMPfam_HNOB
CWF19L2	143884	genome.wustl.edu	37	11	107197780	107197780	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	e18-1	1.000	596	0%	381	13.4%	0	-	-	-	-	-
CWF19L2	143884	genome.wustl.edu	37	11	107309826	107309826	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	p.S218	0.844	103	0%	47	29.8%	3	0%	-	-	-	NULL
SLC35F2	54733	genome.wustl.edu	37	11	107663427	107663427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017515.4	-1	validated	p.V347M	0.649	76	0%	42	45.2%	50	58%	benign(0.003)	tolerated(0.05)	neutral(0.345)	HMMPfam_DUF914
CUL5	8065	genome.wustl.edu	37	11	107960288	107960288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003478.3	+1	validated	p.R461C	1.000	190	0%	106	23.6%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
ATM	472	genome.wustl.edu	37	11	108126973	108126973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.S719*	0.944	170	0%	114	36.8%	4	25%	-	-	-	superfamily_ARM repeat
ATM	472	genome.wustl.edu	37	11	108172483	108172483	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.A1762	0.623	244	0%	155	29%	4	75%	-	-	-	superfamily_ARM repeat
C11orf65	160140	genome.wustl.edu	37	11	108276267	108276267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152587.3	-1	validated	p.G150D	0.000	271	0%	162	30.9%	0	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	NULL
DDX10	1662	genome.wustl.edu	37	11	108594090	108594090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004398.2	+1	reviewed	p.Q622H	0.972	402	0%	280	30.4%	24	45.8%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
POU2AF1	5450	genome.wustl.edu	37	11	111229608	111229608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006235.2	-1	validated	p.P18S	1.000	53	0%	31	29%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PD-C2-AF1
BTG4	54766	genome.wustl.edu	37	11	111365926	111365926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017589.2	-1	reviewed	p.H208Q	0.000	338	0%	207	25.1%	0	-	benign(0.014)	tolerated(0.18)	neutral(0.057)	NULL
LOC728196	728196	genome.wustl.edu	37	11	111383991	111383991	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040780.2	+1	model	NULL	0.056	22	0%	10	60%	0	-	-	-	-	-
LOC728196	728196	genome.wustl.edu	37	11	111384090	111384090	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040780.2	+1	model	NULL	0.000	43	0%	21	57.1%	0	-	-	-	-	-
LAYN	143903	genome.wustl.edu	37	11	111420416	111420416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178834.3	+1	provisional	p.A153T	0.021	174	0%	83	28.9%	2	0%	benign(0.245)	tolerated(0.11)	neutral(0.297)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
DLAT	1737	genome.wustl.edu	37	11	111899602	111899602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001931.4	+1	reviewed	p.A198D	1.000	247	0.4%	144	22.9%	63	42.8%	possibly_damaging(0.895)	tolerated(0.13)	deleterious(0.605)	NULL
TTC12	54970	genome.wustl.edu	37	11	113234589	113234589	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017868.3	+1	validated	p.L586	0.280	262	0.4%	128	21.1%	8	87.5%	-	-	-	superfamily_ARM-type_fold
ANKK1	255239	genome.wustl.edu	37	11	113264368	113264368	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178510.1	+1	reviewed	p.W117*	1.000	162	0%	59	40.7%	0	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
DRD2	1813	genome.wustl.edu	37	11	113283547	113283547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000795.3	-1	reviewed	p.P290L	0.986	34	0%	19	36.8%	0	-	benign(0.057)	tolerated(0.12)	neutral(0.264)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
USP28	57646	genome.wustl.edu	37	11	113675639	113675639	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020886.2	-1	validated	p.R844*	0.999	200	0%	93	14%	4	75%	-	-	-	NULL
HTR3A	3359	genome.wustl.edu	37	11	113857689	113857689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213621.3	+1	reviewed	p.W385C	0.153	98	0%	57	26.3%	0	-	benign(0.006)	tolerated(0.19)	neutral(0.050)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
NNMT	4837	genome.wustl.edu	37	11	114167411	114167411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006169.2	+1	reviewed	p.L45I	0.548	310	0%	180	23.9%	6	0%	benign(0.02)	deleterious(0.05)	neutral(0.346)	HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NNMT	4837	genome.wustl.edu	37	11	114182820	114182820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006169.2	+1	reviewed	p.L139P	0.995	96	0%	49	36.7%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NNMT_PNMT_TEMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
FAM55D	54827	genome.wustl.edu	37	11	114451048	114451048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077639.1	-1	validated	p.A302V	0.000	310	1%	245	23.7%	2	0%	benign(0.018)	tolerated(0.28)	neutral(0.032)	NULL
SIDT2	51092	genome.wustl.edu	37	11	117059507	117059507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040455.1	+1	validated	p.D415N	1.000	188	0%	126	16.7%	21	42.8%	possibly_damaging(0.748)	deleterious(0.01)	deleterious(0.680)	NULL
RNF214	257160	genome.wustl.edu	37	11	117153161	117153161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077239.1	+1	validated	p.R585H	1.000	263	0%	151	23.8%	21	33.3%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
CEP164	22897	genome.wustl.edu	37	11	117279734	117279734	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014956.4	+1	validated	p.R1246	0.001	109	0%	41	36.6%	4	75%	-	-	-	NULL
TMPRSS13	84000	genome.wustl.edu	37	11	117774354	117774354	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445164	-1	known	p.Q564*	0.000	105	0%	45	44.4%	0	-	-	-	-	NULL
MPZL3	196264	genome.wustl.edu	37	11	118104192	118104192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198275.1	-1	provisional	p.R222C	0.625	246	0%	135	23%	4	25%	benign(0.165)	deleterious(0)	neutral(0.460)	NULL
CD3D	915	genome.wustl.edu	37	11	118209900	118209900	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000732.4	-1	reviewed	p.G165*	0.991	280	0.4%	158	11.4%	13	0%	-	-	-	HMMPfam_ITAM,HMMSmart_SM00077
UBE4A	9354	genome.wustl.edu	37	11	118250357	118250357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004788.2	+1	reviewed	p.S597T	1.000	290	0%	206	29.6%	34	50%	possibly_damaging(0.902)	tolerated(0.31)	neutral(0.384)	HMMPfam_Ufd2P_core
MLL	4297	genome.wustl.edu	37	11	118342612	118342612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.K246N	1.000	478	0%	328	28.7%	3	100%	probably_damaging(0.98)	tolerated(0.2)	deleterious(0.473)	NULL
MLL	4297	genome.wustl.edu	37	11	118347553	118347553	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.R1064*	0.995	236	0%	181	24.3%	4	25%	-	-	-	NULL
MLL	4297	genome.wustl.edu	37	11	118348864	118348864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.C1173R	1.000	474	0%	247	29.1%	5	0%	possibly_damaging(0.922)	-	-	HMMPfam_zf-CXXC
TMEM25	84866	genome.wustl.edu	37	11	118404152	118404152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032780.3	+1	validated	p.V231M	1.000	84	0%	35	14.3%	8	62.5%	possibly_damaging(0.774)	deleterious(0.01)	deleterious(0.694)	NULL
ARCN1	372	genome.wustl.edu	37	11	118452208	118452208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001655.4	+1	reviewed	p.R84M	0.685	192	0%	116	31.9%	106	39.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SNARE-like
PHLDB1	23187	genome.wustl.edu	37	11	118502021	118502021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144758.1	+1	validated	p.A642D	0.964	164	0%	107	33.6%	10	40%	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	NULL
DDX6	1656	genome.wustl.edu	37	11	118629570	118629570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004397.4	-1	reviewed	p.E302D	1.000	209	0%	140	25.7%	55	47.2%	benign(0)	tolerated(1)	-	HMMSmart_DEXDc,superfamily_SSF52540
DDX6	1656	genome.wustl.edu	37	11	118635987	118635987	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004397.4	-1	reviewed	p.G192	1.000	974	0%	589	26.3%	31	38.7%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
BCL9L	283149	genome.wustl.edu	37	11	118771496	118771496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182557.2	-1	validated	p.R986C	1.000	61	0%	32	37.5%	34	35.2%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	NULL
BCL9L	283149	genome.wustl.edu	37	11	118772950	118772950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182557.2	-1	validated	p.M501T	1.000	59	0%	22	22.7%	3	66.6%	possibly_damaging(0.794)	deleterious(0.01)	deleterious(0.704)	NULL
SLC37A4	2542	genome.wustl.edu	37	11	118895724	118895724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000330775	-1	known	p.A417S	1.000	69	0%	49	22.4%	38	28.9%	unknown(0)	-	-	superfamily_MFS general substrate transporter
SLC37A4	2542	genome.wustl.edu	37	11	118899937	118899937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000330775	-1	known	p.D48G	1.000	65	0%	31	45.2%	23	26%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
HYOU1	10525	genome.wustl.edu	37	11	118925353	118925353	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130991.1	-1	reviewed	p.P177	0.994	63	0%	30	20%	113	13.2%	-	-	-	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
VPS11	55823	genome.wustl.edu	37	11	118949413	118949413	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.L687	1.000	61	1.6%	26	42.3%	81	33.3%	-	-	-	NULL
VPS11	55823	genome.wustl.edu	37	11	118949623	118949623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.A727T	1.000	67	0%	43	37.2%	49	48.9%	-	-	-	NULL
VPS11	55823	genome.wustl.edu	37	11	118951995	118951995	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.R877*	1.000	164	0%	88	12.5%	64	18.7%	-	-	-	NULL
C2CD2L	9854	genome.wustl.edu	37	11	118986849	118986849	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014807.3	+1	validated	p.N669	0.994	65	0%	36	13.9%	25	36%	-	-	-	NULL
PDZD3	79849	genome.wustl.edu	37	11	119059353	119059353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024791.3	+1	validated	p.R341H	1.000	78	0%	39	17.9%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	superfamily_PDZ
MCAM	4162	genome.wustl.edu	37	11	119182085	119182085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006500.2	-1	validated	p.N485S	0.040	77	0%	32	28.1%	19	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PVRL1	5818	genome.wustl.edu	37	11	119549197	119549197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.G120C	1.000	177	0%	89	12.4%	18	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PVRL1	5818	genome.wustl.edu	37	11	119549269	119549269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.R96C	1.000	95	0%	46	28.3%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ARHGEF12	23365	genome.wustl.edu	37	11	120347455	120347455	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.T1121	0.350	192	0%	125	20.8%	27	18.5%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
ARHGEF12	23365	genome.wustl.edu	37	11	120347456	120347456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.V1122I	0.995	187	0%	123	20.3%	27	18.5%	benign(0.019)	tolerated(0.36)	neutral(0.021)	HMMSmart_SM00233,superfamily_PH domain-like
TBCEL	219899	genome.wustl.edu	37	11	120929158	120929158	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130047.1	+1	validated	p.R273*	1.000	425	0%	246	22.8%	11	18.1%	-	-	-	superfamily_SSF52047
SC5DL	6309	genome.wustl.edu	37	11	121174242	121174242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024956.2	+1	reviewed	p.S53I	1.000	230	0%	108	25.9%	36	58.3%	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	NULL
SORL1	6653	genome.wustl.edu	37	11	121477970	121477970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.L1713I	0.990	122	0.8%	63	31.7%	9	55.5%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BLID	414899	genome.wustl.edu	37	11	121986489	121986489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001786.2	-1	reviewed	p.E48K	0.000	347	0%	183	13.7%	0	-	unknown(0)	-	-	NULL
UBASH3B	84959	genome.wustl.edu	37	11	122650305	122650305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032873.4	+1	validated	p.T168M	1.000	192	0%	100	26%	4	0%	possibly_damaging(0.762)	tolerated(0.17)	neutral(0.341)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122756567	122756567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024806.2	+1	validated	p.R4C	0.000	180	0%	112	25%	4	25%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
C11orf63	79864	genome.wustl.edu	37	11	122817429	122817429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024806.2	+1	validated	p.R620C	0.646	172	0%	137	14.6%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HSPA8	3312	genome.wustl.edu	37	11	122929826	122929826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006597.3	-1	reviewed	p.T422A	1.000	116	0%	65	32.3%	2343	39.9%	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
CLMP	79827	genome.wustl.edu	37	11	122954464	122954464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024769.2	-1	validated	p.E160D	0.964	194	0%	119	11.8%	3	0%	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
GRAMD1B	57476	genome.wustl.edu	37	11	123484347	123484347	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020716.1	+1	validated	p.H593	0.998	109	0%	55	21.8%	1	0%	-	-	-	NULL
SCN3B	55800	genome.wustl.edu	37	11	123524469	123524469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040151.1	-1	reviewed	p.V14A	0.995	590	0%	347	26.2%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
ZNF202	7753	genome.wustl.edu	37	11	123598932	123598932	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003455.2	-1	validated	p.S247	0.999	388	0%	231	32.9%	7	28.5%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF202	7753	genome.wustl.edu	37	11	123600369	123600369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003455.2	-1	validated	p.E189D	0.998	88	0%	45	20%	3	33.3%	benign(0.366)	tolerated(0.65)	neutral(0.120)	NULL
OR6M1	390261	genome.wustl.edu	37	11	123676574	123676574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005325.1	-1	provisional	p.T162A	0.000	233	0%	190	25.3%	0	-	benign(0.002)	tolerated(0.34)	neutral(0.023)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D4	338662	genome.wustl.edu	37	11	123777848	123777848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005197.1	+1	provisional	p.A237V	1.000	327	0%	284	23.9%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D5	219875	genome.wustl.edu	37	11	123810893	123810893	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001965.1	+1	provisional	p.T190	0.785	396	0%	227	26.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D5	219875	genome.wustl.edu	37	11	123811088	123811088	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001965.1	+1	provisional	p.I255	0.596	470	0%	250	21.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4D5	219875	genome.wustl.edu	37	11	123811214	123811214	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001965.1	+1	provisional	p.A297	0.976	348	0%	176	30.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR6T1	219874	genome.wustl.edu	37	11	123814056	123814056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005187.1	-1	provisional	p.A164T	0.001	121	0%	72	31.9%	0	-	benign(0.017)	tolerated(0.23)	neutral(0.042)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000226461	0	genome.wustl.edu	37	11	123880583	123880583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430459	+1	known	p.V72L	0.475	157	0%	98	20.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR10G4	390264	genome.wustl.edu	37	11	123886823	123886823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004462.1	+1	provisional	p.P181L	0.009	644	0%	413	26.2%	0	-	probably_damaging(0.987)	tolerated(0.15)	deleterious(0.677)	HMMPfam_7tm_1,superfamily_SSF81321
OR10G8	219869	genome.wustl.edu	37	11	123900551	123900551	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004464.1	+1	provisional	p.V74	0.955	637	0%	408	27.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
VWA5A	4013	genome.wustl.edu	37	11	124005737	124005737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130142.1	+1	validated	p.S452F	1.000	122	0%	77	37.7%	9	77.7%	benign(0.004)	tolerated(0.12)	neutral(0.261)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWA5A	4013	genome.wustl.edu	37	11	124012396	124012396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130142.1	+1	validated	p.M657I	0.000	439	0%	272	27.2%	4	100%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
OR8D1	283159	genome.wustl.edu	37	11	124179992	124179992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002917.1	-1	provisional	p.S224I	0.000	174	0%	183	27.3%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR8D1	283159	genome.wustl.edu	37	11	124180345	124180345	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002917.1	-1	provisional	p.V106	0.023	275	0%	188	19.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PANX3	116337	genome.wustl.edu	37	11	124489317	124489317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052959.2	+1	reviewed	p.A222V	0.569	157	0%	96	33.3%	0	-	possibly_damaging(0.897)	tolerated(1)	neutral(0.354)	NULL
TBRG1	84897	genome.wustl.edu	37	11	124495793	124495793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032811.2	+1	validated	p.L150M	1.000	37	0%	25	24%	19	36.8%	benign(0)	tolerated(0.17)	neutral(0.059)	NULL
SIAE	54414	genome.wustl.edu	37	11	124524594	124524594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170601.3	-1	validated	p.E167D	1.000	1204	0.1%	653	12.7%	37	13.5%	benign(0)	tolerated(0.63)	neutral(0.004)	NULL
VSIG2	23584	genome.wustl.edu	37	11	124621404	124621404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014312.3	-1	provisional	p.C45Y	1.000	99	0%	52	26.9%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124739922	124739922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022370.3	+1	reviewed	p.A242T	1.000	101	0%	49	28.6%	0	-	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124739941	124739941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022370.3	+1	reviewed	p.A248V	0.989	74	0%	48	31.2%	0	-	benign(0.064)	tolerated(0.21)	neutral(0.048)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ROBO3	64221	genome.wustl.edu	37	11	124740079	124740079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022370.3	+1	reviewed	p.R262H	0.894	210	0%	110	33.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_I-set,superfamily_Immunoglobulin
HEPACAM	220296	genome.wustl.edu	37	11	124793862	124793862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152722.4	-1	validated	p.L158	1.000	55	0%	33	27.3%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
PKNOX2	63876	genome.wustl.edu	37	11	125301195	125301195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022062.2	+1	validated	p.E442D	1.000	64	0%	41	34.1%	0	-	benign(0.037)	tolerated(0.99)	neutral(0.002)	NULL
FEZ1	9638	genome.wustl.edu	37	11	125359382	125359382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005103.3	-1	reviewed	p.E98K	1.000	196	0%	114	30.7%	0	-	possibly_damaging(0.773)	deleterious(0.02)	deleterious(0.670)	HMMPfam_FEZ
PUS3	83480	genome.wustl.edu	37	11	125765461	125765461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031307.3	-1	validated	p.R201H	1.000	113	0%	69	24.6%	20	45%	benign(0.054)	tolerated(0.06)	neutral(0.326)	superfamily_PsdUridine_synth_cat_dom
PUS3	83480	genome.wustl.edu	37	11	125765665	125765665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031307.3	-1	validated	p.R133H	1.000	283	0%	171	13.5%	23	17.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PseudoU_synth_1,superfamily_PsdUridine_synth_cat_dom
RPUSD4	84881	genome.wustl.edu	37	11	126075478	126075478	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032795.2	-1	validated	p.D227	0.493	115	0%	68	36.8%	30	50%	-	-	-	HMMPfam_PseudoU_synth_2,superfamily_PsdUridine_synth_cat_dom
DCPS	28960	genome.wustl.edu	37	11	126176565	126176565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014026.3	+1	validated	p.S101N	0.959	65	0%	43	39.5%	37	43.2%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_DcpS,superfamily_Scavenger_mRNA_decap_enz_N
DCPS	28960	genome.wustl.edu	37	11	126215338	126215338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014026.3	+1	validated	p.A282T	0.983	80	0%	46	39.1%	65	44.6%	possibly_damaging(0.8)	tolerated(0.38)	neutral(0.319)	HMMPfam_DcpS,superfamily_His_triad-like_motif,PatternScan_HIT_1
ST3GAL4	6484	genome.wustl.edu	37	11	126276443	126276443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000239597	+1	known	p.Y12C	0.959	126	0.8%	83	25.3%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ST3GAL4	6484	genome.wustl.edu	37	11	126278058	126278058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006278.1	+1	provisional	p.D132Y	0.292	83	1.2%	28	25%	12	50%	benign(0.091)	deleterious(0.03)	neutral(0.371)	HMMPfam_Glyco_transf_29
ETS1	2113	genome.wustl.edu	37	11	128354757	128354757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143820.1	-1	validated	p.V275I	0.971	347	0%	231	32%	25	12%	probably_damaging(0.962)	tolerated(0.08)	deleterious(0.705)	NULL
KCNJ1	3758	genome.wustl.edu	37	11	128709384	128709384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000220.2	-1	reviewed	p.V271A	0.998	176	0%	102	11.8%	3	33.3%	benign(0.006)	tolerated(0.46)	neutral(0.012)	HMMPfam_IRK,superfamily_E set domains
C11orf45	219833	genome.wustl.edu	37	11	128772609	128772609	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145013.1	-1	provisional	e3-1	0.000	104	0%	54	11.1%	0	-	-	-	-	-
ARHGAP32	9743	genome.wustl.edu	37	11	128842538	128842538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.S1274N	0.002	239	0%	122	38.5%	8	50%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128843132	128843132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.A1076V	0.029	459	0%	294	29.9%	13	53.8%	possibly_damaging(0.907)	deleterious(0)	deleterious(0.805)	NULL
ARHGAP32	9743	genome.wustl.edu	37	11	128844060	128844060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.S997N	0.990	511	0%	265	29.8%	3	0%	probably_damaging(0.957)	tolerated(0.07)	deleterious(0.720)	NULL
BARX2	8538	genome.wustl.edu	37	11	129245986	129245986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003658.4	+1	reviewed	p.R19M	1.000	82	0%	39	33.3%	5	20%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
NFRKB	4798	genome.wustl.edu	37	11	129754708	129754708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.R250H	0.995	82	0%	40	30%	12	33.3%	unknown(0)	tolerated(0.15)	-	NULL
PRDM10	56980	genome.wustl.edu	37	11	129814885	129814885	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020228.2	-1	reviewed	p.A181	0.096	117	0%	86	33.7%	2	50%	-	-	-	NULL
APLP2	334	genome.wustl.edu	37	11	130000003	130000003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001642.2	+1	validated	p.R509H	1.000	345	0%	179	30.7%	514	47.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APLP2	334	genome.wustl.edu	37	11	130003542	130003542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001642.2	+1	validated	p.V535M	1.000	173	0.6%	73	32.9%	524	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
ZBTB44	29068	genome.wustl.edu	37	11	130131140	130131140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014155.4	-1	validated	p.S210Y	1.000	181	0%	117	30.8%	19	57.8%	benign(0.313)	deleterious(0)	deleterious(0.542)	NULL
SNX19	399979	genome.wustl.edu	37	11	130785481	130785481	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014758.2	-1	validated	p.Y118*	0.322	89	0%	42	35.7%	9	33.3%	-	-	-	HMMPfam_PXA,HMMSmart_SM00313
NTM	50863	genome.wustl.edu	37	11	132204973	132204973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144058.1	+1	reviewed	p.T334M	0.313	130	0%	65	32.3%	2	0%	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133790951	133790951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.R890H	1.000	77	0%	55	14.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133791002	133791002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.R873H	1.000	68	0%	39	20.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133799613	133799613	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.S528	1.000	62	0%	13	30.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NCAPD3	23310	genome.wustl.edu	37	11	134055323	134055323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015261.2	-1	validated	p.S715L	0.993	189	0%	111	20.7%	7	0%	benign(0.015)	tolerated(0.2)	neutral(0.050)	superfamily_ARM-type_fold
NCAPD3	23310	genome.wustl.edu	37	11	134073086	134073086	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015261.2	-1	validated	p.T492	0.000	171	0%	93	25.8%	6	66.6%	-	-	-	superfamily_ARM-type_fold
NCAPD3	23310	genome.wustl.edu	37	11	134073952	134073952	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015261.2	-1	validated	p.R402*	0.973	298	0%	202	29.2%	12	0%	-	-	-	superfamily_ARM-type_fold
ACAD8	27034	genome.wustl.edu	37	11	134128471	134128471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014384.2	+1	reviewed	p.P148L	0.136	45	0%	22	27.3%	17	5.8%	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
GLB1L3	112937	genome.wustl.edu	37	11	134182312	134182312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.G453R	0.902	78	1.3%	34	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GLB1L2	89944	genome.wustl.edu	37	11	134239748	134239748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138342.3	+1	validated	p.M359I	0.074	111	0%	69	36.2%	26	34.6%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat
GLB1L2	89944	genome.wustl.edu	37	11	134240245	134240245	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138342.3	+1	validated	p.T389	0.000	137	0%	70	35.7%	18	33.3%	-	-	-	NULL
GLB1L2	89944	genome.wustl.edu	37	11	134240941	134240941	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138342.3	+1	validated	p.P419A	1.000	219	0.5%	111	29.7%	23	39.1%	possibly_damaging(0.947)	deleterious(0.03)	deleterious(0.755)	NULL
KDM5A	5927	genome.wustl.edu	37	12	404926	404926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.S1423N	1.000	695	0%	497	16.9%	10	30%	benign(0.31)	tolerated(0.3)	neutral(0.125)	NULL
KDM5A	5927	genome.wustl.edu	37	12	420176	420176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.R1031C	1.000	200	0.5%	108	14.8%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLU-1
KDM5A	5927	genome.wustl.edu	37	12	431630	431630	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.T793	0.145	269	0%	159	28.9%	5	20%	-	-	-	HMMPfam_PLU-1
KDM5A	5927	genome.wustl.edu	37	12	461468	461468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.A351V	1.000	254	0%	188	29.3%	4	25%	possibly_damaging(0.747)	deleterious(0.05)	deleterious(0.619)	NULL
KDM5A	5927	genome.wustl.edu	37	12	464398	464398	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.R266*	1.000	326	0%	258	29.5%	2	0%	-	-	-	NULL
WNK1	65125	genome.wustl.edu	37	12	939252	939252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.L413F	1.000	249	0%	132	36.4%	12	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Kinase_like,HMMPfam_Pkinase
WNK1	65125	genome.wustl.edu	37	12	992690	992690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.E1207*	0.997	340	0.3%	183	33.9%	16	12.5%	-	-	-	NULL
WNK1	65125	genome.wustl.edu	37	12	994546	994546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.A1526T	0.992	789	0.1%	480	22.5%	30	73.3%	unknown(0)	deleterious(0.02)	-	NULL
WNK1	65125	genome.wustl.edu	37	12	1005255	1005255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.G1868S	1.000	270	0%	180	21.7%	18	16.6%	unknown(0)	tolerated(0.18)	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1599363	1599363	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.E1106	1.000	230	0%	110	27.3%	8	25%	-	-	-	HMMPfam_RBD-FIP
ADIPOR2	79602	genome.wustl.edu	37	12	1890196	1890196	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024551.2	+1	validated	p.S264	1.000	221	0.5%	161	22.4%	22	36.3%	-	-	-	HMMPfam_HlyIII
CACNA2D4	93589	genome.wustl.edu	37	12	1910209	1910209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172364.4	-1	reviewed	p.S956	0.999	41	0%	19	31.6%	0	-	-	-	-	NULL
DCP1B	196513	genome.wustl.edu	37	12	2058396	2058396	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152640.3	-1	validated	p.S543	0.001	43	0%	19	31.6%	33	54.5%	-	-	-	NULL
FKBP4	2288	genome.wustl.edu	37	12	2907922	2907922	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002014.3	+1	reviewed	p.G148	0.174	166	0%	102	21.6%	238	37.8%	-	-	-	superfamily_SSF54534
ITFG2	55846	genome.wustl.edu	37	12	2930953	2930953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018463.3	+1	validated	p.V315I	1.000	547	0%	271	23.2%	16	12.5%	benign(0.017)	tolerated(0.26)	neutral(0.035)	NULL
TEAD4	7004	genome.wustl.edu	37	12	3149410	3149410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003213.2	+1	reviewed	p.N392K	1.000	115	0%	54	29.6%	13	23%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_TEA
PARP11	57097	genome.wustl.edu	37	12	3938119	3938119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020367.4	-1	validated	p.I75M	1.000	175	0%	108	33.3%	0	-	benign(0.01)	tolerated(0.13)	neutral(0.253)	HMMPfam_WWE
ENSG00000118976	0	genome.wustl.edu	37	12	3949297	3949297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000237841	+1	known	p.S277Y	0.998	330	0.3%	155	27.7%	1	0%	-	-	-	NULL
CCND2	894	genome.wustl.edu	37	12	4385219	4385219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001759.3	+1	validated	p.N82H	1.000	85	0%	43	30.2%	7	0%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMSmart_SM00385,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin-like
AKAP3	10566	genome.wustl.edu	37	12	4736342	4736342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.A576T	0.000	260	0.4%	150	25.3%	7	14.2%	benign(0.026)	tolerated(0.44)	neutral(0.014)	HMMPfam_AKAP_110,HMMSmart_SM00807
NDUFA9	4704	genome.wustl.edu	37	12	4768306	4768306	+	Missense_Mutation	SNP	C	C	T	rs190837666	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005002.4	+1	reviewed	p.A172V	1.000	270	0%	201	22.4%	100	44%	possibly_damaging(0.794)	tolerated(0.55)	neutral(0.305)	superfamily_NAD(P)-bd
GALNT8	26290	genome.wustl.edu	37	12	4829935	4829935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017417.1	+1	reviewed	p.G31V	0.000	224	0%	121	21.5%	0	-	benign(0.148)	tolerated(0.21)	neutral(0.057)	NULL
KCNA6	3742	genome.wustl.edu	37	12	4919424	4919424	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.R73*	0.985	103	0%	59	10.2%	0	-	-	-	-	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
KCNA5	3741	genome.wustl.edu	37	12	5154060	5154060	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002234.2	+1	reviewed	p.A249	0.081	144	0%	82	13.4%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
ANO2	57101	genome.wustl.edu	37	12	5744330	5744330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020373.2	-1	validated	p.L602I	1.000	86	0%	52	17.3%	0	-	possibly_damaging(0.743)	tolerated(0.26)	neutral(0.306)	NULL
VWF	7450	genome.wustl.edu	37	12	6122725	6122725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.V1848M	0.029	202	0%	82	32.9%	34	0%	benign(0.008)	tolerated(0.11)	neutral(0.272)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
VWF	7450	genome.wustl.edu	37	12	6128762	6128762	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.R1274	0.988	229	0%	100	32%	15	0%	-	-	-	superfamily_vWA-like
LTBR	4055	genome.wustl.edu	37	12	6497628	6497630	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002342.1	+1	reviewed	p.S245in_frame_del	0.004:0.796:0.941	-	-	-	-	-	-	-	-	-	NULL
VAMP1	6843	genome.wustl.edu	37	12	6575434	6575434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014231.3	-1	reviewed	p.T29I	0.993	257	0%	162	25.3%	4	50%	benign(0.382)	deleterious(0.05)	neutral(0.467)	NULL
CHD4	1108	genome.wustl.edu	37	12	6696626	6696626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.T1268I	1.000	599	0%	357	26.3%	69	81.1%	benign(0.129)	tolerated(0.12)	neutral(0.272)	NULL
ING4	51147	genome.wustl.edu	37	12	6762186	6762186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127582.1	-1	reviewed	p.D103Y	1.000	199	0.5%	134	30.6%	21	33.3%	benign(0.294)	deleterious(0)	deleterious(0.535)	NULL
C12orf53	196500	genome.wustl.edu	37	12	6806531	6806531	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153685.2	-1	predicted	p.R149*	0.767	129	0%	55	18.2%	1	0%	-	-	-	NULL
LAG3	3902	genome.wustl.edu	37	12	6884528	6884528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002286.5	+1	reviewed	p.R291W	0.001	250	0%	94	28.7%	31	6.4%	benign(0.087)	deleterious(0.02)	neutral(0.390)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
USP5	8078	genome.wustl.edu	37	12	6965952	6965952	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098536.1	+1	validated	p.R222	0.998	140	0%	67	25.4%	78	46.1%	-	-	-	HMMPfam_zf-UBP,HMMSmart_SM00290
USP5	8078	genome.wustl.edu	37	12	6971694	6971694	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098536.1	+1	validated	p.F578	1.000	210	0%	106	24.5%	113	43.3%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
ATN1	1822	genome.wustl.edu	37	12	7043711	7043711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007026.1	+1	reviewed	p.E83D	1.000	80	0%	37	16.2%	58	60.3%	benign(0.144)	tolerated(0.78)	neutral(0.014)	HMMPfam_Atrophin-1
ATN1	1822	genome.wustl.edu	37	12	7045481	7045481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007026.1	+1	reviewed	p.T351P	0.001	639	0%	372	30.9%	161	45.3%	probably_damaging(0.976)	tolerated(0.23)	neutral(0.459)	HMMPfam_Atrophin-1
PHB2	11331	genome.wustl.edu	37	12	7078670	7078670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144831.1	-1	validated	p.G95C	1.000	167	0%	84	29.8%	294	43.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Band_7,HMMSmart_SM00244
C1R	715	genome.wustl.edu	37	12	7241941	7241941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290575	-1	known	p.P253H	1.000	86	0%	42	33.3%	50	6%	probably_damaging(0.958)	deleterious(0.04)	deleterious(0.750)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PEX5	5830	genome.wustl.edu	37	12	7360322	7360322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131023.1	+1	reviewed	p.R360H	0.999	141	0%	80	31.2%	24	25%	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_SSF48452
CD163L1	283316	genome.wustl.edu	37	12	7528077	7528077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.A934V	0.976	233	0%	122	26.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163L1	283316	genome.wustl.edu	37	12	7548894	7548894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.A616V	0.997	373	0%	242	28.5%	0	-	benign(0.245)	deleterious(0)	deleterious(0.470)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
CD163	9332	genome.wustl.edu	37	12	7637728	7637728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.A915T	0.000	229	0.4%	160	32.5%	25	0%	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
DPPA3	359787	genome.wustl.edu	37	12	7864170	7864170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199286.2	+1	reviewed	p.D2Y	0.147	103	0%	52	26.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
FOXJ2	55810	genome.wustl.edu	37	12	8196641	8196641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.P191L	0.895	345	0%	169	32.5%	2	50%	benign(0.07)	tolerated(0.29)	neutral(0.034)	NULL
FOXJ2	55810	genome.wustl.edu	37	12	8197509	8197509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.L258I	1.000	833	0%	514	22.2%	4	0%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
C3AR1	719	genome.wustl.edu	37	12	8212518	8212518	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004054.2	-1	validated	p.W88*	1.000	313	0%	182	29.1%	5	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CLEC4A	50856	genome.wustl.edu	37	12	8290827	8290827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016184.3	+1	reviewed	p.V220I	0.000	395	0%	260	25.4%	1	0%	benign(0.03)	tolerated(0.71)	neutral(0.003)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
FAM90A1	55138	genome.wustl.edu	37	12	8374494	8374494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018088.3	-1	validated	p.R440H	0.000	44	0%	24	25%	1	100%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
FAM90A1	55138	genome.wustl.edu	37	12	8374610	8374610	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018088.3	-1	validated	p.N401	0.000	40	0%	11	54.5%	0	-	-	-	-	NULL
CLEC4D	338339	genome.wustl.edu	37	12	8673790	8673790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080387.4	+1	reviewed	p.K191E	0.404	291	0%	172	29.1%	1	0%	benign(0.194)	tolerated(0.34)	neutral(0.041)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
AICDA	57379	genome.wustl.edu	37	12	8757905	8757905	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020661.2	-1	reviewed	p.A111	0.987	74	0%	48	35.4%	0	-	-	-	-	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
PHC1	1911	genome.wustl.edu	37	12	9085946	9085946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433847	+1	known	p.G568S	1.000	40	0%	34	14.7%	4	0%	-	-	-	NULL
M6PR	4074	genome.wustl.edu	37	12	9096056	9096056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002355.2	-1	reviewed	p.L177M	1.000	236	0%	124	22.6%	65	44.6%	possibly_damaging(0.499)	tolerated(0.28)	neutral(0.198)	HMMPfam_Man-6-P_recep,superfamily_Mannose 6-phosphate receptor domain
A2M	2	genome.wustl.edu	37	12	9259149	9259149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000014.4	-1	reviewed	p.L311P	0.751	55	0%	34	38.2%	46	0%	benign(0.014)	deleterious(0.04)	neutral(0.349)	NULL
PZP	5858	genome.wustl.edu	37	12	9317761	9317761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.L821I	0.696	406	0%	243	13.2%	0	-	probably_damaging(0.993)	tolerated(0.27)	deleterious(0.484)	HMMPfam_A2M
DDX12P	440081	genome.wustl.edu	37	12	9573167	9573167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432996	-1	known	p.V716I	0.995	45	0%	15	26.7%	12	25%	-	-	-	HMMSmart_SM00491
KLRB1	3820	genome.wustl.edu	37	12	9751121	9751121	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002258.2	-1	reviewed	p.L130	0.972	658	0%	476	27.7%	3	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold
CLEC2D	29121	genome.wustl.edu	37	12	9833566	9833566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004419.2	+1	reviewed	p.R37C	0.000	185	0%	132	21.2%	1	0%	benign(0.237)	deleterious(0.05)	neutral(0.369)	NULL
KLRF1	51348	genome.wustl.edu	37	12	9997050	9997050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016523.1	+1	provisional	p.S207R	0.992	330	0%	214	31.3%	2	50%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CLEC12B	387837	genome.wustl.edu	37	12	10165442	10165442	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129998.1	+1	validated	p.C50	0.491	298	0.3%	177	33.3%	0	-	-	-	-	NULL
CLEC12B	387837	genome.wustl.edu	37	12	10168228	10168228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129998.1	+1	validated	p.Q194H	0.001	874	0%	544	30.1%	0	-	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ENSG00000180574	0	genome.wustl.edu	37	12	10658575	10658575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322446	+1	known	p.V25A	1.000	111	0%	65	27.7%	23	0%	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
TAS2R10	50839	genome.wustl.edu	37	12	10978609	10978609	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023921.1	-1	reviewed	p.F87C	0.000	261	0%	223	29.1%	0	-	possibly_damaging(0.51)	deleterious(0)	deleterious(0.616)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
PRR4	11272	genome.wustl.edu	37	12	10999863	10999863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431566	-1	known	p.V52A	0.000	374	0%	261	29.1%	28	14.2%	benign(0.094)	-	-	NULL
TAS2R50	259296	genome.wustl.edu	37	12	11139301	11139301	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176890.2	-1	validated	p.V53	0.221	678	0%	492	21.7%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
TAS2R19	259294	genome.wustl.edu	37	12	11174832	11174832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176888.1	-1	provisional	p.F113	0.290	533	0%	370	10.8%	0	-	-	-	-	HMMPfam_TAS2R,superfamily_SSF81321
TAS2R19	259294	genome.wustl.edu	37	12	11175089	11175089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176888.1	-1	provisional	p.A28T	0.023	301	0%	210	37.1%	0	-	possibly_damaging(0.523)	deleterious(0.04)	deleterious(0.525)	HMMPfam_TAS2R,superfamily_SSF81321
PRB3	5544	genome.wustl.edu	37	12	11420522	11420522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000279573	-1	known	p.R221C	0.001	984	0.1%	662	11.5%	0	-	unknown(0)	tolerated(0.08)	-	NULL
PRB3	5544	genome.wustl.edu	37	12	11420585	11420585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000279573	-1	known	p.R200C	0.000	1410	0%	921	9.6%	1	0%	unknown(0)	deleterious(0.05)	-	NULL
PRB4	5545	genome.wustl.edu	37	12	11461754	11461754	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002723.3	-1	reviewed	p.G55*	0.002	1388	0.1%	765	22.1%	0	-	-	-	-	NULL
BCL2L14	79370	genome.wustl.edu	37	12	12247769	12247769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138722.1	+1	reviewed	p.A284S	0.017	348	0%	206	26.7%	1	0%	possibly_damaging(0.438)	tolerated(0.16)	neutral(0.202)	superfamily_Bcl-2 inhibitors of programmed cell death
LRP6	4040	genome.wustl.edu	37	12	12336914	12336914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002336.2	-1	reviewed	p.G326S	1.000	437	0%	279	25.1%	4	25%	benign(0.265)	tolerated(0.22)	neutral(0.070)	superfamily_EGF/Laminin
DUSP16	80824	genome.wustl.edu	37	12	12629969	12629969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.R599M	1.000	208	0%	108	26.9%	32	25%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
GPR19	2842	genome.wustl.edu	37	12	12815176	12815176	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006143.2	-1	validated	p.S69	1.000	364	0%	150	28%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CDKN1B	1027	genome.wustl.edu	37	12	12871855	12871855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004064.3	+1	reviewed	p.P191H	0.954	136	0%	72	36.1%	40	32.5%	benign(0.065)	deleterious(0.04)	neutral(0.353)	NULL
GPRC5A	9052	genome.wustl.edu	37	12	13061667	13061667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003979.3	+1	reviewed	p.V162I	0.005	1134	0%	588	27.2%	13	15.3%	benign(0.112)	tolerated(0.45)	neutral(0.021)	HMMPfam_7tm_3
GRIN2B	2904	genome.wustl.edu	37	12	13716607	13716607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.V1189M	0.988	114	0%	34	29.4%	0	-	possibly_damaging(0.819)	tolerated(0.18)	neutral(0.365)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13717235	13717235	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.N979	0.977	137	0%	53	32.1%	0	-	-	-	-	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13717507	13717507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.A889T	0.989	211	0%	106	31.1%	0	-	possibly_damaging(0.477)	tolerated(0.69)	neutral(0.160)	HMMPfam_NMDAR2_C
GRIN2B	2904	genome.wustl.edu	37	12	13906490	13906490	+	Silent	SNP	G	G	A	rs142203984		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.I257	0.963	446	0%	328	25.3%	0	-	-	-	-	superfamily_SSF53822
ATF7IP	55729	genome.wustl.edu	37	12	14578385	14578385	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.S512	0.032	217	0.5%	133	28.6%	22	40.9%	-	-	-	NULL
ATF7IP	55729	genome.wustl.edu	37	12	14628839	14628839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018179.3	+1	validated	p.G960C	0.886	96	0%	83	26.5%	29	41.3%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14825806	14825806	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004963.3	-1	validated	e9+1	1.000	322	0%	215	33%	0	-	-	-	-	-
WBP11	51729	genome.wustl.edu	37	12	14944111	14944111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016312.2	-1	reviewed	p.R336H	1.000	205	0%	123	12.2%	83	22.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ARHGDIB	397	genome.wustl.edu	37	12	15095469	15095469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001175.4	-1	validated	p.E198G	0.999	432	0%	244	25%	137	0%	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_Rho_GDI,superfamily_E set domains
PIK3C2G	5288	genome.wustl.edu	37	12	18649026	18649026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.P901S	1.000	22	0.000	8	0.500	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
PLEKHA5	54477	genome.wustl.edu	37	12	19475256	19475256	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019012.3	+1	validated	p.R641*	1.000	166	0%	105	23.8%	23	30.4%	-	-	-	NULL
SLCO1B3	28234	genome.wustl.edu	37	12	21015790	21015790	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019844.2	+1	validated	e6+2	1.000	188	0%	127	31.5%	0	-	-	-	-	-
LST-3TM12	338821	genome.wustl.edu	37	12	21175840	21175840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009562.4	+1	validated	p.L133I	0.324	485	0%	319	30.7%	0	-	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	HMMPfam_OATP,superfamily_MFS general substrate transporter
LST-3TM12	338821	genome.wustl.edu	37	12	21205135	21205135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009562.4	+1	validated	p.I432M	0.946	470	0%	485	28%	0	-	probably_damaging(0.96)	tolerated(0.07)	deleterious(0.722)	HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors
RECQL	5965	genome.wustl.edu	37	12	21628410	21628410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002907.3	-1	reviewed	p.G403E	1.000	224	0%	148	25%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC9	10060	genome.wustl.edu	37	12	22069911	22069911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005691.2	-1	reviewed	p.G178V	1.000	775	0.1%	703	25%	0	-	probably_damaging(0.985)	tolerated(0.15)	deleterious(0.673)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22609905	22609905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.E908D	1.000	233	0%	187	21.9%	21	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22678601	22678601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.L130I	1.000	397	0%	273	24.9%	7	71.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22680654	22680654	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	e3+1	1.000	245	0%	174	27.6%	0	-	-	-	-	-
KIAA0528	9847	genome.wustl.edu	37	12	22688245	22688245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014802.1	-1	predicted	p.V42M	1.000	242	0%	154	29.9%	4	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SOX5	6660	genome.wustl.edu	37	12	23687261	23687261	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006940.4	-1	reviewed	p.A728	0.999	284	0%	172	27.3%	0	-	-	-	-	NULL
SOX5	6660	genome.wustl.edu	37	12	23689492	23689492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006940.4	-1	reviewed	p.R628M	1.000	121	0%	64	14.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HMG-box
C12orf77	196415	genome.wustl.edu	37	12	25148922	25148922	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101339.1	-1	validated	p.R76*	0.000	105	0%	54	11.1%	0	-	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25362839	25362839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004985.3	-1	reviewed	p.D153N	1.000	166	0%	92	20.7%	16	25%	possibly_damaging(0.766)	tolerated(0.25)	neutral(0.321)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFLTD1	160492	genome.wustl.edu	37	12	25672811	25672811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145728.1	-1	validated	p.A333S	0.000	285	0%	171	28.7%	0	-	benign(0.013)	tolerated(0.07)	neutral(0.320)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26493120	26493120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.L2667V	1.000	133	0%	110	38.2%	4	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26628236	26628236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.A2112V	1.000	122	0%	64	34.4%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26775297	26775297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.R1055M	1.000	159	0%	105	35.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITPR2	3709	genome.wustl.edu	37	12	26807025	26807025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.G875V	1.000	151	0%	101	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C12orf71	728858	genome.wustl.edu	37	12	27235081	27235081	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080406.1	-1	inferred	p.D112	0.000	209	0%	114	31.6%	0	-	-	-	-	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27787870	27787870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003622.2	+1	reviewed	p.G31V	1.000	347	0.3%	217	29%	9	55.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
PPFIBP1	8496	genome.wustl.edu	37	12	27835330	27835330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003622.2	+1	reviewed	p.I686S	1.000	644	0%	428	26.2%	15	33.3%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
CCDC91	55297	genome.wustl.edu	37	12	28636989	28636989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018318.3	+1	validated	p.T369N	0.937	114	0%	96	17.7%	40	40%	benign(0.17)	tolerated(0.43)	neutral(0.029)	NULL
FAR2	55711	genome.wustl.edu	37	12	29423409	29423409	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018099.3	+1	provisional	p.G9	0.009	184	0%	104	29.8%	10	50%	-	-	-	superfamily_NAD(P)-bd
OVCH1	341350	genome.wustl.edu	37	12	29607785	29607785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.A840V	0.000	89	0%	72	26.4%	0	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30882148	30882148	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002259.1	-1	validated	p.M406L	0.177	316	0%	238	26.9%	5	40%	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
DENND5B	160518	genome.wustl.edu	37	12	31576588	31576588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144973.3	-1	validated	p.H805Y	1.000	491	0%	291	10.3%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RUN
DENND5B	160518	genome.wustl.edu	37	12	31600541	31600541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144973.3	-1	validated	p.L598M	1.000	144	0%	72	22.2%	1	0%	benign(0.022)	tolerated(0.07)	neutral(0.320)	NULL
ENSG00000223722	0	genome.wustl.edu	37	12	31907999	31907999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453713	+1	known	p.L116I	0.625	377	0%	212	23.6%	1	0%	-	-	-	HMMPfam_CD225
C12orf35	55196	genome.wustl.edu	37	12	32138389	32138389	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.S1500	0.000	125	0%	70	34.3%	49	38.7%	-	-	-	NULL
DNM1L	10059	genome.wustl.edu	37	12	32858785	32858785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381000	+1	known	p.H93Y	1.000	541	0%	313	30.7%	0	-	benign(0.292)	deleterious(0.04)	neutral(0.439)	HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540
DNM1L	10059	genome.wustl.edu	37	12	32873729	32873729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012062.3	+1	reviewed	p.R291M	1.000	150	0%	103	9.7%	26	0%	possibly_damaging(0.577)	tolerated(0.12)	neutral(0.459)	HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases
PKP2	5318	genome.wustl.edu	37	12	32975456	32975456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004572.3	-1	reviewed	p.T639I	0.930	157	0%	109	44%	13	46.1%	possibly_damaging(0.471)	tolerated(0.06)	deleterious(0.478)	superfamily_ARM repeat
SYT10	341359	genome.wustl.edu	37	12	33559921	33559921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198992.2	-1	provisional	p.P294T	1.000	279	0%	151	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
CPNE8	144402	genome.wustl.edu	37	12	39087463	39087463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153634.2	-1	reviewed	p.A380V	1.000	474	0%	339	12.1%	2	50%	benign(0.013)	tolerated(0.08)	neutral(0.300)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
CPNE8	144402	genome.wustl.edu	37	12	39087553	39087553	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153634.2	-1	reviewed	p.I350S	1.000	405	0.2%	296	30.7%	4	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
ABCD2	225	genome.wustl.edu	37	12	39979986	39979986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005164.3	-1	reviewed	p.V587A	1.000	171	0%	99	16.2%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCD2	225	genome.wustl.edu	37	12	40013291	40013291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005164.3	-1	reviewed	p.R43C	1.000	165	0%	113	23.9%	0	-	probably_damaging(0.968)	tolerated(0.08)	deleterious(0.710)	NULL
C12orf40	283461	genome.wustl.edu	37	12	40110611	40110611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.D489Y	0.920	217	0.9%	229	11.8%	0	-	probably_damaging(1)	-	-	NULL
SLC2A13	114134	genome.wustl.edu	37	12	40158346	40158346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052885.3	-1	validated	p.A546T	1.000	793	0%	654	13%	9	11.1%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRRK2	120892	genome.wustl.edu	37	12	40688680	40688680	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.R948*	0.078	197	0.5%	186	25.8%	0	-	-	-	-	superfamily_SSF52058
LRRK2	120892	genome.wustl.edu	37	12	40728943	40728943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.V1978I	1.000	379	0%	245	31.4%	1	0%	probably_damaging(0.975)	tolerated(0.34)	neutral(0.440)	superfamily_Kinase_like,HMMPfam_Pkinase
CNTN1	1272	genome.wustl.edu	37	12	41410532	41410532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001843.2	+1	reviewed	p.A745T	1.000	336	0%	229	29.3%	3	33.3%	possibly_damaging(0.705)	deleterious(0.01)	deleterious(0.659)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PDZRN4	29951	genome.wustl.edu	37	12	41900431	41900431	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.T81	0.998	266	0%	195	30.8%	0	-	-	-	-	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967266	41967266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.S637	0.994	424	0%	272	29.8%	0	-	-	-	-	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41967522	41967522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013377.3	+1	validated	p.G723S	1.000	239	0%	128	26.6%	0	-	benign(0.018)	tolerated(0.68)	neutral(0.003)	NULL
GXYLT1	283464	genome.wustl.edu	37	12	42481616	42481616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173601.1	-1	validated	p.R432H	0.001	66	1.5%	50	44%	16	56.2%	possibly_damaging(0.849)	tolerated(0.14)	deleterious(0.576)	NULL
GXYLT1	283464	genome.wustl.edu	37	12	42491289	42491289	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173601.1	-1	validated	p.D372	0.993	425	0%	352	27%	18	44.4%	-	-	-	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
PPHLN1	51535	genome.wustl.edu	37	12	42840067	42840067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016488.6	+1	reviewed	p.S442Y	0.349	94	0%	49	24.5%	16	25%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
ADAMTS20	80070	genome.wustl.edu	37	12	43822249	43822249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.D1247G	1.000	146	0%	94	35.1%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTS20	80070	genome.wustl.edu	37	12	43822577	43822577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.T1172N	0.001	247	0%	177	27.7%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PUS7L	83448	genome.wustl.edu	37	12	44130305	44130305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098614.1	-1	validated	p.T535I	1.000	413	0%	225	30.2%	11	27.2%	benign(0.017)	tolerated(0.08)	neutral(0.300)	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
IRAK4	51135	genome.wustl.edu	37	12	44161948	44161948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114182.2	+1	reviewed	p.R12C	1.000	122	0%	68	22.1%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DEATH domain
NELL2	4753	genome.wustl.edu	37	12	45168601	45168601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.C358Y	1.000	167	0%	91	24.2%	1	0%	possibly_damaging(0.557)	deleterious(0.01)	deleterious(0.596)	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_ConA_like_lec_gl
PLEKHA8P1	51054	genome.wustl.edu	37	12	45567211	45567211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015899.1	-1	provisional	p.I313T	1.000	367	0%	214	33.6%	9	44.4%	-	-	-	HMMPfam_GLTP,superfamily_Glycolipid_transfer_prot
SCAF11	9169	genome.wustl.edu	37	12	46320497	46320497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.T996I	0.438	869	0%	501	25.3%	46	43.4%	benign(0.271)	deleterious(0)	deleterious(0.474)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46320850	46320850	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.S878	0.721	794	0.1%	493	12.2%	36	25%	-	-	-	NULL
AMIGO2	347902	genome.wustl.edu	37	12	47471706	47471706	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143668.1	-1	validated	p.V360	0.988	276	0.4%	132	27.3%	4	75%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
VDR	7421	genome.wustl.edu	37	12	48251360	48251360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000376.2	-1	reviewed	p.R130H	0.958	148	0%	96	32.3%	11	18.1%	benign(0.004)	tolerated(0.28)	neutral(0.032)	superfamily_Nuclear receptor ligand-binding domain
VDR	7421	genome.wustl.edu	37	12	48272799	48272799	+	Missense_Mutation	SNP	C	C	T	rs121909790		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000376.2	-1	reviewed	p.G33D	1.000	66	0%	43	32.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
TMEM106C	79022	genome.wustl.edu	37	12	48358169	48358169	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143842.1	+1	validated	p.T50	1.000	116	0%	60	41.7%	231	42.8%	-	-	-	HMMPfam_DUF1356
SENP1	29843	genome.wustl.edu	37	12	48465492	48465492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014554.2	-1	validated	p.V318A	1.000	123	0%	83	39.8%	12	41.6%	benign(0.418)	tolerated(0.23)	neutral(0.177)	NULL
ZNF641	121274	genome.wustl.edu	37	12	48741746	48741746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152320.2	-1	validated	p.P57H	0.986	66	0%	30	16.7%	8	37.5%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
LOC100288297	100288297	genome.wustl.edu	37	12	49075278	49075278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343165.1	+1	model	p.A63T	1.000	266	0%	143	30.1%	19	47.3%	-	-	-	NULL
ADCY6	112	genome.wustl.edu	37	12	49171215	49171215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	p.A409V	1.000	168	0%	102	10.8%	23	8.6%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
DDX23	9416	genome.wustl.edu	37	12	49224397	49224397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004818.2	-1	reviewed	p.S773Y	1.000	116	0%	36	22.2%	119	44.5%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC65	85478	genome.wustl.edu	37	12	49315112	49315112	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033124.4	+1	validated	p.D447	0.847	201	0%	116	28.4%	1	0%	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49420068	49420068	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.C5227*	1.000	101	0%	51	37.3%	14	35.7%	-	-	-	HMMPfam_FYRN,HMMSmart_SM00541
MLL2	8085	genome.wustl.edu	37	12	49438017	49438017	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.A1718	0.998	62	0%	26	19.2%	2	100%	-	-	-	NULL
TUBA1A	7846	genome.wustl.edu	37	12	49580443	49580443	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006009.2	-1	reviewed	p.G59	1.000	394	0%	250	34%	500	35.2%	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
TUBA1C	84790	genome.wustl.edu	37	12	49666252	49666252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032704.3	+1	provisional	p.S198P	1.000	262	0%	129	18.6%	1403	11.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
TROAP	10024	genome.wustl.edu	37	12	49724677	49724677	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005480.3	+1	validated	p.S683	0.974	626	0%	262	25.6%	21	38%	-	-	-	NULL
SPATS2	65244	genome.wustl.edu	37	12	49912932	49912932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023071.3	+1	validated	p.E325D	1.000	155	0%	117	14.5%	67	11.9%	probably_damaging(0.997)	tolerated(0.21)	deleterious(0.510)	HMMPfam_DUF1387
MCRS1	10445	genome.wustl.edu	37	12	49958615	49958615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012300.1	-1	validated	p.R131C	1.000	77	0%	30	20%	70	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49992595	49992595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032130.2	-1	validated	p.K769N	0.029	147	0%	76	21.1%	0	-	benign(0.399)	deleterious(0.01)	deleterious(0.534)	NULL
FAM186B	84070	genome.wustl.edu	37	12	49994478	49994478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032130.2	-1	validated	p.E315D	0.987	721	0.1%	333	13.8%	0	-	benign(0.316)	deleterious(0)	deleterious(0.543)	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50186235	50186235	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433948	-1	known	p.P977S	0.954	37	0%	15	33.3%	11	36.3%	-	-	-	NULL
NCKAP5L	57701	genome.wustl.edu	37	12	50196894	50196894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037806.3	-1	validated	p.R60C	1.000	169	0%	71	36.6%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAIM2	23017	genome.wustl.edu	37	12	50264311	50264311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012306.2	-1	validated	p.Q309H	1.000	52	0%	15	40%	52	61.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_UPF0005
FAIM2	23017	genome.wustl.edu	37	12	50283284	50283284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012306.2	-1	validated	p.V211I	0.039	112	0%	47	17%	66	46.9%	benign(0)	tolerated(1)	-	HMMPfam_UPF0005
LOC100131403	100131403	genome.wustl.edu	37	12	50348009	50348009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718330.1	-1	model	p.A37T	0.997	49	2%	11	45.5%	0	-	-	-	-	NULL
AQP5	362	genome.wustl.edu	37	12	50358928	50358928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001651.2	+1	reviewed	p.R256W	1.000	14	0%	13	53.8%	14	7.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GPD1	2819	genome.wustl.edu	37	12	50500176	50500176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005276.2	+1	provisional	p.V156M	1.000	97	0%	58	10.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_NAD_Gly3P_dh_N,superfamily_NAD(P)-bd
LIMA1	51474	genome.wustl.edu	37	12	50571641	50571641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113546.1	-1	validated	p.A497T	1.000	173	0%	125	24%	17	47%	benign(0.077)	tolerated(0.09)	neutral(0.302)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51065091	51065091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173602.2	+1	validated	p.T184A	1.000	222	0%	126	24.6%	9	33.3%	probably_damaging(0.988)	tolerated(0.06)	deleterious(0.760)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51086795	51086795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173602.2	+1	validated	p.A573V	1.000	274	0%	144	23.6%	8	25%	benign(0.025)	deleterious(0.02)	neutral(0.384)	superfamily_Acetyl-CoA synthetase-like
DIP2B	57609	genome.wustl.edu	37	12	51128873	51128873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173602.2	+1	validated	p.R1354H	0.999	137	0.7%	83	15.7%	15	6.6%	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DIP2B	57609	genome.wustl.edu	37	12	51133245	51133245	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173602.2	+1	validated	p.S1410	0.761	236	0%	133	24.1%	13	30.7%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
SLC11A2	4891	genome.wustl.edu	37	12	51390699	51390699	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000617.2	-1	reviewed	p.S244	1.000	149	0%	86	30.2%	41	70.7%	-	-	-	HMMPfam_Nramp
SLC11A2	4891	genome.wustl.edu	37	12	51402405	51402405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000617.2	-1	reviewed	p.S13G	0.032	421	0%	233	27.5%	19	89.4%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
LETMD1	25875	genome.wustl.edu	37	12	51449937	51449937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015416.3	+1	validated	p.G224D	0.995	318	0%	201	29.9%	22	59%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LETM1
CSRNP2	81566	genome.wustl.edu	37	12	51458316	51458316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030809.1	-1	provisional	p.R282Q	1.000	170	0%	85	24.7%	29	55.1%	possibly_damaging(0.881)	tolerated(0.27)	neutral(0.377)	NULL
CELA1	1990	genome.wustl.edu	37	12	51723539	51723539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001971.5	-1	reviewed	p.R230W	0.001	327	0.3%	217	27.2%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
SCN8A	6334	genome.wustl.edu	37	12	52080960	52080960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.R191W	1.000	202	0%	124	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52081003	52081003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.A205V	1.000	195	0%	116	21.6%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN8A	6334	genome.wustl.edu	37	12	52100280	52100280	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.G472	0.990	114	0%	54	22.2%	0	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52180592	52180592	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.Y1403*	0.967	118	0%	86	27.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ANKRD33	341405	genome.wustl.edu	37	12	52282512	52282512	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182608.3	+1	validated	p.A102	0.998	80	1.3%	44	15.9%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ACVR1B	91	genome.wustl.edu	37	12	52370192	52370192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004302.3	+1	reviewed	p.L138P	0.999	218	0%	118	32.2%	10	30%	possibly_damaging(0.865)	deleterious(0.05)	deleterious(0.680)	NULL
GRASP	160622	genome.wustl.edu	37	12	52402997	52402997	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181711.2	+1	provisional	p.N90K	0.911	115	0%	48	16.7%	0	-	benign(0.055)	deleterious(0.04)	neutral(0.352)	superfamily_PDZ domain-like
KRT86	3892	genome.wustl.edu	37	12	52702274	52702274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002284.3	+1	reviewed	p.V456I	0.993	41	0%	13	38.5%	3	0%	benign(0.001)	tolerated(0.98)	-	NULL
KRT85	3891	genome.wustl.edu	37	12	52758820	52758820	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.C185	0.486	136	0%	53	28.3%	0	-	-	-	-	HMMPfam_Filament
KRT85	3891	genome.wustl.edu	37	12	52758913	52758913	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.K154	0.941	209	0%	72	13.9%	0	-	-	-	-	HMMPfam_Filament
KRT75	9119	genome.wustl.edu	37	12	52818412	52818412	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004693.2	-1	reviewed	p.G515	1.000	172	0%	95	12.6%	0	-	-	-	-	NULL
KRT6B	3854	genome.wustl.edu	37	12	52843379	52843379	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005555.3	-1	reviewed	p.S317	0.567	724	0%	377	31.6%	0	-	-	-	-	HMMPfam_Filament
KRT6C	286887	genome.wustl.edu	37	12	52867237	52867237	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173086.4	-1	reviewed	p.G95	0.098	175	0%	104	31.7%	0	-	-	-	-	NULL
KRT72	140807	genome.wustl.edu	37	12	52984716	52984716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080747.2	-1	reviewed	p.Q331H	0.718	257	0%	138	21.7%	0	-	possibly_damaging(0.628)	deleterious(0.03)	deleterious(0.584)	HMMPfam_Filament
KRT77	374454	genome.wustl.edu	37	12	53096799	53096799	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175078.2	-1	reviewed	p.T140	0.613	302	0%	169	14.8%	0	-	-	-	-	NULL
KRT76	51350	genome.wustl.edu	37	12	53162582	53162582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015848.4	-1	reviewed	p.S611I	0.017	195	0%	93	37.6%	0	-	unknown(0)	tolerated(0.13)	-	NULL
KRT76	51350	genome.wustl.edu	37	12	53169201	53169201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015848.4	-1	reviewed	p.M262I	1.000	323	0%	184	22.3%	0	-	benign(0.235)	deleterious(0.03)	neutral(0.388)	HMMPfam_Filament
KRT79	338785	genome.wustl.edu	37	12	53228040	53228040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175834.2	-1	reviewed	p.R2M	0.001	36	0%	27	22.2%	0	-	possibly_damaging(0.528)	deleterious(0.01)	deleterious(0.584)	NULL
KRT8	3856	genome.wustl.edu	37	12	53295843	53295843	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002273.3	-1	reviewed	p.E113V	1.000	78	0%	48	20.8%	394	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT18	3875	genome.wustl.edu	37	12	53345577	53345577	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000224.2	+1	reviewed	p.T295	0.002	112	0%	66	34.8%	1013	45.1%	-	-	-	HMMPfam_Filament
EIF4B	1975	genome.wustl.edu	37	12	53416289	53416289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001417.4	+1	validated	p.R182H	1.000	290	0%	169	24.3%	376	43.3%	benign(0.019)	deleterious(0.03)	neutral(0.365)	superfamily_SSF54928
TENC1	23371	genome.wustl.edu	37	12	53451420	53451420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015319.2	+1	reviewed	p.H315Q	0.998	299	0%	123	22%	16	12.5%	benign(0.169)	deleterious(0.02)	neutral(0.399)	superfamily_C2_CaLB,HMMPfam_PTEN_C2
ITGB7	3695	genome.wustl.edu	37	12	53585680	53585680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000889.1	-1	provisional	p.R760H	1.000	238	0%	110	11.8%	14	21.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Integrin_b_cyt
C12orf10	60314	genome.wustl.edu	37	12	53700835	53700835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021640.3	+1	validated	p.A345T	1.000	146	0%	68	29.4%	34	8.8%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_UPF0160
SP7	121340	genome.wustl.edu	37	12	53722253	53722253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152860.1	-1	provisional	p.V325I	1.000	121	0%	45	22.2%	0	-	possibly_damaging(0.729)	deleterious(0)	deleterious(0.710)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SP1	6667	genome.wustl.edu	37	12	53776039	53776039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138473.2	+1	validated	p.G103D	0.999	84	0%	52	25%	24	58.3%	benign(0.008)	deleterious(0.02)	neutral(0.383)	NULL
AMHR2	269	genome.wustl.edu	37	12	53819306	53819306	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020547.2	+1	reviewed	p.G190	0.002	139	0%	69	26.1%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
MAP3K12	7786	genome.wustl.edu	37	12	53880794	53880794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006301.2	-1	reviewed	p.L95M	1.000	92	0%	29	31%	1	0%	possibly_damaging(0.729)	tolerated(0.11)	deleterious(0.537)	NULL
HOXC11	3227	genome.wustl.edu	37	12	54367039	54367039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014212.3	+1	reviewed	p.V5A	1.000	72	0%	24	16.7%	0	-	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	NULL
HOXC11	3227	genome.wustl.edu	37	12	54367393	54367393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014212.3	+1	reviewed	p.G123D	1.000	147	0%	90	27.8%	0	-	probably_damaging(0.98)	tolerated(0.13)	deleterious(0.676)	NULL
HOXC10	3226	genome.wustl.edu	37	12	54383198	54383198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017409.3	+1	reviewed	p.R333W	1.000	132	0%	59	20.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HOXC8	3224	genome.wustl.edu	37	12	54403504	54403504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022658.3	+1	reviewed	p.A146T	1.000	459	0.2%	277	27.1%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	superfamily_Homeodomain-like
HNRNPA1	3178	genome.wustl.edu	37	12	54676050	54676050	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031157.2	+1	reviewed	p.T152	1.000	116	0.9%	78	25.6%	395	44.5%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
GTSF1	121355	genome.wustl.edu	37	12	54857035	54857035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144594.2	-1	validated	p.A55D	1.000	153	0%	84	34.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_UPF0224
NCKAP1L	3071	genome.wustl.edu	37	12	54910705	54910705	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005337.4	+1	reviewed	p.Q342*	0.297	377	0%	224	21.9%	8	0%	-	-	-	HMMPfam_Nckap1
NCKAP1L	3071	genome.wustl.edu	37	12	54917740	54917740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005337.4	+1	reviewed	p.R719I	1.000	389	0%	235	11.5%	13	0%	possibly_damaging(0.852)	deleterious(0.02)	deleterious(0.711)	HMMPfam_Nckap1
PDE1B	5153	genome.wustl.edu	37	12	54964077	54964077	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000924.3	+1	validated	p.D177V	1.000	442	0%	235	18.3%	1	100%	benign(0.289)	deleterious(0.01)	deleterious(0.495)	superfamily_SSF109604
PHC1P1	653441	genome.wustl.edu	37	12	55806343	55806343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326184	-1	known	p.Q726H	1.000	174	0.6%	93	30.1%	8	0%	-	-	-	NULL
ITGA7	3679	genome.wustl.edu	37	12	56091510	56091510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.G464S	1.000	243	0%	136	31.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGA7	3679	genome.wustl.edu	37	12	56091736	56091736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.A427T	0.001	738	0.1%	400	24%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGA7	3679	genome.wustl.edu	37	12	56094911	56094911	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.Q148*	1.000	280	0%	128	30.5%	3	0%	-	-	-	superfamily_Integrin alpha N-terminal domain
BLOC1S1	2647	genome.wustl.edu	37	12	56113369	56113369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001487.2	+1	validated	p.G118	0.955	102	0%	34	26.5%	113	35.3%	-	-	-	HMMPfam_GCN5L1
DGKA	1606	genome.wustl.edu	37	12	56332729	56332729	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001345.4	+1	reviewed	p.R144*	1.000	249	0.4%	136	24.3%	4	0%	-	-	-	superfamily_EF-hand
DGKA	1606	genome.wustl.edu	37	12	56334409	56334409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001345.4	+1	reviewed	p.I307T	1.000	195	0%	97	12.4%	17	5.8%	benign(0.125)	deleterious(0.04)	neutral(0.359)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
DGKA	1606	genome.wustl.edu	37	12	56345564	56345564	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001345.4	+1	reviewed	p.G528	0.985	256	0%	122	23.8%	16	12.5%	-	-	-	HMMPfam_DAGK_acc,HMMSmart_SM00045
RAB5B	5869	genome.wustl.edu	37	12	56384571	56384571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002868.2	+1	validated	p.R141C	1.000	477	0%	262	14.5%	120	18.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ERBB3	2065	genome.wustl.edu	37	12	56491014	56491014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.K820N	1.000	127	0%	79	29.1%	32	3.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZC3H10	84872	genome.wustl.edu	37	12	56515637	56515637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032786.1	+1	provisional	p.A431T	1.000	99	0%	46	37%	10	40%	benign(0.03)	tolerated(0.28)	neutral(0.033)	NULL
MYL6B	140465	genome.wustl.edu	37	12	56548841	56548841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002475.3	+1	reviewed	p.F69I	1.000	295	0%	109	30.3%	37	45.9%	possibly_damaging(0.522)	deleterious(0.02)	deleterious(0.559)	HMMSmart_EFh,superfamily_SSF47473
SMARCC2	6601	genome.wustl.edu	37	12	56561850	56561850	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003075.3	-1	reviewed	p.R917	0.999	355	0%	150	28%	41	51.2%	-	-	-	NULL
SMARCC2	6601	genome.wustl.edu	37	12	56571869	56571869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003075.3	-1	reviewed	p.A440D	1.000	94	0%	48	35.4%	49	40.8%	probably_damaging(0.988)	tolerated(0.59)	neutral(0.442)	HMMPfam_SWIRM
SMARCC2	6601	genome.wustl.edu	37	12	56581037	56581037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003075.3	-1	reviewed	p.Q55H	1.000	370	0%	164	29.3%	29	41.3%	probably_damaging(0.99)	tolerated(0.13)	deleterious(0.694)	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56641907	56641907	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.T626	0.473	130	0%	88	31.8%	9	44.4%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKRD52	283373	genome.wustl.edu	37	12	56645970	56645970	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.D500	1.000	179	0%	87	26.4%	10	40%	-	-	-	HMMPfam_Ank,HMMSmart_ANK
COQ10A	93058	genome.wustl.edu	37	12	56662966	56662966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144576.3	+1	validated	p.E135D	0.997	174	0%	100	14%	4	0%	possibly_damaging(0.917)	tolerated(0.24)	neutral(0.405)	HMMPfam_Polyketide_cyc
COQ10A	93058	genome.wustl.edu	37	12	56662972	56662972	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144576.3	+1	validated	p.G137	0.991	173	0%	95	13.7%	5	0%	-	-	-	HMMPfam_Polyketide_cyc
CS	1431	genome.wustl.edu	37	12	56676252	56676252	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004077.2	-1	reviewed	p.N180	1.000	132	0%	80	26.3%	182	46.1%	-	-	-	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
CS	1431	genome.wustl.edu	37	12	56677608	56677608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004077.2	-1	reviewed	p.V79I	1.000	90	0%	50	16%	106	14.1%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
PAN2	9924	genome.wustl.edu	37	12	56720582	56720582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127460.2	-1	reviewed	p.P361T	1.000	282	0%	151	29.8%	6	66.6%	benign(0.137)	deleterious(0.02)	neutral(0.395)	NULL
PAN2	9924	genome.wustl.edu	37	12	56720671	56720671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127460.2	-1	reviewed	p.P331H	1.000	352	0%	156	27.6%	12	66.6%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_WD40 repeat-like
IL23A	51561	genome.wustl.edu	37	12	56732968	56732968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016584.2	+1	reviewed	p.A47V	0.916	65	0%	29	27.6%	1	0%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	HMMPfam_IL6,superfamily_4_helix_cytokine
APOF	319	genome.wustl.edu	37	12	56755043	56755043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001638.2	-1	reviewed	p.D316A	0.000	164	0%	92	29.3%	0	-	benign(0.075)	tolerated(0.34)	neutral(0.028)	NULL
APOF	319	genome.wustl.edu	37	12	56755333	56755333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001638.2	-1	reviewed	p.I219M	0.963	134	0%	69	29%	0	-	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	NULL
APOF	319	genome.wustl.edu	37	12	56755371	56755371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001638.2	-1	reviewed	p.L207M	0.071	101	0%	53	45.3%	0	-	possibly_damaging(0.815)	tolerated(0.08)	deleterious(0.607)	NULL
TIMELESS	8914	genome.wustl.edu	37	12	56826189	56826189	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003920.3	-1	validated	p.H217	0.719	166	0.6%	99	19.2%	22	22.7%	-	-	-	HMMPfam_TIMELESS
GLS2	27165	genome.wustl.edu	37	12	56865932	56865932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013267.2	-1	reviewed	p.R520H	1.000	378	0%	162	27.2%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GLS2	27165	genome.wustl.edu	37	12	56872043	56872043	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486896	-1	known	p.W168*	1.000	101	0%	44	18.2%	4	0%	-	-	-	NULL
RBMS2	5939	genome.wustl.edu	37	12	56963689	56963689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002898.3	+1	reviewed	p.G100D	1.000	323	0%	195	27.7%	11	18.1%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RBMS2	5939	genome.wustl.edu	37	12	56965565	56965565	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002898.3	+1	reviewed	p.K156N	1.000	234	0%	144	23.6%	5	60%	probably_damaging(0.995)	tolerated(0.12)	deleterious(0.718)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
BAZ2A	11176	genome.wustl.edu	37	12	57006024	57006024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.S383I	1.000	89	0%	45	24.4%	29	68.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NACA	4666	genome.wustl.edu	37	12	57112749	57112749	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.S855	0.116	44	0%	20	25%	2	0%	-	-	-	NULL
GPR182	11318	genome.wustl.edu	37	12	57389885	57389885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007264.3	+1	reviewed	p.L298F	0.998	588	0.2%	334	21.9%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_7tm_1,superfamily_SSF81321
NAB2	4665	genome.wustl.edu	37	12	57486740	57486740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005967.3	+1	reviewed	p.L378M	0.998	237	0%	124	29%	8	37.5%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
STAT6	6778	genome.wustl.edu	37	12	57490408	57490408	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003153.4	-1	reviewed	p.Q831*	1.000	159	0%	67	37.3%	26	30.7%	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57593141	57593141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.P3275S	1.000	168	0%	99	38.4%	16	43.7%	probably_damaging(0.973)	tolerated(0.57)	neutral(0.421)	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
STAC3	246329	genome.wustl.edu	37	12	57642900	57642900	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145064.1	-1	provisional	p.N86	0.994	196	0%	120	40%	3	66.6%	-	-	-	superfamily_Cysteine-rich domain
R3HDM2	22864	genome.wustl.edu	37	12	57663729	57663729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014925.3	-1	validated	p.G451C	1.000	220	0%	127	26%	47	48.9%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
INHBC	3626	genome.wustl.edu	37	12	57843362	57843362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005538.2	+1	reviewed	p.A206T	0.371	330	0.3%	171	22.2%	0	-	benign(0.043)	tolerated(0.31)	neutral(0.029)	NULL
INHBE	83729	genome.wustl.edu	37	12	57849560	57849560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031479.3	+1	validated	p.P81S	0.092	86	0%	41	43.9%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
ARHGAP9	64333	genome.wustl.edu	37	12	57872529	57872529	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032496.2	-1	reviewed	p.F110V	0.005	97	0%	51	27.5%	2	0%	benign(0.006)	tolerated(0.63)	neutral(0.004)	NULL
KIF5A	3798	genome.wustl.edu	37	12	57960923	57960923	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.R172	1.000	311	0%	198	32.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DTX3	196403	genome.wustl.edu	37	12	58002333	58002333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413885	+1	known	p.P264T	0.929	134	0%	74	32.4%	13	23%	benign(0.003)	tolerated(0.44)	neutral(0.013)	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58014142	58014142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133489.2	+1	validated	p.L47M	1.000	1625	0%	758	26.9%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
OS9	10956	genome.wustl.edu	37	12	58112087	58112087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006812.3	+1	reviewed	p.Q431H	0.600	229	0.4%	140	26.4%	160	36.8%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CDK4	1019	genome.wustl.edu	37	12	58143260	58143260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312990	-1	known	p.P103L	0.999	264	0%	153	26.8%	195	38.4%	possibly_damaging(0.824)	tolerated(0.15)	deleterious(0.553)	NULL
CYP27B1	1594	genome.wustl.edu	37	12	58157496	58157496	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000785.3	-1	reviewed	p.G437	0.000	95	0%	49	16.3%	5	40%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
METTL21B	25895	genome.wustl.edu	37	12	58174096	58174096	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015433.2	+1	validated	p.V116	0.944	97	1%	69	33.3%	10	30%	-	-	-	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
METTL21B	25895	genome.wustl.edu	37	12	58174124	58174124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015433.2	+1	validated	p.A126T	1.000	101	1%	58	20.7%	10	70%	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TSFM	10102	genome.wustl.edu	37	12	58190114	58190114	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005726.5	+1	reviewed	p.T242	0.011	41	0%	29	13.8%	71	43.6%	-	-	-	HMMPfam_EF_TS,superfamily_Elongation factor Ts (EF-Ts) dimerisation domain
AVIL	10677	genome.wustl.edu	37	12	58201228	58201228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006576.3	-1	reviewed	p.Q459H	1.000	199	0%	107	37.4%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins
LRIG3	121227	genome.wustl.edu	37	12	59270371	59270371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153377.3	-1	provisional	p.P851S	1.000	205	0%	85	28.2%	20	30%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRIG3	121227	genome.wustl.edu	37	12	59308082	59308082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153377.3	-1	provisional	p.A91V	1.000	308	0%	179	10.6%	5	0%	benign(0.002)	tolerated(0.6)	neutral(0.004)	HMMSmart_SM00369
SLC16A7	9194	genome.wustl.edu	37	12	60098690	60098690	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004731.3	+1	provisional	p.F36	1.000	128	0%	93	33.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
FAM19A2	338811	genome.wustl.edu	37	12	62147443	62147443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178539.3	-1	reviewed	p.G115V	1.000	228	0.4%	250	28.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MON2	23041	genome.wustl.edu	37	12	62926268	62926268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.A484V	1.000	308	0%	235	28.1%	7	28.5%	benign(0.007)	tolerated(0.24)	neutral(0.037)	NULL
MON2	23041	genome.wustl.edu	37	12	62940702	62940702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015026.2	+1	validated	p.P868L	1.000	101	0%	77	24.7%	7	57.1%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_DUF1981,superfamily_ARM-type_fold
AVPR1A	552	genome.wustl.edu	37	12	63543674	63543674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000706.3	-1	reviewed	p.V315I	0.999	180	0%	95	21.1%	0	-	benign(0.408)	deleterious(0.01)	deleterious(0.538)	HMMPfam_7tm_1,superfamily_SSF81321
DPY19L2	283417	genome.wustl.edu	37	12	64061883	64061883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173812.4	-1	validated	p.Q97H	0.000	184	0%	99	12.1%	2	0%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64410742	64410742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.A147T	1.000	169	1.2%	110	30.9%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
SRGAP1	57522	genome.wustl.edu	37	12	64509594	64509594	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.C715	0.930	108	0.9%	78	17.9%	3	0%	-	-	-	NULL
C12orf66	144577	genome.wustl.edu	37	12	64588303	64588303	+	Silent	SNP	C	C	T	rs185163970	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152440.4	-1	validated	p.A219	1.000	247	0%	125	28.8%	5	20%	-	-	-	HMMPfam_DUF2003
XPOT	11260	genome.wustl.edu	37	12	64810487	64810487	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007235.3	+1	reviewed	p.H51	1.000	150	0%	82	26.8%	61	54%	-	-	-	superfamily_ARM-type_fold
LEMD3	23592	genome.wustl.edu	37	12	65639990	65639990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014319.4	+1	reviewed	p.R874H	1.000	211	0%	156	26.9%	18	27.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
MSRB3	253827	genome.wustl.edu	37	12	65847599	65847599	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198080.2	+1	validated	p.C135*	1.000	371	0%	208	28.4%	8	0%	-	-	-	HMMPfam_SelR,superfamily_Mss4_like
IRAK3	11213	genome.wustl.edu	37	12	66638321	66638321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007199.2	+1	reviewed	p.A315S	1.000	288	0%	176	29.5%	1	0%	possibly_damaging(0.799)	deleterious(0.01)	deleterious(0.707)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CAND1	55832	genome.wustl.edu	37	12	67703958	67703958	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018448.3	+1	validated	p.T1074	0.556	289	0%	158	32.3%	99	36.3%	-	-	-	HMMPfam_TIP120,superfamily_ARM repeat
DYRK2	8445	genome.wustl.edu	37	12	68051542	68051542	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006482.2	+1	reviewed	p.I285	1.000	528	0.2%	308	26.9%	27	51.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RAP1B	5908	genome.wustl.edu	37	12	69044198	69044198	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010942.1	+1	validated	p.G26*	1.000	110	0%	79	27.8%	60	26.6%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAP1B	5908	genome.wustl.edu	37	12	69044218	69044218	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010942.1	+1	validated	p.Y32	0.998	121	0%	79	19%	53	54.7%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
NUP107	57122	genome.wustl.edu	37	12	69103019	69103019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020401.2	+1	reviewed	p.A244D	0.759	151	0.7%	111	37.8%	34	32.3%	benign(0.005)	tolerated(0.32)	neutral(0.024)	HMMPfam_Nup84_Nup100
NUP107	57122	genome.wustl.edu	37	12	69115884	69115884	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020401.2	+1	reviewed	p.N486	1.000	229	0%	130	28.5%	32	53.1%	-	-	-	HMMPfam_Nup84_Nup100
SLC35E3	55508	genome.wustl.edu	37	12	69140401	69140401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018656.2	+1	validated	p.L82I	1.000	145	0.7%	84	23.8%	20	40%	possibly_damaging(0.592)	tolerated(0.08)	deleterious(0.504)	NULL
CPSF6	11052	genome.wustl.edu	37	12	69650509	69650509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007007.2	+1	validated	p.S136Y	1.000	275	0.4%	197	27.4%	78	35.8%	unknown(0)	deleterious(0)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CCT2	10576	genome.wustl.edu	37	12	69985880	69985880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.R231*	0.999	156	0.6%	111	27%	123	2.4%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CCT2	10576	genome.wustl.edu	37	12	69993775	69993775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.A523V	1.000	194	0.5%	112	26.8%	213	9.8%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
RAB3IP	117177	genome.wustl.edu	37	12	70194051	70194051	+	Silent	SNP	G	G	A	rs138194807	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175623.2	+1	validated	p.T333	0.409	168	0%	136	27.2%	19	42.1%	-	-	-	NULL
PTPRB	5787	genome.wustl.edu	37	12	70956726	70956726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.S1356R	1.000	412	0%	274	23.7%	6	16.6%	benign(0.007)	tolerated(0.5)	neutral(0.010)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70960253	70960253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.G1289D	1.000	187	0%	135	37%	4	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRB	5787	genome.wustl.edu	37	12	70975053	70975053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.A781T	0.071	255	0%	156	30.1%	3	66.6%	benign(0.001)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRR	5801	genome.wustl.edu	37	12	71095018	71095018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002849.2	-1	reviewed	p.K365E	1.000	278	0.4%	189	12.7%	0	-	benign(0.001)	tolerated(0.42)	neutral(0.014)	superfamily_(Phosphotyrosine protein) phosphatases II
PTPRR	5801	genome.wustl.edu	37	12	71095097	71095097	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002849.2	-1	reviewed	p.G338	0.935	234	0%	163	11%	0	-	-	-	-	NULL
TSPAN8	7103	genome.wustl.edu	37	12	71533509	71533509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004616.2	-1	reviewed	p.S81R	0.741	1111	0.1%	729	29.8%	79	46.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Tetraspannin,PatternScan_TM4_1
ZFC3H1	196441	genome.wustl.edu	37	12	72009011	72009011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.V1744I	1.000	225	0%	173	18.5%	22	18.1%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72028540	72028540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144982.4	-1	validated	p.E768D	1.000	128	0%	86	30.2%	2	50%	benign(0.016)	tolerated(0.06)	neutral(0.323)	NULL
THAP2	83591	genome.wustl.edu	37	12	72068044	72068044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031435.2	+1	provisional	p.V45M	1.000	126	0%	101	31.7%	11	36.3%	probably_damaging(0.96)	tolerated(0.12)	deleterious(0.663)	HMMPfam_THAP,HMMSmart_SM00692
THAP2	83591	genome.wustl.edu	37	12	72070524	72070524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031435.2	+1	provisional	p.P108Q	1.000	205	0%	142	38.7%	5	20%	possibly_damaging(0.833)	deleterious(0)	deleterious(0.762)	NULL
TRHDE	29953	genome.wustl.edu	37	12	72680629	72680629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013381.2	+1	reviewed	p.W316C	1.000	290	0%	177	20.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M1,superfamily_SSF63737
BBS10	79738	genome.wustl.edu	37	12	76741019	76741019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024685.3	-1	reviewed	p.R249H	1.000	162	0%	108	35.2%	7	28.5%	benign(0.293)	tolerated(0.13)	neutral(0.343)	superfamily_GroEL-ATPase
OSBPL8	114882	genome.wustl.edu	37	12	76749753	76749753	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020841.4	-1	reviewed	p.T862	0.003	144	0%	87	27.6%	18	61.1%	-	-	-	NULL
OSBPL8	114882	genome.wustl.edu	37	12	76769138	76769138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020841.4	-1	reviewed	p.G581V	1.000	207	0%	145	30.3%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Oxysterol_BP
ZDHHC17	23390	genome.wustl.edu	37	12	77244672	77244672	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.C602	1.000	293	0%	185	26.5%	7	42.8%	-	-	-	NULL
E2F7	144455	genome.wustl.edu	37	12	77417807	77417807	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203394.2	-1	validated	p.G908	0.000	240	0%	117	21.4%	8	75%	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78415621	78415621	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.Q668*	1.000	400	0%	374	26.7%	0	-	-	-	-	NULL
NAV3	89795	genome.wustl.edu	37	12	78444771	78444771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.R787Q	0.991	184	0%	85	32.9%	0	-	possibly_damaging(0.827)	deleterious(0.02)	deleterious(0.697)	NULL
NAV3	89795	genome.wustl.edu	37	12	78552998	78552998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.A1601S	1.000	290	0%	231	25.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80735747	80735747	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000298820	+1	known	p.R124Q	0.998	70	0%	64	10.9%	0	-	-	-	-	HMMPfam_VWD
MYF6	4618	genome.wustl.edu	37	12	81102382	81102382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002469.2	+1	reviewed	p.T200M	0.393	67	0%	35	20%	0	-	benign(0.117)	deleterious(0.01)	neutral(0.415)	NULL
MYF5	4617	genome.wustl.edu	37	12	81112748	81112748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005593.2	+1	validated	p.S229F	0.999	214	0%	116	29.3%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
LIN7A	8825	genome.wustl.edu	37	12	81205324	81205324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004664.2	-1	validated	p.R208C	1.000	65	0%	42	26.2%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PDZ domain-like
LIN7A	8825	genome.wustl.edu	37	12	81205382	81205382	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004664.2	-1	validated	p.Y188	1.000	122	0%	79	26.6%	9	33.3%	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
ACSS3	79611	genome.wustl.edu	37	12	81532944	81532944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024560.2	+1	validated	p.E227G	1.000	290	0%	176	29%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PPFIA2	8499	genome.wustl.edu	37	12	81732958	81732958	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	e19+1	1.000	370	0.3%	342	29.2%	0	-	-	-	-	-
PPFIA2	8499	genome.wustl.edu	37	12	81769671	81769671	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.K345	1.000	218	0%	192	20.3%	0	-	-	-	-	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85277570	85277570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018057.5	-1	validated	p.S275F	0.000	159	0%	110	31.8%	1	0%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
SLC6A15	55117	genome.wustl.edu	37	12	85285758	85285758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182767.4	-1	validated	p.D48Y	1.000	478	0%	297	28.3%	0	-	possibly_damaging(0.816)	deleterious(0.02)	deleterious(0.692)	NULL
TSPAN19	144448	genome.wustl.edu	37	12	85411252	85411252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100917.1	-1	validated	p.N193D	1.000	79	0%	69	27.5%	0	-	benign(0.101)	tolerated(0.14)	neutral(0.257)	superfamily_Tetraspanin,HMMPfam_Tetraspannin
LRRIQ1	84125	genome.wustl.edu	37	12	85449801	85449801	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.L410	0.000	405	0%	319	32.3%	0	-	-	-	-	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85450583	85450583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.R671I	0.000	500	0.2%	323	28.2%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_RNI-like
LRRIQ1	84125	genome.wustl.edu	37	12	85521794	85521794	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.A1398T	1.000	258	0%	133	27.1%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ALX1	8092	genome.wustl.edu	37	12	85674246	85674246	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006982.2	+1	reviewed	p.S69	0.996	26	0%	11	36.4%	0	-	-	-	-	NULL
MGAT4C	25834	genome.wustl.edu	37	12	86373386	86373386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013244.3	-1	validated	p.P373H	1.000	71	0%	48	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP290	80184	genome.wustl.edu	37	12	88477655	88477655	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.S1594I	1.000	61	0%	35	40%	9	55.5%	benign(0.054)	tolerated(0.14)	neutral(0.253)	NULL
ATP2B1	490	genome.wustl.edu	37	12	90021464	90021464	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001682.2	-1	reviewed	p.R320C	1.000	263	0%	184	22.8%	20	20%	benign(0.015)	deleterious(0.02)	neutral(0.384)	HMMPfam_E1-E2_ATPase,superfamily_SSF81665
PLXNC1	10154	genome.wustl.edu	37	12	94654592	94654592	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.S1142	0.067	140	0%	69	29%	2	0%	-	-	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
TMCC3	57458	genome.wustl.edu	37	12	94976014	94976014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020698.2	-1	validated	p.A127T	0.987	225	0%	131	11.5%	1	0%	possibly_damaging(0.577)	tolerated(0.2)	neutral(0.247)	HMMPfam_Tmemb_cc2
TMCC3	57458	genome.wustl.edu	37	12	94976070	94976070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020698.2	-1	validated	p.A108V	0.993	202	0%	141	27%	0	-	benign(0.084)	tolerated(0.55)	neutral(0.013)	HMMPfam_Tmemb_cc2
FGD6	55785	genome.wustl.edu	37	12	95602881	95602881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018351.3	-1	validated	p.L727I	0.928	264	0%	190	31.1%	1	100%	possibly_damaging(0.717)	deleterious(0)	deleterious(0.704)	NULL
METAP2	10988	genome.wustl.edu	37	12	95889828	95889828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006838.3	+1	reviewed	p.D274G	1.000	714	0%	491	27.5%	84	35.7%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
USP44	84101	genome.wustl.edu	37	12	95926990	95926990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042403.1	-1	validated	p.R348I	0.988	379	0%	207	10.6%	0	-	benign(0.394)	deleterious(0.04)	deleterious(0.475)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP44	84101	genome.wustl.edu	37	12	95927102	95927102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042403.1	-1	validated	p.A311T	1.000	234	0.9%	205	32.2%	0	-	benign(0.371)	tolerated(0.53)	neutral(0.126)	HMMPfam_UCH,superfamily_Cysteine proteinases
HAL	3034	genome.wustl.edu	37	12	96384172	96384172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002108.2	-1	reviewed	p.Y285C	1.000	323	0%	184	13%	0	-	benign(0.198)	deleterious(0.01)	neutral(0.425)	HMMPfam_PAL,superfamily_L-Aspartase-like
C12orf63	374467	genome.wustl.edu	37	12	97087499	97087499	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	e11-1	0.993	323	0%	293	10.9%	0	-	-	-	-	-
NEDD1	121441	genome.wustl.edu	37	12	97328883	97328883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135175.1	+1	validated	p.A214S	1.000	462	0%	306	10.5%	16	18.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NEDD1	121441	genome.wustl.edu	37	12	97345270	97345270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135175.1	+1	validated	p.M631I	1.000	193	0%	160	28.1%	13	46.1%	benign(0)	tolerated(1)	-	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98995045	98995045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005888.3	+1	reviewed	p.R305I	1.000	177	0%	78	12.8%	786	18.7%	possibly_damaging(0.815)	tolerated(0.05)	deleterious(0.653)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
APAF1	317	genome.wustl.edu	37	12	99074073	99074073	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181861.1	+1	reviewed	p.G647*	1.000	79	0%	63	27%	3	33.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ANKS1B	56899	genome.wustl.edu	37	12	99201671	99201671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181670.2	-1	validated	p.T256M	1.000	144	0%	89	27%	0	-	benign(0.021)	tolerated(0.08)	neutral(0.301)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100478260	100478260	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.Q428*	1.000	385	0%	221	25.3%	15	13.3%	-	-	-	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100561181	100561181	+	RNA	SNP	G	G	A	rs138181889	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024261.1	-1	validated	NULL	0.157	33	0%	17	35.3%	2	100%	-	-	-	-
GOLGA2P5	55592	genome.wustl.edu	37	12	100562921	100562923	+	RNA	DEL	TTT	TTT	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024261.1	-1	validated	NULL	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	-
DEPDC4	120863	genome.wustl.edu	37	12	100656106	100656106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152317.2	-1	provisional	p.N212K	0.026	307	0%	180	25.6%	2	100%	benign(0.016)	tolerated(0.43)	neutral(0.014)	NULL
SLC17A8	246213	genome.wustl.edu	37	12	100797922	100797922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139319.2	+1	reviewed	p.A387D	1.000	179	0%	129	38%	0	-	probably_damaging(0.996)	tolerated(0.53)	deleterious(0.469)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
GAS2L3	283431	genome.wustl.edu	37	12	100994191	100994191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174942.1	+1	provisional	p.P17H	1.000	413	0%	272	25%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GAS2L3	283431	genome.wustl.edu	37	12	100995514	100995514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174942.1	+1	provisional	p.N96D	0.008	531	0%	368	23.4%	5	60%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SLC5A8	160728	genome.wustl.edu	37	12	101587545	101587545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145913.3	-1	validated	p.A184S	1.000	287	0%	205	32.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
MYBPC1	4604	genome.wustl.edu	37	12	102025861	102025861	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.C167	0.874	134	0%	67	28.4%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MYBPC1	4604	genome.wustl.edu	37	12	102061589	102061589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.K812N	1.000	146	0%	87	32.2%	0	-	benign(0.007)	tolerated(0.29)	neutral(0.029)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DRAM1	55332	genome.wustl.edu	37	12	102314996	102314996	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018370.2	+1	reviewed	p.S225	0.923	352	0.3%	238	29.8%	16	37.5%	-	-	-	HMMPfam_Frag1
ASCL1	429	genome.wustl.edu	37	12	103352411	103352411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004316.3	+1	reviewed	p.R130H	1.000	38	0.000	9	0.444	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
STAB2	55576	genome.wustl.edu	37	12	104083652	104083652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.A1025V	0.000	168	0%	102	29.4%	0	-	benign(0.061)	tolerated(0.06)	neutral(0.327)	HMMPfam_Fasciclin,superfamily_BIgH3_FAS1
TDG	6996	genome.wustl.edu	37	12	104380859	104380859	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003211.4	+1	reviewed	p.S408	0.008	356	0.3%	188	19.7%	31	41.9%	-	-	-	NULL
NFYB	4801	genome.wustl.edu	37	12	104517081	104517081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006166.3	-1	reviewed	p.I118V	1.000	155	0%	106	25.5%	44	31.8%	benign(0.093)	tolerated(0.19)	neutral(0.057)	HMMPfam_CBFD_NFYB_HMF,superfamily_Histone-fold
EID3	493861	genome.wustl.edu	37	12	104697980	104697980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008394.1	+1	provisional	p.A90T	0.859	164	0%	90	28.9%	0	-	benign(0.284)	deleterious(0.02)	deleterious(0.470)	HMMPfam_Nse4
TXNRD1	7296	genome.wustl.edu	37	12	104713303	104713303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429002	+1	known	p.A314V	1.000	57	0%	36	22.2%	50	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
TXNRD1	7296	genome.wustl.edu	37	12	104715027	104715027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429002	+1	known	p.A387V	1.000	351	0%	203	12.3%	38	31.5%	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
CHST11	50515	genome.wustl.edu	37	12	105150997	105150997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018413.5	+1	validated	p.A159T	0.968	179	0%	84	26.2%	15	0%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Sulfotransfer_2
ENSG00000179821	0	genome.wustl.edu	37	12	105370934	105370934	+	Silent	SNP	C	C	T	rs138008541	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312876	-1	known	p.T285	0.943	24	0%	13	46.2%	0	-	-	-	-	HMMPfam_Filament
ENSG00000179821	0	genome.wustl.edu	37	12	105371021	105371021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312876	-1	known	p.E256D	0.946	32	0%	22	18.2%	0	-	-	-	-	HMMPfam_Filament
ALDH1L2	160428	genome.wustl.edu	37	12	105433542	105433542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034173.3	-1	reviewed	p.R665H	1.000	234	0%	159	20.8%	2	0%	probably_damaging(0.965)	deleterious(0.04)	deleterious(0.756)	HMMPfam_Aldedh,superfamily_ALDH-like
KIAA1033	23325	genome.wustl.edu	37	12	105550510	105550510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015275.1	+1	validated	p.A922D	1.000	275	0%	200	34%	18	27.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APPL2	55198	genome.wustl.edu	37	12	105570725	105570725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018171.3	-1	validated	p.R581C	0.188	370	0%	229	34.1%	24	66.6%	benign(0.352)	deleterious(0)	deleterious(0.556)	HMMPfam_PID,superfamily_SSF50729
APPL2	55198	genome.wustl.edu	37	12	105589095	105589095	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018171.3	-1	validated	p.L395	0.011	101	0%	64	31.2%	38	50%	-	-	-	NULL
LOC341378	341378	genome.wustl.edu	37	12	106565222	106565222	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715424.1	+1	model	p.V22	0.081	222	0%	165	31.5%	0	-	-	-	-	NULL
CKAP4	10970	genome.wustl.edu	37	12	106633075	106633075	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006825.3	-1	validated	p.T512	0.040	105	1%	84	35.7%	154	39.6%	-	-	-	NULL
CKAP4	10970	genome.wustl.edu	37	12	106633236	106633236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006825.3	-1	validated	p.G459R	0.180	64	0%	37	24.3%	124	54%	probably_damaging(0.99)	tolerated(0.58)	neutral(0.447)	NULL
CKAP4	10970	genome.wustl.edu	37	12	106633639	106633639	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006825.3	-1	validated	p.E324D	0.996	97	0%	54	27.8%	153	46.4%	probably_damaging(0.998)	tolerated(0.35)	deleterious(0.495)	NULL
TCP11L2	255394	genome.wustl.edu	37	12	106708223	106708223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.A82D	1.000	169	0%	96	25%	3	33.3%	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	HMMPfam_Tcp11
TCP11L2	255394	genome.wustl.edu	37	12	106717316	106717316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.Q222*	0.999	129	0%	65	38.5%	2	0%	-	-	-	HMMPfam_Tcp11
TCP11L2	255394	genome.wustl.edu	37	12	106717368	106717368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.R239H	1.000	171	0%	100	27%	3	100%	benign(0.004)	tolerated(0.15)	neutral(0.241)	HMMPfam_Tcp11
TCP11L2	255394	genome.wustl.edu	37	12	106734621	106734621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152772.1	+1	provisional	p.E387G	1.000	251	0%	150	32%	6	16.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Tcp11
POLR3B	55703	genome.wustl.edu	37	12	106821137	106821137	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	e13+1	0.999	350	0%	294	23.5%	0	-	-	-	-	-
RIC8B	55188	genome.wustl.edu	37	12	107236492	107236492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018157.2	+1	validated	p.A321V	0.966	355	0%	207	27.1%	9	33.3%	benign(0.013)	tolerated(1)	neutral(0.001)	superfamily_ARM-type_fold,HMMPfam_Ric8
CRY1	1407	genome.wustl.edu	37	12	107393495	107393495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004075.3	-1	validated	p.P324H	1.000	134	0%	84	29.8%	23	52.1%	possibly_damaging(0.596)	deleterious(0.04)	deleterious(0.555)	HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain
BTBD11	121551	genome.wustl.edu	37	12	108006600	108006600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018072.1	+1	validated	p.A618V	1.000	23	0%	18	22.2%	0	-	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PRDM4	11108	genome.wustl.edu	37	12	108134871	108134871	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.C592*	1.000	587	0.2%	361	27.7%	13	15.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRDM4	11108	genome.wustl.edu	37	12	108145414	108145414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.A302S	1.000	112	0%	62	14.5%	28	10.7%	possibly_damaging(0.811)	deleterious(0.02)	deleterious(0.689)	NULL
PRDM4	11108	genome.wustl.edu	37	12	108147763	108147763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012406.3	-1	reviewed	p.Y90C	1.000	144	0%	89	20.2%	10	60%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
SART3	9733	genome.wustl.edu	37	12	108929177	108929177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014706.3	-1	reviewed	p.A505V	1.000	394	0%	223	31.8%	42	47.6%	possibly_damaging(0.446)	tolerated(0.06)	deleterious(0.469)	HMMSmart_SM00386,superfamily_TPR-like
CORO1C	23603	genome.wustl.edu	37	12	109042548	109042548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014325.2	-1	reviewed	p.G380C	1.000	142	0%	77	24.7%	75	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1900
SSH1	54434	genome.wustl.edu	37	12	109198899	109198899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.D296G	1.000	149	0%	76	25%	8	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_DEK_C,superfamily_DEK C-terminal domain
SSH1	54434	genome.wustl.edu	37	12	109217102	109217102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018984.3	-1	validated	p.A49V	1.000	17	0.000	9	0.444	6	33.3%	possibly_damaging(0.906)	tolerated(0.09)	deleterious(0.656)	NULL
SVOP	55530	genome.wustl.edu	37	12	109313533	109313533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018711.2	-1	validated	p.P335L	1.000	44	0%	28	25%	0	-	probably_damaging(0.995)	tolerated(0.17)	deleterious(0.516)	NULL
USP30	84749	genome.wustl.edu	37	12	109522831	109522831	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032663.3	+1	validated	p.T414	0.009	598	0%	291	31.3%	16	43.7%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ACACB	32	genome.wustl.edu	37	12	109684135	109684135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.R1818Q	1.000	144	0%	65	27.7%	1	100%	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
KCTD10	83892	genome.wustl.edu	37	12	109898568	109898568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031954.3	-1	provisional	p.I87T	1.000	189	0%	93	31.2%	31	35.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
UBE3B	89910	genome.wustl.edu	37	12	109921751	109921751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.L83	1.000	255	0%	127	23.6%	13	61.5%	-	-	-	NULL
UBE3B	89910	genome.wustl.edu	37	12	109926417	109926417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.L163P	1.000	758	0%	458	15.9%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UBE3B	89910	genome.wustl.edu	37	12	109928915	109928915	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.A232	0.815	175	0%	128	18.8%	15	26.6%	-	-	-	NULL
MVK	4598	genome.wustl.edu	37	12	110013833	110013833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000431.2	+1	reviewed	p.T37A	1.000	86	0%	58	24.1%	20	45%	possibly_damaging(0.94)	tolerated(0.09)	deleterious(0.681)	superfamily_Ribosomal protein S5 domain 2-like
MVK	4598	genome.wustl.edu	37	12	110013888	110013888	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000431.2	+1	reviewed	p.N55T	1.000	65	0%	46	23.9%	22	36.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ribosomal protein S5 domain 2-like
TRPV4	59341	genome.wustl.edu	37	12	110226377	110226377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021625.4	-1	reviewed	p.G679D	1.000	101	1%	47	27.7%	3	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ion_trans
GIT2	9815	genome.wustl.edu	37	12	110429535	110429535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057169.3	-1	reviewed	p.T28M	0.947	97	0%	54	20.4%	6	50%	possibly_damaging(0.579)	deleterious(0.01)	deleterious(0.605)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ARPC3	10094	genome.wustl.edu	37	12	110874944	110874944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005719.2	-1	reviewed	p.R66M	1.000	174	0%	104	21.2%	457	50.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_P21-Arc,superfamily_Arp2/3 complex 21 kDa subunit ARPC3
RAD9B	144715	genome.wustl.edu	37	12	110943551	110943551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152442.3	+1	validated	p.H83Y	0.000	55	0%	43	39.5%	0	-	benign(0.173)	deleterious(0.02)	neutral(0.399)	HMMPfam_Rad9,superfamily_DNA clamp
PPP1CC	5501	genome.wustl.edu	37	12	111169650	111169650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002710.2	-1	validated	p.L38M	0.999	195	0.5%	92	13%	117	17.9%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
CCDC63	160762	genome.wustl.edu	37	12	111336915	111336915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152591.1	+1	provisional	p.L443P	0.885	145	0%	86	31.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ALDH2	217	genome.wustl.edu	37	12	112235947	112235947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000690.2	+1	reviewed	p.K383N	0.999	42	0%	16	25%	34	20.5%	benign(0.111)	tolerated(0.11)	neutral(0.280)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
NAA25	80018	genome.wustl.edu	37	12	112516537	112516537	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.S162	0.160	232	0%	121	31.4%	9	44.4%	-	-	-	superfamily_TPR-like
PTPN11	5781	genome.wustl.edu	37	12	112919935	112919935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002834.3	+1	reviewed	p.R384C	1.000	148	0%	108	27.8%	11	72.7%	benign(0.01)	tolerated(0.08)	neutral(0.300)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
OAS2	4939	genome.wustl.edu	37	12	113435478	113435478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016817.2	+1	reviewed	p.L261M	0.163	293	0.3%	175	24.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
IQCD	115811	genome.wustl.edu	37	12	113633535	113633535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138451.1	-1	provisional	p.R297C	1.000	156	0%	78	41%	6	66.6%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMSmart_IQ
TPCN1	53373	genome.wustl.edu	37	12	113711423	113711423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143819.1	+1	validated	p.V370I	0.996	139	0%	60	30%	8	25%	benign(0.094)	tolerated(0.96)	neutral(0.007)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SDSL	113675	genome.wustl.edu	37	12	113873154	113873154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138432.2	+1	provisional	p.V155A	0.858	32	0%	16	25%	13	23%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
TBX5	6910	genome.wustl.edu	37	12	114793599	114793599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000192.3	-1	reviewed	p.S432L	1.000	56	0%	29	34.5%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LOC652191	652191	genome.wustl.edu	37	12	114987416	114987416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716366.2	+1	model	p.P23L	1.000	159	0%	91	27.5%	0	-	-	-	-	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
MED13L	23389	genome.wustl.edu	37	12	116409904	116409904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.G1957W	1.000	168	0%	89	28.1%	29	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED13L	23389	genome.wustl.edu	37	12	116457158	116457158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.V294I	0.942	266	0.4%	232	34.1%	15	60%	benign(0.073)	tolerated(0.45)	neutral(0.017)	NULL
C12orf49	79794	genome.wustl.edu	37	12	117161021	117161021	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024738.1	-1	predicted	p.R40M	1.000	131	0%	67	22.4%	17	52.9%	probably_damaging(0.982)	deleterious(0.04)	deleterious(0.775)	NULL
RNFT2	84900	genome.wustl.edu	37	12	117271736	117271736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109903.1	+1	validated	p.S341I	1.000	36	0%	25	28%	0	-	probably_damaging(0.998)	tolerated(0.53)	deleterious(0.482)	NULL
FBXW8	26259	genome.wustl.edu	37	12	117423181	117423181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153348.2	+1	reviewed	p.A336S	0.000	199	0%	99	10.1%	2	0%	benign(0.028)	tolerated(0.58)	neutral(0.007)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
FBXW8	26259	genome.wustl.edu	37	12	117426552	117426552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153348.2	+1	reviewed	p.A373T	0.995	500	0%	267	29.2%	4	25%	benign(0.118)	tolerated(0.64)	neutral(0.013)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
NOS1	4842	genome.wustl.edu	37	12	117768619	117768619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	p.G86C	1.000	61	0%	32	25%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RFC5	5985	genome.wustl.edu	37	12	118460143	118460143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007370.4	+1	reviewed	p.A134T	1.000	146	0%	71	16.9%	35	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
VSIG10	54621	genome.wustl.edu	37	12	118511525	118511525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019086.5	-1	validated	p.E400K	0.974	251	0%	185	25.4%	11	63.6%	benign(0.174)	tolerated(0.6)	neutral(0.021)	HMMSmart_SM00409,superfamily_Immunoglobulin
VSIG10	54621	genome.wustl.edu	37	12	118533464	118533464	+	Missense_Mutation	SNP	G	G	A	rs142979297	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019086.5	-1	validated	p.R79C	0.984	113	0%	70	32.9%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TAOK3	51347	genome.wustl.edu	37	12	118588930	118588930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016281.3	-1	validated	p.R857C	1.000	513	0%	255	15.3%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CIT	11113	genome.wustl.edu	37	12	120135577	120135577	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.G1881	0.998	98	0%	37	24.3%	11	54.5%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
CIT	11113	genome.wustl.edu	37	12	120195287	120195287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007174.1	-1	validated	p.A823D	1.000	577	0.2%	288	14.6%	4	0%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120572130	120572130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.V2428I	0.999	83	1.2%	43	14%	105	14.2%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_HEAT,superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120572192	120572192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.A2407V	1.000	70	0%	32	40.6%	63	61.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM repeat
GCN1L1	10985	genome.wustl.edu	37	12	120608018	120608018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.A492T	1.000	307	0%	177	31.6%	23	39.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_ARM repeat
RPLP0	6175	genome.wustl.edu	37	12	120635168	120635168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002.3	-1	reviewed	p.A250V	1.000	83	0%	68	19.1%	5687	43.1%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ribosomal_60s
PXN	5829	genome.wustl.edu	37	12	120660719	120660719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080855.1	-1	validated	p.R147H	1.000	94	0%	30	30%	39	41%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Paxillin
MLEC	9761	genome.wustl.edu	37	12	121131966	121131966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014730.2	+1	validated	p.R103Q	1.000	140	0%	113	31%	55	43.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACADS	35	genome.wustl.edu	37	12	121176214	121176214	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000017.2	+1	reviewed	p.S252	1.000	47	0%	28	39.3%	27	40.7%	-	-	-	superfamily_AcylCoA_dehyd_NM
HNF1A	6927	genome.wustl.edu	37	12	121431360	121431360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000545.5	+1	reviewed	p.E188D	1.000	77	0%	48	35.4%	1	100%	benign(0.036)	tolerated(1)	neutral(0.002)	NULL
HNF1A	6927	genome.wustl.edu	37	12	121432115	121432115	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000545.5	+1	reviewed	p.P291fs	0.964	-	-	-	-	-	-	-	-	-	HMMPfam_HNF-1B_C
C12orf43	64897	genome.wustl.edu	37	12	121442255	121442255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022895.1	-1	predicted	p.A164T	1.000	32	0%	18	33.3%	11	18.1%	possibly_damaging(0.645)	deleterious(0)	deleterious(0.670)	NULL
OASL	8638	genome.wustl.edu	37	12	121458577	121458577	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003733.2	-1	validated	p.G444	0.001	296	0%	174	38.5%	2	0%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
OASL	8638	genome.wustl.edu	37	12	121461876	121461876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003733.2	-1	validated	p.V322I	0.053	127	0.8%	52	15.4%	1	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
KDM2B	84678	genome.wustl.edu	37	12	121877822	121877822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.L1223M	0.992	45	0%	19	26.3%	24	37.5%	probably_damaging(0.963)	deleterious(0.01)	deleterious(0.811)	HMMSmart_SM00367,superfamily_RNI-like
KDM2B	84678	genome.wustl.edu	37	12	121878755	121878755	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.G1158	1.000	72	0%	44	22.7%	25	52%	-	-	-	HMMSmart_SM00367,superfamily_RNI-like
KDM2B	84678	genome.wustl.edu	37	12	121970762	121970762	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.R294*	1.000	60	0%	35	28.6%	9	11.1%	-	-	-	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
KDM2B	84678	genome.wustl.edu	37	12	122018753	122018753	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032590.4	-1	reviewed	p.E22*	0.001	138	0%	64	12.5%	1	0%	-	-	-	NULL
MORN3	283385	genome.wustl.edu	37	12	122091082	122091082	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173855.4	-1	validated	p.L183	1.000	89	0%	50	24%	0	-	-	-	-	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
WDR66	144406	genome.wustl.edu	37	12	122392060	122392060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144668.4	+1	validated	p.S452F	1.000	261	0%	168	28.6%	8	37.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR66	144406	genome.wustl.edu	37	12	122395054	122395054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144668.4	+1	validated	p.S537I	1.000	348	0%	201	24.9%	3	66.6%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_WD40 repeat-like
LRRC43	254050	genome.wustl.edu	37	12	122675929	122675929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098519.1	+1	validated	p.L302F	0.002	87	0%	58	37.9%	1	0%	possibly_damaging(0.722)	tolerated(0.06)	deleterious(0.585)	NULL
B3GNT4	79369	genome.wustl.edu	37	12	122690867	122690867	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030765.2	+1	reviewed	p.G23	0.001	26	0%	20	60%	0	-	-	-	-	NULL
B3GNT4	79369	genome.wustl.edu	37	12	122691546	122691546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030765.2	+1	reviewed	p.A250S	0.998	50	0%	27	18.5%	1	100%	benign(0.149)	tolerated(0.19)	neutral(0.062)	HMMPfam_Galactosyl_T
B3GNT4	79369	genome.wustl.edu	37	12	122691608	122691608	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030765.2	+1	reviewed	p.T270	0.943	79	0%	27	33.3%	4	50%	-	-	-	HMMPfam_Galactosyl_T
CLIP1	6249	genome.wustl.edu	37	12	122758625	122758625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.A1340T	0.999	525	0%	328	29.3%	44	45.4%	possibly_damaging(0.541)	tolerated(0.06)	deleterious(0.506)	NULL
CLIP1	6249	genome.wustl.edu	37	12	122794387	122794387	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.L1161	0.583	85	0%	48	41.7%	23	17.3%	-	-	-	NULL
CLIP1	6249	genome.wustl.edu	37	12	122839712	122839712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.V385M	1.000	120	0%	58	37.9%	6	50%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
CLIP1	6249	genome.wustl.edu	37	12	122862059	122862059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.E178D	0.290	295	0%	189	34.4%	6	66.6%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
ZCCHC8	55596	genome.wustl.edu	37	12	122964855	122964855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017612.2	-1	validated	p.G341D	0.020	72	0%	48	22.9%	24	41.6%	benign(0)	tolerated(0.87)	neutral(0.001)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123082292	123082292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.D1457G	1.000	135	0%	64	31.2%	6	50%	possibly_damaging(0.905)	tolerated(0.36)	neutral(0.380)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123095392	123095392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.R1856H	0.062	134	0%	76	19.7%	13	46.1%	benign(0.017)	tolerated(0.61)	neutral(0.005)	HMMPfam_Rod_C
HCAR3	8843	genome.wustl.edu	37	12	123201196	123201196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006018.2	-1	validated	p.L30S	1.000	160	0%	74	25.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Family A G protein-coupled receptor-like
CCDC62	84660	genome.wustl.edu	37	12	123297826	123297826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201435.3	+1	validated	p.V621M	0.002	335	0%	247	25.5%	0	-	benign(0.156)	tolerated(0.06)	neutral(0.337)	NULL
OGFOD2	79676	genome.wustl.edu	37	12	123461417	123461417	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024623.1	+1	provisional	e3-1	1.000	20	0%	14	35.7%	0	-	-	-	-	-
PITPNM2	57605	genome.wustl.edu	37	12	123498510	123498510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020845.2	-1	validated	p.G53D	1.000	122	0%	65	26.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IP_trans,superfamily_Bet v1-like
MPHOSPH9	10198	genome.wustl.edu	37	12	123641386	123641386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.F1022V	1.000	122	0%	59	27.1%	8	12.5%	benign(0.119)	tolerated(0.05)	neutral(0.355)	NULL
MPHOSPH9	10198	genome.wustl.edu	37	12	123649924	123649924	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022782.2	-1	validated	p.A746S	1.000	474	0.2%	284	27.1%	8	62.5%	possibly_damaging(0.791)	tolerated(0.06)	deleterious(0.619)	NULL
SBNO1	55206	genome.wustl.edu	37	12	123780598	123780598	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018183.3	-1	validated	e31-1	1.000	285	0%	153	29.4%	5	100%	-	-	-	-
SBNO1	55206	genome.wustl.edu	37	12	123782665	123782665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018183.3	-1	validated	p.R1299H	1.000	178	0%	103	29.1%	68	51.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SETD8	387893	genome.wustl.edu	37	12	123889511	123889511	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020382.3	+1	validated	p.H246	0.989	134	0%	69	34.8%	65	60%	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
SETD8	387893	genome.wustl.edu	37	12	123892172	123892172	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020382.3	+1	validated	p.A327	0.925	106	0%	56	26.8%	50	50%	-	-	-	HMMPfam_SET,HMMSmart_SET,superfamily_SSF82199
DDX55	57696	genome.wustl.edu	37	12	124094578	124094578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020936.1	+1	reviewed	p.A215V	1.000	105	0%	49	26.5%	12	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATP6V0A2	23545	genome.wustl.edu	37	12	124203214	124203214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012463.3	+1	reviewed	p.E54D	1.000	195	0%	104	21.2%	9	44.4%	benign(0.058)	deleterious(0)	neutral(0.448)	HMMPfam_V_ATPase_I
DNAH10	196385	genome.wustl.edu	37	12	124274539	124274539	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.R501	0.414	436	0%	238	23.9%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124283918	124283918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.K645N	1.000	114	0%	64	15.6%	0	-	possibly_damaging(0.942)	tolerated(0.34)	neutral(0.410)	HMMPfam_DHC_N1
DNAH10	196385	genome.wustl.edu	37	12	124293441	124293441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.T911A	0.085	1447	0.1%	872	26.5%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124345600	124345600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.A2146V	1.000	230	0%	124	29%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
UBC	7316	genome.wustl.edu	37	12	125397930	125397930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021009.4	-1	validated	p.R130C	1.000	578	0.2%	319	11.9%	1643	7.9%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
LOC100288312	100288312	genome.wustl.edu	37	12	125398213	125398213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343222.1	+1	model	p.A699S	1.000	535	0%	276	24.6%	1011	36.6%	-	-	-	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126136990	126136990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.L635I	0.996	102	0%	46	15.2%	0	-	possibly_damaging(0.703)	tolerated(0.16)	neutral(0.312)	NULL
SLC15A4	121260	genome.wustl.edu	37	12	129285489	129285489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145648.3	-1	validated	p.V442I	0.523	91	0%	34	23.5%	44	47.7%	benign(0.042)	tolerated(0.2)	neutral(0.052)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
SLC15A4	121260	genome.wustl.edu	37	12	129299333	129299333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145648.3	-1	validated	p.R277C	0.000	225	0%	115	31.3%	41	51.2%	possibly_damaging(0.795)	deleterious(0)	deleterious(0.743)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
SLC15A4	121260	genome.wustl.edu	37	12	129299549	129299549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145648.3	-1	validated	p.G205R	1.000	520	0%	244	11.5%	28	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTR2,superfamily_MFS general substrate transporter,PatternScan_PTR2_2
GLT1D1	144423	genome.wustl.edu	37	12	129429907	129429907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144669.1	+1	provisional	p.V138L	0.296	60	0%	35	14.3%	0	-	possibly_damaging(0.666)	tolerated(0.56)	neutral(0.242)	superfamily_SSF53756
TMEM132D	121256	genome.wustl.edu	37	12	129558548	129558548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.E1058K	0.000	391	0%	158	30.4%	0	-	benign(0.025)	tolerated(0.88)	neutral(0.001)	NULL
FZD10	11211	genome.wustl.edu	37	12	130648301	130648301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007197.2	+1	reviewed	p.V272I	1.000	38	0%	11	45.5%	27	18.5%	unknown(0)	-	-	HMMPfam_Frizzled
PIWIL1	9271	genome.wustl.edu	37	12	130831129	130831129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004764.3	+1	reviewed	p.K177N	1.000	168	0%	97	10.3%	0	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	superfamily_PAZ domain
GPR133	283383	genome.wustl.edu	37	12	131476836	131476836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.T289A	0.000	268	0%	151	18.5%	1	0%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
GPR133	283383	genome.wustl.edu	37	12	131561403	131561403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.A511T	1.000	338	0%	145	27.6%	0	-	probably_damaging(0.981)	tolerated(0.14)	deleterious(0.675)	HMMPfam_GPS,HMMSmart_SM00303
SFSWAP	6433	genome.wustl.edu	37	12	132237728	132237728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004592.2	+1	reviewed	p.A381V	0.999	212	0.5%	106	18.9%	26	34.6%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
SFSWAP	6433	genome.wustl.edu	37	12	132262653	132262653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004592.2	+1	reviewed	p.P729H	0.516	145	0%	70	37.1%	32	31.2%	unknown(0)	tolerated(0.06)	-	NULL
PUS1	80324	genome.wustl.edu	37	12	132426055	132426055	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025215.5	+1	reviewed	p.Q255*	0.000	37	0%	26	19.2%	42	14.2%	-	-	-	HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase
EP400	57634	genome.wustl.edu	37	12	132471081	132471081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.P650H	0.010	79	0%	47	25.5%	6	66.6%	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132474528	132474528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.R809H	1.000	94	1.1%	58	20.7%	3	66.6%	unknown(0)	-	-	HMMPfam_HSA,HMMSmart_HSA
EP400	57634	genome.wustl.edu	37	12	132475981	132475981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.A886T	0.000	239	0%	99	25.3%	5	80%	unknown(0)	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132510208	132510208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.V1624M	1.000	29	0%	20	35%	6	16.6%	unknown(0)	-	-	NULL
SNORA49	677829	genome.wustl.edu	37	12	132515867	132515867	+	RNA	SNP	G	G	A	rs188280770	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002979.2	+1	validated	NULL	0.000	243	0%	115	28.7%	0	-	-	-	-	-
EP400	57634	genome.wustl.edu	37	12	132530330	132530330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.T2361I	1.000	58	0%	36	25%	12	66.6%	unknown(0)	-	-	superfamily_Homeodomain_like
EP400	57634	genome.wustl.edu	37	12	132551360	132551360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.M2864I	1.000	133	0%	53	26.4%	23	47.8%	benign(0.026)	-	-	NULL
DDX51	317781	genome.wustl.edu	37	12	132627294	132627294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175066.3	-1	validated	p.G217C	0.994	18	0%	16	43.8%	15	26.6%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMSmart_DEXDc,superfamily_SSF52540
POLE	5426	genome.wustl.edu	37	12	133208982	133208982	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.L2083	1.000	224	0%	111	25.2%	18	22.2%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133220438	133220438	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.G1425	0.455	59	0%	28	25%	16	62.5%	-	-	-	NULL
POLE	5426	genome.wustl.edu	37	12	133250250	133250250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.L424I	1.000	495	0.2%	272	24.3%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF605	100289635	genome.wustl.edu	37	12	133502450	133502450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360187	-1	known	p.C479R	0.978	194	0%	111	23.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF140	7699	genome.wustl.edu	37	12	133683213	133683213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003440.2	+1	validated	p.H450Q	0.002	235	0%	146	15.1%	17	41.1%	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
ZNF10	7556	genome.wustl.edu	37	12	133732387	133732387	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015394.4	+1	reviewed	p.F185	0.432	233	0%	134	14.9%	5	20%	-	-	-	NULL
ZNF268	10795	genome.wustl.edu	37	12	133781028	133781028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003415.2	+1	validated	p.P919H	0.530	48	0%	32	31.2%	20	30%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_C2H2 and C2HC zinc fingers
MPHOSPH8	54737	genome.wustl.edu	37	13	20221186	20221186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.D325N	0.070	297	0%	154	35.1%	34	35.2%	possibly_damaging(0.527)	tolerated(0.2)	neutral(0.227)	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20237220	20237220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.A658V	1.000	348	0%	179	20.1%	24	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PSPC1	55269	genome.wustl.edu	37	13	20325441	20325441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042414.1	-1	validated	p.H313D	1.000	605	0%	406	29.1%	41	36.5%	benign(0.253)	deleterious(0.01)	neutral(0.432)	NULL
IFT88	8100	genome.wustl.edu	37	13	21148614	21148614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175605.3	+1	reviewed	p.E39D	1.000	141	0%	80	23.7%	3	0%	possibly_damaging(0.736)	tolerated(0.48)	neutral(0.280)	NULL
IFT88	8100	genome.wustl.edu	37	13	21219086	21219086	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175605.3	+1	reviewed	p.A655	0.996	264	0%	184	29.9%	11	81.8%	-	-	-	HMMSmart_SM00028,superfamily_TPR-like
IFT88	8100	genome.wustl.edu	37	13	21237729	21237729	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175605.3	+1	reviewed	p.E730*	1.000	224	0%	134	35.1%	9	0%	-	-	-	NULL
XPO4	64328	genome.wustl.edu	37	13	21364662	21364662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022459.4	-1	validated	p.A952V	1.000	191	0%	116	28.4%	13	53.8%	benign(0.173)	deleterious(0.04)	neutral(0.365)	superfamily_ARM-type_fold
SAP18	10284	genome.wustl.edu	37	13	21721012	21721012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005870.4	+1	reviewed	p.G103D	1.000	306	0.3%	215	27.4%	341	40.7%	probably_damaging(0.959)	tolerated(0.13)	deleterious(0.655)	HMMPfam_SAP18
SKA3	221150	genome.wustl.edu	37	13	21746496	21746496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314759	-1	known	p.R105C	0.106	204	0%	129	34.1%	8	12.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
EFHA1	221154	genome.wustl.edu	37	13	22067418	22067418	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152726.2	-1	validated	p.V425	1.000	303	0%	197	28.4%	32	25%	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23909101	23909101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.P2972S	1.000	184	0%	113	33.6%	1	0%	possibly_damaging(0.794)	tolerated(0.46)	neutral(0.310)	NULL
SACS	26278	genome.wustl.edu	37	13	23929682	23929682	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.S357C	0.424	225	0%	149	12.1%	2	50%	possibly_damaging(0.872)	deleterious(0.04)	deleterious(0.688)	NULL
TNFRSF19	55504	genome.wustl.edu	37	13	24242995	24242995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018647.2	+1	reviewed	p.H335R	0.000	371	0.3%	223	27.8%	22	36.3%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
MIPEP	4285	genome.wustl.edu	37	13	24449041	24449041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005932.2	-1	reviewed	p.A183T	1.000	471	0.2%	309	14.6%	17	23.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_SSF55486
RNF17	56163	genome.wustl.edu	37	13	25363557	25363557	+	Silent	SNP	T	T	C	rs34345738		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.P285	0.998	736	0%	587	31.7%	0	-	-	-	-	NULL
RNF17	56163	genome.wustl.edu	37	13	25376659	25376659	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.S633	1.000	545	0.4%	346	27.2%	0	-	-	-	-	NULL
RNF17	56163	genome.wustl.edu	37	13	25428216	25428216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.V1182I	0.963	212	0%	137	30.7%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_TUDOR
RNF17	56163	genome.wustl.edu	37	13	25433283	25433283	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.V1252D	0.990	79	0%	49	26.5%	0	-	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT
RNF17	56163	genome.wustl.edu	37	13	25442793	25442793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.S1406Y	0.264	371	0%	242	29.8%	0	-	possibly_damaging(0.929)	tolerated(0.9)	neutral(0.376)	NULL
CENPJ	55835	genome.wustl.edu	37	13	25458137	25458137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.S1263I	1.000	244	0.4%	129	31.8%	11	9%	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_Tcp10_C
CENPJ	55835	genome.wustl.edu	37	13	25480746	25480746	+	Missense_Mutation	SNP	G	G	A	rs193181742	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.T477M	0.000	441	0%	247	36.4%	5	0%	possibly_damaging(0.939)	deleterious(0.04)	deleterious(0.734)	NULL
FAM123A	219287	genome.wustl.edu	37	13	25744541	25744541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152704.2	-1	validated	p.P406L	0.405	65	0%	32	28.1%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_WTX
NUPL1	9818	genome.wustl.edu	37	13	25887131	25887131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014089.3	+1	reviewed	p.G133S	0.939	178	0%	142	33.8%	21	47.6%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
NUPL1	9818	genome.wustl.edu	37	13	25912854	25912854	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014089.3	+1	reviewed	p.G539*	1.000	271	0%	167	23.4%	28	35.7%	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26148972	26148972	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.I563	1.000	233	0.4%	180	11.1%	0	-	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A2	51761	genome.wustl.edu	37	13	26153952	26153952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.R625Q	1.000	236	0%	148	31.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP8A2	51761	genome.wustl.edu	37	13	26411366	26411366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.M940I	1.000	267	0%	154	14.9%	0	-	benign(0.215)	tolerated(0.14)	neutral(0.271)	NULL
SHISA2	387914	genome.wustl.edu	37	13	26620949	26620949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007538.1	-1	provisional	p.A197V	0.892	108	0%	44	27.3%	0	-	benign(0.139)	tolerated(0.82)	neutral(0.013)	NULL
RNF6	6049	genome.wustl.edu	37	13	26789198	26789198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005977.3	-1	reviewed	p.R274Q	0.206	515	0%	277	22.7%	18	22.2%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
CDK8	1024	genome.wustl.edu	37	13	26927988	26927988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001260.1	+1	reviewed	p.H143Y	1.000	187	0%	122	10.7%	25	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WASF3	10810	genome.wustl.edu	37	13	27216522	27216522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006646.5	+1	reviewed	p.R39C	1.000	453	0%	288	28.8%	10	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GTF3A	2971	genome.wustl.edu	37	13	28009054	28009054	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002097.2	+1	reviewed	p.G252	1.000	544	0%	304	31.2%	266	40.9%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LNX2	222484	genome.wustl.edu	37	13	28127484	28127484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.A547T	0.292	200	0%	138	32.6%	10	70%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
LNX2	222484	genome.wustl.edu	37	13	28136741	28136741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.R345W	1.000	180	0.6%	137	31.4%	9	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PDZ,superfamily_PDZ
LNX2	222484	genome.wustl.edu	37	13	28143366	28143366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.T152I	1.000	789	0%	576	26%	6	50%	benign(0.017)	tolerated(0.11)	neutral(0.272)	NULL
PAN3	255967	genome.wustl.edu	37	13	28840856	28840856	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175854.7	+1	validated	p.V272	0.671	452	0%	358	31.3%	17	70.5%	-	-	-	NULL
FLT1	2321	genome.wustl.edu	37	13	28896431	28896431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002019.4	-1	reviewed	p.A1007T	1.000	277	0%	185	25.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FLT1	2321	genome.wustl.edu	37	13	29008278	29008278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002019.4	-1	reviewed	p.T198M	0.997	239	0%	139	27.3%	6	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
MTUS2	23281	genome.wustl.edu	37	13	29600570	29600570	+	Missense_Mutation	SNP	C	C	T	rs149038100	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.R589C	0.000	327	0%	176	26.7%	0	-	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	NULL
C13orf33	84935	genome.wustl.edu	37	13	31495255	31495255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032849.3	+1	validated	p.R165W	0.999	119	0%	79	29.1%	2	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
FRY	10129	genome.wustl.edu	37	13	32653139	32653139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R80H	1.000	1069	0.1%	647	28.3%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FRY	10129	genome.wustl.edu	37	13	32785133	32785133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R1518H	1.000	164	0%	93	38.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRY	10129	genome.wustl.edu	37	13	32835786	32835786	+	Missense_Mutation	SNP	C	C	T	rs186477124	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023037.2	+1	validated	p.R2484C	1.000	113	0.9%	73	31.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911691	32911691	+	Missense_Mutation	SNP	A	A	G	rs80359377		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.T1067A	0.000	155	0%	98	32.7%	0	-	benign(0.046)	tolerated(0.24)	neutral(0.040)	NULL
BRCA2	675	genome.wustl.edu	37	13	32911724	32911724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.V1078I	0.035	159	0%	101	23.8%	0	-	benign(0.231)	deleterious(0.03)	neutral(0.388)	NULL
BRCA2	675	genome.wustl.edu	37	13	32950813	32950813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.T2880I	0.000	65	0%	45	13.3%	1	0%	benign(0.001)	tolerated(0.22)	neutral(0.042)	superfamily_Nucleic_acid_OB,superfamily_SSF81878
N4BP2L1	90634	genome.wustl.edu	37	13	32977190	32977190	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052818.2	-1	validated	p.N207	0.000	246	0%	155	28.4%	2	50%	-	-	-	NULL
KL	9365	genome.wustl.edu	37	13	33629265	33629265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004795.3	+1	reviewed	p.S471I	1.000	314	0%	176	23.9%	0	-	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases
STARD13	90627	genome.wustl.edu	37	13	33700237	33700237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178006.3	-1	validated	p.R688H	1.000	162	0%	81	34.6%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
NBEA	26960	genome.wustl.edu	37	13	36229805	36229805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.V2740M	1.000	146	0%	86	27.9%	2	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DCLK1	9201	genome.wustl.edu	37	13	36410234	36410234	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004734.3	-1	validated	p.R389*	0.983	532	0.4%	306	23.9%	0	-	-	-	-	superfamily_Kinase_like
DCLK1	9201	genome.wustl.edu	37	13	36699935	36699935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004734.3	-1	validated	p.L114F	0.859	125	0%	54	27.8%	1	100%	benign(0.008)	tolerated(0.08)	neutral(0.300)	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
DCLK1	9201	genome.wustl.edu	37	13	36699987	36699987	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004734.3	-1	validated	p.S96	0.978	149	1.3%	72	34.7%	0	-	-	-	-	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
SOHLH2	54937	genome.wustl.edu	37	13	36744813	36744813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017826.2	-1	validated	p.V371G	0.000	379	0%	235	31.1%	10	70%	possibly_damaging(0.681)	deleterious(0.03)	deleterious(0.607)	NULL
SPG20	23111	genome.wustl.edu	37	13	36905640	36905640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142294.1	-1	reviewed	p.A302T	0.749	307	0%	219	32%	51	47%	benign(0.056)	tolerated(0.52)	neutral(0.012)	NULL
CSNK1A1L	122011	genome.wustl.edu	37	13	37678957	37678957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145203.5	-1	validated	p.T146N	1.000	346	0.3%	197	39.1%	0	-	benign(0.045)	deleterious(0)	neutral(0.447)	superfamily_Kinase_like,HMMPfam_Pkinase
TRPC4	7223	genome.wustl.edu	37	13	38211358	38211358	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.A877	0.986	217	0%	132	28.8%	0	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38213433	38213433	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.R700*	1.000	292	0%	158	34.2%	0	-	-	-	-	NULL
TRPC4	7223	genome.wustl.edu	37	13	38248505	38248505	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	e4-1	1.000	114	0.9%	85	35.3%	0	-	-	-	-	-
TRPC4	7223	genome.wustl.edu	37	13	38357206	38357206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.L89F	0.999	356	0%	344	34.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FREM2	341640	genome.wustl.edu	37	13	39433577	39433577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.T2457A	1.000	250	0.4%	159	17%	2	50%	probably_damaging(0.99)	tolerated(0.05)	deleterious(0.787)	NULL
LHFP	10186	genome.wustl.edu	37	13	40175145	40175145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005780.2	-1	reviewed	p.R70H	1.000	345	0%	158	27.2%	18	27.7%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_L_HGMIC_fpl
LHFP	10186	genome.wustl.edu	37	13	40175281	40175281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005780.2	-1	reviewed	p.V25M	1.000	236	0%	120	30.8%	9	33.3%	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_L_HGMIC_fpl
FOXO1	2308	genome.wustl.edu	37	13	41133803	41133803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002015.3	-1	reviewed	p.R609C	1.000	296	0.3%	145	33.1%	10	30%	possibly_damaging(0.919)	deleterious(0.01)	deleterious(0.775)	NULL
SLC25A15	10166	genome.wustl.edu	37	13	41379386	41379386	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014252.3	+1	reviewed	p.S149	1.000	124	0.8%	76	30.3%	18	66.6%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
NAA16	79612	genome.wustl.edu	37	13	41943311	41943311	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.K613	1.000	355	0%	250	29.2%	9	44.4%	-	-	-	superfamily_TPR-like
NAA16	79612	genome.wustl.edu	37	13	41947883	41947883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.R756C	0.028	523	0%	360	25.6%	2	50%	possibly_damaging(0.76)	tolerated(0.1)	deleterious(0.568)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42404670	42404670	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.Q565	0.817	301	0%	161	21.1%	4	0%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA0564	23078	genome.wustl.edu	37	13	42442612	42442612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.R361H	1.000	351	0%	200	33%	1	100%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42524143	42524143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.T57I	1.000	76	0%	63	28.6%	4	50%	possibly_damaging(0.598)	tolerated(0.16)	neutral(0.266)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42874186	42874186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.R435H	1.000	535	0%	419	31.3%	8	12.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42874983	42874983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.A701T	1.000	287	0%	221	28.5%	11	72.7%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
AKAP11	11215	genome.wustl.edu	37	13	42877161	42877161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.S1427C	0.254	287	0%	208	12.5%	6	33.3%	probably_damaging(0.988)	tolerated(0.11)	deleterious(0.709)	NULL
EPSTI1	94240	genome.wustl.edu	37	13	43491707	43491707	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002264.1	-1	validated	p.L248	0.601	1169	0.1%	666	27.3%	7	0%	-	-	-	NULL
EPSTI1	94240	genome.wustl.edu	37	13	43544784	43544784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002264.1	-1	validated	p.A71S	0.470	280	0%	164	40.9%	4	0%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
TSC22D1	8848	genome.wustl.edu	37	13	45149686	45149686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183422.2	-1	validated	p.E175D	1.000	48	0%	19	31.6%	93	44%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
KIAA1704	55425	genome.wustl.edu	37	13	45602031	45602031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018559.2	+1	predicted	p.D306Y	1.000	201	0%	121	19.8%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC25A30	253512	genome.wustl.edu	37	13	45973125	45973125	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010875.2	-1	validated	p.R235*	0.015	291	0.3%	173	31.8%	11	0%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
SIAH3	283514	genome.wustl.edu	37	13	46357611	46357611	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198849.2	-1	validated	p.T239	0.926	112	0%	61	21.3%	0	-	-	-	-	superfamily_Traf_like,HMMPfam_Sina
LCP1	3936	genome.wustl.edu	37	13	46708369	46708369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002298.4	-1	reviewed	p.L507I	1.000	311	0%	161	13.7%	22	0%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	superfamily_Calponin-homology
RB1	5925	genome.wustl.edu	37	13	48934257	48934257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.P238S	1.000	178	0%	127	27.6%	27	48.1%	possibly_damaging(0.856)	tolerated(0.74)	neutral(0.332)	NULL
RCBTB2	1102	genome.wustl.edu	37	13	49077014	49077014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430805	-1	known	p.V250I	0.005	72	0%	42	23.8%	8	50%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
MLNR	2862	genome.wustl.edu	37	13	49796292	49796292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001507.1	+1	provisional	p.A340T	0.796	307	0%	193	30.6%	1	0%	possibly_damaging(0.945)	tolerated(0.08)	deleterious(0.690)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RCBTB1	55213	genome.wustl.edu	37	13	50115933	50115933	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018191.3	-1	reviewed	p.S401	0.002	113	0%	87	21.8%	16	37.5%	-	-	-	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
INTS6	26512	genome.wustl.edu	37	13	51943112	51943112	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012141.2	-1	reviewed	p.K813N	1.000	636	0%	382	28.8%	43	58.1%	possibly_damaging(0.936)	deleterious(0.01)	deleterious(0.787)	NULL
NEK5	341676	genome.wustl.edu	37	13	52667217	52667217	+	Missense_Mutation	SNP	G	G	A	rs145214408	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.T394M	0.191	254	0%	176	26.7%	4	25%	benign(0.144)	tolerated(0.22)	neutral(0.055)	NULL
NEK5	341676	genome.wustl.edu	37	13	52686495	52686495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.G74D	0.000	123	0%	95	22.1%	1	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
THSD1	55901	genome.wustl.edu	37	13	52971655	52971655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018676.3	-1	reviewed	p.V245M	1.000	146	0%	89	23.6%	2	100%	benign(0.044)	tolerated(0.4)	neutral(0.018)	NULL
LECT1	11061	genome.wustl.edu	37	13	53277862	53277862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007015.2	-1	reviewed	p.T291	0.925	141	0%	112	28.6%	0	-	-	-	-	NULL
PCDH8	5100	genome.wustl.edu	37	13	53422262	53422262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002590.2	-1	reviewed	p.L104M	1.000	38	2.6%	19	31.6%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58206753	58206753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.V25M	0.996	15	0.000	7	0.571	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDH17	27253	genome.wustl.edu	37	13	58207470	58207470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.D264N	1.000	79	0%	44	15.9%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Cadherin,superfamily_Cadherin-like
LOC390407	390407	genome.wustl.edu	37	13	61212023	61212023	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078475.1	-1	model	NULL	1.000	166	0%	114	21.9%	0	-	-	-	-	-
PCDH20	64881	genome.wustl.edu	37	13	61985588	61985588	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022843.3	-1	validated	p.E882*	1.000	223	0%	125	32%	3	0%	-	-	-	NULL
PCDH20	64881	genome.wustl.edu	37	13	61987142	61987142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022843.3	-1	validated	p.P364S	1.000	483	0%	226	33.6%	1	0%	benign(0.005)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH20	64881	genome.wustl.edu	37	13	61988013	61988013	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022843.3	-1	validated	p.N73	0.999	36	0%	22	27.3%	1	0%	-	-	-	HMMPfam_Cadherin_2
LOC647262	647262	genome.wustl.edu	37	13	64321224	64321224	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_934622.3	+1	model	p.G97	0.381	448	0%	217	32.3%	0	-	-	-	-	NULL
KLHL1	57626	genome.wustl.edu	37	13	70281859	70281859	+	Silent	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.V695	0.586	215	0%	165	31.5%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MZT1	440145	genome.wustl.edu	37	13	73293205	73293205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001071775.2	-1	validated	p.T37N	1.000	375	0%	215	27%	32	56.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BORA	79866	genome.wustl.edu	37	13	73312135	73312135	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024808.2	+1	validated	p.W114*	1.000	163	0%	132	22%	5	40%	-	-	-	NULL
DIS3	22894	genome.wustl.edu	37	13	73347922	73347922	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014953.3	-1	validated	p.I380S	1.000	236	0%	143	30.1%	21	42.8%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
DIS3	22894	genome.wustl.edu	37	13	73352462	73352462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014953.3	-1	validated	p.A148V	1.000	65	0%	50	24%	19	36.8%	benign(0.081)	deleterious(0.01)	neutral(0.412)	HMMSmart_SM00670,superfamily_PIN domain-like
DIS3	22894	genome.wustl.edu	37	13	73355067	73355067	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014953.3	-1	validated	p.R101	0.678	206	0%	82	13.4%	8	0%	-	-	-	HMMSmart_SM00670,superfamily_PIN domain-like
PIBF1	10464	genome.wustl.edu	37	13	73539478	73539478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006346.2	+1	validated	p.R634C	1.000	136	0%	55	27.3%	23	52.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KLF5	688	genome.wustl.edu	37	13	73636199	73636199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001730.3	+1	reviewed	p.Q154H	1.000	262	0%	187	27.8%	72	43%	probably_damaging(0.983)	tolerated(0.05)	deleterious(0.774)	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75900464	75900464	+	Silent	SNP	C	C	T	rs184072266	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.P634	0.449	98	0%	48	25%	14	35.7%	-	-	-	NULL
LMO7	4008	genome.wustl.edu	37	13	76395702	76395702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015842.2	+1	reviewed	p.G633V	1.000	264	0%	168	31.5%	16	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77669695	77669695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R3295C	1.000	183	0.5%	162	22.2%	8	37.5%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77720341	77720341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.N2343K	0.998	198	0%	159	23.3%	3	66.6%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	superfamily_E set domains
MYCBP2	23077	genome.wustl.edu	37	13	77748602	77748602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R1794H	1.000	293	0%	164	33.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHR
MYCBP2	23077	genome.wustl.edu	37	13	77752032	77752032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.T1693A	1.000	225	0%	134	20.9%	1	100%	possibly_damaging(0.734)	tolerated(0.17)	neutral(0.328)	HMMPfam_PHR
POU4F1	5457	genome.wustl.edu	37	13	79175651	79175651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006237.3	-1	validated	p.A387T	1.000	48	0%	22	31.8%	1	0%	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
RNF219	79596	genome.wustl.edu	37	13	79213138	79213138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024546.3	-1	validated	p.Q123H	1.000	363	0%	199	14.6%	6	33.3%	benign(0.064)	deleterious(0.02)	neutral(0.387)	NULL
RNF219	79596	genome.wustl.edu	37	13	79219036	79219036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024546.3	-1	validated	p.V57I	1.000	412	0%	218	28%	6	33.3%	benign(0.291)	tolerated(0.14)	neutral(0.339)	superfamily_RING/U-box
SPRY2	10253	genome.wustl.edu	37	13	80911263	80911263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005842.2	-1	reviewed	p.R193M	1.000	128	0%	73	21.9%	52	32.6%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sprouty
SPRY2	10253	genome.wustl.edu	37	13	80911348	80911348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005842.2	-1	reviewed	p.P165S	1.000	120	0%	74	16.2%	37	8.1%	probably_damaging(0.995)	tolerated(0.52)	neutral(0.466)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84454598	84454598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.H349Y	1.000	144	0%	58	31%	0	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	HMMSmart_LRRNT,superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86368833	86368833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.A604D	1.000	280	0%	233	28.8%	6	83.3%	benign(0.141)	tolerated(0.08)	neutral(0.312)	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329125	88329125	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015567.1	+1	validated	p.R494	0.913	239	0%	145	27.6%	4	25%	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88329518	88329518	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015567.1	+1	validated	p.P625	1.000	246	0%	131	13.7%	1	100%	-	-	-	superfamily_L domain-like
GPC5	2262	genome.wustl.edu	37	13	92380868	92380868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004466.4	+1	reviewed	p.G368V	0.998	570	0.2%	403	28.3%	0	-	benign(0.048)	tolerated(0.53)	neutral(0.010)	HMMPfam_Glypican
GPC5	2262	genome.wustl.edu	37	13	92797193	92797193	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004466.4	+1	reviewed	p.C504*	0.866	346	0.6%	238	30.7%	0	-	-	-	-	HMMPfam_Glypican
GPC6	10082	genome.wustl.edu	37	13	95050870	95050870	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005708.3	+1	reviewed	p.G480	1.000	261	0%	187	25.1%	13	46.1%	-	-	-	HMMPfam_Glypican
DCT	1638	genome.wustl.edu	37	13	95131420	95131420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129889.1	-1	validated	p.M30I	1.000	131	0%	58	37.9%	0	-	benign(0.124)	tolerated(0.06)	neutral(0.333)	NULL
DZIP1	22873	genome.wustl.edu	37	13	96293855	96293855	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198968.2	-1	validated	p.T97	1.000	109	0%	39	30.8%	2	0%	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96599291	96599291	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020121.3	-1	validated	p.H559	0.001	212	0.5%	164	26.8%	2	50%	-	-	-	NULL
UGGT2	55757	genome.wustl.edu	37	13	96599307	96599307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020121.3	-1	validated	p.F554C	1.000	240	0%	184	29.9%	3	33.3%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
MBNL2	10150	genome.wustl.edu	37	13	97999257	97999257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144778.2	+1	reviewed	p.A247V	1.000	31	0%	17	64.7%	22	31.8%	possibly_damaging(0.659)	deleterious(0.04)	deleterious(0.582)	NULL
RAP2A	5911	genome.wustl.edu	37	13	98116647	98116647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021033.6	+1	validated	p.A168V	0.997	221	0%	143	14.7%	20	15%	benign(0.009)	tolerated(0.23)	neutral(0.042)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
IPO5	3843	genome.wustl.edu	37	13	98637706	98637706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002271.4	+1	reviewed	p.R86H	1.000	191	0%	116	25%	70	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
FARP1	10160	genome.wustl.edu	37	13	99040701	99040701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.R275H	1.000	62	0%	36	22.2%	44	25%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_FERM_C,superfamily_PH domain-like
FARP1	10160	genome.wustl.edu	37	13	99063018	99063018	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.A545T	1.000	40	0%	27	25.9%	44	38.6%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FARP1	10160	genome.wustl.edu	37	13	99091387	99091387	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.S790	0.996	126	0%	54	11.1%	62	11.2%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
STK24	8428	genome.wustl.edu	37	13	99127579	99127579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003576.3	-1	validated	p.A134T	1.000	104	0%	45	26.7%	118	40.6%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DOCK9	23348	genome.wustl.edu	37	13	99449492	99449492	+	Silent	SNP	A	A	C	rs78977328	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400228	-1	known	p.L588V	0.998	73	0%	32	25%	21	33.3%	-	-	-	HMMPfam_Ded_cyto
ZIC5	85416	genome.wustl.edu	37	13	100617821	100617821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033132.3	-1	validated	p.P601H	1.000	65	0%	41	24.4%	0	-	unknown(0)	deleterious(0)	-	NULL
PCCA	5095	genome.wustl.edu	37	13	100925468	100925468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000282.3	+1	reviewed	p.E311D	0.999	244	0%	140	24.3%	20	40%	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
TMTC4	84899	genome.wustl.edu	37	13	101287075	101287075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032813.2	-1	validated	p.C497Y	1.000	385	0%	182	24.7%	27	59.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
TMTC4	84899	genome.wustl.edu	37	13	101287433	101287433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032813.2	-1	validated	p.L407	1.000	79	0%	40	32.5%	17	52.9%	-	-	-	NULL
TMTC4	84899	genome.wustl.edu	37	13	101315352	101315352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032813.2	-1	validated	p.L140I	0.991	132	0%	74	13.5%	21	9.5%	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	NULL
NALCN	259232	genome.wustl.edu	37	13	101756888	101756888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.T917N	1.000	263	0%	208	25.5%	0	-	benign(0.008)	tolerated(0.48)	neutral(0.011)	superfamily_Voltage-gated potassium channels
NALCN	259232	genome.wustl.edu	37	13	101833635	101833635	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376196	-1	known	p.C606	0.000	110	0%	58	25.9%	0	-	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	102029055	102029055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.P214S	0.853	460	0%	354	13%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TPP2	7174	genome.wustl.edu	37	13	103297309	103297309	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.Y781	0.348	255	0%	220	25.9%	38	68.4%	-	-	-	NULL
ERCC5	2073	genome.wustl.edu	37	13	103518988	103518988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000123.2	+1	reviewed	p.L776M	1.000	58	0%	30	40%	40	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PIN domain-like
SLC10A2	6555	genome.wustl.edu	37	13	103718399	103718399	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000452.2	-1	reviewed	p.G67	1.000	428	0%	265	27.5%	0	-	-	-	-	HMMPfam_SBF
SLC10A2	6555	genome.wustl.edu	37	13	103718444	103718444	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000452.2	-1	reviewed	p.N52	0.975	519	0.2%	338	31.7%	0	-	-	-	-	HMMPfam_SBF
ABHD13	84945	genome.wustl.edu	37	13	108881859	108881859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032859.2	+1	validated	p.R98H	1.000	220	0.9%	129	28.7%	22	59%	benign(0.004)	tolerated(0.12)	neutral(0.261)	superfamily_alpha/beta-Hydrolases
MYO16	23026	genome.wustl.edu	37	13	109644730	109644730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.Q770H	0.686	121	0%	94	26.6%	0	-	benign(0.144)	tolerated(0.12)	neutral(0.273)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109672232	109672232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397268	+1	known	p.L922I	0.024	150	0%	110	29.1%	0	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109672251	109672251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.A908T	0.994	146	0%	106	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109704717	109704717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.A959D	0.145	476	0%	321	28.3%	0	-	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO16	23026	genome.wustl.edu	37	13	109777511	109777511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.R1174I	0.006	123	0%	60	28.3%	0	-	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	NULL
MYO16	23026	genome.wustl.edu	37	13	109792641	109792641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.D1339N	1.000	19	0%	12	33.3%	0	-	possibly_damaging(0.879)	deleterious(0)	deleterious(0.787)	NULL
MYO16	23026	genome.wustl.edu	37	13	109817294	109817294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.T1715M	0.085	110	0.9%	66	24.2%	0	-	benign(0.034)	deleterious(0)	neutral(0.447)	NULL
COL4A1	1282	genome.wustl.edu	37	13	110864820	110864820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001845.4	-1	reviewed	p.P111S	1.000	301	0%	145	26.2%	42	7.1%	unknown(0)	tolerated(0.24)	-	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111082271	111082271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.A173T	0.081	124	0%	76	18.4%	81	1.2%	unknown(0)	tolerated(0.55)	-	HMMPfam_Collagen
COL4A2	1284	genome.wustl.edu	37	13	111160338	111160338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.P1551T	1.000	85	0%	25	52%	260	9.2%	possibly_damaging(0.739)	tolerated(0.32)	neutral(0.295)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
COL4A2	1284	genome.wustl.edu	37	13	111160418	111160418	+	Silent	SNP	C	C	A	rs72659607	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.P1577	0.006	90	0%	36	13.9%	294	5.1%	-	-	-	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
COL4A2	1284	genome.wustl.edu	37	13	111164403	111164403	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001846.2	+1	reviewed	p.Y1668	0.985	73	0%	33	42.4%	238	10.9%	-	-	-	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
CARS2	79587	genome.wustl.edu	37	13	111298324	111298324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024537.2	-1	validated	p.A436V	0.485	61	1.6%	20	25%	72	41.6%	possibly_damaging(0.951)	deleterious(0.04)	deleterious(0.743)	superfamily_tRNAsyn_1a_bind
SPACA7	122258	genome.wustl.edu	37	13	113086790	113086790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145248.3	+1	provisional	p.L160I	0.000	161	0%	93	24.7%	0	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
ATP11A	23250	genome.wustl.edu	37	13	113479819	113479819	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418678	+1	known	p.T291I	1.000	100	0%	37	35.1%	4	25%	-	-	-	NULL
ATP11A	23250	genome.wustl.edu	37	13	113514652	113514652	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.L927F	1.000	187	0%	93	29%	23	52.1%	probably_damaging(0.994)	tolerated(0.19)	deleterious(0.502)	superfamily_Calcium ATPase transmembrane domain M
CUL4A	8451	genome.wustl.edu	37	13	113891167	113891167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008895.1	+1	validated	p.Q293H	1.000	137	0%	76	13.2%	74	29.7%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_Cullin,superfamily_Cullin repeat
DCUN1D2	55208	genome.wustl.edu	37	13	114128570	114128570	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014283.1	-1	validated	e4-1	1.000	260	0%	137	14.6%	0	-	-	-	-	-
TFDP1	7027	genome.wustl.edu	37	13	114292158	114292158	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.G344	0.891	91	0%	53	11.3%	186	5.3%	-	-	-	HMMPfam_DP
ATP4B	496	genome.wustl.edu	37	13	114309204	114309204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.A56T	0.693	67	0%	35	20%	0	-	probably_damaging(0.989)	tolerated(0.85)	neutral(0.440)	HMMPfam_Na_K-ATPase
CDC16	8881	genome.wustl.edu	37	13	115007621	115007621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078645.1	+1	reviewed	p.R136H	1.000	296	0%	159	33.3%	70	35.7%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
POTEM	641455	genome.wustl.edu	37	14	20019852	20019852	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145442.1	-1	provisional	p.Y123	0.000	159	0.6%	98	35.7%	0	-	-	-	-	superfamily_ANK
OR4K1	79544	genome.wustl.edu	37	14	20404387	20404387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004063.2	+1	validated	p.A188S	0.987	337	0%	239	18.8%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_7tm_1,superfamily_SSF81321
OR4K15	81127	genome.wustl.edu	37	14	20444639	20444639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005486.1	+1	provisional	p.A321V	0.803	291	0%	201	28.9%	0	-	possibly_damaging(0.498)	deleterious(0.01)	deleterious(0.572)	superfamily_SSF81321
OR4L1	122742	genome.wustl.edu	37	14	20528912	20528912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004717.1	+1	provisional	p.L237M	0.989	305	0.3%	234	28.6%	0	-	benign(0.283)	deleterious(0.03)	neutral(0.452)	HMMPfam_7tm_1,superfamily_SSF81321
PARP2	10038	genome.wustl.edu	37	14	20825912	20825912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005484.3	+1	reviewed	p.R570W	1.000	368	0%	202	25.7%	18	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_ADP-ribosylation
TEP1	7011	genome.wustl.edu	37	14	20871889	20871889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.R396H	0.002	216	0%	138	31.2%	1	0%	benign(0.007)	tolerated(0.09)	neutral(0.296)	HMMPfam_TROVE
RNASE11	122651	genome.wustl.edu	37	14	21052622	21052622	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145250.3	-1	validated	p.F4	0.000	321	0%	212	35.8%	0	-	-	-	-	NULL
ANG	283	genome.wustl.edu	37	14	21162122	21162122	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097577.2	+1	reviewed	p.N133	0.000	319	0%	176	26.1%	7	28.5%	-	-	-	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
LOC100287557	100287557	genome.wustl.edu	37	14	21269745	21269745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343252.1	+1	model	p.A10T	0.000	100	0%	53	20.8%	171	0.5%	-	-	-	NULL
SUPT16H	11198	genome.wustl.edu	37	14	21841580	21841580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007192.3	-1	reviewed	p.D26N	1.000	337	0%	218	33%	31	25.8%	benign(0.026)	tolerated(0.24)	neutral(0.038)	NULL
CHD8	57680	genome.wustl.edu	37	14	21862613	21862613	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.R1529*	1.000	92	1.1%	48	35.4%	18	5.5%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21863188	21863188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.R1479H	1.000	159	0%	90	31.1%	15	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21870169	21870169	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.R1058*	1.000	342	0%	187	28.3%	25	4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21870262	21870262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.L1027I	1.000	215	0.5%	106	29.2%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21876596	21876596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.S590P	1.000	348	0%	212	28.3%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21897480	21897480	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.R7	1.000	123	0%	64	29.7%	5	0%	-	-	-	NULL
TOX4	9878	genome.wustl.edu	37	14	21956944	21956944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014828.2	+1	validated	p.R172C	1.000	295	0%	171	15.8%	54	27.7%	probably_damaging(0.966)	deleterious(0.05)	deleterious(0.753)	NULL
TOX4	9878	genome.wustl.edu	37	14	21957480	21957480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014828.2	+1	validated	p.G243E	1.000	494	0.2%	311	23.8%	34	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
TOX4	9878	genome.wustl.edu	37	14	21961327	21961327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014828.2	+1	validated	p.R518W	1.000	247	0%	168	32.1%	78	52.5%	possibly_damaging(0.938)	deleterious(0.04)	deleterious(0.732)	NULL
METTL3	56339	genome.wustl.edu	37	14	21971601	21971601	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019852.3	-1	reviewed	p.T146	1.000	215	0%	106	29.2%	26	46.1%	-	-	-	NULL
OR10G3	26533	genome.wustl.edu	37	14	22038633	22038633	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005465.1	-1	validated	p.R81	0.487	146	0%	74	25.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OXA1L	5018	genome.wustl.edu	37	14	23239425	23239425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005015.3	+1	validated	p.A263T	0.410	304	0%	157	29.3%	170	47%	benign(0)	tolerated(1)	-	HMMPfam_60KD_IMP
SLC7A7	9056	genome.wustl.edu	37	14	23249241	23249241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126105.1	-1	reviewed	p.N173K	1.000	600	0.2%	407	26.5%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
MMP14	4323	genome.wustl.edu	37	14	23310849	23310849	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004995.2	+1	reviewed	e2+1	1.000	63	0%	27	29.6%	12	100%	-	-	-	-
MMP14	4323	genome.wustl.edu	37	14	23312549	23312549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004995.2	+1	reviewed	p.A258S	1.000	85	0%	40	32.5%	96	8.3%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
PRMT5	10419	genome.wustl.edu	37	14	23390118	23390118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	p.L637I	1.000	163	0%	76	13.2%	87	1.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PRMT5	10419	genome.wustl.edu	37	14	23395506	23395506	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	e7-1	1.000	397	0%	185	29.2%	3	33.3%	-	-	-	-
HAUS4	54930	genome.wustl.edu	37	14	23420773	23420773	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017815.2	-1	reviewed	p.P152	0.948	183	0%	101	29.7%	18	33.3%	-	-	-	NULL
PSMB5	5693	genome.wustl.edu	37	14	23495561	23495561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002797.3	-1	reviewed	p.G177W	1.000	429	0%	270	13.7%	520	23.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SLC7A8	23428	genome.wustl.edu	37	14	23600736	23600736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334354	-1	known	p.P146S	1.000	79	0%	36	44.4%	5	0%	unknown(0)	tolerated(0.11)	-	NULL
BCL2L2	599	genome.wustl.edu	37	14	23777260	23777260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004050.3	+1	reviewed	p.R95H	1.000	51	0%	26	30.8%	20	70%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Bcl-2,HMMSmart_SM00337,PatternScan_BH1,superfamily_Bcl-2 inhibitors of programmed cell death
PABPN1	8106	genome.wustl.edu	37	14	23793180	23793180	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004643.2	+1	reviewed	p.A216	0.157	225	0%	126	31%	239	38.4%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MYH6	4624	genome.wustl.edu	37	14	23855802	23855802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002471.3	-1	validated	p.L1561I	1.000	189	0%	83	31.3%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Myosin_tail_1
MIR208B	100126336	genome.wustl.edu	37	14	23887212	23887212	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000401172	-1	known	NULL	1.000	125	0%	79	30.4%	0	-	-	-	-	-
MYH7	4625	genome.wustl.edu	37	14	23889132	23889132	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.K1216	1.000	193	0%	124	17.7%	1	0%	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
MYH7	4625	genome.wustl.edu	37	14	23898515	23898515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.D394N	1.000	408	0.2%	211	28%	0	-	possibly_damaging(0.87)	deleterious(0.02)	deleterious(0.721)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH7	4625	genome.wustl.edu	37	14	23901906	23901906	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.S148	0.424	393	0%	204	28.9%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NGDN	25983	genome.wustl.edu	37	14	23944953	23944953	+	Missense_Mutation	SNP	G	G	A	rs182201186	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042635.1	+1	validated	p.R129H	0.999	323	0.3%	193	28.5%	50	36%	benign(0.341)	tolerated(0.28)	neutral(0.139)	NULL
NGDN	25983	genome.wustl.edu	37	14	23946746	23946746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042635.1	+1	validated	p.P302H	0.005	270	0.4%	134	22.4%	31	48.3%	unknown(0)	tolerated(0.07)	-	NULL
DHRS2	10202	genome.wustl.edu	37	14	24108391	24108391	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182908.4	+1	validated	p.I48	0.623	124	0%	58	29.3%	1	0%	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-bd
LRRC16B	90668	genome.wustl.edu	37	14	24535833	24535833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138360.3	+1	validated	p.A1217D	1.000	149	0.7%	94	36.2%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
FITM1	161247	genome.wustl.edu	37	14	24601521	24601521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203402.2	+1	validated	p.R123K	0.995	61	0%	24	41.7%	4	25%	benign(0.07)	tolerated(0.16)	neutral(0.065)	HMMPfam_Scs3p
PSME2	5721	genome.wustl.edu	37	14	24613226	24613226	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002818.2	-1	reviewed	p.E170	1.000	259	0.4%	141	31.9%	291	32.9%	-	-	-	HMMPfam_PA28_beta,superfamily_Prot_act_regA
RNF31	55072	genome.wustl.edu	37	14	24619946	24619946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.R446Q	0.000	170	0.6%	68	10.3%	21	19%	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
RNF31	55072	genome.wustl.edu	37	14	24629122	24629122	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017999.4	+1	validated	p.D983	0.139	315	0%	161	23%	26	26.9%	-	-	-	NULL
TM9SF1	10548	genome.wustl.edu	37	14	24658772	24658772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006405.5	-1	validated	p.R557H	1.000	183	0.5%	89	31.5%	98	41.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_EMP70
TSSK4	283629	genome.wustl.edu	37	14	24677206	24677206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174944.3	+1	reviewed	p.R281C	1.000	389	0%	175	15.4%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MDP1	145553	genome.wustl.edu	37	14	24683257	24683257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396833	-1	known	p.P122S	0.138	271	0%	122	27.9%	19	57.8%	benign(0.014)	-	-	NULL
GMPR2	51292	genome.wustl.edu	37	14	24702774	24702774	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016576.3	+1	validated	p.G77	1.000	196	0%	73	21.9%	42	42.8%	-	-	-	HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)
GMPR2	51292	genome.wustl.edu	37	14	24707487	24707487	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016576.3	+1	validated	p.L263	1.000	85	0%	36	27.8%	54	40.7%	-	-	-	HMMPfam_IMPDH,superfamily_Inosine monophosphate dehydrogenase (IMPDH)
TGM1	7051	genome.wustl.edu	37	14	24718631	24718631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	p.V781A	1.000	42	0%	19	21.1%	0	-	possibly_damaging(0.807)	tolerated(0.21)	neutral(0.348)	HMMPfam_Transglut_C,superfamily_Transglut_C
TGM1	7051	genome.wustl.edu	37	14	24727595	24727595	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	e8-1	1.000	54	0%	15	33.3%	0	-	-	-	-	-
TGM1	7051	genome.wustl.edu	37	14	24731452	24731452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	p.R36H	0.026	47	0%	17	29.4%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
LTB4R2	56413	genome.wustl.edu	37	14	24780695	24780695	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019839.4	+1	validated	p.A306	0.004	36	0%	15	40%	2	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ADCY4	196883	genome.wustl.edu	37	14	24787904	24787904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139247.2	-1	reviewed	p.V1013M	1.000	88	0%	38	18.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
ADCY4	196883	genome.wustl.edu	37	14	24788644	24788644	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139247.2	-1	reviewed	e22-2	1.000	76	0%	40	37.5%	0	-	-	-	-	-
RIPK3	11035	genome.wustl.edu	37	14	24806337	24806337	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006871.3	-1	reviewed	p.S410	0.000	137	0%	56	23.2%	1	0%	-	-	-	NULL
NFATC4	4776	genome.wustl.edu	37	14	24838784	24838784	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136022.1	+1	reviewed	p.G123	0.997	144	0%	78	24.4%	0	-	-	-	-	NULL
NFATC4	4776	genome.wustl.edu	37	14	24838873	24838873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136022.1	+1	reviewed	p.A153V	0.963	55	0%	30	16.7%	1	0%	possibly_damaging(0.668)	deleterious(0.03)	deleterious(0.601)	NULL
NFATC4	4776	genome.wustl.edu	37	14	24839240	24839240	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136022.1	+1	reviewed	p.G275	0.996	32	0%	19	31.6%	3	33.3%	-	-	-	NULL
NFATC4	4776	genome.wustl.edu	37	14	24839788	24839788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136022.1	+1	reviewed	p.S458I	1.000	59	0%	27	33.3%	4	0%	probably_damaging(0.998)	tolerated(0.11)	deleterious(0.746)	NULL
NYNRIN	57523	genome.wustl.edu	37	14	24885568	24885568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.T1538M	0.255	39	0%	23	17.4%	3	33.3%	benign(0.112)	deleterious(0.04)	neutral(0.358)	NULL
KHNYN	23351	genome.wustl.edu	37	14	24901227	24901227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015299.2	+1	validated	p.A254T	0.000	59	0%	24	29.2%	1	0%	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CTSG	1511	genome.wustl.edu	37	14	25044565	25044565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001911.2	-1	reviewed	p.Y37H	0.005	290	0%	156	40.4%	0	-	benign(0.017)	tolerated(0.45)	neutral(0.013)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
NOVA1	4857	genome.wustl.edu	37	14	26917827	26917827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002515.2	-1	reviewed	p.L288I	1.000	154	0%	85	27.1%	0	-	benign(0.03)	deleterious(0.05)	neutral(0.347)	NULL
ENSG00000197358	0	genome.wustl.edu	37	14	28734164	28734164	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355069	+1	known	p.N135	0.957	169	0%	88	23.9%	38	0%	-	-	-	NULL
HECTD1	25831	genome.wustl.edu	37	14	31598583	31598583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.L1332I	1.000	208	0%	145	29.7%	18	61.1%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_MIB_HERC2
HECTD1	25831	genome.wustl.edu	37	14	31604111	31604111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.T1182I	1.000	282	0%	212	25.9%	23	39.1%	possibly_damaging(0.853)	deleterious(0.01)	deleterious(0.734)	superfamily_Galactose-binding domain-like,HMMPfam_Sad1_UNC
HEATR5A	25938	genome.wustl.edu	37	14	31844075	31844075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015473.2	-1	validated	p.G310V	1.000	126	0%	59	22%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
ARHGAP5	394	genome.wustl.edu	37	14	32559968	32559968	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.G31	0.986	402	0.2%	265	32.5%	20	30%	-	-	-	HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGAP5	394	genome.wustl.edu	37	14	32560947	32560947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.H358Y	1.000	607	0%	402	29.6%	11	27.2%	benign(0.133)	tolerated(0.41)	neutral(0.026)	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32561988	32561988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.D705Y	1.000	470	0%	291	25.8%	19	52.6%	benign(0.049)	deleterious(0.05)	neutral(0.348)	NULL
AKAP6	9472	genome.wustl.edu	37	14	33243039	33243039	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.A1176	1.000	199	0%	174	30.5%	1	0%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
AKAP6	9472	genome.wustl.edu	37	14	33291250	33291250	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004274.4	+1	reviewed	p.Q1411*	1.000	256	0%	214	30.8%	0	-	-	-	-	NULL
NPAS3	64067	genome.wustl.edu	37	14	33684632	33684632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173159.2	+1	reviewed	p.G99W	1.000	100	0%	98	14.3%	8	12.5%	possibly_damaging(0.923)	tolerated(0.14)	deleterious(0.622)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35231173	35231173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.A1345T	1.000	383	0%	244	34.4%	20	75%	probably_damaging(0.982)	tolerated(0.22)	neutral(0.468)	NULL
BAZ1A	11177	genome.wustl.edu	37	14	35245608	35245608	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013448.2	-1	validated	p.R784*	0.891	296	0.3%	211	30.8%	9	22.2%	-	-	-	NULL
PPP2R3C	55012	genome.wustl.edu	37	14	35579108	35579108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017917.2	-1	provisional	p.Q107H	1.000	263	0%	157	27.4%	13	38.4%	-	-	-	superfamily_EF-hand
PSMA6	5687	genome.wustl.edu	37	14	35761686	35761686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002791.1	+1	reviewed	p.S2P	1.000	66	0%	49	20.4%	239	30.5%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36008798	36008798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194301.2	-1	provisional	p.R2068C	1.000	111	0%	51	17.6%	15	86.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36104693	36104693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194301.2	-1	provisional	p.S1424P	1.000	190	0%	108	14.8%	7	0%	benign(0.062)	tolerated(0.42)	neutral(0.018)	NULL
RALGAPA1	253959	genome.wustl.edu	37	14	36154163	36154163	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194301.2	-1	provisional	p.A916	0.998	90	0%	58	13.8%	4	0%	-	-	-	NULL
BRMS1L	84312	genome.wustl.edu	37	14	36333147	36333147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032352.3	+1	reviewed	p.V204F	1.000	238	0.4%	157	28.7%	4	25%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_Sds3
SSTR1	6751	genome.wustl.edu	37	14	38679680	38679680	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001049.2	+1	reviewed	p.A362	0.544	106	0%	69	15.9%	0	-	-	-	-	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724071	38724071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.S386F	0.006	128	0%	52	23.1%	15	0%	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724103	38724103	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.S375	0.000	150	0.7%	54	24.1%	13	0%	-	-	-	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724408	38724408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.A274T	0.953	142	0%	64	26.6%	10	0%	possibly_damaging(0.815)	tolerated(0.34)	neutral(0.331)	HMMSmart_EGF,PatternScan_EGF_2,superfamily_SSF57196
CLEC14A	161198	genome.wustl.edu	37	14	38724733	38724733	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.R165	0.960	65	0%	28	35.7%	10	0%	-	-	-	HMMSmart_CLECT,superfamily_C-type_lectin_fold
SEC23A	10484	genome.wustl.edu	37	14	39512039	39512039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006364.2	-1	reviewed	p.R646H	1.000	257	0%	146	28.1%	27	51.8%	probably_damaging(0.979)	tolerated(0.22)	neutral(0.464)	HMMPfam_Gelsolin,superfamily_SSF82754
SEC23A	10484	genome.wustl.edu	37	14	39555009	39555009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006364.2	-1	reviewed	p.R262H	1.000	530	0%	323	25.7%	39	51.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec23_trunk,superfamily_SSF53300,superfamily_SSF81995
GEMIN2	8487	genome.wustl.edu	37	14	39601217	39601217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003616.2	+1	reviewed	p.A230V	1.000	204	0.5%	135	12.6%	52	11.5%	benign(0.013)	tolerated(0.09)	neutral(0.297)	HMMPfam_SIP1
MIA2	117153	genome.wustl.edu	37	14	39717154	39717154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054024.3	+1	validated	p.K459T	0.001	293	0%	228	25%	0	-	possibly_damaging(0.671)	deleterious(0.01)	deleterious(0.643)	NULL
FSCB	84075	genome.wustl.edu	37	14	44973989	44973989	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032135.3	-1	validated	p.A734	0.000	202	0%	104	24%	0	-	-	-	-	NULL
FSCB	84075	genome.wustl.edu	37	14	44974680	44974680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032135.3	-1	validated	p.A504D	0.000	137	0%	73	31.5%	0	-	possibly_damaging(0.847)	tolerated(0.61)	neutral(0.329)	NULL
FAM179B	23116	genome.wustl.edu	37	14	45431819	45431819	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.S65	0.034	79	0%	35	31.4%	2	0%	-	-	-	NULL
PRPF39	55015	genome.wustl.edu	37	14	45578918	45578918	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017922.3	+1	validated	p.R371*	1.000	55	0%	34	32.4%	19	26.3%	-	-	-	HMMSmart_SM00386,superfamily_TPR-like
FANCM	57697	genome.wustl.edu	37	14	45628483	45628483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.E527D	1.000	165	0%	95	24.2%	0	-	benign(0.043)	tolerated(0.16)	neutral(0.062)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MIS18BP1	55320	genome.wustl.edu	37	14	45675304	45675304	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018353.4	-1	validated	p.G1074	1.000	153	0%	110	20.9%	18	72.2%	-	-	-	NULL
RPL10L	140801	genome.wustl.edu	37	14	47120311	47120311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080746.2	-1	reviewed	p.R210Q	1.000	152	0%	92	22.8%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	NULL
MDGA2	161357	genome.wustl.edu	37	14	47600939	47600939	+	Silent	SNP	C	C	T	rs189572619	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113498.1	-1	validated	p.S232	0.590	140	0%	127	11%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
ENSG00000248934	0	genome.wustl.edu	37	14	50089350	50089350	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504161	-1	novel	NULL	0.917	105	0%	42	40.5%	38	57.8%	-	-	-	-
ENSG00000248934	0	genome.wustl.edu	37	14	50089546	50089546	+	RNA	SNP	C	C	A	rs147608450	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504161	-1	novel	NULL	0.001	9	0.000	8	0.500	24	37.5%	-	-	-	-
POLE2	5427	genome.wustl.edu	37	14	50150360	50150360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002692.2	-1	provisional	p.E40D	1.000	155	0%	81	23.5%	2	0%	benign(0.107)	deleterious(0.03)	neutral(0.373)	NULL
KLHDC1	122773	genome.wustl.edu	37	14	50199444	50199444	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172193.2	+1	validated	p.P245T	1.000	165	0%	125	15.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose oxidase central domain
KLHDC1	122773	genome.wustl.edu	37	14	50218490	50218490	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172193.2	+1	validated	p.*407Y	0.826	174	0%	100	38%	0	-	-	-	-	NULL
NEMF	9147	genome.wustl.edu	37	14	50262614	50262614	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004713.3	-1	validated	p.A838	0.000	217	0%	130	23.8%	19	52.6%	-	-	-	NULL
SOS2	6655	genome.wustl.edu	37	14	50611954	50611954	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006939.2	-1	validated	p.N867	1.000	209	0%	136	27.9%	6	33.3%	-	-	-	HMMPfam_RasGEF,HMMSmart_RasGEF,superfamily_Ras_GEF
L2HGDH	79944	genome.wustl.edu	37	14	50734550	50734550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024884.2	-1	reviewed	p.A329T	1.000	457	0.2%	280	26.4%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
CDKL1	8814	genome.wustl.edu	37	14	50809701	50809701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356146	-1	known	p.A768T	0.002	50	0%	37	18.9%	0	-	-	-	-	superfamily_Kinase_like
ATL1	51062	genome.wustl.edu	37	14	51054666	51054666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015915.4	+1	reviewed	p.T51N	0.308	381	0.3%	257	24.1%	8	50%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
NIN	51199	genome.wustl.edu	37	14	51210135	51210135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020921.3	-1	reviewed	p.K1767R	1.000	118	0%	73	19.2%	12	41.6%	possibly_damaging(0.817)	tolerated(0.39)	neutral(0.325)	NULL
NIN	51199	genome.wustl.edu	37	14	51224178	51224178	+	Missense_Mutation	SNP	C	C	A	rs185029649	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020921.3	-1	reviewed	p.R1190S	0.344	474	0%	294	28.6%	2	0%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
ABHD12B	145447	genome.wustl.edu	37	14	51352339	51352339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181814.1	+1	validated	p.S88N	1.000	260	0%	145	26.9%	0	-	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	superfamily_SSF53474
TRIM9	114088	genome.wustl.edu	37	14	51475871	51475871	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.T411	0.242	304	0%	143	30.1%	0	-	-	-	-	NULL
TRIM9	114088	genome.wustl.edu	37	14	51477173	51477173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.R361C	1.000	355	0%	191	28.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00502
FRMD6	122786	genome.wustl.edu	37	14	52169236	52169236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042481.1	+1	validated	p.D93N	1.000	401	0%	327	24.8%	3	33.3%	possibly_damaging(0.895)	tolerated(0.09)	deleterious(0.649)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
C14orf166	51637	genome.wustl.edu	37	14	52466429	52466429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016039.2	+1	validated	p.N126T	1.000	121	0%	84	23.8%	318	44.6%	possibly_damaging(0.72)	tolerated(0.36)	neutral(0.281)	HMMPfam_RLL
NID2	22795	genome.wustl.edu	37	14	52477679	52477679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.A1213T	0.986	311	0%	172	22.7%	5	20%	possibly_damaging(0.858)	deleterious(0.03)	deleterious(0.696)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
NID2	22795	genome.wustl.edu	37	14	52495538	52495538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.R811H	0.003	194	0%	110	26.4%	2	0%	benign(0.007)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
NID2	22795	genome.wustl.edu	37	14	52508917	52508917	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.A577	0.999	145	0%	80	37.5%	1	0%	-	-	-	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
NID2	22795	genome.wustl.edu	37	14	52508981	52508981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.A556V	1.000	154	0%	65	21.5%	4	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
PSMC6	5706	genome.wustl.edu	37	14	53190704	53190704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002806.3	+1	reviewed	p.L348R	1.000	220	0%	139	26.6%	146	34.2%	benign(0.006)	deleterious(0.02)	neutral(0.383)	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
BMP4	652	genome.wustl.edu	37	14	54416789	54416789	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001202.3	-1	reviewed	p.N396K	1.000	242	0%	107	35.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
BMP4	652	genome.wustl.edu	37	14	54417227	54417227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001202.3	-1	reviewed	p.Q250H	1.000	227	0%	137	23.4%	6	0%	benign(0.247)	tolerated(0.31)	neutral(0.052)	HMMPfam_TGFb_propeptide
DLGAP5	9787	genome.wustl.edu	37	14	55636159	55636159	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014750.4	-1	validated	p.T502	0.985	342	0%	164	36%	26	50%	-	-	-	HMMPfam_GKAP
ATG14	22863	genome.wustl.edu	37	14	55848902	55848902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014924.3	-1	provisional	p.A219T	0.982	233	0%	109	26.6%	8	50%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_DUF2355
TBPL2	387332	genome.wustl.edu	37	14	55907215	55907215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199047.2	-1	validated	p.R17C	0.000	27	0%	17	41.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
KTN1	3895	genome.wustl.edu	37	14	56101318	56101318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.K468R	1.000	217	0%	173	12.1%	82	34.1%	possibly_damaging(0.582)	tolerated(0.31)	neutral(0.227)	NULL
PELI2	57161	genome.wustl.edu	37	14	56763595	56763595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021255.2	+1	validated	p.R325Q	1.000	129	0%	67	29.9%	0	-	benign(0.269)	tolerated(0.53)	neutral(0.036)	HMMPfam_Pellino
C14orf101	54916	genome.wustl.edu	37	14	57085351	57085351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017799.3	+1	validated	p.V366I	0.998	141	0%	87	23%	9	55.5%	possibly_damaging(0.934)	tolerated(0.66)	neutral(0.383)	NULL
C14orf101	54916	genome.wustl.edu	37	14	57092212	57092212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017799.3	+1	validated	p.T504I	0.999	285	0%	178	22.5%	6	33.3%	benign(0.282)	tolerated(0.08)	neutral(0.386)	NULL
OTX2	5015	genome.wustl.edu	37	14	57271027	57271027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021728.2	-1	reviewed	p.T51M	1.000	36	0%	26	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
EXOC5	10640	genome.wustl.edu	37	14	57713467	57713467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006544.3	-1	reviewed	p.F78I	1.000	446	0%	360	26.7%	9	33.3%	possibly_damaging(0.849)	tolerated(0.24)	neutral(0.363)	NULL
SLC35F4	341880	genome.wustl.edu	37	14	58031072	58031072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080455.1	-1	provisional	p.E449D	1.000	162	0.6%	141	11.3%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58563688	58563688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.D615Y	1.000	158	0%	104	26%	1	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
C14orf37	145407	genome.wustl.edu	37	14	58606092	58606092	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438670	-1	known	p.C13	0.004	187	0%	99	21.2%	0	-	-	-	-	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58909423	58909423	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	e5-1	0.995	40	0%	27	29.6%	0	-	-	-	-	-
DACT1	51339	genome.wustl.edu	37	14	59112329	59112329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016651.5	+1	validated	p.S330A	0.510	187	0.5%	82	30.5%	0	-	benign(0.151)	tolerated(1)	neutral(0.013)	NULL
DACT1	51339	genome.wustl.edu	37	14	59113577	59113577	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016651.5	+1	validated	p.Q746*	0.780	158	0%	65	24.6%	3	0%	-	-	-	NULL
JKAMP	51528	genome.wustl.edu	37	14	59961886	59961886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016475.3	+1	validated	p.N134K	1.000	245	0%	101	19.8%	84	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF766
RTN1	6252	genome.wustl.edu	37	14	60212572	60212572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021136.2	-1	reviewed	p.P290H	0.017	438	0%	343	12%	1	0%	probably_damaging(0.987)	tolerated(0.15)	deleterious(0.677)	NULL
RTN1	6252	genome.wustl.edu	37	14	60212708	60212708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021136.2	-1	reviewed	p.V245M	0.980	770	0.1%	636	27.4%	5	0%	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
RTN1	6252	genome.wustl.edu	37	14	60213102	60213102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021136.2	-1	reviewed	p.C113*	0.042	233	0%	194	37.1%	0	-	-	-	-	NULL
C14orf135	64430	genome.wustl.edu	37	14	60591100	60591100	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.S503	1.000	138	0%	97	30.9%	20	70%	-	-	-	NULL
C14orf135	64430	genome.wustl.edu	37	14	60600866	60600866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.T915M	1.000	560	0%	423	29.8%	54	38.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Pecanex_C
PPM1A	5494	genome.wustl.edu	37	14	60749956	60749956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177952.2	+1	reviewed	p.G252S	1.000	302	0%	185	28.6%	59	59.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PRKCH	5583	genome.wustl.edu	37	14	61997194	61997194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006255.3	+1	reviewed	p.L548I	1.000	222	0.5%	114	36.8%	11	18.1%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HIF1A	3091	genome.wustl.edu	37	14	62207880	62207880	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.N689	0.755	296	0%	186	31.2%	189	43.3%	-	-	-	NULL
SYT16	83851	genome.wustl.edu	37	14	62567384	62567384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031914.2	+1	validated	p.G633C	1.000	166	0%	118	20.3%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_C2,superfamily_C2_CaLB
KCNH5	27133	genome.wustl.edu	37	14	63179413	63179413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172376.1	-1	reviewed	p.A623T	0.001	78	0%	48	43.8%	0	-	unknown(0)	tolerated(0.18)	-	NULL
PPP2R5E	5529	genome.wustl.edu	37	14	63920601	63920601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006246.2	-1	reviewed	p.V54I	1.000	295	0%	142	31.7%	40	57.5%	benign(0.017)	deleterious(0.01)	neutral(0.406)	HMMPfam_B56
WDR89	112840	genome.wustl.edu	37	14	64066033	64066033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008726.1	-1	validated	p.V210I	0.898	329	0.3%	175	28.6%	19	57.8%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMSmart_WD40,superfamily_WD40_like
WDR89	112840	genome.wustl.edu	37	14	64066239	64066239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008726.1	-1	validated	p.A141V	0.998	242	0%	126	34.9%	12	50%	possibly_damaging(0.903)	tolerated(0.33)	neutral(0.382)	superfamily_WD40_like
SGPP1	81537	genome.wustl.edu	37	14	64153129	64153129	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030791.2	-1	provisional	p.G340	1.000	134	0%	98	25.5%	13	38.4%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64518781	64518781	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.E2717V	0.406	411	0%	243	16.9%	3	33.3%	probably_damaging(0.999)	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64560171	64560171	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.D4027	0.250	489	0%	265	20.8%	8	0%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64565527	64565527	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.S4123	0.184	182	0.5%	106	28.3%	1	100%	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64692048	64692048	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.S6843T	0.008	62	0%	42	21.4%	41	24.3%	unknown(0)	-	-	NULL
MTHFD1	4522	genome.wustl.edu	37	14	64915022	64915022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005956.3	+1	reviewed	p.V756M	0.998	65	0%	37	27%	123	40.6%	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB25	7597	genome.wustl.edu	37	14	64954376	64954376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006977.2	-1	validated	p.Q191H	1.000	217	0%	143	33.6%	7	57.1%	possibly_damaging(0.66)	tolerated(0.16)	neutral(0.292)	NULL
PLEKHG3	26030	genome.wustl.edu	37	14	65198135	65198135	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015549.1	+1	validated	p.E246	0.999	68	0%	32	46.9%	16	18.7%	-	-	-	superfamily_SSF50729
PLEKHG3	26030	genome.wustl.edu	37	14	65198226	65198226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015549.1	+1	validated	p.R277W	1.000	106	0%	57	24.6%	19	21%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SPTB	6710	genome.wustl.edu	37	14	65251054	65251054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.A1305S	1.000	164	0%	85	22.4%	0	-	possibly_damaging(0.865)	tolerated(0.18)	neutral(0.391)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65266644	65266644	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.D295	1.000	201	0%	116	25.9%	0	-	-	-	-	superfamily_Spectrin
SPTB	6710	genome.wustl.edu	37	14	65268476	65268476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.H215N	1.000	398	0%	189	22.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
FUT8	2530	genome.wustl.edu	37	14	66083055	66083055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178154.1	+1	reviewed	p.A149V	0.988	260	0%	162	10.5%	6	33.3%	benign(0)	tolerated(1)	-	NULL
GPHN	10243	genome.wustl.edu	37	14	67631904	67631904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020806.4	+1	reviewed	p.D646N	1.000	156	0%	97	25.8%	21	47.6%	benign(0.006)	tolerated(0.4)	neutral(0.016)	HMMPfam_MoCF_biosynth,superfamily_MoCF_biosynth
GPHN	10243	genome.wustl.edu	37	14	67635749	67635749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020806.4	+1	reviewed	p.A692V	1.000	228	0%	130	12.3%	14	0%	benign(0.094)	tolerated(0.42)	neutral(0.021)	HMMPfam_MoeA_C,superfamily_MoeA_C
GPHN	10243	genome.wustl.edu	37	14	67647646	67647646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020806.4	+1	reviewed	p.R768W	1.000	80	0%	53	24.5%	19	21%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MoeA_C
FAM71D	161142	genome.wustl.edu	37	14	67665007	67665007	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173526.2	+1	validated	p.S43	0.995	546	0%	333	18.9%	0	-	-	-	-	NULL
MPP5	64398	genome.wustl.edu	37	14	67746178	67746178	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022474.2	+1	validated	p.T97	1.000	282	0.4%	195	29.2%	14	64.2%	-	-	-	NULL
ATP6V1D	51382	genome.wustl.edu	37	14	67817377	67817377	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015994.2	-1	reviewed	p.E64*	1.000	139	0.7%	91	12.1%	61	1.6%	-	-	-	HMMPfam_ATP-synt_D
TMEM229B	161145	genome.wustl.edu	37	14	67940636	67940636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182526.2	-1	provisional	p.A2V	0.995	15	0.000	7	0.571	2	100%	benign(0.075)	deleterious(0.02)	neutral(0.388)	NULL
PLEKHH1	57475	genome.wustl.edu	37	14	68029026	68029026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020715.2	+1	validated	p.K226N	0.594	78	0%	42	31%	9	22.2%	possibly_damaging(0.602)	tolerated(0.12)	deleterious(0.469)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68249698	68249698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.L1391F	0.247	213	0%	131	29%	6	0%	benign(0.214)	deleterious(0.02)	neutral(0.404)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68249963	68249963	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.S1302	0.844	223	0%	116	31.9%	10	30%	-	-	-	NULL
ACTN1	87	genome.wustl.edu	37	14	69351509	69351509	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.R493*	1.000	177	0%	97	26.8%	63	3.1%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ACTN1	87	genome.wustl.edu	37	14	69392372	69392372	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.C41	1.000	121	0%	65	32.3%	47	2.1%	-	-	-	PatternScan_ACTININ_1,HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
DCAF5	8816	genome.wustl.edu	37	14	69619497	69619497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003861.2	-1	validated	p.Q67K	1.000	32	0%	20	45%	7	14.2%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
EXD2	55218	genome.wustl.edu	37	14	69704349	69704349	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018199.2	+1	provisional	p.H325	1.000	131	0%	81	13.6%	31	29%	-	-	-	NULL
SLC8A3	6547	genome.wustl.edu	37	14	70635060	70635060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183002.1	-1	reviewed	p.G27D	1.000	157	0%	92	29.3%	0	-	possibly_damaging(0.496)	tolerated(0.26)	neutral(0.200)	NULL
ENSG00000235812	0	genome.wustl.edu	37	14	70713701	70713701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433248	-1	known	p.S56I	0.001	353	0%	219	22.4%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SYNJ2BP	55333	genome.wustl.edu	37	14	70839815	70839815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018373.2	-1	validated	p.G111C	0.976	252	0.4%	161	27.3%	27	48.1%	benign(0.192)	tolerated(0.08)	neutral(0.318)	superfamily_PDZ
ADAM21	8747	genome.wustl.edu	37	14	70925692	70925692	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003813.2	+1	reviewed	p.D492	0.997	448	0%	243	25.9%	0	-	-	-	-	HMMPfam_ADAM_CR,HMMSmart_SM00608
ADAM20	8748	genome.wustl.edu	37	14	70991061	70991061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003814.4	-1	reviewed	p.I188M	0.957	419	0%	321	25.5%	0	-	possibly_damaging(0.936)	deleterious(0.05)	deleterious(0.727)	HMMPfam_Pep_M12B_propep
MAP3K9	4293	genome.wustl.edu	37	14	71197583	71197583	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033141.2	-1	validated	e13-2	1.000	44	0%	22	54.5%	0	-	-	-	-	-
PCNX	22990	genome.wustl.edu	37	14	71444211	71444211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.C386Y	1.000	323	0%	172	34.9%	7	71.4%	unknown(0)	tolerated(0.33)	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71455352	71455352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.R794W	0.999	284	0%	125	31.2%	2	0%	possibly_damaging(0.737)	deleterious(0)	deleterious(0.714)	NULL
PCNX	22990	genome.wustl.edu	37	14	71575562	71575562	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.S2181	0.438	139	0%	78	28.2%	28	50%	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71575680	71575680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.A2221T	0.996	173	0%	85	30.6%	20	50%	possibly_damaging(0.83)	tolerated(0.48)	neutral(0.326)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72117175	72117175	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.R648*	1.000	421	0%	283	25.4%	8	25%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L1	26037	genome.wustl.edu	37	14	72128131	72128131	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.H734	0.946	140	0%	107	23.4%	15	60%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
SIPA1L1	26037	genome.wustl.edu	37	14	72200431	72200431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.R1658H	0.610	93	0%	31	45.2%	31	58%	benign(0.084)	tolerated(0.16)	neutral(0.066)	NULL
NUMB	8650	genome.wustl.edu	37	14	73743684	73743684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005743.1	-1	reviewed	p.P520S	0.974	51	0%	29	24.1%	79	27.8%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
HEATR4	399671	genome.wustl.edu	37	14	73989255	73989255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203309.1	-1	provisional	p.A154V	0.971	116	0%	51	21.6%	0	-	probably_damaging(0.975)	deleterious(0.04)	deleterious(0.766)	NULL
ACOT2	10965	genome.wustl.edu	37	14	74035946	74035946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006821.4	+1	validated	p.M1T	0.005	214	0.5%	119	28.6%	19	42.1%	unknown(0)	-	-	NULL
ACOT2	10965	genome.wustl.edu	37	14	74042125	74042125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006821.4	+1	validated	p.A454T	0.793	499	0%	293	17.7%	31	9.6%	benign(0.263)	deleterious(0.01)	neutral(0.433)	HMMPfam_BAAT_C,superfamily_alpha/beta-Hydrolases
ACOT4	122970	genome.wustl.edu	37	14	74062326	74062326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152331.3	+1	validated	p.G412C	0.000	150	0%	73	24.7%	9	33.3%	possibly_damaging(0.924)	tolerated(0.06)	deleterious(0.696)	HMMPfam_BAAT_C
ACOT6	641372	genome.wustl.edu	37	14	74086200	74086200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037162.1	+1	validated	p.L94R	0.910	306	0%	147	15%	0	-	benign(0.088)	deleterious(0.01)	neutral(0.412)	HMMPfam_BAAT_C,superfamily_SSF53474
ENTPD5	957	genome.wustl.edu	37	14	74438596	74438596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001249.2	-1	reviewed	p.G348A	1.000	826	0%	446	16.6%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
C14orf45	80127	genome.wustl.edu	37	14	74523863	74523863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025057.2	+1	validated	p.Q494*	0.077	169	0%	105	30.5%	7	57.1%	-	-	-	NULL
VSX2	338917	genome.wustl.edu	37	14	74711935	74711935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182894.2	+1	reviewed	p.V175I	1.000	106	0%	64	25%	0	-	possibly_damaging(0.932)	deleterious(0.01)	deleterious(0.784)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PROX2	283571	genome.wustl.edu	37	14	75329595	75329595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080408.1	-1	provisional	p.P315T	0.002	243	0.4%	130	30%	0	-	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	NULL
RPS6KL1	83694	genome.wustl.edu	37	14	75376246	75376246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031464.3	-1	validated	p.G393C	1.000	30	0%	11	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
PGF	5228	genome.wustl.edu	37	14	75413455	75413455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000405431	-1	known	p.G197R	0.020	12	0.000	9	0.444	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MLH3	27030	genome.wustl.edu	37	14	75509149	75509149	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.S1104	0.996	272	0%	153	35.9%	12	8.3%	-	-	-	NULL
ZC2HC1C	79696	genome.wustl.edu	37	14	75537606	75537606	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024643.2	+1	validated	p.S110	0.000	1181	0%	666	16.2%	2	0%	-	-	-	NULL
TTLL5	23093	genome.wustl.edu	37	14	76165559	76165559	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.W177*	1.000	185	0%	107	26.2%	5	20%	-	-	-	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like
TTLL5	23093	genome.wustl.edu	37	14	76249520	76249520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.K878T	0.998	586	0%	434	27.2%	18	50%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
AHSA1	10598	genome.wustl.edu	37	14	77928570	77928570	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012111.2	+1	validated	p.S113	1.000	112	0%	59	27.1%	219	35.1%	-	-	-	HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1
AHSA1	10598	genome.wustl.edu	37	14	77935515	77935515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012111.2	+1	validated	p.R314W	1.000	161	0.6%	81	27.2%	305	45.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_AHSA1,superfamily_Bet v1-like
ISM2	145501	genome.wustl.edu	37	14	77942418	77942418	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199296.2	-1	reviewed	p.S412	0.891	81	0%	44	13.6%	0	-	-	-	-	HMMPfam_AMOP,HMMSmart_SM00723
ISM2	145501	genome.wustl.edu	37	14	77948681	77948681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199296.2	-1	reviewed	p.K319N	0.921	78	0%	41	26.8%	0	-	possibly_damaging(0.707)	tolerated(0.3)	neutral(0.284)	NULL
SPTLC2	9517	genome.wustl.edu	37	14	78063721	78063721	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004863.2	-1	validated	p.I45	0.997	216	0%	135	27.4%	13	30.7%	-	-	-	NULL
SNW1	22938	genome.wustl.edu	37	14	78198920	78198920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012245.2	-1	reviewed	p.R267C	1.000	188	0%	101	35.6%	57	40.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SKIP_SNW
ADCK1	57143	genome.wustl.edu	37	14	78392232	78392232	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020421.3	+1	validated	p.A378	1.000	283	0%	181	11.6%	12	33.3%	-	-	-	NULL
NRXN3	9369	genome.wustl.edu	37	14	79270142	79270142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.R369C	0.969	188	0%	128	29.7%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NRXN3	9369	genome.wustl.edu	37	14	79454449	79454449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.S703Y	1.000	267	0%	171	30.4%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl
FLRT2	23768	genome.wustl.edu	37	14	86089757	86089757	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013231.4	+1	reviewed	p.G633	1.000	562	0.2%	284	23.9%	0	-	-	-	-	NULL
GPR65	8477	genome.wustl.edu	37	14	88477276	88477277	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003608.3	+1	validated	p.P30fs	0.002:0.545	-	-	-	-	-	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
KCNK10	54207	genome.wustl.edu	37	14	88652224	88652224	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138317.2	-1	reviewed	p.R429	0.979	117	0%	58	17.2%	0	-	-	-	-	NULL
ZC3H14	79882	genome.wustl.edu	37	14	89034493	89034493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024824.4	+1	validated	p.V64I	0.998	79	0%	45	11.1%	42	19%	possibly_damaging(0.946)	tolerated(0.18)	neutral(0.446)	NULL
ZC3H14	79882	genome.wustl.edu	37	14	89075730	89075730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024824.4	+1	validated	p.V663A	0.075	160	0%	86	26.7%	157	49%	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
EML5	161436	genome.wustl.edu	37	14	89148307	89148307	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183387.2	-1	validated	p.S1017	1.000	401	0%	211	30.3%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40
EML5	161436	genome.wustl.edu	37	14	89181408	89181408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183387.2	-1	validated	p.R440H	1.000	242	0%	163	26.4%	0	-	benign(0.309)	tolerated(0.2)	neutral(0.146)	superfamily_WD40 repeat-like
EFCAB11	90141	genome.wustl.edu	37	14	90398890	90398890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145231.2	-1	validated	p.F100Y	1.000	163	0.6%	135	29.6%	22	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,superfamily_EF-hand
KCNK13	56659	genome.wustl.edu	37	14	90651138	90651138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022054.2	+1	reviewed	p.R340C	1.000	120	0%	45	31.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPS6KA5	9252	genome.wustl.edu	37	14	91356870	91356870	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004755.2	-1	validated	p.Y599	0.990	125	0%	102	29.4%	11	63.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CCDC88C	440193	genome.wustl.edu	37	14	91780357	91780357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080414.2	-1	validated	p.E601D	0.992	75	0%	54	24.1%	5	40%	benign(0.006)	tolerated(0.31)	neutral(0.027)	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91782002	91782002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080414.2	-1	validated	p.A553T	1.000	57	0%	28	14.3%	13	46.1%	possibly_damaging(0.521)	tolerated(0.28)	neutral(0.207)	NULL
CCDC88C	440193	genome.wustl.edu	37	14	91875074	91875074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080414.2	-1	validated	p.V67I	1.000	63	0%	29	34.5%	13	23%	probably_damaging(0.986)	tolerated(0.51)	neutral(0.444)	NULL
SMEK1	55671	genome.wustl.edu	37	14	91931709	91931709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032560.4	-1	validated	p.R559H	1.000	313	0.3%	224	26.3%	53	39.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SMEK1	55671	genome.wustl.edu	37	14	91937313	91937313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032560.4	-1	validated	p.A497T	1.000	194	0%	110	33.6%	85	42.3%	possibly_damaging(0.659)	deleterious(0.05)	deleterious(0.578)	superfamily_ARM-type_fold
TC2N	123036	genome.wustl.edu	37	14	92278758	92278758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128595.1	-1	validated	p.P67S	1.000	338	0%	285	29.5%	40	60%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FBLN5	10516	genome.wustl.edu	37	14	92349413	92349413	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006329.3	-1	reviewed	p.D249	0.961	211	0%	112	27.7%	31	0%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBLN5	10516	genome.wustl.edu	37	14	92403527	92403527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006329.3	-1	reviewed	p.T48I	1.000	91	0%	56	23.2%	18	0%	benign(0.002)	tolerated(0.37)	neutral(0.019)	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
TRIP11	9321	genome.wustl.edu	37	14	92441563	92441563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.R1804W	1.000	323	0%	208	22.6%	39	51.2%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
TRIP11	9321	genome.wustl.edu	37	14	92461859	92461859	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.S1631	0.997	190	0%	128	32.8%	25	44%	-	-	-	NULL
TRIP11	9321	genome.wustl.edu	37	14	92471539	92471539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004239.3	-1	reviewed	p.M927I	0.111	392	0%	266	27.8%	9	55.5%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92601793	92601795	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017437.1	+1	validated	p.E169in_frame_del	0.997:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Metallo-hydrolase/oxidoreductase
CPSF2	53981	genome.wustl.edu	37	14	92609415	92609415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017437.1	+1	validated	p.R306H	1.000	451	0%	249	29.3%	25	48%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	NULL
CPSF2	53981	genome.wustl.edu	37	14	92621571	92621571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017437.1	+1	validated	p.R449H	1.000	208	0%	127	24.4%	42	45.2%	possibly_damaging(0.568)	tolerated(0.14)	neutral(0.444)	NULL
BTBD7	55727	genome.wustl.edu	37	14	93720045	93720045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.A567D	1.000	557	0%	287	25.8%	5	20%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
UNC79	57578	genome.wustl.edu	37	14	94004423	94004423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.C227Y	1.000	69	0%	37	18.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
UNC79	57578	genome.wustl.edu	37	14	94039145	94039145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.A508T	1.000	537	0%	314	35.4%	0	-	benign(0.247)	deleterious(0.03)	neutral(0.390)	NULL
ASB2	51676	genome.wustl.edu	37	14	94423270	94423270	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016150.3	-1	reviewed	p.R3	1.000	47	0%	19	36.8%	0	-	-	-	-	NULL
LINC00521	256369	genome.wustl.edu	37	14	94465965	94465965	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024182.1	+1	validated	NULL	0.014	134	0%	72	29.2%	0	-	-	-	-	-
OTUB2	78990	genome.wustl.edu	37	14	94510379	94510379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023112.3	+1	validated	p.K94R	1.000	469	0%	205	31.2%	5	80%	benign(0.059)	deleterious(0)	neutral(0.449)	HMMPfam_Peptidase_C65,superfamily_Cysteine proteinases
DDX24	57062	genome.wustl.edu	37	14	94526629	94526629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.D576E	1.000	278	0%	190	29.5%	110	51.8%	benign(0.39)	deleterious(0)	deleterious(0.570)	superfamily_SSF52540
DDX24	57062	genome.wustl.edu	37	14	94528677	94528677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.A337S	0.985	405	0%	283	26.1%	72	43%	possibly_damaging(0.83)	tolerated(0.07)	deleterious(0.635)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
PPP4R4	57718	genome.wustl.edu	37	14	94696961	94696961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058237.1	+1	reviewed	p.T111M	0.999	212	0%	173	17.9%	0	-	possibly_damaging(0.92)	deleterious(0.05)	deleterious(0.716)	superfamily_ARM repeat
SERPINA2	390502	genome.wustl.edu	37	14	94832786	94832786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000238576	-1	known	p.V81M	0.038	37	0%	16	31.2%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA12	145264	genome.wustl.edu	37	14	94964270	94964270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173850.2	-1	provisional	p.K155N	0.035	411	0%	248	10.9%	0	-	benign(0.053)	deleterious(0)	neutral(0.448)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
SERPINA5	5104	genome.wustl.edu	37	14	95057127	95057127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000624.4	+1	validated	p.S311F	0.963	306	0%	184	15.2%	195	0.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
SERPINA3	12	genome.wustl.edu	37	14	95088735	95088735	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085.4	+1	reviewed	p.N325	0.000	159	0%	68	25%	56	7.1%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
DICER1	23405	genome.wustl.edu	37	14	95590777	95590777	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.I378F	0.989	197	0.5%	105	23.8%	5	40%	benign(0.03)	tolerated(0.74)	neutral(0.003)	superfamily_SSF52540
DICER1	23405	genome.wustl.edu	37	14	95595809	95595809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.R245K	1.000	300	0%	180	17.2%	7	0%	probably_damaging(0.987)	tolerated(0.32)	neutral(0.461)	HMMSmart_DEXDc,superfamily_SSF52540
DICER1	23405	genome.wustl.edu	37	14	95599668	95599668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.T43M	1.000	126	0%	77	20.8%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_DEXDc,superfamily_SSF52540
BDKRB1	623	genome.wustl.edu	37	14	96730747	96730747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000710.2	+1	reviewed	p.R243H	0.000	63	0%	25	32%	0	-	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ATG2B	55102	genome.wustl.edu	37	14	96752179	96752179	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.T2050	0.590	174	0%	93	24.7%	12	25%	-	-	-	HMMPfam_ATG_C
ATG2B	55102	genome.wustl.edu	37	14	96777592	96777592	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.S1341	0.997	440	0%	254	22.4%	4	25%	-	-	-	NULL
ATG2B	55102	genome.wustl.edu	37	14	96798976	96798976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.F408L	1.000	287	0%	160	10.6%	3	0%	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	NULL
AK7	122481	genome.wustl.edu	37	14	96916193	96916193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152327.2	+1	validated	p.A309T	1.000	98	0%	47	10.6%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PAPOLA	10914	genome.wustl.edu	37	14	97014145	97014145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032632.3	+1	validated	p.A471T	1.000	136	0%	101	26.7%	109	52.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain
VRK1	7443	genome.wustl.edu	37	14	97321598	97321598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003384.2	+1	reviewed	p.C205Y	1.000	183	0.5%	144	25.7%	21	52.3%	possibly_damaging(0.878)	deleterious(0)	deleterious(0.786)	superfamily_Kinase_like
EML1	2009	genome.wustl.edu	37	14	100377834	100377834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008707.1	+1	reviewed	p.G491D	1.000	240	0%	119	23.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
EML1	2009	genome.wustl.edu	37	14	100405613	100405613	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008707.1	+1	reviewed	p.G776	0.844	72	0%	44	22.7%	13	30.7%	-	-	-	superfamily_WD40_like
DLK1	8788	genome.wustl.edu	37	14	101198442	101198442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003836.5	+1	reviewed	p.G109V	0.982	79	0%	37	37.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
RTL1	388015	genome.wustl.edu	37	14	101349302	101349302	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.Y608	0.001	52	0%	29	44.8%	0	-	-	-	-	superfamily_DNA/RNA polymerases
MIR485	574436	genome.wustl.edu	37	14	101521810	101521810	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385292	+1	known	NULL	1.000	116	0%	42	40.5%	0	-	-	-	-	-
DIO3	1735	genome.wustl.edu	37	14	102028686	102028686	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001362.3	+1	reviewed	p.L259	1.000	35	0%	18	55.6%	1	0%	-	-	-	HMMPfam_T4_deiodinase
PPP2R5C	5527	genome.wustl.edu	37	14	102372806	102372806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002719.3	+1	reviewed	p.A364V	1.000	219	0%	121	34.7%	106	33.9%	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_B56,superfamily_ARM repeat
DYNC1H1	1778	genome.wustl.edu	37	14	102478372	102478372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.S2260I	1.000	146	0%	81	30.9%	49	55.1%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102507971	102507971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.L4001P	1.000	193	0%	82	28%	160	39.3%	benign(0.088)	deleterious(0.01)	neutral(0.412)	HMMPfam_Dynein_heavy
DYNC1H1	1778	genome.wustl.edu	37	14	102508999	102508999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R4143C	0.998	57	0%	24	25%	232	46.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Dynein_heavy
DYNC1H1	1778	genome.wustl.edu	37	14	102514345	102514345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R4400C	1.000	42	0%	26	38.5%	287	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
WDR20	91833	genome.wustl.edu	37	14	102675425	102675425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181291.1	+1	reviewed	p.W306C	1.000	108	1.9%	66	31.8%	20	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR20	91833	genome.wustl.edu	37	14	102675610	102675610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181291.1	+1	reviewed	p.R368Q	1.000	209	0%	113	16.8%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
ZNF839	55778	genome.wustl.edu	37	14	102807752	102807752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018335.3	+1	validated	p.A674T	0.000	78	0%	37	27%	31	38.7%	possibly_damaging(0.67)	deleterious(0)	deleterious(0.682)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102873695	102873695	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.T80	0.411	228	0.4%	144	22.2%	1	100%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
TECPR2	9895	genome.wustl.edu	37	14	102901436	102901436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.G761V	1.000	87	0%	36	27.8%	7	28.5%	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102916188	102916188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.A1100T	0.998	141	0%	69	27.5%	6	33.3%	possibly_damaging(0.741)	tolerated(0.21)	neutral(0.316)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102931491	102931491	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.L1218F	0.109	202	0%	97	26.8%	3	33.3%	probably_damaging(0.966)	tolerated(0.14)	deleterious(0.657)	HMMSmart_TECPR
MARK3	4140	genome.wustl.edu	37	14	103925068	103925068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335102	+1	known	p.C163Y	0.048	36	0%	20	20%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MARK3	4140	genome.wustl.edu	37	14	103941507	103941507	+	Missense_Mutation	SNP	C	C	T	rs183634888	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.A481V	0.999	146	0%	93	24.7%	89	40.4%	possibly_damaging(0.892)	tolerated(0.09)	deleterious(0.648)	NULL
MARK3	4140	genome.wustl.edu	37	14	103969323	103969323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.D674G	1.000	84	0%	39	30.8%	85	42.3%	benign(0.141)	deleterious(0.03)	neutral(0.377)	superfamily_Kinase associated domain 1 KA1
TDRD9	122402	genome.wustl.edu	37	14	104493223	104493223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153046.2	+1	validated	p.V1077I	0.921	206	0%	125	31.2%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
SIVA1	10572	genome.wustl.edu	37	14	105222956	105222956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006427.3	+1	reviewed	p.A110V	0.000	72	0%	32	40.6%	249	59.4%	probably_damaging(0.959)	tolerated(0.13)	deleterious(0.655)	HMMPfam_Siva
AHNAK2	113146	genome.wustl.edu	37	14	105405653	105405653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.D5379Y	0.012	63	0%	28	32.1%	5	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105414478	105414478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.V2437A	0.001	99	0%	44	22.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105418386	105418386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.E1134D	0.118	112	0%	58	13.8%	0	-	benign(0.045)	tolerated(0.27)	neutral(0.036)	NULL
C14orf79	122616	genome.wustl.edu	37	14	105453067	105453067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174891.3	+1	validated	p.L100P	0.000	59	0%	34	32.4%	12	58.3%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	NULL
BTBD6	90135	genome.wustl.edu	37	14	105716634	105716634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033271.2	+1	validated	p.Q286H	1.000	41	2.4%	22	31.8%	83	45.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PHR
IGHE	3497	genome.wustl.edu	37	14	106067911	106067911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390541	-1	known	p.T52N	0.000	111	0.9%	78	34.6%	0	-	possibly_damaging(0.624)	deleterious(0.04)	deleterious(0.567)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHG2	3501	genome.wustl.edu	37	14	106110122	106110122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390545	-1	known	p.A166T	0.007	982	0.1%	518	28.8%	68	0%	possibly_damaging(0.935)	tolerated(0.28)	neutral(0.412)	HMMPfam_C1-set,superfamily_SSF48726
IGHA1	3493	genome.wustl.edu	37	14	106174862	106174862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390547	-1	known	p.G47	0.000	18	0%	11	36.4%	349	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
IGHM	3507	genome.wustl.edu	37	14	106321786	106321786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000496208	-1	known	p.R149C	0.000	71	0%	26	15.4%	4220	0.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
IGHV1-3	28473	genome.wustl.edu	37	14	106471667	106471667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390595	-1	known	p.W5*	0.190	145	0%	73	15.1%	13	0%	-	-	-	NULL
IGHV3-13	28449	genome.wustl.edu	37	14	106586575	106586575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390602	-1	known	p.L5M	0.001	565	0%	369	11.4%	1	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
IGHV3-16	28447	genome.wustl.edu	37	14	106621909	106621909	+	Silent	SNP	C	C	T	rs182423176	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390604	-1	known	p.V112	0.998	1094	0%	706	13.6%	0	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
IGHV2-26	28455	genome.wustl.edu	37	14	106757861	106757861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390611	-1	known	p.S49N	0.002	256	0%	134	23.9%	2	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV3-30	28439	genome.wustl.edu	37	14	106791027	106791027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390613	-1	known	p.T110M	1.000	1374	0%	743	12.1%	33	0%	possibly_damaging(0.814)	deleterious(0.05)	deleterious(0.653)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGHV4-39	28394	genome.wustl.edu	37	14	106878065	106878065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390619	-1	known	p.M4I	0.000	156	0%	82	24.4%	23	0%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20457361	20457361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.E176D	1.000	84	0%	57	21.1%	0	-	-	-	-	HMMPfam_BRO1
LOC646096	646096	genome.wustl.edu	37	15	20488772	20488772	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040858.2	+1	model	NULL	1.000	471	0.2%	255	11.8%	0	-	-	-	-	-
ENSG00000229584	0	genome.wustl.edu	37	15	21369348	21369348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450252	+1	known	p.M1I	1.000	450	0.2%	268	18.7%	3	0%	-	-	-	NULL
OR4M2	390538	genome.wustl.edu	37	15	22368606	22368606	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004719.2	+1	validated	p.E11*	0.998	1205	0%	932	11.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR4M2	390538	genome.wustl.edu	37	15	22368825	22368825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004719.2	+1	validated	p.D84Y	0.957	1345	0.3%	948	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TUBGCP5	114791	genome.wustl.edu	37	15	22855088	22855088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.V517I	0.999	90	0%	52	11.5%	13	15.3%	benign(0.058)	tolerated(0.66)	neutral(0.006)	HMMPfam_Spc97_Spc98
TUBGCP5	114791	genome.wustl.edu	37	15	22866910	22866910	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.V809	1.000	84	0%	41	26.8%	3	0%	-	-	-	HMMPfam_Spc97_Spc98
CYFIP1	23191	genome.wustl.edu	37	15	22947062	22947062	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014608.2	+1	validated	p.S445	0.975	226	0%	132	23.5%	63	49.2%	-	-	-	HMMPfam_FragX_IP
CYFIP1	23191	genome.wustl.edu	37	15	22999494	22999494	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014608.2	+1	validated	p.D1122	0.975	102	0%	33	18.2%	94	22.3%	-	-	-	HMMPfam_FragX_IP
NIPA2	81614	genome.wustl.edu	37	15	23014445	23014445	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.L94	1.000	63	0%	50	14%	79	60.7%	-	-	-	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE
NIPA1	123606	genome.wustl.edu	37	15	23049034	23049034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144599.4	-1	reviewed	p.A262V	1.000	46	0%	31	35.5%	16	37.5%	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	HMMPfam_DUF803
ENSG00000140181	0	genome.wustl.edu	37	15	23300044	23300044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454333	-1	known	p.R78C	1.000	97	0%	42	26.2%	7	71.4%	-	-	-	NULL
LOC283685	283685	genome.wustl.edu	37	15	23685583	23685583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343322.1	-1	model	p.K610E	0.006	12	0%	10	40%	0	-	-	-	-	NULL
MKRN3	7681	genome.wustl.edu	37	15	23811080	23811080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005664.3	+1	reviewed	p.A51T	0.000	42	0%	24	25%	0	-	possibly_damaging(0.774)	tolerated(0.22)	neutral(0.330)	NULL
MKRN3	7681	genome.wustl.edu	37	15	23811248	23811248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005664.3	+1	reviewed	p.G107R	1.000	66	0%	28	28.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
MAGEL2	54551	genome.wustl.edu	37	15	23889537	23889537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019066.4	-1	reviewed	p.S515N	1.000	118	0%	34	23.5%	0	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_MAGE
C15orf2	23742	genome.wustl.edu	37	15	24921752	24921752	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.A246	0.000	126	0%	70	22.9%	0	-	-	-	-	NULL
ENSG00000206193	0	genome.wustl.edu	37	15	25327774	25327774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383025	+1	known	p.D36N	0.000	95	0%	49	24.5%	7	0%	-	-	-	NULL
UBE3A	7337	genome.wustl.edu	37	15	25616144	25616144	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000462.2	-1	reviewed	p.D396Y	1.000	171	0%	111	31.5%	39	35.8%	possibly_damaging(0.443)	deleterious(0.02)	deleterious(0.527)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25924553	25924553	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.R1479*	0.001	139	0%	67	35.8%	0	-	-	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	26026238	26026238	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.H194	1.000	62	0%	37	18.9%	1	0%	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
GABRG3	2567	genome.wustl.edu	37	15	27772615	27772615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033223.4	+1	validated	p.T301N	1.000	155	0.6%	82	11%	0	-	possibly_damaging(0.858)	tolerated(0.1)	deleterious(0.617)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
OCA2	4948	genome.wustl.edu	37	15	28202845	28202845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000275.2	-1	reviewed	p.A558D	0.954	41	0%	31	22.6%	0	-	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_CitMHS
HERC2	8924	genome.wustl.edu	37	15	28361966	28361966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.S4485F	1.000	48	0%	18	38.9%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC2	8924	genome.wustl.edu	37	15	28375324	28375324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.C4263R	1.000	254	0%	130	21.5%	16	56.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
HERC2	8924	genome.wustl.edu	37	15	28389267	28389267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.R3752H	1.000	163	0%	88	30.7%	13	38.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HERC2	8924	genome.wustl.edu	37	15	28389335	28389335	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.S3729	0.996	130	0.8%	93	28%	18	50%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28446668	28446668	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.T2550	0.215	355	0.3%	206	23.3%	5	0%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28459411	28459411	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.T2122	0.011	94	1.1%	34	26.5%	4	100%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28478848	28478848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.R1438H	1.000	312	0%	196	28.1%	6	16.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HERC2	8924	genome.wustl.edu	37	15	28491887	28491887	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	e21+1	1.000	253	0%	127	21.3%	1	100%	-	-	-	-
HERC2	8924	genome.wustl.edu	37	15	28525247	28525247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.S170N	0.866	192	0.5%	122	18%	1	0%	benign(0)	tolerated(0.68)	neutral(0.002)	NULL
ENSG00000206149	0	genome.wustl.edu	37	15	28901022	28901022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383034	+1	known	p.G91	0.926	90	0%	34	17.6%	4	50%	-	-	-	NULL
LOC653720	653720	genome.wustl.edu	37	15	28947677	28947677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001724258.2	-1	model	p.G501S	0.998	100	1%	53	15.1%	0	-	-	-	-	NULL
APBA2	321	genome.wustl.edu	37	15	29346863	29346863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005503.3	+1	reviewed	p.E259G	0.221	58	0%	33	36.4%	18	50%	benign(0)	tolerated(1)	-	NULL
TJP1	7082	genome.wustl.edu	37	15	30010693	30010693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.H1218R	0.078	108	0%	77	26%	81	48.1%	benign(0.086)	deleterious(0.04)	neutral(0.355)	NULL
TRPM1	4308	genome.wustl.edu	37	15	31352791	31352791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.D385Y	1.000	141	0%	61	24.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC283711	283711	genome.wustl.edu	37	15	31712372	31712372	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040656.2	+1	model	NULL	0.000	40	0%	35	25.7%	0	-	-	-	-	-
CHRNA7	1139	genome.wustl.edu	37	15	32450726	32450726	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000746.3	+1	reviewed	p.L238	1.000	232	0%	105	12.4%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
FMN1	342184	genome.wustl.edu	37	15	33300218	33300218	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103184.2	-1	validated	p.L517	0.988	42	0%	31	19.4%	6	66.6%	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33831620	33831620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.G168D	1.000	57	0%	35	20%	0	-	probably_damaging(1)	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
RYR3	6263	genome.wustl.edu	37	15	33873798	33873798	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.S509	0.774	459	0%	259	25.1%	0	-	-	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	33936603	33936603	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.C1216	0.135	51	2%	24	29.2%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34109092	34109092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.G3511V	1.000	59	0%	36	22.2%	0	-	benign(0.05)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34110783	34110783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.S3535Y	0.998	42	0%	39	10.3%	0	-	benign(0.107)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34117859	34117859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.V3710L	1.000	237	0%	131	23.7%	1	0%	possibly_damaging(0.649)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130299	34130299	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.K4040Q	1.000	278	0%	158	28.5%	0	-	benign(0.148)	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34137145	34137145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.A4460V	0.991	198	0%	89	20.2%	0	-	benign(0.062)	-	-	HMMPfam_RR_TM4-6
RYR3	6263	genome.wustl.edu	37	15	34147053	34147053	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.I4649	0.976	603	0%	289	27.7%	0	-	-	-	-	HMMPfam_Ion_trans
C15orf55	256646	genome.wustl.edu	37	15	34646035	34646035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.P318H	0.623	236	0%	126	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C15orf55	256646	genome.wustl.edu	37	15	34648680	34648680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.A796V	0.010	198	0%	116	31.9%	0	-	benign(0.009)	tolerated(0.69)	neutral(0.003)	NULL
ACTC1	70	genome.wustl.edu	37	15	35084711	35084711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005159.4	-1	reviewed	p.A172T	1.000	167	0%	102	19.6%	1	0%	benign(0.264)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTC1	70	genome.wustl.edu	37	15	35086974	35086974	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005159.4	-1	reviewed	p.C12	1.000	60	0%	21	23.8%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
AQR	9716	genome.wustl.edu	37	15	35149048	35149048	+	Missense_Mutation	SNP	G	G	T	rs61741130	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.P1468Q	0.000	126	0%	76	25%	74	40.5%	unknown(0)	tolerated(0.35)	-	NULL
AQR	9716	genome.wustl.edu	37	15	35174841	35174841	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	e27-1	1.000	247	0%	164	14.6%	0	-	-	-	-	-
ZNF770	54989	genome.wustl.edu	37	15	35274886	35274886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014106.2	-1	validated	p.K250N	0.388	102	0%	47	23.4%	19	42.1%	benign(0.008)	tolerated(0.3)	neutral(0.029)	NULL
MEIS2	4212	genome.wustl.edu	37	15	37390284	37390284	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170675.2	-1	reviewed	p.P43	1.000	20	0%	15	33.3%	11	45.4%	-	-	-	NULL
RASGRP1	10125	genome.wustl.edu	37	15	38786620	38786620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005739.3	-1	reviewed	p.R741H	0.222	82	0%	85	29.4%	2	0%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
RASGRP1	10125	genome.wustl.edu	37	15	38791088	38791088	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005739.3	-1	reviewed	p.R594*	1.000	434	0%	264	31.4%	1	0%	-	-	-	HMMPfam_C1_1,superfamily_Cysteine-rich domain
RASGRP1	10125	genome.wustl.edu	37	15	38852035	38852035	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005739.3	-1	reviewed	p.C69	1.000	87	0%	48	22.9%	0	-	-	-	-	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
C15orf53	400359	genome.wustl.edu	37	15	38990521	38990521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207444.2	+1	validated	p.W105C	0.001	264	0%	135	15.6%	0	-	benign(0.002)	-	-	NULL
THBS1	7057	genome.wustl.edu	37	15	39885703	39885703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003246.2	+1	reviewed	p.R1034H	1.000	392	0.3%	204	27%	63	11.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_TSP_C,superfamily_Concanavalin A-like lectins/glucanases
BMF	90427	genome.wustl.edu	37	15	40398072	40398072	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003940.1	-1	reviewed	p.T72	0.997	136	0%	58	31%	12	33.3%	-	-	-	NULL
PAK6	56924	genome.wustl.edu	37	15	40558136	40558136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128628.1	+1	reviewed	p.L100M	1.000	6	0.000	8	0.500	10	10%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PAK6	56924	genome.wustl.edu	37	15	40565649	40565649	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128628.1	+1	reviewed	p.S531	1.000	18	0%	19	31.6%	12	16.6%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLCB2	5330	genome.wustl.edu	37	15	40589026	40589026	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004573.2	-1	validated	p.G469	0.000	83	0%	38	13.2%	0	-	-	-	-	superfamily_PLC-like phosphodiesterases
C15orf52	388115	genome.wustl.edu	37	15	40632175	40632175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207380.2	-1	validated	p.K62N	0.999	55	0%	24	33.3%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
IVD	3712	genome.wustl.edu	37	15	40703814	40703814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002225.3	+1	reviewed	p.V204A	1.000	133	0%	60	28.3%	19	57.8%	benign(0.037)	deleterious(0.01)	neutral(0.408)	HMMPfam_Acyl-CoA_dh_M,superfamily_AcylCoA_dehyd_NM
CASC5	57082	genome.wustl.edu	37	15	40914766	40914766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.H794	0.915	146	0%	57	24.6%	4	25%	-	-	-	NULL
CASC5	57082	genome.wustl.edu	37	15	40916720	40916720	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.R1446	0.207	310	0%	202	28.2%	8	50%	-	-	-	NULL
CASC5	57082	genome.wustl.edu	37	15	40917792	40917792	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.I1803S	0.984	142	0%	87	23%	7	28.5%	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
CASC5	57082	genome.wustl.edu	37	15	40920330	40920330	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.N1839	0.850	231	0%	163	35.6%	8	25%	-	-	-	NULL
FAM82A2	55177	genome.wustl.edu	37	15	41037247	41037247	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018145.1	-1	provisional	p.A245	0.000	112	0%	50	30%	40	40%	-	-	-	NULL
DNAJC17	55192	genome.wustl.edu	37	15	41068739	41068739	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018163.2	-1	validated	e5+1	1.000	65	0%	37	43.2%	0	-	-	-	-	-
VPS18	57617	genome.wustl.edu	37	15	41195414	41195414	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020857.2	+1	reviewed	p.K933*	1.000	23	0%	15	40%	27	25.9%	-	-	-	NULL
INO80	54617	genome.wustl.edu	37	15	41347546	41347546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017553.1	-1	reviewed	p.H696R	1.000	177	0%	106	35.8%	21	42.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
EXD1	161829	genome.wustl.edu	37	15	41476587	41476587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152596.2	-1	provisional	p.D363Y	0.000	620	0%	380	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41817324	41817324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015540.2	-1	reviewed	p.S647N	1.000	70	0%	33	42.4%	27	33.3%	benign(0.218)	tolerated(0.35)	neutral(0.042)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41819136	41819136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015540.2	-1	reviewed	p.R626H	0.987	270	0%	154	28.6%	17	41.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MGA	23269	genome.wustl.edu	37	15	42046766	42046766	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	e17+1	0.996	49	0%	31	38.7%	0	-	-	-	-	-
MGA	23269	genome.wustl.edu	37	15	42058517	42058517	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.K2795T	0.986	119	0%	62	35.5%	6	66.6%	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42104263	42104263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128608.1	+1	validated	p.A146T	0.953	136	0%	57	31.6%	2	50%	benign(0.01)	tolerated(0.43)	neutral(0.014)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAPKBP1	23005	genome.wustl.edu	37	15	42113808	42113808	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128608.1	+1	validated	p.A921	0.016	332	0%	159	30.2%	2	0%	-	-	-	NULL
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42127061	42127061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005090.3	+1	validated	p.A63V	1.000	84	0%	50	46%	14	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Clavaminate synthase-like
PLA2G4D	283748	genome.wustl.edu	37	15	42364559	42364559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178034.3	-1	validated	p.A450V	0.218	175	0%	103	24.3%	0	-	benign(0.238)	tolerated(0.06)	neutral(0.347)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4D	283748	genome.wustl.edu	37	15	42377688	42377688	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178034.3	-1	validated	e5+1	0.984	188	0%	70	21.4%	0	-	-	-	-	-
PLA2G4F	255189	genome.wustl.edu	37	15	42434305	42434305	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213600.3	-1	validated	p.P809	0.000	168	0%	74	29.7%	1	0%	-	-	-	superfamily_FabD/lysophospholipase-like
GANC	2595	genome.wustl.edu	37	15	42631878	42631878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.G619R	1.000	388	0%	260	26.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases
GANC	2595	genome.wustl.edu	37	15	42643564	42643564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198141.2	+1	reviewed	p.V857M	1.000	273	0%	158	24.7%	4	0%	benign(0.058)	tolerated(0.1)	neutral(0.290)	NULL
CAPN3	825	genome.wustl.edu	37	15	42691702	42691702	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000070.2	+1	reviewed	p.E402	0.758	80	0%	64	26.6%	5	40%	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
TTBK2	146057	genome.wustl.edu	37	15	43067334	43067334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173500.3	-1	reviewed	p.A666V	1.000	546	0%	334	29.9%	0	-	possibly_damaging(0.521)	deleterious(0.02)	deleterious(0.558)	NULL
TTBK2	146057	genome.wustl.edu	37	15	43093269	43093269	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000263802	-1	known	p.G638	0.935	140	0%	71	18.3%	0	-	-	-	-	NULL
UBR1	197131	genome.wustl.edu	37	15	43250252	43250252	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174916.2	-1	reviewed	p.P1598	1.000	360	0%	234	26.1%	11	36.3%	-	-	-	NULL
CCNDBP1	23582	genome.wustl.edu	37	15	43483732	43483732	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012142.3	+1	reviewed	p.L240R	1.000	110	0%	69	24.6%	61	47.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TGM5	9333	genome.wustl.edu	37	15	43527978	43527978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201631.3	-1	reviewed	p.S468I	0.001	239	0%	95	28.4%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
TGM5	9333	genome.wustl.edu	37	15	43531158	43531158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201631.3	-1	reviewed	p.A401V	0.996	135	0%	63	30.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cysteine proteinases
LCMT2	9836	genome.wustl.edu	37	15	43620639	43620639	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014793.3	-1	reviewed	p.S683	0.022	152	0%	115	27.8%	17	94.1%	-	-	-	NULL
LCMT2	9836	genome.wustl.edu	37	15	43621484	43621484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014793.3	-1	reviewed	p.G402S	0.910	130	0%	72	22.2%	13	0%	probably_damaging(0.995)	tolerated(0.49)	neutral(0.468)	NULL
ADAL	161823	genome.wustl.edu	37	15	43641136	43641136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012969.2	+1	validated	p.L222P	0.990	242	0.4%	124	33.9%	6	83.3%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_A_deaminase,superfamily_SSF51556
ZSCAN29	146050	genome.wustl.edu	37	15	43653547	43653547	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152455.3	-1	validated	p.P761	0.999	390	0%	199	54.8%	15	100%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
TP53BP1	7158	genome.wustl.edu	37	15	43714112	43714112	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.S1347	0.983	236	0%	141	33.3%	21	14.2%	-	-	-	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43738609	43738609	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141980.1	-1	validated	p.E1006*	1.000	303	0.3%	135	31.9%	9	22.2%	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43814661	43814661	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.A330	0.001	69	0%	35	20%	0	-	-	-	-	NULL
MAP1A	4130	genome.wustl.edu	37	15	43820902	43820902	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002373.5	+1	reviewed	p.Q2411*	0.668	34	0%	19	31.6%	2	0%	-	-	-	NULL
STRC	161497	genome.wustl.edu	37	15	43906624	43906624	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153700.2	-1	reviewed	p.Q728	1.000	113	0%	64	23.4%	1	0%	-	-	-	NULL
CATSPER2	117155	genome.wustl.edu	37	15	43939566	43939566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172095.1	-1	reviewed	p.R82M	0.011	138	0%	75	29.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STRC	161497	genome.wustl.edu	37	15	43999847	43999847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381686	-1	known	p.S1197P	0.991	186	0%	82	24.4%	0	-	-	-	-	NULL
PDIA3	2923	genome.wustl.edu	37	15	44046059	44046059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005313.4	+1	reviewed	p.A69T	1.000	125	0%	71	31%	864	46.1%	benign(0.002)	tolerated(0.17)	neutral(0.059)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ELL3	80237	genome.wustl.edu	37	15	44068247	44068247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025165.2	-1	validated	p.R91C	0.057	85	0%	40	30%	14	7.1%	benign(0.007)	tolerated(0.19)	neutral(0.050)	HMMPfam_ELL
MFAP1	4236	genome.wustl.edu	37	15	44106874	44106874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005926.2	-1	validated	p.R148W	1.000	213	0%	103	27.2%	33	24.2%	unknown(0)	deleterious(0.04)	-	NULL
SPG11	80208	genome.wustl.edu	37	15	44861635	44861635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.K2182N	0.851	24	0%	17	23.5%	35	14.2%	probably_damaging(0.976)	tolerated(1)	neutral(0.418)	NULL
SPG11	80208	genome.wustl.edu	37	15	44890929	44890929	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025137.3	-1	reviewed	p.D1264	1.000	255	0%	147	27.9%	13	23%	-	-	-	NULL
DUOX1	53905	genome.wustl.edu	37	15	45443343	45443343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.R971C	0.081	302	0%	140	30%	6	16.6%	possibly_damaging(0.493)	tolerated(0.05)	deleterious(0.510)	NULL
DUOX1	53905	genome.wustl.edu	37	15	45454417	45454417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.L1364M	1.000	232	0%	97	35.1%	5	60%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
SLC28A2	9153	genome.wustl.edu	37	15	45554266	45554266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004212.3	+1	validated	p.S75I	0.000	287	0%	192	28.1%	0	-	benign(0.012)	tolerated(0.16)	neutral(0.060)	NULL
SPATA5L1	79029	genome.wustl.edu	37	15	45697580	45697580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024063.2	+1	validated	p.K384N	0.994	154	0%	79	30.4%	15	6.6%	benign(0.001)	tolerated(1)	-	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
HMGN2P46	283651	genome.wustl.edu	37	15	45847883	45847883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000313559	+1	known	p.G78E	0.969	354	0%	239	31%	0	-	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48056069	48056069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.R257H	1.000	628	0.2%	527	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48057216	48057216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.V464I	0.980	324	0%	214	32.2%	0	-	benign(0.343)	tolerated(0.35)	neutral(0.129)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA6D	80031	genome.wustl.edu	37	15	48062764	48062764	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.V668	1.000	444	0%	347	25.1%	1	100%	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48062914	48062914	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.N718	1.000	484	0%	314	30.9%	0	-	-	-	-	NULL
SLC24A5	283652	genome.wustl.edu	37	15	48434312	48434312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205850.2	+1	reviewed	p.A423T	1.000	514	0.2%	339	28.9%	32	40.6%	benign(0.021)	tolerated(0.24)	neutral(0.038)	HMMPfam_Na_Ca_ex
MYEF2	50804	genome.wustl.edu	37	15	48444099	48444099	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016132.3	-1	validated	p.G393	1.000	476	0%	416	30.8%	23	52.1%	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48797345	48797345	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	e15-1	1.000	239	0%	189	29.1%	0	-	-	-	-	-
CEP152	22995	genome.wustl.edu	37	15	49030644	49030644	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.T1589	0.000	761	0%	478	27.8%	4	50%	-	-	-	NULL
CEP152	22995	genome.wustl.edu	37	15	49031038	49031038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.P1458H	0.000	497	0%	311	12.5%	6	16.6%	benign(0.004)	deleterious(0.03)	neutral(0.364)	NULL
CEP152	22995	genome.wustl.edu	37	15	49034285	49034285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.R1227H	1.000	303	0%	165	29.7%	6	33.3%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
CEP152	22995	genome.wustl.edu	37	15	49037093	49037093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.R1188M	1.000	157	0%	110	29.1%	2	50%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
CEP152	22995	genome.wustl.edu	37	15	49073446	49073446	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.S508	0.095	328	0%	206	34.5%	0	-	-	-	-	NULL
CEP152	22995	genome.wustl.edu	37	15	49083446	49083446	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014985.2	-1	provisional	p.V320	0.975	225	0%	129	23.3%	1	0%	-	-	-	NULL
EID1	23741	genome.wustl.edu	37	15	49170673	49170673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014335.2	+1	validated	p.E100D	0.998	131	0.8%	43	32.6%	187	43.8%	possibly_damaging(0.942)	tolerated(0.49)	neutral(0.398)	NULL
GALK2	2585	genome.wustl.edu	37	15	49575904	49575904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002044.2	+1	reviewed	p.L249M	1.000	468	0.2%	295	32.5%	61	63.9%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	superfamily_SSF55060
ATP8B4	79895	genome.wustl.edu	37	15	50189645	50189645	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.S847	0.139	612	0.3%	421	28.3%	6	50%	-	-	-	superfamily_SSF56784,superfamily_SSF81665
HDC	3067	genome.wustl.edu	37	15	50534548	50534548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002112.2	-1	validated	p.L633P	0.982	276	0.4%	175	25.1%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
USP8	9101	genome.wustl.edu	37	15	50769531	50769531	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.T351	0.319	243	0%	167	28.7%	21	42.8%	-	-	-	NULL
AP4E1	23431	genome.wustl.edu	37	15	51290003	51290003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.V943I	1.000	293	0%	202	32.7%	1	0%	benign(0.002)	tolerated(0.18)	neutral(0.056)	HMMPfam_Coatamer_beta_C
DMXL2	23312	genome.wustl.edu	37	15	51747401	51747401	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.F2829V	1.000	141	0%	79	27.8%	9	33.3%	possibly_damaging(0.659)	tolerated(0.5)	neutral(0.243)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DMXL2	23312	genome.wustl.edu	37	15	51773810	51773810	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.K1831	0.995	202	0%	104	29.8%	7	28.5%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51791647	51791647	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.G1258	0.938	698	0%	513	27.1%	9	44.4%	-	-	-	HMMSmart_SM00320
DMXL2	23312	genome.wustl.edu	37	15	51791860	51791860	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.V1187	0.722	351	0%	173	28.3%	1	100%	-	-	-	NULL
DMXL2	23312	genome.wustl.edu	37	15	51828413	51828413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.A755V	1.000	684	0%	484	12.6%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320
TMOD2	29767	genome.wustl.edu	37	15	52100647	52100647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014548.3	+1	reviewed	p.R351M	0.878	175	0%	118	21.2%	2	0%	possibly_damaging(0.691)	deleterious(0.01)	deleterious(0.653)	NULL
TMOD3	29766	genome.wustl.edu	37	15	52186103	52186103	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014547.4	+1	validated	p.N196	1.000	345	0%	198	26.3%	57	49.1%	-	-	-	HMMPfam_Tropomodulin,superfamily_SSF52047
MYO5C	55930	genome.wustl.edu	37	15	52504055	52504055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018728.2	-1	validated	p.N1390D	1.000	204	0%	116	37.1%	18	50%	probably_damaging(0.995)	tolerated(0.57)	neutral(0.464)	NULL
MYO5C	55930	genome.wustl.edu	37	15	52515742	52515742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018728.2	-1	validated	p.M1209T	1.000	237	0%	142	16.9%	26	30.7%	benign(0.045)	tolerated(0.57)	neutral(0.009)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52672036	52672036	+	Silent	SNP	C	C	T	rs193027836	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000259.3	-1	reviewed	p.A694	0.445	220	0%	117	25.6%	2	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
WDR72	256764	genome.wustl.edu	37	15	53992017	53992017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.W565*	1.000	473	0%	253	28.9%	2	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WDR72	256764	genome.wustl.edu	37	15	54003598	54003598	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.I264	0.964	227	0%	126	28.6%	1	0%	-	-	-	superfamily_WD40 repeat-like
UNC13C	440279	genome.wustl.edu	37	15	54307578	54307578	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.G826	0.996	214	0%	169	27.8%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54307686	54307686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.E862D	1.000	302	0%	229	26.2%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
UNC13C	440279	genome.wustl.edu	37	15	54625995	54625995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.L1509M	1.000	117	0%	90	23.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCPG1	9236	genome.wustl.edu	37	15	55652011	55652011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004748.3	-1	validated	p.D654N	0.999	157	0%	107	28%	61	47.5%	benign(0.103)	tolerated(0.39)	neutral(0.024)	NULL
PRTG	283659	genome.wustl.edu	37	15	55912367	55912367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173814.4	-1	validated	p.T1099I	0.976	249	0%	190	13.7%	0	-	benign(0.167)	deleterious(0.02)	neutral(0.398)	NULL
NEDD4	4734	genome.wustl.edu	37	15	56132688	56132688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198400.2	-1	validated	p.M1010T	1.000	168	0%	112	22.3%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
RFX7	64864	genome.wustl.edu	37	15	56387601	56387601	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.G775	1.000	339	0.9%	235	28.9%	6	50%	-	-	-	NULL
RFX7	64864	genome.wustl.edu	37	15	56387724	56387724	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.S734	0.002	312	0%	232	33.6%	7	57.1%	-	-	-	NULL
RFX7	64864	genome.wustl.edu	37	15	56388251	56388251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.A559T	0.066	110	0.9%	70	18.6%	6	33.3%	benign(0)	tolerated(0.99)	-	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56923785	56923785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017661.2	-1	validated	p.S951P	0.583	296	0%	217	30%	9	33.3%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TCF12	6938	genome.wustl.edu	37	15	57565423	57565423	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207036.1	+1	reviewed	p.A647	0.989	353	0%	199	23.6%	64	54.6%	-	-	-	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
CGNL1	84952	genome.wustl.edu	37	15	57839562	57839562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032866.3	+1	validated	p.K1261N	0.933	215	0.5%	115	29.6%	10	40%	benign(0.004)	tolerated(0.29)	neutral(0.029)	NULL
HSP90AB4P	664618	genome.wustl.edu	37	15	58983326	58983326	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380522	-1	known	p.R498	1.000	202	0%	117	26.5%	0	-	-	-	-	HMMPfam_HSP90,superfamily_SSF110942
RNF111	54778	genome.wustl.edu	37	15	59359083	59359083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017610.6	+1	reviewed	p.A496V	0.463	557	0.2%	405	27.4%	23	39.1%	benign(0.001)	tolerated(0.45)	neutral(0.012)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59455405	59455405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004998.2	-1	validated	p.R860C	1.000	129	0%	69	31.9%	21	57.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Myosin_TH1
FAM81A	145773	genome.wustl.edu	37	15	59752243	59752243	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152450.2	+1	validated	p.T44	0.018	251	0%	156	30.1%	6	66.6%	-	-	-	NULL
BNIP2	663	genome.wustl.edu	37	15	59971908	59971908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004330.2	-1	reviewed	p.L181M	1.000	82	0%	55	14.5%	33	12.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ANXA2	302	genome.wustl.edu	37	15	60646357	60646357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002858.2	-1	reviewed	p.A213D	1.000	92	0%	52	11.5%	835	12%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,HMMPfam_Annexin
NARG2	79664	genome.wustl.edu	37	15	60748860	60748860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.A221V	0.225	124	0.8%	112	22.3%	12	75%	benign(0)	tolerated(0.77)	neutral(0.001)	NULL
RORA	6095	genome.wustl.edu	37	15	60803735	60803735	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134260.2	-1	reviewed	p.R203	0.058	181	0%	92	33.7%	5	0%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62208031	62208031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.T2749M	0.977	206	0%	153	11.1%	10	10%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_DUF1162
VPS13C	54832	genome.wustl.edu	37	15	62211501	62211501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020821.1	-1	validated	p.R2542H	0.996	246	0%	137	17.5%	7	28.5%	probably_damaging(1)	tolerated(0.37)	deleterious(0.519)	NULL
ENSG00000166104	0	genome.wustl.edu	37	15	62538784	62538784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429274	-1	known	p.S172N	0.000	33	0.000	9	0.444	0	-	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
TLN2	83660	genome.wustl.edu	37	15	62989989	62989989	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.T465	0.991	61	0%	32	31.2%	1	0%	-	-	-	NULL
TLN2	83660	genome.wustl.edu	37	15	63054013	63054013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.S1591N	1.000	644	0%	338	24.9%	12	66.6%	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	NULL
TLN2	83660	genome.wustl.edu	37	15	63089479	63089479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.A2038T	1.000	52	0%	31	41.9%	7	14.2%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_VBS
TLN2	83660	genome.wustl.edu	37	15	63092597	63092597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.A2089T	1.000	259	0.4%	160	30%	7	85.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLN2	83660	genome.wustl.edu	37	15	63132749	63132749	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015059.2	+1	reviewed	p.A2523	0.998	60	0%	29	17.2%	11	27.2%	-	-	-	HMMPfam_I_LWEQ,HMMSmart_ILWEQ
HERC1	8925	genome.wustl.edu	37	15	63916022	63916022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.L4505I	1.000	492	0.2%	297	32.7%	15	13.3%	probably_damaging(0.971)	-	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC1	8925	genome.wustl.edu	37	15	63942034	63942034	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.S3546Y	1.000	124	0%	63	25.4%	5	20%	benign(0.076)	-	-	superfamily_WD40 repeat-like
HERC1	8925	genome.wustl.edu	37	15	63967131	63967131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.R2419Q	1.000	358	0.3%	231	28.6%	3	33.3%	probably_damaging(0.989)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63970452	63970452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.R2221H	1.000	93	0%	52	23.1%	1	100%	probably_damaging(1)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63978601	63978601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.G2061V	1.000	405	0.2%	255	30.6%	1	0%	probably_damaging(1)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63986563	63986563	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.A1810S	1.000	215	0%	133	10.5%	1	0%	benign(0.181)	-	-	NULL
HERC1	8925	genome.wustl.edu	37	15	64048854	64048854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.D439Y	1.000	116	0%	81	16%	1	0%	probably_damaging(1)	-	-	superfamily_RCC1/BLIP-II
FAM96A	84191	genome.wustl.edu	37	15	64385922	64385922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032231.4	-1	validated	p.L16M	0.981	58	0%	33	12.1%	81	27.1%	possibly_damaging(0.685)	deleterious(0.01)	deleterious(0.650)	NULL
CSNK1G1	53944	genome.wustl.edu	37	15	64506260	64506260	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022048.3	-1	validated	p.F170V	1.000	417	0.5%	291	27.5%	7	100%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF609	23060	genome.wustl.edu	37	15	64792336	64792336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015042.1	+1	provisional	p.R240C	1.000	95	0%	53	26.4%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF609	23060	genome.wustl.edu	37	15	64970578	64970578	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015042.1	+1	provisional	p.Q1222	1.000	430	0%	233	10.7%	13	7.6%	-	-	-	NULL
CILP	8483	genome.wustl.edu	37	15	65489449	65489449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003613.3	-1	reviewed	p.S1059G	1.000	139	0%	76	23.7%	3	0%	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
CILP	8483	genome.wustl.edu	37	15	65489862	65489862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003613.3	-1	reviewed	p.R921Q	0.986	236	0%	126	34.9%	1	0%	benign(0.135)	tolerated(0.33)	neutral(0.036)	NULL
CILP	8483	genome.wustl.edu	37	15	65496854	65496854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003613.3	-1	reviewed	p.F224S	0.987	126	0%	49	22.4%	1	0%	possibly_damaging(0.452)	tolerated(0.06)	deleterious(0.471)	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65621264	65621264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.A810T	0.001	43	0%	13	46.2%	0	-	possibly_damaging(0.589)	-	-	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65622714	65622714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.V592A	1.000	199	0%	101	30.7%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DPP8	54878	genome.wustl.edu	37	15	65771297	65771297	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197960.2	-1	reviewed	p.G475	0.998	118	0%	76	28.9%	14	42.8%	-	-	-	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
DPP8	54878	genome.wustl.edu	37	15	65782551	65782551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197960.2	-1	reviewed	p.W284R	1.000	196	0%	118	11%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
PTPLAD1	51495	genome.wustl.edu	37	15	65855154	65855154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016395.2	+1	validated	p.L155R	0.973	141	0%	83	12%	87	21.8%	benign(0.248)	deleterious(0.03)	neutral(0.390)	NULL
SLC24A1	9187	genome.wustl.edu	37	15	65917427	65917427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004727.2	+1	validated	p.K337E	0.000	129	0%	64	29.7%	1	0%	unknown(0)	tolerated(0.79)	-	NULL
DENND4A	10260	genome.wustl.edu	37	15	65956719	65956719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.E1845*	1.000	95	0%	66	27.3%	6	0%	-	-	-	NULL
DIS3L	115752	genome.wustl.edu	37	15	66604162	66604162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.S137I	0.070	560	0.4%	360	29.7%	20	45%	benign(0.136)	deleterious(0.01)	neutral(0.417)	NULL
ENSG00000247991	0	genome.wustl.edu	37	15	66615956	66615956	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499718	-1	novel	NULL	0.000	177	0.6%	87	31%	0	-	-	-	-	-
DIS3L	115752	genome.wustl.edu	37	15	66621405	66621405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.S684P	1.000	165	0%	78	34.6%	38	55.2%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_RNB
ZWILCH	55055	genome.wustl.edu	37	15	66813454	66813454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017975.3	+1	validated	p.A220T	0.000	705	0%	407	11.8%	23	17.3%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_DUF2352
SMAD3	4088	genome.wustl.edu	37	15	67477161	67477161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005902.3	+1	reviewed	p.R323H	1.000	111	0%	53	26.4%	7	57.1%	benign(0.097)	tolerated(0.51)	neutral(0.017)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
AAGAB	79719	genome.wustl.edu	37	15	67528765	67528765	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024666.3	-1	validated	p.C114	0.964	439	0%	290	25.5%	62	46.7%	-	-	-	HMMPfam_Adaptin_binding
AAGAB	79719	genome.wustl.edu	37	15	67529077	67529077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024666.3	-1	validated	p.K52T	1.000	319	0.3%	199	30.7%	33	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_binding
IQCH	64799	genome.wustl.edu	37	15	67709275	67709275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031715.2	+1	validated	p.A702S	1.000	136	0.7%	80	25%	2	0%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
MAP2K5	5607	genome.wustl.edu	37	15	68065069	68065069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145160.1	+1	reviewed	p.R407	0.998	293	0%	255	17.3%	22	36.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PIAS1	8554	genome.wustl.edu	37	15	68378832	68378832	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016166.1	+1	reviewed	p.T71	0.518	378	0%	239	29.3%	20	25%	-	-	-	NULL
CALML4	91860	genome.wustl.edu	37	15	68489917	68489917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033429.2	-1	validated	p.M118I	0.630	219	0.5%	94	35.1%	30	46.6%	possibly_damaging(0.647)	deleterious(0)	deleterious(0.671)	HMMSmart_SM00054,superfamily_EF-hand
ITGA11	22801	genome.wustl.edu	37	15	68624346	68624346	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004439.1	-1	reviewed	p.R541*	1.000	75	0%	30	20%	6	0%	-	-	-	HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
UACA	55075	genome.wustl.edu	37	15	70963378	70963378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018003.2	-1	validated	p.Q407H	1.000	126	0.8%	95	28.4%	6	16.6%	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	NULL
UACA	55075	genome.wustl.edu	37	15	70983667	70983667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018003.2	-1	validated	p.H113Y	1.000	369	0%	277	29.6%	4	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LARP6	55323	genome.wustl.edu	37	15	71124693	71124693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018357.2	-1	validated	p.V392I	0.697	205	0%	80	28.7%	12	58.3%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
THSD4	79875	genome.wustl.edu	37	15	72039217	72039217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024817.2	+1	provisional	p.G693C	1.000	39	0%	16	43.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MYO9A	4649	genome.wustl.edu	37	15	72146758	72146758	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.S2102	0.999	555	0%	394	16.5%	2	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
MYO9A	4649	genome.wustl.edu	37	15	72152110	72152110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.C2040Y	1.000	208	0%	185	12.4%	4	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
NEO1	4756	genome.wustl.edu	37	15	73409142	73409142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002499.3	+1	validated	p.A131V	1.000	586	0%	446	30.9%	20	40%	probably_damaging(0.96)	tolerated(0.2)	neutral(0.452)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CLK3	1198	genome.wustl.edu	37	15	74912556	74912556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130028.1	+1	reviewed	p.S268N	1.000	72	0%	33	18.2%	39	15.3%	benign(0.301)	tolerated(0.06)	neutral(0.415)	NULL
EDC3	80153	genome.wustl.edu	37	15	74964022	74964022	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142443.1	-1	validated	p.P86	0.173	232	0%	153	32%	16	43.7%	-	-	-	NULL
CYP1A1	1543	genome.wustl.edu	37	15	75012938	75012938	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000499.3	-1	reviewed	p.R477	0.056	168	0%	88	11.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP1A1	1543	genome.wustl.edu	37	15	75015327	75015327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000499.3	-1	reviewed	p.K38E	0.995	79	0%	29	31%	0	-	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
CYP1A1	1543	genome.wustl.edu	37	15	75015387	75015387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000499.3	-1	reviewed	p.I18V	0.001	66	0%	34	14.7%	0	-	benign(0)	tolerated(1)	-	NULL
CYP1A2	1544	genome.wustl.edu	37	15	75047405	75047405	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000761.3	+1	reviewed	p.A509	0.000	93	0%	60	36.7%	0	-	-	-	-	superfamily_Cytochrome_P450
CYP1A2	1544	genome.wustl.edu	37	15	75047406	75047406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000761.3	+1	reviewed	p.R510W	0.000	93	0%	60	35%	0	-	benign(0.009)	tolerated(0.18)	neutral(0.057)	superfamily_Cytochrome_P450
SCAMP2	10066	genome.wustl.edu	37	15	75144525	75144525	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005697.3	-1	reviewed	p.A76	0.003	29	0%	19	31.6%	67	77.6%	-	-	-	NULL
MPI	4351	genome.wustl.edu	37	15	75188574	75188574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002435.1	+1	reviewed	p.C251Y	1.000	130	0%	59	20.3%	44	63.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins
SCAMP5	192683	genome.wustl.edu	37	15	75310237	75310237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138967.3	+1	validated	p.A107V	1.000	238	0%	120	20%	5	0%	unknown(0)	tolerated(1)	-	HMMPfam_SCAMP
C15orf39	56905	genome.wustl.edu	37	15	75503357	75503357	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015492.4	+1	validated	p.L1015H	1.000	25	0%	11	45.5%	33	30.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IMP3	55272	genome.wustl.edu	37	15	75931982	75931982	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018285.3	-1	reviewed	p.E176	1.000	50	2%	29	20.7%	113	12.3%	-	-	-	HMMSmart_SM00363,superfamily_Alpha-L RNA-binding motif
FBXO22	26263	genome.wustl.edu	37	15	76225324	76225324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147188.1	+1	reviewed	p.C365R	0.997	369	0%	218	30.3%	56	37.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_FIST_C
ETFA	2108	genome.wustl.edu	37	15	76578070	76578070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000126.3	-1	reviewed	p.T191I	0.985	414	0%	275	12.4%	196	17.8%	benign(0.002)	tolerated(0.11)	neutral(0.272)	superfamily_Adenine nucleotide alpha hydrolases-like
SCAPER	49855	genome.wustl.edu	37	15	77046262	77046262	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020843.2	-1	validated	p.E584*	1.000	728	0.1%	517	24.2%	4	25%	-	-	-	NULL
PSTPIP1	9051	genome.wustl.edu	37	15	77323567	77323567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003978.3	+1	reviewed	p.A230V	1.000	33	0%	24	25%	4	0%	benign(0.344)	tolerated(0.29)	neutral(0.138)	NULL
LINGO1	84894	genome.wustl.edu	37	15	77906539	77906539	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032808.5	-1	validated	p.G570	0.959	58	0%	30	26.7%	30	33.3%	-	-	-	NULL
IDH3A	3419	genome.wustl.edu	37	15	78458574	78458574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005530.2	+1	reviewed	p.R316H	0.999	247	0%	152	28.3%	91	43.9%	possibly_damaging(0.661)	tolerated(0.08)	deleterious(0.533)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
DNAJA4	55466	genome.wustl.edu	37	15	78566744	78566744	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018602.3	+1	validated	p.I237	0.862	53	0%	19	21.1%	32	18.7%	-	-	-	HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP40_DnaJ_pep
IREB2	3658	genome.wustl.edu	37	15	78777178	78777178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004136.2	+1	validated	p.Y497H	0.998	121	0%	73	19.2%	24	41.6%	probably_damaging(0.998)	tolerated(0.24)	deleterious(0.512)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
AGPHD1	123688	genome.wustl.edu	37	15	78805501	78805501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013619.2	+1	validated	p.A24V	0.014	214	0%	113	13.3%	2	50%	benign(0.286)	tolerated(0.23)	neutral(0.130)	superfamily_Protein kinase-like (PK-like)
PSMA4	5685	genome.wustl.edu	37	15	78837261	78837261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102667.1	+1	validated	p.A113V	1.000	142	0%	73	31.5%	263	43.3%	benign(0.24)	tolerated(0.1)	neutral(0.310)	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
CHRNA5	1138	genome.wustl.edu	37	15	78882779	78882779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000745.2	+1	provisional	p.A349V	1.000	418	0%	274	26.6%	13	38.4%	benign(0.006)	deleterious(0)	neutral(0.445)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
CHRNB4	1143	genome.wustl.edu	37	15	78921532	78921532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000750.3	-1	validated	p.A372D	0.002	72	0%	49	28.6%	0	-	benign(0.151)	tolerated(0.54)	neutral(0.021)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
MORF4L1	10933	genome.wustl.edu	37	15	79186549	79186549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206839.1	+1	validated	p.A299V	1.000	578	0%	383	26.9%	345	35.6%	benign(0.15)	deleterious(0)	neutral(0.458)	HMMPfam_MRG
CTSH	1512	genome.wustl.edu	37	15	79220055	79220055	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004390.3	-1	reviewed	p.I233	0.000	85	1.2%	40	30%	140	26.4%	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
RASGRF1	5923	genome.wustl.edu	37	15	79382756	79382756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002891.4	-1	reviewed	p.L29M	1.000	170	0%	69	29%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KIAA1024	23251	genome.wustl.edu	37	15	79749495	79749495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.A336S	1.000	435	0%	233	13.7%	0	-	probably_damaging(0.991)	tolerated(0.4)	neutral(0.460)	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79750075	79750075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.S529I	1.000	196	0%	97	33%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
FAH	2184	genome.wustl.edu	37	15	80454663	80454663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000137.1	+1	reviewed	p.A147V	0.997	336	0%	154	24%	15	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FAA_hydrolase,superfamily_FAH
LOC647020	647020	genome.wustl.edu	37	15	81410295	81410295	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719614.2	-1	model	p.T167	0.982	103	0%	67	29.9%	0	-	-	-	-	superfamily_L domain-like
IL16	3603	genome.wustl.edu	37	15	81565467	81565467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172217.3	+1	reviewed	p.I238V	1.000	99	0%	58	25.9%	0	-	possibly_damaging(0.942)	tolerated(0.67)	neutral(0.390)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
IL16	3603	genome.wustl.edu	37	15	81591916	81591916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172217.3	+1	reviewed	p.T750I	0.000	228	0%	116	25%	4	0%	benign(0.022)	tolerated(0.18)	neutral(0.057)	NULL
MEX3B	84206	genome.wustl.edu	37	15	82336905	82336905	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032246.3	-1	provisional	p.T102	0.998	45	0%	30	20%	8	62.5%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
FAM154B	283726	genome.wustl.edu	37	15	82574611	82574611	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008226.1	+1	predicted	p.S135	0.000	627	0%	398	26.6%	2	50%	-	-	-	NULL
CPEB1	64506	genome.wustl.edu	37	15	83215190	83215190	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030594.3	-1	reviewed	e11+1	1.000	204	0%	107	11.2%	0	-	-	-	-	-
CPEB1	64506	genome.wustl.edu	37	15	83222235	83222235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030594.3	-1	reviewed	p.P349S	1.000	186	0%	137	30.7%	0	-	benign(0.003)	tolerated(1)	-	NULL
FSD2	123722	genome.wustl.edu	37	15	83434023	83434023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007122.2	-1	provisional	p.T572N	1.000	121	0%	55	18.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FSD2	123722	genome.wustl.edu	37	15	83438586	83438586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007122.2	-1	provisional	p.P440S	1.000	231	0%	160	11.3%	0	-	probably_damaging(1)	tolerated(0.39)	deleterious(0.516)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
WHAMM	123720	genome.wustl.edu	37	15	83495211	83495211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080435.1	+1	provisional	p.S503N	0.661	322	0%	178	23%	9	44.4%	benign(0.003)	tolerated(0.38)	neutral(0.018)	NULL
WHAMM	123720	genome.wustl.edu	37	15	83502175	83502175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080435.1	+1	provisional	p.R773C	0.010	169	0%	89	20.2%	18	44.4%	benign(0)	tolerated(0.05)	neutral(0.345)	NULL
TM6SF1	53346	genome.wustl.edu	37	15	83805385	83805385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023003.3	+1	validated	p.E358D	1.000	339	0.3%	225	27.6%	2	0%	probably_damaging(0.973)	tolerated(0.69)	neutral(0.417)	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84287208	84287208	+	RNA	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026799.1	+1	validated	NULL	0.035	58	0%	32	40.6%	0	-	-	-	-	-
ADAMTSL3	57188	genome.wustl.edu	37	15	84527536	84527536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.A249D	1.000	193	0%	121	22.3%	0	-	probably_damaging(0.995)	tolerated(0.33)	deleterious(0.482)	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84611672	84611672	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.G776	0.026	168	0.6%	122	16.4%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ADAMTSL3	57188	genome.wustl.edu	37	15	84700100	84700100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.C1557Y	0.868	571	0.2%	335	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF592	9640	genome.wustl.edu	37	15	85327370	85327370	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014630.2	+1	validated	p.L488	0.006	75	0%	38	36.8%	14	50%	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85383964	85383964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.P687H	1.000	127	0%	54	31.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ALPK3	57538	genome.wustl.edu	37	15	85399979	85399979	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.Q872	0.001	201	0%	91	11%	0	-	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85403093	85403093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.E1553G	0.855	140	0%	57	14%	1	100%	benign(0.066)	deleterious(0.01)	neutral(0.410)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Protein kinase-like (PK-like),superfamily_Immunoglobulin
AKAP13	11214	genome.wustl.edu	37	15	86076983	86076983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.R117H	0.994	265	0%	178	25.8%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
AKAP13	11214	genome.wustl.edu	37	15	86124560	86124560	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.V1087	0.001	214	0%	114	37.7%	2	0%	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86212991	86212991	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.C1681	0.999	252	0%	166	26.5%	8	37.5%	-	-	-	NULL
AKAP13	11214	genome.wustl.edu	37	15	86278373	86278373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.A2482D	0.800	355	0%	219	28.8%	11	18.1%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
AGBL1	123624	genome.wustl.edu	37	15	86838640	86838640	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	e15+1	1.000	375	0%	314	29%	0	-	-	-	-	-
NTRK3	4916	genome.wustl.edu	37	15	88472461	88472461	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.F698	0.868	241	0.4%	137	26.3%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NTRK3	4916	genome.wustl.edu	37	15	88522618	88522618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007156.1	-1	reviewed	p.E599D	1.000	474	0%	287	26.5%	0	-	benign(0.105)	-	-	NULL
LOC100288732	100288732	genome.wustl.edu	37	15	88678322	88678322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343392.1	+1	model	p.A110V	0.001	114	0%	61	32.8%	0	-	-	-	-	NULL
DET1	55070	genome.wustl.edu	37	15	89060041	89060041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017996.3	-1	validated	p.P490S	1.000	129	0%	77	15.6%	16	18.7%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMPfam_Det1
AEN	64782	genome.wustl.edu	37	15	89173339	89173339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022767.3	+1	validated	p.E264D	1.000	56	0%	32	31.2%	27	51.8%	benign(0.015)	tolerated(0.36)	neutral(0.021)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
HAPLN3	145864	genome.wustl.edu	37	15	89422335	89422335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178232.2	-1	reviewed	p.A220V	0.995	21	0%	17	64.7%	15	20%	possibly_damaging(0.633)	deleterious(0.04)	deleterious(0.570)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
MFGE8	4240	genome.wustl.edu	37	15	89453045	89453045	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005928.2	-1	validated	p.Y61	0.006	98	0%	43	34.9%	43	46.5%	-	-	-	HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
POLG	5428	genome.wustl.edu	37	15	89871930	89871930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.R386C	1.000	176	0%	105	27.6%	18	22.2%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	NULL
POLG	5428	genome.wustl.edu	37	15	89872060	89872060	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.I342	0.857	77	0%	33	27.3%	15	40%	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90129072	90129072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.A437V	0.000	152	0%	110	20%	9	88.8%	benign(0.009)	tolerated(0.43)	neutral(0.014)	NULL
C15orf42	90381	genome.wustl.edu	37	15	90142601	90142601	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.Y649	1.000	176	0%	113	31%	2	0%	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90167073	90167073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.R1178*	0.000	536	0%	219	32.9%	4	50%	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90170255	90170255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.R1891C	1.000	230	0%	85	28.2%	11	72.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
WDR93	56964	genome.wustl.edu	37	15	90276355	90276355	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020212.1	+1	provisional	p.S483	0.004	236	0.4%	155	36.1%	1	100%	-	-	-	superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
ANPEP	290	genome.wustl.edu	37	15	90328720	90328720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.K922E	1.000	146	0.7%	77	28.6%	13	0%	possibly_damaging(0.465)	tolerated(0.09)	neutral(0.450)	NULL
C15orf38	348110	genome.wustl.edu	37	15	90451601	90451601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182616.2	-1	validated	p.R71H	1.000	55	0%	34	29.4%	17	41.1%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_UPF0552
ZNF710	374655	genome.wustl.edu	37	15	90611251	90611251	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198526.2	+1	validated	p.R294	1.000	41	0%	20	30%	7	57.1%	-	-	-	superfamily_SSF57667
ZNF710	374655	genome.wustl.edu	37	15	90616390	90616390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198526.2	+1	validated	p.V516I	1.000	65	0%	31	29%	21	38%	benign(0.23)	tolerated(0.19)	neutral(0.073)	superfamily_SSF57667
IDH2	3418	genome.wustl.edu	37	15	90631877	90631877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002168.2	-1	reviewed	p.R159H	1.000	76	0%	37	10.8%	223	13.4%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
IDH2	3418	genome.wustl.edu	37	15	90633836	90633836	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002168.2	-1	reviewed	p.D83V	1.000	49	0%	28	14.3%	186	30.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
LOC728477	728477	genome.wustl.edu	37	15	90838371	90838371	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343383.1	+1	model	p.P276	0.993	121	0%	62	19.4%	0	-	-	-	-	NULL
ZNF774	342132	genome.wustl.edu	37	15	90903430	90903430	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004309.2	+1	validated	p.T123P	0.000	267	0%	145	11%	2	0%	benign(0.001)	tolerated(0.34)	neutral(0.023)	NULL
IQGAP1	8826	genome.wustl.edu	37	15	90991920	90991920	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.S343	0.521	145	0%	108	32.4%	18	66.6%	-	-	-	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91009238	91009238	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.I594	0.988	310	0%	172	12.2%	20	10%	-	-	-	NULL
IQGAP1	8826	genome.wustl.edu	37	15	91025225	91025225	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.A1121	0.192	220	0%	126	33.3%	42	9.5%	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CRTC3	64784	genome.wustl.edu	37	15	91083299	91083299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022769.3	+1	validated	p.R54H	1.000	492	0%	302	11.9%	13	0%	possibly_damaging(0.943)	deleterious(0.04)	deleterious(0.736)	NULL
BLM	641	genome.wustl.edu	37	15	91352464	91352464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000057.2	+1	reviewed	p.Q1283H	1.000	247	0.4%	152	25.7%	13	69.2%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_HRDC,HMMSmart_HRDC
FES	2242	genome.wustl.edu	37	15	91428453	91428453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002005.3	+1	reviewed	p.S60R	0.795	30	0%	21	23.8%	3	0%	possibly_damaging(0.816)	tolerated(0.55)	neutral(0.316)	HMMPfam_FCH,HMMSmart_SM00055
FES	2242	genome.wustl.edu	37	15	91430264	91430264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002005.3	+1	reviewed	p.R154H	1.000	50	0%	19	31.6%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MAN2A2	4122	genome.wustl.edu	37	15	91455453	91455453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006122.2	+1	validated	p.A764T	1.000	54	0%	37	21.6%	34	44.1%	benign(0)	tolerated(0.62)	neutral(0.004)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
UNC45A	55898	genome.wustl.edu	37	15	91496415	91496415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018671.3	+1	validated	p.D818N	1.000	49	0%	15	46.7%	100	46%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PRC1	9055	genome.wustl.edu	37	15	91517908	91517908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003981.2	-1	reviewed	p.K419N	0.000	681	0.1%	328	21.6%	67	50.7%	benign(0.037)	tolerated(0.17)	neutral(0.061)	HMMPfam_MAP65_ASE1
PRC1	9055	genome.wustl.edu	37	15	91525198	91525198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003981.2	-1	reviewed	p.T94M	0.008	540	0%	315	13%	47	14.8%	benign(0.051)	tolerated(0.32)	neutral(0.027)	HMMPfam_MAP65_ASE1
VPS33B	26276	genome.wustl.edu	37	15	91543778	91543778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018668.3	-1	reviewed	p.D508G	1.000	103	0%	67	28.4%	23	56.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
VPS33B	26276	genome.wustl.edu	37	15	91549655	91549655	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018668.3	-1	reviewed	p.E267*	1.000	204	0%	103	17.5%	8	12.5%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SV2B	9899	genome.wustl.edu	37	15	91810874	91810874	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	e7+1	1.000	35	0%	23	43.5%	0	-	-	-	-	-
SV2B	9899	genome.wustl.edu	37	15	91835606	91835606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	p.A626S	1.000	225	0%	138	32.6%	0	-	possibly_damaging(0.523)	deleterious(0.03)	deleterious(0.541)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
SLCO3A1	28232	genome.wustl.edu	37	15	92706192	92706192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.R654C	1.000	293	0%	152	30.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_MFS general substrate transporter
ST8SIA2	8128	genome.wustl.edu	37	15	93007438	93007438	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006011.3	+1	reviewed	p.P317	1.000	268	0%	137	13.1%	0	-	-	-	-	HMMPfam_Glyco_transf_29
FAM174B	400451	genome.wustl.edu	37	15	93173517	93173517	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207446.2	-1	validated	p.R135*	1.000	92	0%	53	34%	76	50%	-	-	-	HMMPfam_DUF1180
CHD2	1106	genome.wustl.edu	37	15	93521488	93521488	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001271.3	+1	reviewed	p.R868	0.985	263	0%	193	11.9%	9	11.1%	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
NR2F2	7026	genome.wustl.edu	37	15	96877635	96877635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021005.3	+1	reviewed	p.A258V	1.000	63	0%	41	14.6%	63	9.5%	benign(0.105)	tolerated(0.16)	neutral(0.068)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ARRDC4	91947	genome.wustl.edu	37	15	98511279	98511279	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183376.2	+1	validated	p.G186	1.000	212	0%	114	28.9%	4	75%	-	-	-	superfamily_E set domains
IGF1R	3480	genome.wustl.edu	37	15	99250954	99250954	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.L86	1.000	247	0%	138	17.4%	3	0%	-	-	-	HMMPfam_Recep_L_domain,superfamily_SSF52058
IGF1R	3480	genome.wustl.edu	37	15	99486166	99486166	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000875.3	+1	reviewed	p.R1158*	0.959	130	0%	55	21.8%	8	12.5%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
SYNM	23336	genome.wustl.edu	37	15	99670296	99670296	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145728.2	+1	reviewed	p.C577Y	0.001	113	0%	61	24.6%	1	0%	-	-	-	NULL
MEF2A	4205	genome.wustl.edu	37	15	100211575	100211575	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130926.1	+1	reviewed	p.D102	1.000	388	0.3%	220	26.8%	8	50%	-	-	-	NULL
LYSMD4	145748	genome.wustl.edu	37	15	100271941	100271941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152449.2	-1	validated	p.R59H	0.053	32	0%	16	43.8%	0	-	unknown(0)	tolerated(0.12)	-	NULL
ALDH1A3	220	genome.wustl.edu	37	15	101434200	101434200	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000693.2	+1	reviewed	p.P193	0.000	122	0%	57	24.6%	3	0%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
LRRK1	79705	genome.wustl.edu	37	15	101528989	101528989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.R195H	0.113	108	0%	50	22%	3	0%	probably_damaging(0.976)	tolerated(0.11)	deleterious(0.690)	HMMSmart_SM00248,superfamily_Ankyrin repeat
LRRK1	79705	genome.wustl.edu	37	15	101605655	101605655	+	Silent	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.S1671	0.005	203	0%	60	15%	3	0%	-	-	-	NULL
CHSY1	22856	genome.wustl.edu	37	15	101775530	101775530	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000254190	-1	known	p.S191	0.998	169	0%	111	26.1%	15	40%	-	-	-	NULL
PCSK6	5046	genome.wustl.edu	37	15	101862769	101862769	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138320.1	-1	reviewed	p.R807C	0.012	36	0%	25	36%	19	63.1%	-	-	-	NULL
LOC100128108	100128108	genome.wustl.edu	37	15	102277476	102277476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001721901.2	-1	model	p.H77Y	0.734	27	0%	24	41.7%	0	-	-	-	-	NULL
ITFG3	83986	genome.wustl.edu	37	16	313761	313761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032039.2	+1	validated	p.G392V	0.526	56	0%	32	28.1%	105	32.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
IFT140	9742	genome.wustl.edu	37	16	1570178	1570178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.G1276E	1.000	54	0%	31	25.8%	16	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
CRAMP1L	57585	genome.wustl.edu	37	16	1719097	1719097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020825.3	+1	validated	p.A1144T	0.996	20	0.000	9	0.444	9	22.2%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
FAHD1	81889	genome.wustl.edu	37	16	1877499	1877499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018104.2	+1	validated	p.A90D	1.000	15	0.000	8	0.500	39	43.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
TSC2	7249	genome.wustl.edu	37	16	2129045	2129045	+	Silent	SNP	G	G	A	rs45517277	byCluster;byFrequency	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000548.3	+1	reviewed	p.T993	0.036	16	0%	12	33.3%	85	49.4%	-	-	-	NULL
MLST8	64223	genome.wustl.edu	37	16	2258336	2258336	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022372.3	+1	validated	e6+1	1.000	52	0%	18	44.4%	2	0%	-	-	-	-
C16orf79	283870	genome.wustl.edu	37	16	2259672	2259672	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182563.2	-1	provisional	p.H158	0.000	34	0%	18	22.2%	2	100%	-	-	-	NULL
PDPK1	5170	genome.wustl.edu	37	16	2627458	2627458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002613.3	+1	validated	p.Y248H	1.000	62	0%	47	14.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SRRM2	23524	genome.wustl.edu	37	16	2812546	2812546	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.T673P	0.900	560	0.4%	288	30.9%	81	35.8%	unknown(0)	-	-	NULL
MGC3771	81854	genome.wustl.edu	37	16	3165594	3165594	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024166.1	-1	validated	NULL	0.000	29	0%	15	53.3%	1	100%	-	-	-	-
ZNF213	7760	genome.wustl.edu	37	16	3189000	3189000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.P208S	0.998	165	0%	66	28.8%	17	29.4%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF213	7760	genome.wustl.edu	37	16	3191146	3191146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.R393H	1.000	59	0%	27	33.3%	22	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TIGD7	91151	genome.wustl.edu	37	16	3350172	3350172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033208.2	-1	validated	p.S148L	0.150	364	0%	207	30%	27	40.7%	possibly_damaging(0.484)	tolerated(0.13)	neutral(0.413)	NULL
SLX4	84464	genome.wustl.edu	37	16	3641150	3641150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.A830V	0.391	198	0%	81	32.1%	4	75%	possibly_damaging(0.916)	tolerated(0.37)	neutral(0.386)	NULL
SLX4	84464	genome.wustl.edu	37	16	3645687	3645687	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.D644	0.001	34	0%	11	54.5%	2	100%	-	-	-	NULL
SLX4	84464	genome.wustl.edu	37	16	3658582	3658582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.W128*	0.000	97	1%	59	11.9%	3	0%	-	-	-	NULL
TRAP1	10131	genome.wustl.edu	37	16	3736106	3736106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016292.2	-1	validated	p.S121I	1.000	150	0.7%	75	20%	132	22.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase
CREBBP	1387	genome.wustl.edu	37	16	3778767	3778767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.P2094L	1.000	96	0%	44	31.8%	60	46.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Nuc_recept_coact,HMMPfam_Creb_binding
CREBBP	1387	genome.wustl.edu	37	16	3781321	3781321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.R1682C	1.000	45	0%	18	22.2%	39	51.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CREBBP	1387	genome.wustl.edu	37	16	3801769	3801769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.G1246D	1.000	174	0%	107	25.2%	22	36.3%	unknown(0)	tolerated(0.08)	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3828768	3828768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.R625H	1.000	359	0%	220	25.5%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KIX,superfamily_KIX
DNAJA3	9093	genome.wustl.edu	37	16	4492377	4492377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005147.4	+1	validated	p.G247S	1.000	112	0%	61	26.2%	77	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich
SEPT12	124404	genome.wustl.edu	37	16	4835828	4835828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144605.3	-1	validated	p.D118E	1.000	62	0%	39	33.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPL	5493	genome.wustl.edu	37	16	4933446	4933446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.R1737H	0.967	184	0%	81	25.9%	2	0%	possibly_damaging(0.952)	tolerated(0.15)	deleterious(0.637)	superfamily_Plakin repeat
PPL	5493	genome.wustl.edu	37	16	4933730	4933730	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.S1642	0.048	156	0.6%	82	37.8%	3	66.6%	-	-	-	superfamily_Plakin repeat
PPL	5493	genome.wustl.edu	37	16	4934517	4934517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002705.4	-1	reviewed	p.R1380Q	0.997	222	0.5%	121	24.8%	4	0%	possibly_damaging(0.833)	tolerated(0.45)	neutral(0.330)	NULL
C16orf89	146556	genome.wustl.edu	37	16	5110303	5110303	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152459.3	-1	validated	p.Q203*	0.888	38	0%	11	36.4%	1	0%	-	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7568178	7568178	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.D39	1.000	516	0.2%	268	32.5%	0	-	-	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7629849	7629849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.S134F	1.000	198	0%	124	30.6%	0	-	possibly_damaging(0.524)	deleterious(0.04)	deleterious(0.525)	superfamily_SSF54928
PMM2	5373	genome.wustl.edu	37	16	8905009	8905009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000303.2	+1	reviewed	p.R141C	1.000	18	0%	17	41.2%	44	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMM,superfamily_HAD-like
USP7	7874	genome.wustl.edu	37	16	8996253	8996253	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003470.2	-1	validated	p.A642	0.016	81	0%	42	31%	91	30.7%	-	-	-	NULL
USP7	7874	genome.wustl.edu	37	16	9014216	9014216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003470.2	-1	validated	p.A204V	1.000	350	0%	168	19%	70	47.1%	benign(0.041)	tolerated(0.17)	neutral(0.061)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9857374	9857374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.L1343I	1.000	198	0%	113	21.2%	0	-	benign(0.011)	tolerated(0.57)	neutral(0.007)	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9862750	9862750	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.G851	0.991	273	0%	201	27.4%	0	-	-	-	-	HMMPfam_NMDAR2_C
GRIN2A	2903	genome.wustl.edu	37	16	9943779	9943779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.A388T	0.997	167	0%	110	21.8%	0	-	benign(0.013)	tolerated(0.49)	neutral(0.011)	superfamily_Periplasmic binding protein-like I
GRIN2A	2903	genome.wustl.edu	37	16	9984926	9984926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.D347Y	1.000	297	0.3%	197	28.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Periplasmic binding protein-like I
EMP2	2013	genome.wustl.edu	37	16	10641447	10641447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001424.4	-1	validated	p.A10T	0.000	101	0%	53	26.4%	66	51.5%	benign(0.013)	deleterious(0.02)	neutral(0.384)	HMMPfam_PMP22_Claudin
NUBP1	4682	genome.wustl.edu	37	16	10855621	10855621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002484.2	+1	validated	p.S242Y	0.999	52	0%	22	31.8%	27	37%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_ParA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CIITA	4261	genome.wustl.edu	37	16	11000988	11000988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000246.3	+1	reviewed	p.A547S	0.525	67	0%	28	35.7%	1	0%	benign(0.325)	tolerated(0.77)	neutral(0.103)	HMMPfam_NACHT
CIITA	4261	genome.wustl.edu	37	16	11001070	11001070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000246.3	+1	reviewed	p.A574V	0.625	80	0%	42	28.6%	4	0%	benign(0.004)	tolerated(0.3)	neutral(0.029)	HMMPfam_NACHT
CLEC16A	23274	genome.wustl.edu	37	16	11214502	11214502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015226.2	+1	validated	p.I716T	0.998	93	0%	66	33.3%	9	44.4%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11857465	11857465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014153.2	-1	provisional	p.R624H	1.000	242	0%	135	21.5%	31	48.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_CCCH zinc finger
ZC3H7A	29066	genome.wustl.edu	37	16	11876154	11876154	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014153.2	-1	provisional	p.L19	0.977	387	0%	247	15%	10	10%	-	-	-	NULL
ENSG00000234719	0	genome.wustl.edu	37	16	12024384	12024384	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399147	-1	known	p.E154	0.071	74	0%	45	31.1%	0	-	-	-	-	HMMPfam_NPIP
NOMO1	23420	genome.wustl.edu	37	16	14946363	14946363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.S220Y	1.000	390	0%	290	14.5%	48	22.9%	possibly_damaging(0.834)	deleterious(0.04)	deleterious(0.667)	superfamily_Carboxypeptidase regulatory domain
NTAN1	123803	genome.wustl.edu	37	16	15133886	15133886	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173474.2	-1	provisional	p.S193	0.993	326	0%	150	24%	58	48.2%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15709700	15709700	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.P1080	0.986	555	0.4%	325	27.1%	19	36.8%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15727699	15727699	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.G336	0.985	195	0.5%	124	10.5%	5	20%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15733003	15733003	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.K30*	1.000	296	0%	182	11%	5	0%	-	-	-	NULL
MYH11	4629	genome.wustl.edu	37	16	15814126	15814126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040114.1	-1	reviewed	p.R1619H	0.998	218	0%	93	26.9%	94	1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
NOMO3	408050	genome.wustl.edu	37	16	16330780	16330780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004067.2	+1	reviewed	p.G63V	1.000	1197	0%	690	16.2%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17202582	17202582	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022166.3	-1	reviewed	p.G950	0.638	17	0.000	8	0.500	0	-	-	-	-	NULL
XYLT1	64131	genome.wustl.edu	37	16	17292094	17292094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022166.3	-1	reviewed	p.L422M	1.000	101	0%	44	22.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Branch
ABCC6P1	653190	genome.wustl.edu	37	16	18593771	18593771	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003569.1	+1	provisional	NULL	0.968	106	0.9%	67	34.3%	0	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	-
SMG1	23049	genome.wustl.edu	37	16	18846388	18846388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.S2719I	0.997	711	0.1%	380	24.2%	16	25%	benign(0.186)	tolerated(0.07)	neutral(0.337)	NULL
SMG1	23049	genome.wustl.edu	37	16	18858849	18858849	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.H1974	0.970	479	0%	280	28.2%	9	55.5%	-	-	-	NULL
ITPRIPL2	162073	genome.wustl.edu	37	16	19127112	19127112	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034841.3	+1	validated	p.D443	1.000	35	0%	21	19%	18	44.4%	-	-	-	NULL
SYT17	51760	genome.wustl.edu	37	16	19278297	19278297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016524.2	+1	validated	p.R442C	1.000	55	0%	44	27.3%	11	27.2%	benign(0.155)	deleterious(0.05)	neutral(0.359)	HMMSmart_C2,superfamily_C2_CaLB
TMC5	79838	genome.wustl.edu	37	16	19451882	19451882	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105248.1	+1	validated	p.G174	0.001	648	0.2%	412	27.4%	8	62.5%	-	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19452108	19452108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105248.1	+1	validated	p.H250Y	0.000	243	0%	162	27.2%	7	71.4%	possibly_damaging(0.646)	deleterious(0.01)	deleterious(0.632)	NULL
TMC5	79838	genome.wustl.edu	37	16	19485577	19485577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105248.1	+1	validated	p.E690G	0.943	345	0%	178	25.8%	25	40%	possibly_damaging(0.439)	deleterious(0.01)	deleterious(0.548)	NULL
IQCK	124152	genome.wustl.edu	37	16	19745060	19745060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153208.1	+1	provisional	p.A96V	0.000	283	0.4%	175	13.1%	21	0%	benign(0.138)	tolerated(1)	neutral(0.011)	NULL
IQCK	124152	genome.wustl.edu	37	16	19838379	19838379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153208.1	+1	provisional	p.R241H	1.000	294	0.3%	185	25.4%	24	50%	unknown(0)	-	-	NULL
GP2	2813	genome.wustl.edu	37	16	20331584	20331584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007240.1	-1	validated	p.E289D	1.000	222	0%	115	27%	0	-	possibly_damaging(0.895)	tolerated(0.27)	neutral(0.386)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
GP2	2813	genome.wustl.edu	37	16	20335145	20335145	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007240.1	-1	validated	p.Y176	0.985	58	0%	32	18.8%	0	-	-	-	-	NULL
UMOD	7369	genome.wustl.edu	37	16	20346812	20346812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008389.1	-1	reviewed	p.S618N	0.852	186	0%	116	32.8%	0	-	unknown(0)	tolerated(0.08)	-	NULL
PDILT	204474	genome.wustl.edu	37	16	20380896	20380896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174924.1	-1	provisional	p.A345V	0.002	507	0.2%	282	13.5%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	superfamily_Thiordxn-like_fd
ACSM2A	123876	genome.wustl.edu	37	16	20487004	20487004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010845.2	+1	validated	p.T336N	0.002	642	0%	376	30.9%	0	-	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2A	123876	genome.wustl.edu	37	16	20492194	20492194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010845.2	+1	validated	p.A487D	0.856	225	0%	129	26.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM2A	123876	genome.wustl.edu	37	16	20497993	20497993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010845.2	+1	validated	p.A576V	0.000	709	0.1%	392	33.9%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
ACSM1	116285	genome.wustl.edu	37	16	20696603	20696603	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052956.2	-1	validated	p.T105	0.795	376	0%	231	28.1%	16	62.5%	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20796428	20796428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.T381M	1.000	320	0%	200	28.5%	19	26.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
LOC81691	81691	genome.wustl.edu	37	16	20833151	20833151	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.G181	0.823	266	0%	140	28.6%	1	0%	-	-	-	NULL
LOC81691	81691	genome.wustl.edu	37	16	20856128	20856128	+	Missense_Mutation	SNP	G	G	T	rs181905689	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.D633Y	1.000	218	0%	158	30.4%	4	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LOC81691	81691	genome.wustl.edu	37	16	20857573	20857573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.A719T	0.996	489	0%	330	25.5%	5	20%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
DCUN1D3	123879	genome.wustl.edu	37	16	20873479	20873479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173475.2	-1	validated	p.L128M	1.000	310	0%	206	26.7%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCUN1D3	123879	genome.wustl.edu	37	16	20873704	20873704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173475.2	-1	validated	p.V53I	0.588	342	0.6%	169	13.6%	8	12.5%	benign(0.009)	tolerated(0.24)	neutral(0.038)	NULL
DNAH3	55567	genome.wustl.edu	37	16	20955880	20955880	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.L3817	1.000	261	0.8%	175	28%	0	-	-	-	-	HMMPfam_Dynein_heavy
DNAH3	55567	genome.wustl.edu	37	16	20975431	20975431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.A3259T	1.000	1036	0%	641	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21061311	21061311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.L1423I	1.000	334	0%	180	37.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH3	55567	genome.wustl.edu	37	16	21080737	21080737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.A1127V	0.993	303	0%	219	27.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_DHC_N2
DNAH3	55567	genome.wustl.edu	37	16	21123104	21123104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.R648W	0.965	157	0.6%	84	23.8%	0	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21147646	21147646	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.I295	0.993	447	0%	250	28%	0	-	-	-	-	NULL
DNAH3	55567	genome.wustl.edu	37	16	21152011	21152011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.T181M	0.000	249	0%	117	33.3%	1	100%	benign(0.011)	tolerated(0.24)	neutral(0.038)	NULL
ZP2	7783	genome.wustl.edu	37	16	21208817	21208817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003460.1	-1	reviewed	p.T741N	0.009	143	0%	78	30.8%	0	-	possibly_damaging(0.808)	deleterious(0.01)	deleterious(0.710)	NULL
ANKS4B	257629	genome.wustl.edu	37	16	21261574	21261574	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145865.2	+1	validated	p.N229	0.940	320	0%	177	11.9%	1	0%	-	-	-	NULL
IGSF6	10261	genome.wustl.edu	37	16	21655706	21655706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005849.2	-1	validated	p.L147F	0.613	143	0%	99	13.1%	12	0%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ENSG00000248124	0	genome.wustl.edu	37	16	21822014	21822014	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514813	-1	novel	NULL	0.051	29	0%	25	16%	3	0%	-	-	-	-
UQCRC2	7385	genome.wustl.edu	37	16	21991977	21991977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003366.2	+1	validated	p.V412I	0.986	403	0.2%	271	25.1%	203	40.3%	benign(0.007)	tolerated(0.21)	neutral(0.044)	superfamily_LuxS/MPP-like metallohydrolase
VWA3A	146177	genome.wustl.edu	37	16	22167205	22167205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173615.3	+1	validated	p.K1180fs	0.000	-	-	-	-	-	-	-	-	-	NULL
EEF2K	29904	genome.wustl.edu	37	16	22291669	22291669	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.Y680	0.019	56	0%	26	30.8%	26	34.6%	-	-	-	HMMPfam_Sel1,superfamily_SSF81901
CDR2	1039	genome.wustl.edu	37	16	22360662	22360662	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001802.1	-1	validated	p.K148	0.000	468	0%	258	32.6%	34	32.3%	-	-	-	NULL
USP31	57478	genome.wustl.edu	37	16	23119485	23119485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020718.3	-1	validated	p.A218V	1.000	202	0%	118	22%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_UCH,superfamily_Cysteine proteinases
COG7	91949	genome.wustl.edu	37	16	23415063	23415063	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153603.3	-1	reviewed	p.S585	0.001	93	0%	41	22%	43	39.5%	-	-	-	HMMPfam_COG7
COG7	91949	genome.wustl.edu	37	16	23430069	23430069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153603.3	-1	reviewed	p.G363	0.192	116	0%	63	36.5%	32	56.2%	-	-	-	HMMPfam_COG7
GGA2	23062	genome.wustl.edu	37	16	23490205	23490205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015044.4	-1	reviewed	p.M386T	0.295	146	0%	91	24.2%	58	43.1%	unknown(0)	-	-	NULL
EARS2	124454	genome.wustl.edu	37	16	23535678	23535678	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003501.1	-1	validated	NULL	0.000	185	0%	136	32.4%	25	36%	-	-	-	-
PALB2	79728	genome.wustl.edu	37	16	23641267	23641267	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024675.3	-1	reviewed	p.A736	0.021	278	0%	113	26.5%	19	42.1%	-	-	-	NULL
PLK1	5347	genome.wustl.edu	37	16	23693411	23693411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005030.3	+1	provisional	p.P250H	1.000	360	0.3%	193	28%	56	53.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PRKCB	5579	genome.wustl.edu	37	16	24135157	24135157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002738.6	+1	reviewed	p.R307M	1.000	381	0.3%	222	30.6%	0	-	benign(0.008)	tolerated(0.05)	neutral(0.345)	NULL
PRKCB	5579	genome.wustl.edu	37	16	24166150	24166150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002738.6	+1	reviewed	p.T404I	1.000	67	0%	42	14.3%	3	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNG3	10368	genome.wustl.edu	37	16	24358116	24358116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006539.2	+1	reviewed	p.Q91H	0.947	151	0%	68	36.8%	0	-	possibly_damaging(0.805)	tolerated(0.24)	neutral(0.340)	HMMPfam_PMP22_Claudin
CACNG3	10368	genome.wustl.edu	37	16	24372855	24372855	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006539.2	+1	reviewed	p.L207V	0.945	431	0%	215	24.7%	0	-	benign(0.022)	tolerated(0.4)	neutral(0.017)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24560282	24560282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.A95S	1.000	67	0%	44	31.8%	15	13.3%	benign(0.004)	tolerated(0.85)	neutral(0.001)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24567141	24567141	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	e6-1	1.000	282	0%	153	28.1%	0	-	-	-	-	-
RBBP6	5930	genome.wustl.edu	37	16	24573144	24573144	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	e10-1	1.000	292	0%	188	35.6%	2	50%	-	-	-	-
TNRC6A	27327	genome.wustl.edu	37	16	24834277	24834277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.A1819V	1.000	373	0%	191	23.6%	25	44%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_RNA-binding domain RBD
AQP8	343	genome.wustl.edu	37	16	25228522	25228522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001169.2	+1	reviewed	p.A6T	0.000	97	0%	63	17.5%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
HS3ST4	9951	genome.wustl.edu	37	16	26147303	26147303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331351	+1	known	p.A369T	1.000	435	0.2%	264	12.9%	0	-	possibly_damaging(0.808)	tolerated(0.54)	neutral(0.311)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
C16orf82	162083	genome.wustl.edu	37	16	27078216	27078216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505035	+1	known	p.T30I	1.000	229	0%	113	26.5%	0	-	-	-	-	NULL
NSMCE1	197370	genome.wustl.edu	37	16	27268865	27268865	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145080.3	-1	validated	p.G9	0.007	168	0%	98	24.5%	77	36.3%	-	-	-	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27506679	27506679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.R829W	0.004	60	0%	39	15.4%	11	36.3%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
GTF3C1	2975	genome.wustl.edu	37	16	27519889	27519889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.R405Q	1.000	117	0%	75	25.3%	12	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27761018	27761018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.R913C	0.987	466	0%	193	28.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27761457	27761457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.S1059Y	0.446	292	0%	148	12.8%	11	9%	benign(0)	tolerated(1)	-	superfamily_Galactose-binding domain-like
KIAA0556	23247	genome.wustl.edu	37	16	27781245	27781245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.R1347W	1.000	225	0%	103	27.2%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose-binding domain-like
CCDC101	112869	genome.wustl.edu	37	16	28602125	28602125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138414.2	+1	validated	p.P212T	1.000	86	0%	37	13.5%	27	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1325
SH2B1	25970	genome.wustl.edu	37	16	28878069	28878069	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015503.2	+1	reviewed	p.T218	0.002	55	0%	30	40%	14	42.8%	-	-	-	NULL
SH2B1	25970	genome.wustl.edu	37	16	28883854	28883854	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015503.2	+1	reviewed	e7-1	1.000	120	0%	62	32.3%	0	-	-	-	-	-
ATP2A1	487	genome.wustl.edu	37	16	28914724	28914724	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173201.2	+1	reviewed	p.D981	0.860	93	0%	49	20.4%	2	0%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
RABEP2	79874	genome.wustl.edu	37	16	28922305	28922305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024816.2	-1	validated	p.M331I	1.000	32	0%	23	21.7%	24	50%	benign(0.132)	tolerated(0.83)	neutral(0.011)	NULL
SPNS1	83985	genome.wustl.edu	37	16	28993318	28993318	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142448.1	+1	validated	p.R302	0.732	95	0%	37	40.5%	87	37.9%	-	-	-	superfamily_MFS general substrate transporter
LOC100289169	100289169	genome.wustl.edu	37	16	29063565	29063565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343436.1	+1	model	p.T56I	0.003	446	0%	295	18%	0	-	possibly_damaging(0.604)	tolerated(0.21)	neutral(0.254)	HMMPfam_NPIP
RRN3P2	653390	genome.wustl.edu	37	16	29108628	29108628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427965	+1	known	p.L361M	1.000	664	0%	460	13.9%	8	0%	benign(0.116)	tolerated(0.19)	neutral(0.059)	HMMPfam_RRN3
LOC728888	728888	genome.wustl.edu	37	16	29394441	29394441	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343430.1	-1	model	p.S604	0.002	263	0.4%	158	25.9%	2	0%	-	-	-	NULL
LOC728888	728888	genome.wustl.edu	37	16	29394574	29394574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343430.1	-1	model	p.P560H	0.000	479	0%	250	11.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_NPIP
LOC728888	728888	genome.wustl.edu	37	16	29395548	29395548	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343430.1	-1	model	p.T235	0.004	742	0%	392	17.3%	1	0%	-	-	-	HMMPfam_NPIP
SPN	6693	genome.wustl.edu	37	16	29675529	29675529	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030288.1	+1	validated	p.T160	0.041	245	0.4%	128	13.3%	4	0%	-	-	-	NULL
KIF22	3835	genome.wustl.edu	37	16	29814217	29814217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007317.1	+1	reviewed	p.V470M	0.996	116	0%	40	12.5%	55	25.4%	possibly_damaging(0.848)	tolerated(0.11)	deleterious(0.597)	NULL
KIF22	3835	genome.wustl.edu	37	16	29815374	29815374	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007317.1	+1	reviewed	p.G555	0.980	157	0%	68	29.4%	65	50.7%	-	-	-	NULL
TAOK2	9344	genome.wustl.edu	37	16	29990619	29990619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016151.2	+1	validated	p.T185A	1.000	310	0%	145	25.5%	43	44.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TBX6	6911	genome.wustl.edu	37	16	30099890	30099890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004608.3	-1	reviewed	p.R272Q	1.000	123	0%	56	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
TBC1D10B	26000	genome.wustl.edu	37	16	30376851	30376851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015527.3	-1	validated	p.N341D	0.999	83	0%	37	18.9%	35	42.8%	benign(0.009)	tolerated(0.17)	neutral(0.059)	superfamily_Ypt/Rab-GAP domain of gyp1p
MYLPF	29895	genome.wustl.edu	37	16	30387497	30387497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013292.3	+1	provisional	p.G43V	1.000	45	0%	30	26.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
ZNF48	197407	genome.wustl.edu	37	16	30409636	30409636	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495929	+1	known	p.R485*	0.015	62	0%	30	36.7%	17	52.9%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
SEPHS2	22928	genome.wustl.edu	37	16	30456076	30456076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418751	-1	known	p.H207Y	1.000	215	0%	97	30.9%	151	45.6%	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_AIRS_C,superfamily_AIR_synth_C
ITGAL	3683	genome.wustl.edu	37	16	30515584	30515584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002209.2	+1	reviewed	p.A745V	0.000	132	0%	79	34.2%	5	0%	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
FBRS	64319	genome.wustl.edu	37	16	30680827	30680827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105079.1	+1	validated	p.P415H	0.351	110	0%	42	23.8%	59	57.6%	unknown(0)	deleterious(0)	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30734432	30734432	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.T1347	0.116	665	0.2%	315	26%	30	43.3%	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30744624	30744624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.L2051M	1.000	175	0%	125	30.4%	49	42.8%	unknown(0)	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SRCAP	10847	genome.wustl.edu	37	16	30748679	30748679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.A2440S	0.002	61	0%	45	13.3%	79	8.8%	unknown(0)	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30777583	30777583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.R365W	0.996	39	0%	30	40%	47	46.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RNF40	9810	genome.wustl.edu	37	16	30779996	30779996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.A679V	0.998	65	0%	38	10.5%	69	8.6%	benign(0.012)	tolerated(0.82)	neutral(0.001)	NULL
RNF40	9810	genome.wustl.edu	37	16	30780224	30780224	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014771.2	+1	reviewed	p.I721	0.998	56	0%	41	34.1%	53	33.9%	-	-	-	NULL
BCL7C	9274	genome.wustl.edu	37	16	30904015	30904015	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004765.2	-1	reviewed	p.E112*	0.998	110	0%	45	28.9%	57	17.5%	-	-	-	NULL
ORAI3	93129	genome.wustl.edu	37	16	30964968	30964968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152288.2	+1	validated	p.A231S	0.000	151	0%	67	32.8%	9	22.2%	benign(0.001)	tolerated(0.58)	neutral(0.005)	HMMPfam_DUF1650
SETD1A	9739	genome.wustl.edu	37	16	30976484	30976484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.E474G	1.000	52	0%	32	18.8%	16	50%	possibly_damaging(0.936)	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30977164	30977164	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.P654	1.000	39	0%	23	47.8%	7	57.1%	-	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30990868	30990868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.A1254V	0.926	22	0%	12	50%	19	73.6%	unknown(0)	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30992154	30992154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.K1559R	1.000	43	0%	16	50%	21	9.5%	unknown(0)	-	-	superfamily_SSF82199
STX4	6810	genome.wustl.edu	37	16	31049311	31049311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004604.3	+1	provisional	p.Y148C	1.000	167	0%	89	33.7%	52	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SynN,superfamily_t-snare
VKORC1	79001	genome.wustl.edu	37	16	31102480	31102480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024006.4	-1	reviewed	p.P156H	0.001	53	0%	38	26.3%	307	35.5%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
BCKDK	10295	genome.wustl.edu	37	16	31121591	31121591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005881.2	+1	validated	p.K163N	1.000	38	0%	15	60%	60	50%	possibly_damaging(0.442)	tolerated(0.25)	neutral(0.181)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
PRSS8	5652	genome.wustl.edu	37	16	31143758	31143758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002773.3	-1	reviewed	p.A233T	1.000	186	0%	89	33.7%	338	44.9%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER
ITGAM	3684	genome.wustl.edu	37	16	31288029	31288029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000632.3	+1	reviewed	p.E349D	1.000	53	0%	36	11.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31289410	31289410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000632.3	+1	reviewed	p.A446T	0.000	57	0%	29	34.5%	0	-	benign(0.043)	tolerated(1)	neutral(0.003)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGAM	3684	genome.wustl.edu	37	16	31341891	31341891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000632.3	+1	reviewed	p.L1081M	0.000	139	0%	68	33.8%	3	0%	possibly_damaging(0.64)	tolerated(0.19)	neutral(0.274)	NULL
ITGAX	3687	genome.wustl.edu	37	16	31368406	31368406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.S101I	0.000	17	0%	15	40%	5	0%	benign(0.046)	tolerated(0.12)	neutral(0.263)	superfamily_SSF69318
ITGAX	3687	genome.wustl.edu	37	16	31374046	31374046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.R444K	0.017	41	0%	29	27.6%	3	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMSmart_Int_alpha,superfamily_SSF69318
ITGAD	3681	genome.wustl.edu	37	16	31429822	31429822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005353.2	+1	validated	p.S906N	0.007	67	0%	34	44.1%	0	-	benign(0.006)	tolerated(0.42)	neutral(0.014)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
SLC5A2	6524	genome.wustl.edu	37	16	31496206	31496206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003041.3	+1	reviewed	p.A89T	1.000	47	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SSF
SLC5A2	6524	genome.wustl.edu	37	16	31497550	31497550	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003041.3	+1	reviewed	p.A176	0.999	93	0%	42	11.9%	0	-	-	-	-	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1
ZNF267	10308	genome.wustl.edu	37	16	31926107	31926107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003414.4	+1	validated	p.E179D	0.941	233	0.4%	158	15.8%	1	0%	benign(0.008)	deleterious(0.05)	neutral(0.345)	NULL
ENSG00000197476	0	genome.wustl.edu	37	16	31985203	31985203	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356559	+1	known	e3+1	0.769	227	0%	151	18.5%	0	-	-	-	-	-
IGHV2OR16-5	100129631	genome.wustl.edu	37	16	32859364	32859364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398679	+1	known	p.T82M	0.000	113	0%	40	20%	0	-	possibly_damaging(0.87)	deleterious(0.01)	deleterious(0.744)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
SHCBP1	79801	genome.wustl.edu	37	16	46638372	46638372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.H231Y	1.000	343	0%	197	30.5%	8	0%	benign(0.001)	tolerated(1)	-	NULL
VPS35	55737	genome.wustl.edu	37	16	46695765	46695765	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018206.4	-1	reviewed	p.G692	1.000	290	0.3%	186	29.6%	109	11.9%	-	-	-	HMMPfam_Vps35
MYLK3	91807	genome.wustl.edu	37	16	46762936	46762936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182493.2	-1	validated	p.Y591C	1.000	173	0%	87	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PHKB	5257	genome.wustl.edu	37	16	47644795	47644795	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.K474	1.000	184	0%	105	34.3%	31	74.1%	-	-	-	HMMPfam_PHK_AB
PHKB	5257	genome.wustl.edu	37	16	47703321	47703321	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000293.2	+1	reviewed	p.R875*	1.000	399	0.3%	242	26%	27	11.1%	-	-	-	HMMPfam_PHK_AB
ABCC11	85320	genome.wustl.edu	37	16	48248824	48248824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.T406A	0.166	191	0%	112	17.9%	0	-	benign(0.157)	tolerated(0.31)	neutral(0.041)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCC11	85320	genome.wustl.edu	37	16	48258306	48258306	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.R144*	0.000	384	0%	167	22.2%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LONP2	83752	genome.wustl.edu	37	16	48381504	48381504	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031490.2	+1	provisional	p.S675	0.995	163	0%	92	20.7%	21	0%	-	-	-	HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF52540
ZNF423	23090	genome.wustl.edu	37	16	49672702	49672702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.D121Y	1.000	34	0%	16	31.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HEATR3	55027	genome.wustl.edu	37	16	50118058	50118058	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182922.2	+1	provisional	p.D382	0.935	201	0%	126	10.3%	12	8.3%	-	-	-	superfamily_ARM repeat
SNX20	124460	genome.wustl.edu	37	16	50707937	50707937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182854.2	-1	validated	p.A111T	0.983	88	0%	38	34.2%	4	0%	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
NOD2	64127	genome.wustl.edu	37	16	50733722	50733722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022162.1	+1	reviewed	p.D133Y	0.976	85	0%	31	32.3%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_CARD,superfamily_DEATH domain
TOX3	27324	genome.wustl.edu	37	16	52473259	52473259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.A537T	0.050	55	0%	36	27.8%	4	25%	unknown(0)	tolerated(1)	-	NULL
TOX3	27324	genome.wustl.edu	37	16	52473825	52473825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.A348V	1.000	293	0%	154	39%	7	57.1%	probably_damaging(0.958)	tolerated(0.07)	deleterious(0.721)	superfamily_HMG-box
CHD9	80205	genome.wustl.edu	37	16	53190567	53190567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025134.4	+1	validated	p.G189E	1.000	470	0.2%	316	33.2%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RBL2	5934	genome.wustl.edu	37	16	53495691	53495691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005611.3	+1	validated	p.R462K	1.000	281	0%	145	15.9%	19	15.7%	unknown(0)	tolerated(1)	-	HMMPfam_RB_A,superfamily_Cyclin_like
FTO	79068	genome.wustl.edu	37	16	53844129	53844129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080432.2	+1	reviewed	p.Q41H	1.000	414	0.2%	274	28.1%	7	42.8%	probably_damaging(0.964)	tolerated(0.17)	neutral(0.465)	NULL
LPCAT2	54947	genome.wustl.edu	37	16	55565852	55565852	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017839.4	+1	reviewed	p.C223	1.000	194	0%	168	29.8%	34	88.2%	-	-	-	HMMPfam_Acyltransferase,HMMSmart_SM00563,superfamily_Glycerol-3-phosphate (1)-acyltransferase
SLC6A2	6530	genome.wustl.edu	37	16	55705912	55705912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.A157T	1.000	120	0%	81	34.6%	33	30.3%	benign(0.333)	deleterious(0.03)	deleterious(0.469)	HMMPfam_SNF
CES1	1066	genome.wustl.edu	37	16	55857481	55857481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.G174C	1.000	371	0%	218	10.6%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
CES1	1066	genome.wustl.edu	37	16	55857552	55857552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.A150V	1.000	316	0%	186	19.4%	9	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_COesterase,superfamily_SSF53474
BBS2	583	genome.wustl.edu	37	16	56548549	56548549	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031885.3	-1	reviewed	p.A54V	0.019	233	0%	133	21.1%	23	43.4%	benign(0)	tolerated(0.25)	neutral(0.037)	superfamily_WD40 repeat-like
MT1F	4494	genome.wustl.edu	37	16	56693048	56693048	+	Missense_Mutation	SNP	C	C	T	rs139420918	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005949.3	+1	validated	p.A53V	0.011	192	0%	91	22%	39	35.8%	unknown(0)	-	-	HMMPfam_Metallothio,superfamily_Metallothionein_sfam
NUP93	9688	genome.wustl.edu	37	16	56855457	56855457	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.Q202	1.000	226	0%	124	20.2%	48	41.6%	-	-	-	HMMPfam_Nic96
SLC12A3	6559	genome.wustl.edu	37	16	56916380	56916380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000339.2	+1	reviewed	p.C547Y	1.000	137	0%	77	18.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AA_permease
SLC12A3	6559	genome.wustl.edu	37	16	56936315	56936315	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000339.2	+1	reviewed	p.P926	1.000	96	0%	49	44.9%	0	-	-	-	-	NULL
NLRC5	84166	genome.wustl.edu	37	16	57088721	57088721	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.L1189	0.259	588	0.3%	306	20.9%	4	0%	-	-	-	superfamily_RNI-like
NLRC5	84166	genome.wustl.edu	37	16	57091998	57091998	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.G1256	0.804	87	0%	49	34.7%	5	0%	-	-	-	HMMSmart_SM00368,HMMSmart_SM00367,superfamily_RNI-like
PLLP	51090	genome.wustl.edu	37	16	57290917	57290917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015993.2	-1	validated	p.A153T	0.986	163	0%	87	19.5%	62	33.8%	benign(0.1)	tolerated(0.43)	neutral(0.021)	HMMPfam_MARVEL
CIAPIN1	57019	genome.wustl.edu	37	16	57474772	57474772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020313.2	-1	validated	p.E23D	0.955	168	0%	116	27.6%	46	41.3%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_DUF689
CCDC135	84229	genome.wustl.edu	37	16	57757011	57757011	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032269.5	+1	validated	p.Y502*	1.000	39	0%	39	41%	0	-	-	-	-	NULL
CNGB1	1258	genome.wustl.edu	37	16	57931757	57931757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001297.4	-1	reviewed	p.P1013H	1.000	457	0%	219	26.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
TEPP	374739	genome.wustl.edu	37	16	58011785	58011785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199046.2	+1	validated	p.A77V	0.981	147	0%	87	33.3%	0	-	benign(0.009)	tolerated(0.07)	neutral(0.320)	NULL
TEPP	374739	genome.wustl.edu	37	16	58011824	58011824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199046.2	+1	validated	p.A90V	0.774	95	0%	47	19.1%	0	-	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	NULL
TEPP	374739	genome.wustl.edu	37	16	58019449	58019449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199046.2	+1	validated	p.L278M	0.926	59	0%	26	23.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
C16orf80	29105	genome.wustl.edu	37	16	58150047	58150047	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013242.2	-1	validated	p.Y58	0.436	232	0%	132	28%	41	43.9%	-	-	-	HMMPfam_DUF667
CCDC113	29070	genome.wustl.edu	37	16	58287994	58287994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014157.3	+1	validated	p.E107D	0.999	158	0%	95	27.4%	9	44.4%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
SETD6	79918	genome.wustl.edu	37	16	58550468	58550468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024860.2	+1	validated	p.Y164C	0.951	37	0%	26	19.2%	26	26.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SET,superfamily_SET domain
CDH11	1009	genome.wustl.edu	37	16	64984852	64984852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.P571L	1.000	72	0%	56	10.7%	26	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH11	1009	genome.wustl.edu	37	16	65032568	65032568	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.E140	1.000	308	0%	150	25.3%	13	15.3%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66420804	66420804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.D101	0.832	81	0%	37	24.3%	8	0%	benign(0.033)	deleterious(0)	neutral(0.446)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66426231	66426231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.P388T	0.613	273	0%	150	24.7%	3	0%	possibly_damaging(0.538)	tolerated(1)	neutral(0.182)	HMMPfam_Cadherin,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66430022	66430022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.D426	0.405	169	0%	89	33.7%	3	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CMTM2	146225	genome.wustl.edu	37	16	66613524	66613524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144673.2	+1	reviewed	p.A5V	0.000	69	0%	34	38.2%	0	-	unknown(0)	deleterious(0)	-	NULL
CMTM2	146225	genome.wustl.edu	37	16	66621836	66621836	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144673.2	+1	reviewed	p.A187	0.016	376	0%	230	10.9%	0	-	-	-	-	HMMPfam_MARVEL
CA7	766	genome.wustl.edu	37	16	66885607	66885607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005182.2	+1	reviewed	p.A165V	0.997	67	0%	33	27.3%	0	-	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
CDH16	1014	genome.wustl.edu	37	16	66946631	66946631	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004062.2	-1	reviewed	p.P406	0.027	58	0%	22	22.7%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH16	1014	genome.wustl.edu	37	16	66947132	66947132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004062.2	-1	reviewed	p.P319H	0.944	199	0%	107	29%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CES3	23491	genome.wustl.edu	37	16	66997159	66997159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024922.4	+1	validated	p.D54Y	0.049	117	0%	62	32.3%	1	100%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
KIAA0895L	653319	genome.wustl.edu	37	16	67213971	67213971	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040715.1	-1	validated	p.C181	0.930	175	0%	88	11.4%	4	0%	-	-	-	NULL
KIAA0895L	653319	genome.wustl.edu	37	16	67214441	67214441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040715.1	-1	validated	p.R25C	0.006	66	0%	30	20%	8	62.5%	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
EXOC3L1	283849	genome.wustl.edu	37	16	67219045	67219045	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178516.3	-1	validated	p.T581	0.000	26	0%	12	41.7%	3	0%	-	-	-	HMMPfam_Sec6
SLC9A5	6553	genome.wustl.edu	37	16	67292313	67292313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004594.2	+1	validated	p.R530M	1.000	33	3%	12	33.3%	0	-	possibly_damaging(0.482)	deleterious(0)	deleterious(0.605)	NULL
PLEKHG4	25894	genome.wustl.edu	37	16	67319434	67319434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129727.1	+1	reviewed	p.R813C	1.000	140	0%	58	15.5%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CTCF	10664	genome.wustl.edu	37	16	67645223	67645223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.G163E	1.000	292	0%	146	27.4%	28	39.2%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
ACD	65057	genome.wustl.edu	37	16	67691532	67691532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082486.1	-1	reviewed	p.G538W	0.012	60	0%	22	22.7%	20	60%	benign(0.063)	deleterious(0.02)	neutral(0.387)	NULL
RANBP10	57610	genome.wustl.edu	37	16	67761694	67761694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020850.1	-1	provisional	p.R527Q	0.995	69	0%	32	25%	21	33.3%	probably_damaging(0.994)	tolerated(0.37)	deleterious(0.471)	HMMSmart_CRA,HMMPfam_RanBPM_CRA
TSNAXIP1	55815	genome.wustl.edu	37	16	67859112	67859112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018430.2	+1	validated	p.L197I	0.995	117	0%	51	21.6%	0	-	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
EDC4	23644	genome.wustl.edu	37	16	67911221	67911221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.A185T	1.000	88	0%	28	42.9%	67	44.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EDC4	23644	genome.wustl.edu	37	16	67912294	67912294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.R346W	0.798	168	0%	72	11.1%	54	20.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00320,superfamily_WD40 repeat-like
NFATC3	4775	genome.wustl.edu	37	16	68156017	68156017	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173165.1	+1	reviewed	p.S77	0.893	525	0%	354	15.5%	11	18.1%	-	-	-	NULL
ESRP2	80004	genome.wustl.edu	37	16	68266347	68266347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024939.2	-1	validated	p.R294H	1.000	116	0%	46	23.9%	9	33.3%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_SSF54928
SMPD3	55512	genome.wustl.edu	37	16	68398780	68398780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018667.3	-1	validated	p.D477N	1.000	35	0%	16	25%	8	37.5%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ZFP90	146198	genome.wustl.edu	37	16	68597930	68597930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133458.2	+1	provisional	p.R414G	1.000	295	0%	193	33.7%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMCO7	79613	genome.wustl.edu	37	16	68912112	68912112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024562.1	+1	validated	p.R408H	0.087	152	0.7%	82	14.6%	1	100%	benign(0.003)	tolerated(0.41)	neutral(0.015)	superfamily_ARM repeat
HAS3	3038	genome.wustl.edu	37	16	69148509	69148509	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005329.2	+1	reviewed	p.T334	0.992	89	0%	36	22.2%	24	37.5%	-	-	-	superfamily_SSF53448
NOB1	28987	genome.wustl.edu	37	16	69783125	69783125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014062.1	-1	provisional	p.Q172H	1.000	161	0%	95	10.5%	148	18.2%	possibly_damaging(0.774)	tolerated(0.33)	neutral(0.312)	NULL
WWP2	11060	genome.wustl.edu	37	16	69832615	69832615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007014.3	+1	reviewed	p.R34H	1.000	345	0.3%	232	25.4%	14	28.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PDXDC2P	283970	genome.wustl.edu	37	16	70068236	70068236	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000325845	-1	known	p.H139	0.981	267	0%	160	29.4%	23	0%	-	-	-	superfamily_PLP-dependent transferases
PDPR	55066	genome.wustl.edu	37	16	70177428	70177428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017990.3	+1	validated	p.A541T	1.000	169	0%	107	15.9%	7	57.1%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	HMMPfam_GCV_T,superfamily_SSF103025
ENSG00000205152	0	genome.wustl.edu	37	16	70254649	70254649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378955	-1	known	p.T732K	1.000	29	0%	15	26.7%	8	62.5%	-	-	-	NULL
ENSG00000205152	0	genome.wustl.edu	37	16	70265341	70265341	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378955	-1	known	p.H343	1.000	145	0.7%	120	17.5%	6	66.6%	-	-	-	NULL
AARS	16	genome.wustl.edu	37	16	70305684	70305684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001605.2	-1	reviewed	p.R224M	1.000	98	0%	57	28.1%	75	1.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2c,superfamily_SSF55681
ST3GAL2	6483	genome.wustl.edu	37	16	70422301	70422301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006927.3	-1	reviewed	p.A228T	1.000	275	0%	148	23%	8	37.5%	benign(0)	tolerated(0.95)	-	HMMPfam_Glyco_transf_29
COG4	25839	genome.wustl.edu	37	16	70514979	70514979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015386.2	-1	validated	p.E768D	1.000	30	0%	11	45.5%	97	38.1%	possibly_damaging(0.882)	tolerated(0.09)	deleterious(0.641)	NULL
COG4	25839	genome.wustl.edu	37	16	70548291	70548291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015386.2	-1	validated	p.R164H	1.000	119	0%	66	31.8%	39	35.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SF3B3	23450	genome.wustl.edu	37	16	70573100	70573100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012426.4	+1	reviewed	p.F353L	1.000	255	0%	156	27.6%	74	56.7%	benign(0.077)	tolerated(0.06)	neutral(0.328)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70863566	70863566	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.I4688	1.000	33	0%	36	22.2%	0	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	70955004	70955004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.G2424	0.000	398	0.5%	256	8.6%	0	-	-	-	-	NULL
FTSJD1	55783	genome.wustl.edu	37	16	71319714	71319714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099642.1	-1	validated	p.G37D	0.191	186	0.5%	93	29%	8	25%	benign(0.282)	tolerated(0.62)	neutral(0.090)	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71683714	71683714	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.A1017	0.760	325	0.9%	195	33.8%	3	66.6%	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
PHLPP2	23035	genome.wustl.edu	37	16	71689249	71689249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.L827F	1.000	377	0%	202	10.9%	2	0%	possibly_damaging(0.631)	deleterious(0.01)	deleterious(0.626)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
PHLPP2	23035	genome.wustl.edu	37	16	71703208	71703208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.S533N	1.000	323	0%	186	27.4%	1	0%	possibly_damaging(0.531)	tolerated(0.59)	neutral(0.183)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
PHLPP2	23035	genome.wustl.edu	37	16	71724422	71724422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.K203N	1.000	304	0%	171	22.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_PH domain-like
PHLPP2	23035	genome.wustl.edu	37	16	71748506	71748506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.V65I	1.000	121	0.8%	77	10.4%	1	0%	probably_damaging(0.963)	deleterious(0)	deleterious(0.850)	NULL
AP1G1	164	genome.wustl.edu	37	16	71790003	71790003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030007.1	-1	reviewed	p.K386R	1.000	445	0.2%	288	28.1%	24	58.3%	benign(0.003)	tolerated(0.64)	neutral(0.003)	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP1G1	164	genome.wustl.edu	37	16	71803538	71803538	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030007.1	-1	reviewed	p.A210	0.932	446	0%	256	28.5%	22	54.5%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
TXNL4B	54957	genome.wustl.edu	37	16	72120629	72120629	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142317.1	-1	validated	p.I119	1.000	203	0%	138	29%	28	28.5%	-	-	-	HMMPfam_DIM1,superfamily_Thiordxn-like_fd
DHX38	9785	genome.wustl.edu	37	16	72130873	72130873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014003.3	+1	reviewed	p.S159L	0.097	136	0%	90	37.8%	23	52.1%	benign(0.119)	tolerated(0.35)	neutral(0.030)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72830347	72830347	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.P2078	0.198	70	1.4%	28	35.7%	6	66.6%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72830572	72830572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.E2003D	1.000	360	0%	176	30.1%	6	66.6%	unknown(0)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72831025	72831025	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.Q1852	1.000	345	0%	175	29.1%	5	40%	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72831358	72831360	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.Q1741in_frame_del	0.993:0.992:0.988	-	-	-	-	-	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72831870	72831870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.H1571Y	1.000	440	0%	212	29.2%	14	50%	unknown(0)	-	-	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72984615	72984615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R990H	1.000	182	0%	100	16%	11	9%	unknown(0)	-	-	HMMSmart_SM00451,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72991586	72991586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R820H	1.000	159	0%	55	32.7%	6	50%	unknown(0)	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFHX3	463	genome.wustl.edu	37	16	72993170	72993170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.G292E	1.000	146	1.4%	81	27.2%	7	42.8%	unknown(0)	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
GLG1	2734	genome.wustl.edu	37	16	74486141	74486141	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027264.1	-1	validated	NULL	0.001	25	0%	10	70%	79	25.3%	-	-	-	-
ENSG00000251794	0	genome.wustl.edu	37	16	74490474	74490474	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515985	+1	novel	NULL	0.432	59	0%	41	34.1%	0	-	-	-	-	-
GLG1	2734	genome.wustl.edu	37	16	74516961	74516961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012201.5	-1	validated	p.R545C	1.000	323	0%	233	29.6%	76	46%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cys_rich_FGFR
CFDP1	10428	genome.wustl.edu	37	16	75428995	75428995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006324.2	-1	validated	p.G215R	0.984	110	0.9%	52	36.5%	52	48%	possibly_damaging(0.643)	tolerated(0.15)	neutral(0.467)	NULL
CFDP1	10428	genome.wustl.edu	37	16	75446454	75446454	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006324.2	-1	validated	p.V127	0.066	1323	0.1%	778	25.7%	60	61.6%	-	-	-	NULL
CHST5	23563	genome.wustl.edu	37	16	75563577	75563577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024533.3	-1	validated	p.A236T	0.131	31	0%	11	54.5%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
GABARAPL2	11345	genome.wustl.edu	37	16	75602094	75602094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007285.6	+1	validated	p.V84F	1.000	218	0%	93	9.7%	234	18.3%	benign(0.398)	deleterious(0.01)	deleterious(0.534)	HMMPfam_MAP1_LC3,superfamily_Ubiquitin-like
KARS	3735	genome.wustl.edu	37	16	75662603	75662603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130089.1	-1	reviewed	p.A548D	1.000	76	0%	37	21.6%	389	42.6%	benign(0.048)	tolerated(0.65)	neutral(0.006)	HMMPfam_tRNA-synt_2,superfamily_SSF55681
TERF2IP	54386	genome.wustl.edu	37	16	75690141	75690141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018975.3	+1	reviewed	p.T278A	0.998	276	0%	140	25%	72	40.2%	benign(0.021)	tolerated(0.52)	neutral(0.010)	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76509935	76509935	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033401.3	+1	reviewed	p.A585V	1.000	98	0%	47	19.1%	0	-	-	-	-	NULL
CNTNAP4	85445	genome.wustl.edu	37	16	76523715	76523715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138994.3	+1	validated	p.R599L	0.061	76	0%	46	17.4%	0	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	superfamily_Concanavalin A-like lectins/glucanases
ADAMTS18	170692	genome.wustl.edu	37	16	77326997	77326997	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199355.2	-1	reviewed	p.Q1055	1.000	187	0%	145	23.4%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
VAT1L	57687	genome.wustl.edu	37	16	77859199	77859199	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020927.1	+1	provisional	p.C140	1.000	126	0%	106	39.6%	0	-	-	-	-	superfamily_GroES_like,HMMPfam_ADH_N
WWOX	51741	genome.wustl.edu	37	16	79245600	79245600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402655	+1	known	p.L169I	0.566	150	0%	74	18.9%	6	0%	unknown(0)	deleterious(0)	-	NULL
MAF	4094	genome.wustl.edu	37	16	79632895	79632895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005360.4	-1	reviewed	p.A302V	1.000	47	0%	15	26.7%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_bZIP_Maf,HMMSmart_BRLZ,superfamily_Euk_transcr_DNA
C16orf46	123775	genome.wustl.edu	37	16	81095632	81095632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152337.2	-1	validated	p.L108F	0.008	315	0%	159	22%	1	0%	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81204599	81204599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076780.1	-1	reviewed	p.E953D	0.947	75	0%	58	19%	0	-	possibly_damaging(0.913)	tolerated(0.22)	neutral(0.406)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81209235	81209235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076780.1	-1	reviewed	p.T853M	0.014	242	0%	110	31.8%	0	-	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	NULL
BCMO1	53630	genome.wustl.edu	37	16	81298389	81298389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017429.2	+1	reviewed	p.P206S	0.155	140	0%	60	28.3%	1	0%	benign(0.012)	tolerated(0.09)	neutral(0.297)	HMMPfam_RPE65
GAN	8139	genome.wustl.edu	37	16	81398611	81398611	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022041.3	+1	reviewed	p.I423	1.000	199	0%	113	18.6%	1	0%	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
PLCG2	5336	genome.wustl.edu	37	16	81941355	81941355	+	Missense_Mutation	SNP	G	G	T	rs151013036	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002661.2	+1	validated	p.Q511H	0.982	62	0%	34	20.6%	4	0%	probably_damaging(0.991)	tolerated(0.07)	deleterious(0.763)	superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729
MPHOSPH6	10200	genome.wustl.edu	37	16	82182981	82182981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005792.2	-1	validated	p.H95Y	0.907	273	0%	169	29.6%	47	31.9%	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_MPP6
KCNG4	93107	genome.wustl.edu	37	16	84270764	84270764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172347.1	-1	reviewed	p.E110K	1.000	118	0%	61	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_K_tetra,superfamily_POZ domain
USP10	9100	genome.wustl.edu	37	16	84778938	84778938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005153.2	+1	reviewed	p.V284A	1.000	57	0%	32	12.5%	48	41.6%	possibly_damaging(0.751)	tolerated(0.2)	neutral(0.325)	NULL
CRISPLD2	83716	genome.wustl.edu	37	16	84906631	84906631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031476.3	+1	validated	p.G339R	0.876	235	0%	121	28.1%	7	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
FOXC2	2303	genome.wustl.edu	37	16	86601133	86601133	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005251.2	+1	reviewed	p.P64	1.000	56	0%	27	37%	0	-	-	-	-	NULL
FOXC2	2303	genome.wustl.edu	37	16	86601457	86601457	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005251.2	+1	reviewed	p.D172	1.000	42	0%	17	29.4%	0	-	-	-	-	NULL
FOXL1	2300	genome.wustl.edu	37	16	86612599	86612599	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005250.2	+1	validated	p.R90	1.000	90	0%	32	18.8%	0	-	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
FBXO31	79791	genome.wustl.edu	37	16	87380857	87380857	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024735.3	-1	validated	e3-1	1.000	309	0%	152	11.8%	0	-	-	-	-	-
JPH3	57338	genome.wustl.edu	37	16	87678543	87678543	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020655.2	+1	reviewed	p.L354	1.000	8	0.000	12	0.583	0	-	-	-	-	NULL
SLC7A5	8140	genome.wustl.edu	37	16	87866581	87866581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003486.5	-1	validated	p.T507A	0.955	68	0%	37	10.8%	51	11.7%	benign(0.066)	deleterious(0.02)	neutral(0.388)	NULL
ZNF778	197320	genome.wustl.edu	37	16	89294058	89294058	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182531.2	+1	validated	p.C426	1.000	310	0.3%	173	27.7%	5	20%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF778	197320	genome.wustl.edu	37	16	89294590	89294590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182531.2	+1	validated	p.L604I	0.008	421	0%	201	35.3%	6	50%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ANKRD11	29123	genome.wustl.edu	37	16	89348079	89348079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013275.4	-1	validated	p.A1624V	0.000	338	0%	179	19.6%	23	34.7%	benign(0)	deleterious(0.04)	neutral(0.349)	superfamily_Ankyrin repeat
SPG7	6687	genome.wustl.edu	37	16	89597111	89597111	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003119.2	+1	reviewed	p.R294	0.796	116	0.9%	70	11.4%	32	3.1%	-	-	-	HMMPfam_FtsH_ext,superfamily_P-loop containing nucleoside triphosphate hydrolases
SPG7	6687	genome.wustl.edu	37	16	89598392	89598392	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003119.2	+1	reviewed	p.T356	0.001	21	0%	14	28.6%	33	30.3%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
CDK10	8558	genome.wustl.edu	37	16	89755724	89755724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052988.4	+1	reviewed	p.G51D	1.000	26	0%	12	41.7%	25	48%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
TUBB3	10381	genome.wustl.edu	37	16	90001642	90001642	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006086.2	+1	validated	p.P261	0.015	52	0%	20	20%	23	26%	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
TUBB3	10381	genome.wustl.edu	37	16	90001971	90001971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006086.2	+1	validated	p.S371N	1.000	152	0%	68	11.8%	19	0%	benign(0.032)	deleterious(0.03)	neutral(0.366)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
C17orf97	400566	genome.wustl.edu	37	17	263016	263016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013672.4	+1	validated	p.R128C	0.412	229	0%	121	31.4%	14	14.2%	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	NULL
GEMIN4	50628	genome.wustl.edu	37	17	650449	650449	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015721.2	-1	reviewed	p.S278	0.001	112	0%	59	16.9%	28	50%	-	-	-	NULL
GLOD4	51031	genome.wustl.edu	37	17	673290	673290	+	Silent	SNP	G	G	A	rs112396332	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016080.3	-1	validated	p.A246	0.211	373	0%	215	33%	81	46.9%	-	-	-	HMMPfam_Glyoxalase,superfamily_SSF54593
GLOD4	51031	genome.wustl.edu	37	17	673382	673382	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016080.3	-1	validated	p.D216Y	1.000	304	0%	165	10.3%	69	11.5%	benign(0.354)	deleterious(0.01)	deleterious(0.518)	HMMPfam_Glyoxalase,superfamily_SSF54593
RNMTL1	55178	genome.wustl.edu	37	17	686545	686545	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018146.2	+1	provisional	p.L179	0.629	78	0%	47	36.2%	38	47.3%	-	-	-	HMMPfam_SpoU_sub_bind,superfamily_SSF55315
ABR	29	genome.wustl.edu	37	17	986862	986862	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.S179	1.000	86	0%	40	40%	41	17%	-	-	-	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
YWHAE	7531	genome.wustl.edu	37	17	1248739	1248739	+	RNA	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024058.1	-1	reviewed	NULL	1.000	406	0.2%	254	27.2%	977	46.1%	-	-	-	-
YWHAE	7531	genome.wustl.edu	37	17	1303472	1303472	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024058.1	-1	reviewed	NULL	1.000	31	0%	16	25%	238	42.4%	-	-	-	-
PRPF8	10594	genome.wustl.edu	37	17	1557250	1557250	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.I2016	1.000	209	0%	73	19.2%	343	16.6%	-	-	-	NULL
PRPF8	10594	genome.wustl.edu	37	17	1565229	1565229	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.G1331	0.103	250	0%	117	35%	107	52.3%	-	-	-	HMMPfam_U5_2-snRNA_bdg
PRPF8	10594	genome.wustl.edu	37	17	1565373	1565373	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.E1283	1.000	291	0.3%	184	37.5%	107	50.4%	-	-	-	HMMPfam_U5_2-snRNA_bdg
DPH1	1801	genome.wustl.edu	37	17	1936866	1936866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001383.3	+1	validated	p.Q48H	1.000	90	0%	54	22.2%	15	46.6%	possibly_damaging(0.492)	deleterious(0.02)	deleterious(0.547)	NULL
TSR1	55720	genome.wustl.edu	37	17	2237977	2237977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.A257V	0.323	145	1.4%	50	30%	19	47.3%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_AARP2CN,HMMSmart_AARP2CN
LOC100288674	100288674	genome.wustl.edu	37	17	2600047	2600047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343499.1	+1	model	p.L151F	1.000	32	0%	14	57.1%	41	46.3%	-	-	-	NULL
OR1D4	653166	genome.wustl.edu	37	17	2966324	2966324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003552.2	-1	provisional	p.H211R	0.000	131	0%	72	30.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR1D2	4991	genome.wustl.edu	37	17	2995362	2995362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002548.2	-1	validated	p.R310M	0.006	482	0.2%	271	28.4%	0	-	benign(0.313)	tolerated(0.06)	neutral(0.420)	superfamily_SSF81321
ASPA	443	genome.wustl.edu	37	17	3402370	3402370	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000049.2	+1	reviewed	p.C310*	0.571	149	0%	98	35.7%	0	-	-	-	-	NULL
SHPK	23729	genome.wustl.edu	37	17	3518750	3518750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013276.2	-1	reviewed	p.A302V	0.987	64	0%	29	34.5%	9	33.3%	benign(0.424)	tolerated(0.15)	neutral(0.379)	superfamily_Actin-like ATPase domain
SHPK	23729	genome.wustl.edu	37	17	3533564	3533564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013276.2	-1	reviewed	p.R82Q	0.014	38	0%	18	50%	1	0%	benign(0.002)	tolerated(0.82)	neutral(0.001)	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
GSG2	83903	genome.wustl.edu	37	17	3629303	3629303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031965.2	+1	validated	p.R692C	0.303	204	1%	111	26.1%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ITGAE	3682	genome.wustl.edu	37	17	3660423	3660423	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002208.4	-1	reviewed	p.G342	0.152	342	0%	158	22.2%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
CAMKK1	84254	genome.wustl.edu	37	17	3786429	3786429	+	Silent	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172207.2	-1	reviewed	p.G185	0.773	43	0%	21	33.3%	6	33.3%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
P2RX1	5023	genome.wustl.edu	37	17	3802994	3802994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002558.2	-1	reviewed	p.C270Y	1.000	80	0%	27	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR
CYB5D2	124936	genome.wustl.edu	37	17	4047151	4047151	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144611.3	+1	validated	p.G34	0.000	28	0%	14	42.9%	13	46.1%	-	-	-	superfamily_Cyt_B5
ANKFY1	51479	genome.wustl.edu	37	17	4088196	4088196	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016376.3	-1	validated	p.D539V	0.109	123	0%	56	12.5%	12	8.3%	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4111231	4111231	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016376.3	-1	validated	p.S243	0.902	292	0%	158	23.4%	16	37.5%	-	-	-	superfamily_ANK
MYBBP1A	10514	genome.wustl.edu	37	17	4442885	4442885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105538.1	-1	validated	p.P1271H	0.009	274	0.4%	103	28.2%	58	36.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SMTNL2	342527	genome.wustl.edu	37	17	4495709	4495709	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114974.1	+1	validated	p.S151	0.000	23	0%	17	41.2%	0	-	-	-	-	NULL
SMTNL2	342527	genome.wustl.edu	37	17	4496281	4496281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114974.1	+1	validated	p.R182M	0.893	61	0%	15	33.3%	0	-	possibly_damaging(0.509)	deleterious(0.01)	deleterious(0.576)	NULL
ALOX15	246	genome.wustl.edu	37	17	4541966	4541966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001140.3	-1	validated	p.A186T	0.142	113	0%	55	12.7%	0	-	benign(0.005)	tolerated(0.48)	neutral(0.011)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
PELP1	27043	genome.wustl.edu	37	17	4578237	4578237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014389.2	-1	validated	p.K430M	1.000	514	0%	267	30%	60	43.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_NUC202
PELP1	27043	genome.wustl.edu	37	17	4594286	4594286	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014389.2	-1	validated	p.F106C	1.000	221	0%	141	38.3%	67	46.2%	probably_damaging(0.989)	tolerated(0.17)	deleterious(0.498)	HMMPfam_NUC201
PLD2	5338	genome.wustl.edu	37	17	4712817	4712817	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002663.3	+1	validated	p.S195	0.974	129	0%	93	38.7%	21	47.6%	-	-	-	superfamily_PX domain
MINK1	50488	genome.wustl.edu	37	17	4799630	4799630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153827.4	+1	reviewed	p.P1203H	1.000	105	0%	57	33.3%	56	39.2%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_CNH,HMMSmart_SM00036
GP1BA	2811	genome.wustl.edu	37	17	4837470	4837470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000173.5	+1	reviewed	p.D511G	0.003	307	0.3%	174	11.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ENO3	2027	genome.wustl.edu	37	17	4858806	4858806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001976.3	+1	reviewed	p.D258N	1.000	653	0%	327	29.1%	6	16.6%	benign(0.402)	deleterious(0.03)	deleterious(0.493)	HMMPfam_Enolase_C,superfamily_Enolase C-terminal domain-like
CAMTA2	23125	genome.wustl.edu	37	17	4873783	4873783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.R953W	1.000	468	0%	250	28.8%	11	54.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4883116	4883116	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.F501I	1.000	317	0%	150	18%	5	60%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
KIF1C	10749	genome.wustl.edu	37	17	4904107	4904107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.S49R	1.000	230	0%	107	10.3%	57	15.7%	probably_damaging(0.992)	tolerated(0.15)	deleterious(0.689)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
SLC52A1	55065	genome.wustl.edu	37	17	4936394	4936394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104577.1	-1	validated	p.G402D	0.656	73	0%	42	28.6%	1	0%	benign(0.066)	tolerated(1)	neutral(0.004)	NULL
ZFP3	124961	genome.wustl.edu	37	17	4994943	4994943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153018.2	+1	validated	p.E48D	0.001	326	0%	119	28.6%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
RABEP1	9135	genome.wustl.edu	37	17	5238555	5238555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.E148D	0.802	201	0%	105	26.7%	33	42.4%	benign(0.009)	tolerated(0.21)	neutral(0.044)	HMMPfam_Rabaptin
RABEP1	9135	genome.wustl.edu	37	17	5264689	5264689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004703.4	+1	validated	p.A428S	1.000	273	0%	141	31.2%	26	30.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NUP88	4927	genome.wustl.edu	37	17	5294939	5294939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002532.3	-1	reviewed	p.L476M	0.993	126	0%	80	31.2%	70	32.8%	possibly_damaging(0.691)	deleterious(0.04)	deleterious(0.597)	HMMPfam_Nup88
NUP88	4927	genome.wustl.edu	37	17	5308489	5308489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002532.3	-1	reviewed	p.A311E	1.000	212	0%	110	33.6%	59	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nup88
NLRP1	22861	genome.wustl.edu	37	17	5405159	5405159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033053.2	-1	reviewed	p.C1368Y	0.000	177	0%	91	9.9%	1	0%	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
WSCD1	23302	genome.wustl.edu	37	17	6014150	6014150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015253.1	+1	validated	p.S357P	0.999	614	0%	331	15.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF52540
WSCD1	23302	genome.wustl.edu	37	17	6023684	6023684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015253.1	+1	validated	p.D477E	1.000	142	0%	63	11.1%	0	-	benign(0.052)	tolerated(0.24)	neutral(0.041)	superfamily_SSF52540
FAM64A	54478	genome.wustl.edu	37	17	6351012	6351012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019013.1	+1	provisional	p.R175Q	0.058	86	0%	38	23.7%	13	46.1%	benign(0.29)	tolerated(0.33)	neutral(0.113)	HMMPfam_DUF1466
PITPNM3	83394	genome.wustl.edu	37	17	6387539	6387539	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.S116	0.047	158	0%	89	13.5%	4	25%	-	-	-	NULL
KIAA0753	9851	genome.wustl.edu	37	17	6515273	6515273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014804.2	-1	validated	p.R504M	0.958	588	0%	417	30.5%	11	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC13A5	284111	genome.wustl.edu	37	17	6599224	6599224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177550.3	-1	validated	p.K292N	0.000	175	0%	77	28.6%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_Na_sulph_symp
ALOX12	239	genome.wustl.edu	37	17	6913670	6913670	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000697.2	+1	validated	p.A640	0.997	271	0%	137	31.4%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ASGR2	433	genome.wustl.edu	37	17	7012090	7012090	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080913.2	-1	reviewed	e2+1	0.983	91	0%	60	30%	0	-	-	-	-	-
DLG4	1742	genome.wustl.edu	37	17	7106870	7106870	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001365.3	-1	reviewed	p.R169	1.000	168	0%	109	26.6%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
DLG4	1742	genome.wustl.edu	37	17	7107070	7107070	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001365.3	-1	reviewed	p.P135	0.299	135	0.7%	67	34.3%	2	0%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SLC2A4	6517	genome.wustl.edu	37	17	7187869	7187869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042.2	+1	reviewed	p.R265W	1.000	119	0.8%	32	25%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
YBX2	51087	genome.wustl.edu	37	17	7193037	7193037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015982.3	-1	validated	p.R286S	1.000	72	0%	42	16.7%	6	33.3%	possibly_damaging(0.804)	deleterious(0.03)	deleterious(0.667)	NULL
ACAP1	9744	genome.wustl.edu	37	17	7250513	7250513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014716.3	+1	validated	p.S432I	1.000	87	0%	33	24.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ArfGap,HMMSmart_ArfGap,superfamily_ArfGAP
NLGN2	57555	genome.wustl.edu	37	17	7319075	7319075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020795.2	+1	reviewed	p.R428Q	1.000	251	0%	118	22%	11	27.2%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	HMMPfam_COesterase,superfamily_SSF53474
ZBTB4	57659	genome.wustl.edu	37	17	7367081	7367081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128833.1	-1	validated	p.P407L	1.000	89	0%	34	23.5%	24	4.1%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
POLR2A	5430	genome.wustl.edu	37	17	7400726	7400726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.R291W	1.000	144	0%	84	23.8%	74	54%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7402440	7402440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.R473Q	1.000	254	0.4%	120	25.8%	104	40.3%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_RNA_pol_Rpb1_2,superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7404671	7404671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.T705N	1.000	504	0%	217	30.4%	122	52.4%	possibly_damaging(0.824)	tolerated(0.05)	deleterious(0.657)	superfamily_SSF64484
POLR2A	5430	genome.wustl.edu	37	17	7414824	7414824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000937.3	+1	validated	p.G1340S	1.000	101	0%	69	20.3%	185	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RNA_pol_Rpb1_5,superfamily_SSF64484
TNFSF12-TNFSF13	407977	genome.wustl.edu	37	17	7453498	7453498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172089.2	+1	reviewed	p.R90Q	0.997	251	0%	110	28.2%	34	35.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EIF4A1	1973	genome.wustl.edu	37	17	7480777	7480777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001416.2	+1	validated	p.R247H	1.000	218	0%	124	35.5%	1248	40.7%	possibly_damaging(0.603)	deleterious(0)	deleterious(0.653)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPDU1	9526	genome.wustl.edu	37	17	7490024	7490024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004870.3	+1	reviewed	p.A106V	1.000	170	0%	73	27.4%	137	46.7%	benign(0.01)	tolerated(0.21)	neutral(0.044)	NULL
SOX15	6665	genome.wustl.edu	37	17	7491727	7491727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006942.1	-1	reviewed	p.A224V	0.134	128	0%	67	10.4%	2	0%	benign(0.007)	deleterious(0)	neutral(0.445)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7643239	7643239	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.W453*	1.000	153	0%	67	29.9%	0	-	-	-	-	HMMPfam_DHC_N1
DNAH2	146754	genome.wustl.edu	37	17	7662752	7662752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.W821R	1.000	285	0%	142	26.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7674216	7674216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.I1443L	0.999	204	0%	135	30.4%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_DHC_N2
DNAH2	146754	genome.wustl.edu	37	17	7680144	7680144	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.K1665	1.000	55	0%	38	26.3%	0	-	-	-	-	NULL
DNAH2	146754	genome.wustl.edu	37	17	7700837	7700837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.P2690H	0.994	451	0%	200	31%	0	-	benign(0.039)	tolerated(0.13)	neutral(0.255)	NULL
DNAH2	146754	genome.wustl.edu	37	17	7710587	7710587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.R3188C	0.967	225	0.4%	132	19.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KDM6B	23135	genome.wustl.edu	37	17	7748968	7748968	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080424.1	+1	provisional	p.P32	1.000	120	0%	65	27.7%	11	54.5%	-	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7797492	7797492	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452447	+1	known	p.W199R	0.996	353	0%	178	10.7%	19	0%	-	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7808449	7808449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.E1427D	1.000	535	0%	268	28%	51	60.7%	benign(0.041)	-	-	HMMPfam_DUF1086
CNTROB	116840	genome.wustl.edu	37	17	7847814	7847814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380262	+1	known	p.R531Q	0.539	199	0.5%	106	12.3%	23	13%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	NULL
ALOXE3	59344	genome.wustl.edu	37	17	8000061	8000061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021628.2	-1	reviewed	p.A674T	0.103	194	0%	117	28.2%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
AURKB	9212	genome.wustl.edu	37	17	8108344	8108344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004217.2	-1	validated	p.A294T	0.000	102	0%	49	28.6%	46	52.1%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
AURKB	9212	genome.wustl.edu	37	17	8108544	8108544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004217.2	-1	validated	p.R284H	0.998	63	0%	27	37%	67	49.2%	possibly_damaging(0.876)	deleterious(0)	deleterious(0.786)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CTC1	80169	genome.wustl.edu	37	17	8135416	8135416	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025099.5	-1	validated	p.S730	1.000	123	0%	74	24.3%	9	66.6%	-	-	-	NULL
PFAS	5198	genome.wustl.edu	37	17	8172123	8172123	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012393.2	+1	reviewed	p.L1219	1.000	46	0%	20	35%	17	52.9%	-	-	-	superfamily_Class I glutamine amidotransferase-like
SLC25A35	399512	genome.wustl.edu	37	17	8198089	8198089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201520.1	-1	provisional	p.A13T	1.000	111	0%	58	24.1%	2	50%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
ARHGEF15	22899	genome.wustl.edu	37	17	8215887	8215887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173728.2	+1	reviewed	p.A177V	0.003	51	0%	23	21.7%	4	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
KRBA2	124751	genome.wustl.edu	37	17	8272905	8272905	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213597.2	-1	provisional	p.W342*	1.000	191	0%	90	27.8%	2	50%	-	-	-	superfamily_RNaseH_fold
KRBA2	124751	genome.wustl.edu	37	17	8272950	8272950	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213597.2	-1	provisional	p.G327	0.437	214	0%	111	27.9%	0	-	-	-	-	superfamily_RNaseH_fold
NDEL1	81565	genome.wustl.edu	37	17	8350158	8350158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030808.3	+1	reviewed	p.E109D	0.998	153	0.7%	115	25.2%	32	46.8%	benign(0)	tolerated(0.9)	-	NULL
MYH10	4628	genome.wustl.edu	37	17	8379139	8379139	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.P1972S	1.000	151	0%	78	28.2%	65	46.1%	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
MYH10	4628	genome.wustl.edu	37	17	8380302	8380302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.A1893V	1.000	45	0%	21	28.6%	55	36.3%	benign(0.017)	tolerated(0.47)	neutral(0.011)	HMMPfam_Myosin_tail_1
MYH10	4628	genome.wustl.edu	37	17	8417138	8417138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.L829S	1.000	322	0%	167	32.9%	11	45.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH10	4628	genome.wustl.edu	37	17	8421970	8421970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.C797Y	1.000	175	0%	118	29.7%	25	24%	possibly_damaging(0.77)	deleterious(0)	deleterious(0.730)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH10	4628	genome.wustl.edu	37	17	8526441	8526441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005964.1	-1	validated	p.R42C	1.000	482	0%	343	29.2%	6	50%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Myosin_N,superfamily_Myosin S1 fragment N-terminal domain
PIK3R5	23533	genome.wustl.edu	37	17	8789891	8789891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142633.1	-1	validated	p.E646G	0.719	22	0%	13	46.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PI3K_1B_p101
NTN1	9423	genome.wustl.edu	37	17	9083206	9083206	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004822.2	+1	reviewed	p.T430	0.082	45	0%	22	27.3%	2	0%	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_SSF57196
GLP2R	9340	genome.wustl.edu	37	17	9757861	9757861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004246.1	+1	reviewed	p.G185E	1.000	669	0%	425	28.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_2,superfamily_SSF111418
MYH8	4626	genome.wustl.edu	37	17	10299770	10299770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002472.2	-1	reviewed	p.Q1510H	1.000	162	0%	95	34.7%	0	-	benign(0.206)	deleterious(0)	neutral(0.465)	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10304018	10304018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002472.2	-1	reviewed	p.L1142I	1.000	271	0%	165	31.5%	0	-	possibly_damaging(0.929)	tolerated(0.05)	deleterious(0.722)	HMMPfam_Myosin_tail_1
MYH4	4622	genome.wustl.edu	37	17	10362582	10362582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.E525K	1.000	415	0%	221	10.9%	0	-	benign(0.33)	deleterious(0)	deleterious(0.548)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10399832	10399832	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.R1564H	1.000	481	0%	272	24.3%	0	-	benign(0.098)	deleterious(0.02)	neutral(0.391)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10408490	10408490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.V809M	1.000	344	0%	240	31.2%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10408617	10408617	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	e19-1	1.000	330	0%	198	24.7%	0	-	-	-	-	-
MYH1	4619	genome.wustl.edu	37	17	10409151	10409151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.L718F	0.997	204	0.5%	143	23.8%	0	-	benign(0.021)	deleterious(0.02)	neutral(0.384)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH1	4619	genome.wustl.edu	37	17	10419296	10419296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.A151V	1.000	438	0.2%	256	32.8%	0	-	probably_damaging(1)	tolerated(0.75)	deleterious(0.501)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10428592	10428595	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	TTTC	TTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.K1536fs	0.986:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10440805	10440805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.D548Y	1.000	277	0%	169	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10443245	10443245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.V383F	1.000	475	0.2%	299	30.4%	0	-	possibly_damaging(0.836)	deleterious(0.03)	deleterious(0.684)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10443319	10443319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.A358V	1.000	474	0%	294	26.9%	0	-	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10537414	10537414	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.E1481G	1.000	408	0%	200	27%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Myosin_tail_1
MYH3	4621	genome.wustl.edu	37	17	10551904	10551904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.K235N	1.000	269	0%	138	29.7%	0	-	possibly_damaging(0.856)	deleterious(0)	deleterious(0.775)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH3	4621	genome.wustl.edu	37	17	10558264	10558264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.V40M	1.000	215	0%	107	29.9%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Myosin_N
SCO1	6341	genome.wustl.edu	37	17	10595204	10595204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004589.2	-1	reviewed	p.A214T	1.000	156	0%	78	14.1%	70	18.5%	probably_damaging(0.965)	tolerated(0.29)	neutral(0.436)	HMMPfam_SCO1-SenC,superfamily_Thiordxn-like_fd
PIRT	644139	genome.wustl.edu	37	17	10728741	10728741	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101387.1	-1	validated	p.C74*	0.995	188	0%	92	22.8%	0	-	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11522934	11522934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.V396L	0.747	571	0%	294	24.8%	0	-	benign(0.002)	tolerated(0.47)	neutral(0.011)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11550474	11550474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.D686N	1.000	352	0%	190	13.2%	0	-	benign(0.01)	tolerated(0.21)	neutral(0.044)	HMMPfam_DHC_N1
DNAH9	1770	genome.wustl.edu	37	17	11572794	11572794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.Q1012	0.872	283	0%	159	25.2%	1	0%	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11645566	11645566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.A2016V	1.000	378	0%	225	22.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11648149	11648149	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.S2049	0.006	97	0%	71	28.2%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11711063	11711063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.R2812H	1.000	297	0.3%	143	11.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH9	1770	genome.wustl.edu	37	17	11725888	11725888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.R2995H	1.000	665	0%	381	24.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MIR744	100126313	genome.wustl.edu	37	17	11985276	11985276	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390234	+1	known	NULL	0.936	56	0%	37	27%	0	-	-	-	-	-
MAP2K4	6416	genome.wustl.edu	37	17	12016675	12016675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003010.2	+1	reviewed	p.A271T	1.000	242	0%	174	20.7%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
LOC100128006	100128006	genome.wustl.edu	37	17	12666975	12666975	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078523.1	-1	model	NULL	0.000	194	0%	93	29%	0	-	-	-	-	-
ARHGAP44	9912	genome.wustl.edu	37	17	12799790	12799790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014859.4	+1	validated	p.L54M	1.000	51	0%	30	30%	1	100%	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	HMMPfam_BAR,HMMSmart_BAR
PMP22	5376	genome.wustl.edu	37	17	15134242	15134242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000304.2	-1	reviewed	p.R159C	1.000	149	0%	71	26.8%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEKT3	64518	genome.wustl.edu	37	17	15207296	15207296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.R477H	1.000	117	0%	65	32.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
TEKT3	64518	genome.wustl.edu	37	17	15234745	15234745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.S53N	0.999	335	0%	202	30.7%	0	-	benign(0.006)	tolerated(0.36)	neutral(0.020)	NULL
CDRT1	374286	genome.wustl.edu	37	17	15492392	15492392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.S719L	1.000	80	0%	39	38.5%	4	0%	unknown(0)	deleterious(0.01)	-	NULL
CDRT1	374286	genome.wustl.edu	37	17	15508556	15508556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.S472G	1.000	306	0%	201	27.4%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CDRT1	374286	genome.wustl.edu	37	17	15517024	15517024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.A302T	0.006	280	0%	151	21.2%	0	-	unknown(0)	tolerated(0.21)	-	HMMPfam_F-box,superfamily_F-box domain
CDRT1	374286	genome.wustl.edu	37	17	15522386	15522386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006382.3	-1	provisional	p.K147N	0.000	348	0%	189	14.3%	0	-	benign(0.009)	tolerated(0.56)	neutral(0.007)	NULL
TBC1D26	353149	genome.wustl.edu	37	17	15644498	15644498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178571.4	+1	validated	p.E203D	0.902	81	0%	29	24.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
PIGL	9487	genome.wustl.edu	37	17	16120681	16120681	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004278.3	+1	reviewed	p.I47	0.969	69	0%	35	42.9%	6	33.3%	-	-	-	HMMPfam_PIG-L,superfamily_LmbE-like
TRPV2	51393	genome.wustl.edu	37	17	16329458	16329458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016113.3	+1	reviewed	p.L324I	1.000	97	0%	55	25.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ANK
RAI1	10743	genome.wustl.edu	37	17	17697345	17697345	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030665.3	+1	reviewed	p.S361	0.045	99	0%	54	31.5%	9	44.4%	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18062626	18062626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.S3065I	0.977	99	0%	50	16%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00139
LLGL1	3996	genome.wustl.edu	37	17	18145004	18145004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004140.3	+1	reviewed	p.S914	0.405	70	0%	29	20.7%	35	51.4%	-	-	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18670128	18670128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031456.3	+1	validated	p.R553*	0.997	159	0%	111	9.9%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MAPK7	5598	genome.wustl.edu	37	17	19284952	19284952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.A477D	0.992	58	0%	34	35.3%	19	57.8%	unknown(0)	deleterious(0)	-	NULL
MAPK7	5598	genome.wustl.edu	37	17	19285765	19285765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.L717I	1.000	96	0%	40	17.5%	17	35.2%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
ALDH3A2	224	genome.wustl.edu	37	17	19564573	19564573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031806.1	+1	reviewed	p.R311H	0.998	279	0%	177	11.9%	127	19.6%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ULK2	9706	genome.wustl.edu	37	17	19683922	19683922	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142610.1	-1	reviewed	p.R927*	1.000	77	1.3%	51	23.5%	7	0%	-	-	-	NULL
ULK2	9706	genome.wustl.edu	37	17	19684416	19684416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142610.1	-1	reviewed	p.R881W	1.000	90	0%	38	28.9%	5	20%	probably_damaging(0.993)	tolerated(0.08)	deleterious(0.750)	NULL
SPECC1	92521	genome.wustl.edu	37	17	20107885	20107885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033553.1	+1	validated	p.A175S	1.000	415	0%	233	31.3%	6	33.3%	possibly_damaging(0.934)	tolerated(0.11)	deleterious(0.651)	NULL
DHRS7B	25979	genome.wustl.edu	37	17	21081606	21081606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015510.3	+1	validated	p.G87V	0.986	96	0%	44	22.7%	55	43.6%	benign(0.03)	tolerated(0.2)	neutral(0.051)	HMMPfam_adh_short,superfamily_NAD(P)-bd
MAP2K3	5606	genome.wustl.edu	37	17	21201748	21201748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145109.2	+1	reviewed	p.L25I	0.849	186	0%	87	14.9%	26	0%	benign(0.039)	tolerated(0.1)	neutral(0.288)	NULL
MAP2K3	5606	genome.wustl.edu	37	17	21207808	21207808	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145109.2	+1	reviewed	p.G213	0.999	99	0%	47	10.6%	79	8.8%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WSB1	26118	genome.wustl.edu	37	17	25628822	25628822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015626.8	+1	reviewed	p.R17C	1.000	497	0%	315	29.5%	21	38%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_WD40 repeat-like
NLK	51701	genome.wustl.edu	37	17	26449732	26449732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016231.4	+1	validated	p.M188V	1.000	336	0%	253	27.3%	21	47.6%	possibly_damaging(0.546)	deleterious(0)	deleterious(0.630)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
IFT20	90410	genome.wustl.edu	37	17	26656253	26656253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174887.2	-1	provisional	p.S127R	1.000	360	0%	178	38.8%	67	41.7%	possibly_damaging(0.885)	tolerated(0.06)	deleterious(0.668)	NULL
TNFAIP1	7126	genome.wustl.edu	37	17	26666726	26666726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021137.4	+1	reviewed	p.R60H	1.000	52	0%	15	33.3%	24	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
SLC46A1	113235	genome.wustl.edu	37	17	26731650	26731650	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080669.3	-1	reviewed	p.T355	0.122	79	0%	30	16.7%	8	25%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
FOXN1	8456	genome.wustl.edu	37	17	26857783	26857783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003593.2	+1	reviewed	p.A283T	1.000	137	0%	75	22.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
SPAG5	10615	genome.wustl.edu	37	17	26906231	26906231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.Q1015H	1.000	327	0%	169	21.9%	33	48.4%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
SPAG5	10615	genome.wustl.edu	37	17	26911223	26911223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.Q786L	0.872	330	0%	192	34.4%	26	46.1%	benign(0.08)	tolerated(1)	neutral(0.005)	NULL
SPAG5	10615	genome.wustl.edu	37	17	26919147	26919147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.A372D	0.781	176	0%	110	11.8%	27	14.8%	possibly_damaging(0.508)	deleterious(0.01)	deleterious(0.576)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26942817	26942817	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	e38-1	1.000	111	0%	49	14.3%	0	-	-	-	-	-
KIAA0100	9703	genome.wustl.edu	37	17	26944249	26944249	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	e33+1	1.000	302	0%	153	23.5%	1	100%	-	-	-	-
KIAA0100	9703	genome.wustl.edu	37	17	26955283	26955283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	p.G1532C	1.000	194	0%	108	28.7%	64	6.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26959242	26959242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	p.R1274Q	1.000	440	0%	247	28.7%	64	65.6%	possibly_damaging(0.941)	tolerated(0.47)	neutral(0.398)	NULL
SUPT6H	6830	genome.wustl.edu	37	17	27014457	27014457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.L992M	1.000	120	0%	48	14.6%	57	15.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RPL23A	6147	genome.wustl.edu	37	17	27047818	27047818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000984.5	+1	reviewed	p.I40T	1.000	140	0%	70	24.3%	1263	43.5%	benign(0.018)	deleterious(0.03)	neutral(0.365)	HMMPfam_Ribosomal_L23eN
NEK8	284086	genome.wustl.edu	37	17	27065746	27065746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178170.2	+1	reviewed	p.S427N	1.000	61	0%	33	36.4%	4	50%	benign(0)	tolerated(1)	-	superfamily_RCC1/BLIP-II
ERAL1	26284	genome.wustl.edu	37	17	27186256	27186256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005702.2	+1	provisional	p.E382D	0.998	238	0%	133	28.6%	100	40%	possibly_damaging(0.948)	tolerated(0.49)	neutral(0.402)	superfamily_Prokaryotic type KH domain (KH-domain type II)
SEZ6	124925	genome.wustl.edu	37	17	27286891	27286891	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178860.4	-1	validated	p.C532*	1.000	43	0%	26	30.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SEZ6	124925	genome.wustl.edu	37	17	27309001	27309001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178860.4	-1	validated	p.T38A	0.017	39	0%	21	28.6%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
NUFIP2	57532	genome.wustl.edu	37	17	27613603	27613603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020772.2	-1	validated	p.S470N	1.000	194	0%	117	23.1%	30	43.3%	benign(0.095)	deleterious(0.02)	neutral(0.390)	NULL
TAOK1	57551	genome.wustl.edu	37	17	27844611	27844611	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020791.1	+1	validated	p.C615*	1.000	315	0.3%	220	31.4%	6	0%	-	-	-	superfamily_Protein kinase-like (PK-like)
TAOK1	57551	genome.wustl.edu	37	17	27849522	27849522	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020791.1	+1	validated	p.Q711	1.000	263	0%	142	29.6%	4	25%	-	-	-	superfamily_Protein kinase-like (PK-like)
GIT1	28964	genome.wustl.edu	37	17	27902340	27902340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.L668M	0.989	194	0.5%	84	16.7%	45	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GIT1	28964	genome.wustl.edu	37	17	27903131	27903131	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.I553L	0.500	36	0%	23	21.7%	43	4.6%	benign(0)	tolerated(1)	-	NULL
GIT1	28964	genome.wustl.edu	37	17	27903263	27903263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.T538M	0.000	33	0%	21	38.1%	58	44.8%	benign(0.061)	tolerated(0.17)	neutral(0.063)	NULL
GIT1	28964	genome.wustl.edu	37	17	27903619	27903619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085454.1	-1	validated	p.A443V	1.000	34	0%	12	33.3%	53	52.8%	benign(0.003)	tolerated(0.52)	neutral(0.009)	NULL
SSH2	85464	genome.wustl.edu	37	17	27963754	27963754	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.P471	0.988	403	0%	228	25.4%	5	80%	-	-	-	NULL
SLC6A4	6532	genome.wustl.edu	37	17	28539812	28539812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045.4	-1	reviewed	p.G384S	1.000	177	0%	93	19.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
CPD	1362	genome.wustl.edu	37	17	28772791	28772791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001304.3	+1	reviewed	p.D876Y	1.000	248	0.4%	180	12.8%	125	63.2%	possibly_damaging(0.46)	deleterious(0.04)	deleterious(0.500)	HMMSmart_Zn_pept
ATAD5	79915	genome.wustl.edu	37	17	29185222	29185222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.L946R	0.157	198	0%	126	33.3%	3	100%	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29219742	29219742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.A1459D	0.913	253	0%	158	29.1%	4	50%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
NF1	4763	genome.wustl.edu	37	17	29533378	29533378	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.R461*	1.000	410	0%	261	30.3%	2	50%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29663721	29663721	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.H2072	1.000	139	0%	67	23.9%	4	25%	-	-	-	NULL
NF1	4763	genome.wustl.edu	37	17	29670043	29670043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042492.2	+1	reviewed	p.F2360C	1.000	244	0%	136	33.1%	10	10%	possibly_damaging(0.7)	deleterious(0.01)	deleterious(0.657)	NULL
RAB11FIP4	84440	genome.wustl.edu	37	17	29849023	29849023	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032932.3	+1	validated	p.L283	1.000	62	0%	44	31.8%	24	41.6%	-	-	-	NULL
C17orf79	55352	genome.wustl.edu	37	17	30179200	30179200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018405.3	-1	validated	p.K171N	1.000	159	0%	103	34%	244	40.9%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
UTP6	55813	genome.wustl.edu	37	17	30226734	30226734	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018428.2	-1	validated	p.K36	1.000	126	0%	63	17.5%	29	34.4%	-	-	-	HMMPfam_U3_assoc_6
SUZ12	23512	genome.wustl.edu	37	17	30320906	30320906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015355.2	+1	reviewed	p.R439M	1.000	229	0%	134	35.1%	50	46%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RHBDL3	162494	genome.wustl.edu	37	17	30648200	30648200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431505	+1	known	p.H356Y	1.000	60	0%	40	25%	0	-	unknown(0)	-	-	NULL
PSMD11	5717	genome.wustl.edu	37	17	30796078	30796078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002815.2	+1	reviewed	p.Q170H	1.000	210	0%	128	19.5%	108	48.1%	benign(0.009)	tolerated(0.42)	neutral(0.015)	HMMSmart_SM00753,superfamily_TPR-like
CCL7	6354	genome.wustl.edu	37	17	32598794	32598794	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006273.2	+1	reviewed	p.D91	0.996	147	0%	113	39.8%	0	-	-	-	-	superfamily_Chemokine_IL8
TMEM132E	124842	genome.wustl.edu	37	17	32959784	32959784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207313.1	+1	provisional	p.A425V	1.000	241	0%	124	16.9%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	NULL
TMEM132E	124842	genome.wustl.edu	37	17	32964708	32964708	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207313.1	+1	provisional	p.L804	1.000	36	0%	21	23.8%	1	0%	-	-	-	NULL
LIG3	3980	genome.wustl.edu	37	17	33319550	33319550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013975.2	+1	reviewed	p.A432T	1.000	244	0%	155	32.3%	28	64.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DNA_ligase_A_N
LIG3	3980	genome.wustl.edu	37	17	33319629	33319629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013975.2	+1	reviewed	p.A458V	1.000	151	0.7%	90	24.4%	20	25%	benign(0.003)	tolerated(0.26)	neutral(0.034)	NULL
NLE1	54475	genome.wustl.edu	37	17	33463486	33463486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018096.3	-1	validated	p.G287S	0.666	197	0%	84	16.7%	20	5%	possibly_damaging(0.454)	tolerated(0.05)	deleterious(0.494)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SLC35G3	146861	genome.wustl.edu	37	17	33521123	33521123	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152462.2	-1	validated	p.P68	1.000	260	0%	110	27.3%	0	-	-	-	-	HMMPfam_DUF6
SLFN5	162394	genome.wustl.edu	37	17	33591267	33591267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144975.3	+1	validated	p.G402*	0.605	164	0%	82	31.7%	9	22.2%	-	-	-	NULL
SLFN5	162394	genome.wustl.edu	37	17	33592466	33592466	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144975.3	+1	validated	p.L745	0.000	204	0%	118	30.5%	14	35.7%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33680414	33680414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.H621Q	0.000	431	0%	232	20.7%	0	-	possibly_damaging(0.855)	tolerated(0.08)	deleterious(0.630)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN11	91607	genome.wustl.edu	37	17	33689903	33689903	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.L308	0.185	369	0%	253	28.1%	1	0%	-	-	-	HMMPfam_AAA_4
SLFN13	146857	genome.wustl.edu	37	17	33772694	33772694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144682.5	-1	validated	p.E2D	0.392	207	0%	98	30.6%	0	-	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	NULL
AP2B1	163	genome.wustl.edu	37	17	33951593	33951593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030006.1	+1	reviewed	p.R235W	1.000	250	0%	164	25.6%	100	43%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Adaptin_N,superfamily_ARM repeat
TAF15	8148	genome.wustl.edu	37	17	34171358	34171358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139215.1	+1	reviewed	p.R388H	0.999	214	0.5%	126	11.1%	63	17.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Znf265 first zinc-finger domain
RDM1	201299	genome.wustl.edu	37	17	34252565	34252565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145654.3	-1	reviewed	p.A118V	0.999	195	0.5%	114	10.5%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_dsRNA-binding domain-like
GGNBP2	79893	genome.wustl.edu	37	17	34937901	34937901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024835.2	+1	validated	p.N383S	1.000	284	0%	153	10.5%	53	0%	possibly_damaging(0.903)	tolerated(0.2)	neutral(0.407)	NULL
AATF	26574	genome.wustl.edu	37	17	35311167	35311167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012138.3	+1	reviewed	p.K264N	1.000	306	0%	178	23.6%	53	41.5%	possibly_damaging(0.62)	deleterious(0.05)	deleterious(0.561)	NULL
AATF	26574	genome.wustl.edu	37	17	35343919	35343919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012138.3	+1	reviewed	p.H279R	1.000	323	0.3%	187	24.6%	54	48.1%	benign(0.004)	tolerated(0.42)	neutral(0.014)	NULL
ACACA	31	genome.wustl.edu	37	17	35518824	35518824	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.S1740	1.000	1143	0%	641	29.3%	16	81.2%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
ACACA	31	genome.wustl.edu	37	17	35603865	35603865	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.T779	1.000	239	0%	164	29.3%	8	12.5%	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35631151	35631151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.R314H	1.000	300	0%	187	31.6%	5	0%	benign(0.051)	tolerated(0.14)	neutral(0.253)	superfamily_SSF56059
DDX52	11056	genome.wustl.edu	37	17	35986018	35986018	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007010.2	-1	validated	p.S353	1.000	178	0%	104	36.5%	28	35.7%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR179	440435	genome.wustl.edu	37	17	36483965	36483965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004334.2	-1	validated	p.K1829N	0.001	480	0.2%	254	24%	0	-	possibly_damaging(0.885)	deleterious(0.02)	deleterious(0.729)	NULL
MLLT6	4302	genome.wustl.edu	37	17	36876024	36876024	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005937.3	+1	validated	p.P677	0.020	22	0%	10	60%	43	46.5%	-	-	-	NULL
PIP4K2B	8396	genome.wustl.edu	37	17	36927432	36927432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003559.4	-1	reviewed	p.R301W	1.000	106	0%	67	28.4%	14	35.7%	possibly_damaging(0.909)	deleterious(0.02)	deleterious(0.745)	HMMPfam_PIP5K,HMMSmart_SM00330,superfamily_SAICAR synthase-like
LASP1	3927	genome.wustl.edu	37	17	37074861	37074861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006148.2	+1	validated	p.R206W	1.000	109	0%	57	17.5%	53	11.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
FBXO47	494188	genome.wustl.edu	37	17	37118141	37118141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008777.2	-1	validated	p.Y114C	1.000	221	0%	138	18.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FLJ43826	342666	genome.wustl.edu	37	17	37187728	37187728	+	RNA	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040620.2	+1	model	NULL	0.000	606	0.2%	349	31.2%	0	-	-	-	-	-
FLJ43826	342666	genome.wustl.edu	37	17	37188512	37188512	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040620.2	+1	model	NULL	0.000	305	0%	171	35.1%	0	-	-	-	-	-
MED1	5469	genome.wustl.edu	37	17	37566690	37566690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004774.3	-1	reviewed	p.F595S	1.000	231	0%	137	31.4%	13	23%	unknown(0)	deleterious(0)	-	NULL
MED1	5469	genome.wustl.edu	37	17	37571368	37571368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004774.3	-1	reviewed	p.Q470H	0.993	431	0%	295	27.8%	16	43.7%	unknown(0)	tolerated(0.08)	-	NULL
CDK12	51755	genome.wustl.edu	37	17	37618487	37618487	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016507.2	+1	validated	p.L55	0.024	113	0%	61	21.3%	9	22.2%	-	-	-	NULL
PGAP3	93210	genome.wustl.edu	37	17	37842253	37842253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033419.3	-1	validated	p.D67E	1.000	102	0%	51	45.1%	9	77.7%	benign(0.053)	tolerated(1)	neutral(0.004)	HMMPfam_Per1
IKZF3	22806	genome.wustl.edu	37	17	37922199	37922199	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439016	-1	known	p.A412V	0.806	218	0.5%	109	27.5%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PSMD3	5709	genome.wustl.edu	37	17	38142880	38142880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	p.A155V	0.998	405	0%	223	31.8%	124	72.5%	possibly_damaging(0.591)	tolerated(0.13)	neutral(0.457)	superfamily_TPR-like
PSMD3	5709	genome.wustl.edu	37	17	38151782	38151782	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	e9+2	1.000	52	0%	29	24.1%	5	80%	-	-	-	-
MED24	9862	genome.wustl.edu	37	17	38191472	38191472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014815.3	-1	reviewed	p.A153T	0.000	85	0%	38	23.7%	48	45.8%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
MED24	9862	genome.wustl.edu	37	17	38209615	38209615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014815.3	-1	reviewed	p.A50V	1.000	423	0%	319	31.7%	73	46.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
THRA	7067	genome.wustl.edu	37	17	38244516	38244516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003250.4	+1	reviewed	p.I249V	1.000	157	0%	109	22%	34	32.3%	benign(0)	tolerated(0.28)	neutral(0.032)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
TOP2A	7153	genome.wustl.edu	37	17	38552631	38552631	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001067.2	-1	reviewed	p.A1208	0.824	206	0%	131	26.7%	35	60%	-	-	-	NULL
IGFBP4	3487	genome.wustl.edu	37	17	38612770	38612770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001552.2	+1	reviewed	p.P238S	1.000	45	0%	25	28%	38	10.5%	benign(0.091)	tolerated(0.24)	neutral(0.044)	HMMPfam_Thyroglobulin_1,HMMSmart_TY,superfamily_Thyroglobulin_1
TNS4	84951	genome.wustl.edu	37	17	38633949	38633949	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032865.5	-1	validated	p.E680A	0.046	247	0%	127	27.6%	6	33.3%	possibly_damaging(0.737)	tolerated(0.11)	deleterious(0.541)	HMMPfam_PTB,superfamily_SSF50729
CCR7	1236	genome.wustl.edu	37	17	38712013	38712013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001838.2	-1	reviewed	p.D40N	1.000	336	0%	172	30.2%	0	-	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	superfamily_Family A G protein-coupled receptor-like
SMARCE1	6605	genome.wustl.edu	37	17	38785067	38785067	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003079.4	-1	reviewed	p.D402	0.653	401	0%	258	25.6%	90	45.5%	-	-	-	NULL
KRT25	147183	genome.wustl.edu	37	17	38906651	38906651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181534.3	-1	reviewed	p.L386I	1.000	604	0.2%	324	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39081761	39081761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015515.3	-1	reviewed	p.M329I	1.000	133	0%	56	10.7%	52	7.6%	benign(0.012)	tolerated(1)	neutral(0.001)	HMMPfam_Filament
KRT39	390792	genome.wustl.edu	37	17	39119934	39119934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213656.3	-1	reviewed	p.A218V	0.409	397	0%	205	26.8%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	HMMPfam_Filament
KRT40	125115	genome.wustl.edu	37	17	39135219	39135219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182497.3	-1	reviewed	p.A345T	1.000	260	0%	105	31.4%	1	0%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_Filament
KRTAP3-2	83897	genome.wustl.edu	37	17	39155947	39155947	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031959.2	-1	reviewed	p.P53	1.000	120	0%	110	18.2%	0	-	-	-	-	HMMPfam_Keratin_matx
KRTAP1-3	81850	genome.wustl.edu	37	17	39190716	39190716	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030966.1	-1	reviewed	p.L120	0.999	100	0%	51	43.1%	0	-	-	-	-	HMMPfam_Keratin_B2
KRTAP4-1	85285	genome.wustl.edu	37	17	39340717	39340717	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033060.2	-1	reviewed	p.T111	0.992	149	0%	90	34.4%	0	-	-	-	-	HMMPfam_Keratin_B2
KRT33A	3883	genome.wustl.edu	37	17	39506870	39506870	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004138.2	-1	reviewed	p.G50	1.000	144	0%	83	24.1%	0	-	-	-	-	NULL
KRT32	3882	genome.wustl.edu	37	17	39619163	39619163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.Y379C	1.000	109	0%	65	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT13	3860	genome.wustl.edu	37	17	39661616	39661616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153490.2	-1	reviewed	p.G63C	0.968	165	0%	81	30.9%	0	-	unknown(0)	tolerated(0.22)	-	NULL
JUP	3728	genome.wustl.edu	37	17	39912451	39912451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.P688S	1.000	60	0%	36	52.8%	456	43.6%	possibly_damaging(0.945)	tolerated(0.51)	neutral(0.399)	NULL
JUP	3728	genome.wustl.edu	37	17	39919433	39919433	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.S433	0.540	67	1.5%	36	30.6%	338	44%	-	-	-	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
JUP	3728	genome.wustl.edu	37	17	39923762	39923762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002230.2	-1	reviewed	p.A260T	0.999	87	0%	31	32.3%	391	43.4%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	HMMSmart_ARM,superfamily_ARM-type_fold
NT5C3L	115024	genome.wustl.edu	37	17	39983784	39983784	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052935.4	-1	validated	p.G213D	0.032	203	0%	86	36%	83	38.5%	benign(0.167)	tolerated(1)	neutral(0.015)	HMMPfam_UMPH-1,superfamily_HAD-like
KLHL10	317719	genome.wustl.edu	37	17	39998481	39998481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152467.3	+1	validated	p.D201Y	1.000	165	0%	79	30.4%	0	-	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	HMMPfam_BACK
CNP	1267	genome.wustl.edu	37	17	40124026	40124026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033133.4	+1	validated	p.A265T	1.000	71	0%	24	25%	88	21.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_CNPase,superfamily_LigT-like
ENSG00000247918	0	genome.wustl.edu	37	17	40125992	40125992	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499234	-1	novel	NULL	0.009	37	0%	22	36.4%	54	40.7%	-	-	-	-
DHX58	79132	genome.wustl.edu	37	17	40257048	40257048	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024119.2	-1	validated	p.I463	1.000	74	0%	29	41.4%	7	28.5%	-	-	-	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
KCNH4	23415	genome.wustl.edu	37	17	40321495	40321495	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012285.2	-1	reviewed	p.E530	1.000	39	0%	22	18.2%	0	-	-	-	-	superfamily_cNMP_binding
KCNH4	23415	genome.wustl.edu	37	17	40322175	40322175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012285.2	-1	reviewed	p.A447V	1.000	43	0%	34	38.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ion_trans,superfamily_SSF81324
STAT5A	6776	genome.wustl.edu	37	17	40459723	40459723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003152.3	+1	reviewed	p.A630T	1.000	95	0%	52	13.5%	23	13%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
STAT3	6774	genome.wustl.edu	37	17	40476842	40476842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139276.2	-1	reviewed	p.P496L	1.000	81	0%	44	31.8%	63	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
LOC100287926	100287926	genome.wustl.edu	37	17	40716673	40716673	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343560.1	-1	model	p.P2	0.000	132	0%	49	30.6%	0	-	-	-	-	NULL
COASY	80347	genome.wustl.edu	37	17	40717751	40717751	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042532.2	+1	validated	p.S549	0.858	73	0%	23	30.4%	62	25.8%	-	-	-	HMMPfam_CoaE,superfamily_SSF52540
MLX	6945	genome.wustl.edu	37	17	40721376	40721376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432824	+1	known	p.A114D	0.001	89	0%	36	36.1%	2	0%	-	-	-	NULL
CNTNAP1	8506	genome.wustl.edu	37	17	40839026	40839026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003632.2	+1	reviewed	p.D336Y	0.994	39	0%	18	55.6%	5	20%	benign(0.002)	deleterious(0)	neutral(0.445)	NULL
RAMP2	10266	genome.wustl.edu	37	17	40914633	40914633	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005854.2	+1	reviewed	p.R97	0.000	156	0%	100	24%	28	3.5%	-	-	-	HMMPfam_RAMP
WNK4	65266	genome.wustl.edu	37	17	40947667	40947667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.R1016H	1.000	233	0.4%	108	36.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WNK4	65266	genome.wustl.edu	37	17	40947885	40947885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.D1089Y	0.205	97	0%	47	10.6%	2	50%	unknown(0)	-	-	NULL
AOC2	314	genome.wustl.edu	37	17	40997575	40997575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_009590.2	+1	reviewed	p.S311L	0.638	310	0%	116	25.9%	4	25%	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
AOC3	8639	genome.wustl.edu	37	17	41003377	41003377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003734.2	+1	reviewed	p.I6T	0.759	320	0%	136	27.9%	4	0%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
AOC3	8639	genome.wustl.edu	37	17	41004133	41004133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003734.2	+1	reviewed	p.R258H	0.000	123	0%	42	26.2%	1	0%	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMPfam_Cu_amine_oxidN3,superfamily_Cu_amine_oxidase_N-reg
AOC3	8639	genome.wustl.edu	37	17	41004822	41004822	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003734.2	+1	reviewed	p.R488*	0.811	161	0%	73	28.8%	5	20%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_CuNH_oxidase
BRCA1	672	genome.wustl.edu	37	17	41245828	41245828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.L574I	0.006	300	0.3%	190	27.4%	5	60%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
BRCA1	672	genome.wustl.edu	37	17	41258540	41258540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.L49M	1.000	118	0%	64	15.6%	7	57.1%	possibly_damaging(0.873)	tolerated(0.13)	deleterious(0.592)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
NBR2	10230	genome.wustl.edu	37	17	41290805	41290805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356906	+1	known	p.R17C	0.022	157	0%	88	33%	10	0%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
NBR1	4077	genome.wustl.edu	37	17	41341820	41341820	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005899.3	+1	reviewed	e7+1	1.000	312	0%	200	11.5%	0	-	-	-	-	-
NBR1	4077	genome.wustl.edu	37	17	41343476	41343476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005899.3	+1	reviewed	p.K317N	1.000	94	0%	67	29.9%	47	27.6%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NBR1	4077	genome.wustl.edu	37	17	41348511	41348511	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005899.3	+1	reviewed	p.C588	1.000	52	0%	21	33.3%	39	53.8%	-	-	-	NULL
DHX8	1659	genome.wustl.edu	37	17	41599550	41599550	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004941.1	+1	reviewed	p.V1133	1.000	126	0.8%	75	28%	33	39.3%	-	-	-	HMMPfam_DUF1605
ETV4	2118	genome.wustl.edu	37	17	41610212	41610212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079675.1	-1	validated	p.S214L	0.996	80	0%	41	39%	13	15.3%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	HMMPfam_ETS_PEA3_N
SOST	50964	genome.wustl.edu	37	17	41835938	41835938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025237.2	-1	reviewed	p.R58W	1.000	53	0%	22	27.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sclerostin
MPP3	4356	genome.wustl.edu	37	17	41891443	41891443	+	Silent	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001932.3	-1	reviewed	p.R397	0.947	212	0%	77	26%	2	0%	-	-	-	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP2	4355	genome.wustl.edu	37	17	41957316	41957316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005374.3	-1	reviewed	p.G396D	1.000	130	0%	62	33.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP2	4355	genome.wustl.edu	37	17	41959836	41959836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005374.3	-1	reviewed	p.R166H	1.000	99	0%	37	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TMUB2	79089	genome.wustl.edu	37	17	42266576	42266576	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076674.1	+1	validated	p.G74	0.008	84	0%	47	29.8%	29	37.9%	-	-	-	NULL
TMUB2	79089	genome.wustl.edu	37	17	42267919	42267919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076674.1	+1	validated	p.R218H	1.000	99	0%	71	38%	50	40%	benign(0.316)	deleterious(0.01)	deleterious(0.505)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
RUNDC3A	10900	genome.wustl.edu	37	17	42390789	42390789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144825.1	+1	validated	p.R126W	1.000	113	0.9%	47	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RUN,HMMSmart_SM00593
ITGA2B	3674	genome.wustl.edu	37	17	42455115	42455115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000419.3	-1	reviewed	p.T713I	0.992	97	0%	49	22.4%	0	-	benign(0.119)	deleterious(0)	neutral(0.454)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
GPATCH8	23131	genome.wustl.edu	37	17	42512487	42512487	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.R98	0.956	217	0%	122	25.4%	13	46.1%	-	-	-	NULL
FZD2	2535	genome.wustl.edu	37	17	42635698	42635698	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.K214	1.000	21	0%	27	37%	8	50%	-	-	-	NULL
FZD2	2535	genome.wustl.edu	37	17	42635871	42635871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.R272H	1.000	66	0%	41	46.3%	19	52.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
FZD2	2535	genome.wustl.edu	37	17	42636530	42636530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001466.2	+1	reviewed	p.R492C	1.000	34	0%	15	26.7%	14	7.1%	possibly_damaging(0.836)	tolerated(0.18)	neutral(0.376)	HMMPfam_Frizzled
EFTUD2	9343	genome.wustl.edu	37	17	42930970	42930970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004247.3	-1	validated	p.A794E	1.000	158	0%	95	24.2%	66	37.8%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_EFG_IV,superfamily_Ribosomal_S5_D2-typ_fold
CCDC103	388389	genome.wustl.edu	37	17	42978971	42978971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213607.1	+1	provisional	p.H76R	0.910	169	0%	64	34.4%	11	36.3%	probably_damaging(0.983)	tolerated(0.35)	neutral(0.450)	NULL
KIF18B	146909	genome.wustl.edu	37	17	43013628	43013628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080443.1	-1	provisional	p.V29L	1.000	18	0%	12	33.3%	4	25%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
DCAKD	79877	genome.wustl.edu	37	17	43111727	43111727	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128631.1	-1	validated	p.R48	1.000	56	0%	22	22.7%	63	33.3%	-	-	-	HMMPfam_CoaE,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACBD4	79777	genome.wustl.edu	37	17	43214119	43214119	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135704.1	+1	reviewed	p.T90	0.199	32	0%	13	30.8%	4	50%	-	-	-	HMMPfam_ACBP,superfamily_ACBP
FMNL1	752	genome.wustl.edu	37	17	43316399	43316399	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005892.3	+1	reviewed	p.E349	1.000	198	0%	104	28.8%	13	30.7%	-	-	-	HMMPfam_Drf_FH3
FMNL1	752	genome.wustl.edu	37	17	43322241	43322241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005892.3	+1	reviewed	p.G858D	1.000	148	0.7%	48	29.2%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
PLEKHM1	9842	genome.wustl.edu	37	17	43530966	43530966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014798.2	-1	reviewed	p.A751D	0.999	119	0%	66	9.1%	7	0%	probably_damaging(0.956)	deleterious(0.04)	deleterious(0.748)	HMMSmart_PH,superfamily_SSF50729
PLEKHM1	9842	genome.wustl.edu	37	17	43555378	43555378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014798.2	-1	reviewed	p.L62M	1.000	90	0%	53	17%	9	11.1%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_RUN
CRHR1	1394	genome.wustl.edu	37	17	43898751	43898751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145146.1	+1	reviewed	p.G91V	1.000	49	0%	31	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HRM,HMMSmart_SM00008,superfamily_Hormone receptor domain (HRM Pfam 02793)
SPPL2C	162540	genome.wustl.edu	37	17	43922346	43922346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175882.2	+1	validated	p.G25D	0.888	72	0%	36	38.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MAPT	4137	genome.wustl.edu	37	17	44073819	44073819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123066.3	+1	validated	p.G539V	0.998	33	0%	16	25%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44172021	44172021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.V446I	1.000	655	0%	384	20.6%	18	11.1%	benign(0.3)	tolerated(0.63)	neutral(0.097)	NULL
CDC27	996	genome.wustl.edu	37	17	45234337	45234337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114091.1	-1	reviewed	p.P262S	1.000	231	0%	144	12.5%	25	12%	benign(0.004)	tolerated(0.32)	neutral(0.024)	superfamily_TPR-like
ITGB3	3690	genome.wustl.edu	37	17	45369605	45369605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000212.2	+1	reviewed	p.Q454P	0.769	154	0%	73	20.5%	1	0%	benign(0.151)	tolerated(0.27)	neutral(0.047)	HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_Integrin domains
NPEPPS	9520	genome.wustl.edu	37	17	45673758	45673758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006310.3	+1	reviewed	p.P489L	1.000	31	0%	21	23.8%	56	48.2%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_SSF55486
KPNB1	3837	genome.wustl.edu	37	17	45755698	45755698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.L758M	1.000	298	0%	182	13.7%	213	17.3%	possibly_damaging(0.952)	deleterious(0.03)	deleterious(0.760)	superfamily_ARM repeat
TBKBP1	9755	genome.wustl.edu	37	17	45776131	45776131	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014726.2	+1	validated	p.G208	0.881	54	0%	26	30.8%	6	50%	-	-	-	NULL
OSBPL7	114881	genome.wustl.edu	37	17	45885948	45885948	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145798.2	-1	reviewed	p.K792N	0.071	567	0.4%	282	25.9%	4	25%	benign(0.196)	deleterious(0.01)	neutral(0.424)	HMMPfam_Oxysterol_BP
OSBPL7	114881	genome.wustl.edu	37	17	45894147	45894147	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145798.2	-1	reviewed	p.R265Q	1.000	61	0%	38	28.9%	4	75%	possibly_damaging(0.795)	tolerated(0.84)	neutral(0.299)	NULL
SP2	6668	genome.wustl.edu	37	17	45994392	45994392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003110.5	+1	reviewed	p.Q319*	1.000	218	0%	105	27.6%	7	28.5%	-	-	-	NULL
SP2	6668	genome.wustl.edu	37	17	45994489	45994489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003110.5	+1	reviewed	p.P351H	1.000	383	0%	229	10.9%	14	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CDK5RAP3	80279	genome.wustl.edu	37	17	46051354	46051354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176096.1	+1	reviewed	p.S81F	1.000	138	0%	74	32.4%	50	54%	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	HMMPfam_DUF773
LOC100288639	100288639	genome.wustl.edu	37	17	46058902	46058902	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343526.1	-1	model	p.S43	0.046	213	0%	111	28.8%	41	36.5%	-	-	-	NULL
HOXB1	3211	genome.wustl.edu	37	17	46607946	46607946	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002144.3	-1	reviewed	p.D107	0.017	169	0%	100	23%	0	-	-	-	-	NULL
HOXB1	3211	genome.wustl.edu	37	17	46608128	46608128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002144.3	-1	reviewed	p.R47S	0.999	76	0%	35	31.4%	0	-	possibly_damaging(0.934)	deleterious(0.01)	deleterious(0.786)	NULL
TTLL6	284076	genome.wustl.edu	37	17	46847316	46847316	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130918.1	-1	validated	p.K728	0.000	209	0%	101	35.6%	0	-	-	-	-	NULL
ATP5G1	516	genome.wustl.edu	37	17	46973087	46973087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002027.1	+1	reviewed	p.L123F	1.000	255	0%	158	24.7%	175	31.4%	benign(0.398)	deleterious(0.02)	deleterious(0.511)	HMMPfam_ATP-synt_C,superfamily_F1F0 ATP synthase subunit C
SLC35B1	10237	genome.wustl.edu	37	17	47782485	47782485	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005827.1	-1	provisional	e5+1	1.000	224	0%	131	25.2%	1	100%	-	-	-	-
ITGA3	3675	genome.wustl.edu	37	17	48151309	48151309	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005501.2	+1	reviewed	p.L396V	0.947	79	1.3%	51	27.5%	6	0%	benign(0.311)	tolerated(0.31)	neutral(0.124)	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain
ITGA3	3675	genome.wustl.edu	37	17	48166496	48166496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005501.2	+1	reviewed	p.R1023H	0.029	284	0%	181	32%	8	50%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
PDK2	5164	genome.wustl.edu	37	17	48184232	48184232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002611.3	+1	provisional	p.S198P	0.994	197	0%	97	24.7%	8	0%	possibly_damaging(0.558)	tolerated(0.28)	neutral(0.222)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SAMD14	201191	genome.wustl.edu	37	17	48191746	48191746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174920.2	-1	provisional	p.D294G	0.000	81	0%	35	28.6%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
SGCA	6442	genome.wustl.edu	37	17	48247657	48247657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000023.2	+1	reviewed	p.A301T	1.000	71	0%	32	31.2%	1	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Sarcoglycan_2
COL1A1	1277	genome.wustl.edu	37	17	48266595	48266595	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000088.3	-1	reviewed	p.Q957	1.000	40	0%	16	25%	370	1.3%	-	-	-	HMMPfam_Collagen
LOC100288444	100288444	genome.wustl.edu	37	17	48431506	48431506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343567.1	-1	model	p.A11T	0.004	22	0%	13	30.8%	0	-	-	-	-	NULL
CHAD	1101	genome.wustl.edu	37	17	48545654	48545654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001267.2	-1	reviewed	p.R174H	1.000	85	0%	38	15.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ACSF2	80221	genome.wustl.edu	37	17	48551590	48551590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025149.4	+1	validated	p.V587M	1.000	383	0%	168	28.6%	5	20%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_SSF56801
RSAD1	55316	genome.wustl.edu	37	17	48557329	48557329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018346.1	+1	provisional	p.A120S	0.000	35	0%	19	31.6%	7	42.8%	benign(0.001)	tolerated(0.17)	neutral(0.059)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
RSAD1	55316	genome.wustl.edu	37	17	48557425	48557425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018346.1	+1	provisional	p.R152G	1.000	51	0%	36	16.7%	30	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
CACNA1G	8913	genome.wustl.edu	37	17	48695471	48695471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.E1763D	1.000	51	0%	23	26.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ABCC3	8714	genome.wustl.edu	37	17	48752731	48752731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003786.3	+1	reviewed	p.G870C	0.000	179	0%	85	23.5%	3	0%	benign(0.414)	deleterious(0.04)	deleterious(0.483)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCC3	8714	genome.wustl.edu	37	17	48765056	48765056	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003786.3	+1	reviewed	p.I1480	1.000	114	0%	61	32.8%	6	0%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TOB1	10140	genome.wustl.edu	37	17	48940968	48940968	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005749.2	-1	reviewed	p.Q137H	1.000	128	0%	90	31.1%	206	44.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
TOB1	10140	genome.wustl.edu	37	17	48940973	48940973	+	Missense_Mutation	SNP	C	C	T	rs187704502	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005749.2	-1	reviewed	p.A136T	1.000	125	0%	90	24.4%	198	40.4%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
SPAG9	9043	genome.wustl.edu	37	17	49059961	49059961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130528.2	-1	reviewed	p.T1054N	1.000	849	0%	587	25.2%	36	55.5%	possibly_damaging(0.666)	deleterious(0.05)	deleterious(0.581)	superfamily_WD40 repeat-like
KIF2B	84643	genome.wustl.edu	37	17	51900439	51900439	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032559.4	+1	validated	p.P15	0.002	139	0%	61	19.7%	0	-	-	-	-	NULL
STXBP4	252983	genome.wustl.edu	37	17	53155490	53155490	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178509.5	+1	validated	p.R414*	1.000	300	0%	276	28.3%	1	0%	-	-	-	NULL
ANKFN1	162282	genome.wustl.edu	37	17	54534320	54534320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.R439W	1.000	213	0%	137	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NOG	9241	genome.wustl.edu	37	17	54671743	54671743	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005450.4	+1	reviewed	p.I53	1.000	38	0%	19	21.1%	7	57.1%	-	-	-	HMMPfam_Noggin,superfamily_SSF57501
TRIM25	7706	genome.wustl.edu	37	17	54985913	54985913	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005082.4	-1	reviewed	p.R203	0.474	180	1.1%	110	23.6%	29	27.5%	-	-	-	NULL
MRPS23	51649	genome.wustl.edu	37	17	55926649	55926649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016070.2	-1	reviewed	p.A56D	0.999	68	0%	42	33.3%	108	37%	benign(0.137)	tolerated(0.57)	neutral(0.018)	HMMPfam_MRP-S23
CUEDC1	404093	genome.wustl.edu	37	17	55962727	55962727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017949.1	-1	provisional	p.E67K	1.000	31	0%	22	27.3%	120	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUE,HMMSmart_SM00546,superfamily_UBA-like
OR4D2	124538	genome.wustl.edu	37	17	56247526	56247526	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004707.3	+1	provisional	p.G170	1.000	494	0.2%	282	25.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR4D2	124538	genome.wustl.edu	37	17	56247846	56247846	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004707.3	+1	provisional	p.V277D	0.706	577	0%	315	25.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D2	124538	genome.wustl.edu	37	17	56247851	56247851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004707.3	+1	provisional	p.T279A	1.000	566	0%	305	26.6%	0	-	possibly_damaging(0.579)	deleterious(0.04)	deleterious(0.548)	HMMPfam_7tm_1,superfamily_SSF81321
EPX	8288	genome.wustl.edu	37	17	56276965	56276965	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.G449	0.000	90	0%	43	18.6%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
RNF43	54894	genome.wustl.edu	37	17	56437556	56437556	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017763.4	-1	validated	p.W302fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
RNF43	54894	genome.wustl.edu	37	17	56440758	56440758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017763.4	-1	validated	p.P154S	1.000	279	0.7%	144	28.5%	13	69.2%	possibly_damaging(0.951)	deleterious(0.03)	deleterious(0.758)	NULL
MTMR4	9110	genome.wustl.edu	37	17	56572904	56572904	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004687.4	-1	validated	p.G867*	1.000	190	0%	101	12.9%	13	0%	-	-	-	NULL
TEX14	56155	genome.wustl.edu	37	17	56679906	56679906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198393.2	-1	reviewed	p.A461V	0.132	129	0%	68	29.4%	0	-	benign(0.029)	tolerated(0.18)	neutral(0.058)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
PPM1E	22843	genome.wustl.edu	37	17	57057337	57057337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014906.3	+1	reviewed	p.D405N	1.000	138	0.7%	69	23.2%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
TRIM37	4591	genome.wustl.edu	37	17	57094714	57094714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005207.2	-1	reviewed	p.A777S	1.000	324	0.3%	218	11.5%	36	16.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
DHX40	79665	genome.wustl.edu	37	17	57647950	57647950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024612.4	+1	reviewed	p.V118L	1.000	259	0%	171	29.2%	23	34.7%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHX40	79665	genome.wustl.edu	37	17	57665337	57665337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024612.4	+1	reviewed	p.A502V	1.000	461	0%	233	32.2%	43	44.1%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPS6KB1	6198	genome.wustl.edu	37	17	58013875	58013875	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003161.2	+1	reviewed	p.K364	1.000	1110	0%	698	29.1%	16	43.7%	-	-	-	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like)
ENSG00000238283	0	genome.wustl.edu	37	17	58087989	58087989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000407042	-1	known	p.L285M	1.000	244	0%	128	14.1%	0	-	-	-	-	HMMPfam_TBC
HEATR6	63897	genome.wustl.edu	37	17	58134497	58134497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.P664L	1.000	283	0%	178	21.3%	14	35.7%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	superfamily_ARM-type_fold
HEATR6	63897	genome.wustl.edu	37	17	58143636	58143636	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.T450	0.796	120	0%	82	20.7%	7	14.2%	-	-	-	superfamily_ARM-type_fold
HEATR6	63897	genome.wustl.edu	37	17	58150556	58150556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.A185T	1.000	122	0%	70	30%	5	40%	unknown(0)	deleterious(0)	-	superfamily_ARM-type_fold
USP32	84669	genome.wustl.edu	37	17	58258710	58258710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032582.3	-1	validated	p.P1508L	1.000	261	0%	165	27.3%	18	44.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_UCH,superfamily_SSF54001
APPBP2	10513	genome.wustl.edu	37	17	58571896	58571896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006380.2	-1	reviewed	p.R104W	1.000	309	0.3%	209	27.3%	21	42.8%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
PPM1D	8493	genome.wustl.edu	37	17	58740709	58740709	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.L538	0.993	251	0%	171	37.4%	17	41.1%	-	-	-	NULL
BCAS3	54828	genome.wustl.edu	37	17	59093163	59093163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099432.1	+1	validated	p.G513D	1.000	965	0.1%	627	30.8%	12	16.6%	probably_damaging(0.977)	tolerated(0.09)	deleterious(0.716)	NULL
BRIP1	83990	genome.wustl.edu	37	17	59885994	59885994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.R251H	1.000	222	0%	179	28.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
INTS2	57508	genome.wustl.edu	37	17	59968900	59968900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020748.2	-1	validated	p.L625F	1.000	442	0%	275	10.5%	3	0%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	NULL
INTS2	57508	genome.wustl.edu	37	17	60002360	60002360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020748.2	-1	validated	p.R140C	1.000	113	0%	57	12.3%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MED13	9969	genome.wustl.edu	37	17	60042540	60042540	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.S1557	0.966	231	0.9%	141	35.5%	18	11.1%	-	-	-	HMMPfam_TRAP_240kDa
MED13	9969	genome.wustl.edu	37	17	60061638	60061638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.L928M	0.999	276	0%	155	25.8%	13	61.5%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
MED13	9969	genome.wustl.edu	37	17	60088188	60088188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005121.2	-1	reviewed	p.P564T	1.000	258	0%	160	29.4%	9	33.3%	possibly_damaging(0.903)	tolerated(0.34)	neutral(0.381)	NULL
METTL2A	339175	genome.wustl.edu	37	17	60526000	60526000	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181725.3	+1	validated	p.R349	0.933	308	0%	161	26.1%	48	45.8%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MARCH10	162333	genome.wustl.edu	37	17	60813930	60813930	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100875.1	-1	validated	p.T433	0.004	540	0%	337	28.2%	0	-	-	-	-	NULL
LOC342541	342541	genome.wustl.edu	37	17	61549108	61549108	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_292596.4	+1	model	p.S53	0.988	311	0%	201	10.9%	0	-	-	-	-	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like
ACE	1636	genome.wustl.edu	37	17	61571015	61571015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000789.2	+1	reviewed	p.S1044I	0.370	58	0%	31	32.3%	17	17.6%	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNH6	81033	genome.wustl.edu	37	17	61620994	61620994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030779.2	+1	reviewed	p.G736C	0.646	35	0%	15	33.3%	0	-	benign(0.229)	deleterious(0.01)	neutral(0.429)	NULL
CCDC47	57003	genome.wustl.edu	37	17	61829344	61829344	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020198.2	-1	validated	p.R443*	1.000	230	0%	128	32%	129	34.1%	-	-	-	HMMPfam_DUF1682
SMARCD2	6603	genome.wustl.edu	37	17	61911902	61911902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098426.1	-1	reviewed	p.G285S	1.000	236	0%	131	27.5%	170	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CEP95	90799	genome.wustl.edu	37	17	62510396	62510396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138363.1	+1	provisional	p.S96Y	1.000	4	0.000	13	0.308	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CEP95	90799	genome.wustl.edu	37	17	62528094	62528094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397727	+1	known	p.R478H	0.048	195	0%	149	28.2%	12	66.6%	benign(0.005)	tolerated(0.17)	neutral(0.059)	NULL
SMURF2	64750	genome.wustl.edu	37	17	62552003	62552003	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022739.3	-1	validated	p.K515	1.000	219	0%	116	15.5%	25	40%	-	-	-	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
LRRC37A3	374819	genome.wustl.edu	37	17	62856384	62856384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199340.2	-1	provisional	p.T1294A	0.000	462	0%	269	32%	0	-	benign(0)	tolerated(1)	-	NULL
LRRC37A3	374819	genome.wustl.edu	37	17	62893154	62893154	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199340.2	-1	provisional	p.A74	0.000	717	0%	407	8.1%	2	0%	-	-	-	NULL
ENSG00000232457	0	genome.wustl.edu	37	17	62950546	62950546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413214	+1	known	p.S102Y	0.998	144	0%	85	35.3%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
GNA13	10672	genome.wustl.edu	37	17	63010563	63010563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006572.4	-1	validated	p.P316T	1.000	264	0%	151	26.5%	15	33.3%	benign(0.167)	tolerated(0.06)	neutral(0.338)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP112	201134	genome.wustl.edu	37	17	64066072	64066072	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145036.3	-1	validated	p.K272	1.000	203	0%	146	28.8%	0	-	-	-	-	NULL
PRKCA	5578	genome.wustl.edu	37	17	64683246	64683246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002737.2	+1	reviewed	p.L183I	0.997	373	0%	209	28.2%	2	50%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PRKCA	5578	genome.wustl.edu	37	17	64770134	64770134	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002737.2	+1	reviewed	p.S518	0.131	217	0%	102	32.4%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CACNG1	786	genome.wustl.edu	37	17	65052332	65052332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000727.2	+1	reviewed	p.P205H	1.000	107	0%	52	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HELZ	9931	genome.wustl.edu	37	17	65214760	65214760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014877.3	-1	validated	p.R54H	1.000	352	0%	235	10.6%	2	0%	possibly_damaging(0.782)	tolerated(0.13)	deleterious(0.545)	NULL
PSMD12	5718	genome.wustl.edu	37	17	65344689	65344689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002816.3	-1	reviewed	p.A163T	1.000	153	0%	81	9.9%	76	19.7%	possibly_damaging(0.476)	tolerated(0.24)	neutral(0.195)	NULL
NOL11	25926	genome.wustl.edu	37	17	65735703	65735703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015462.3	+1	provisional	p.I638M	0.014	150	0.7%	92	9.8%	59	18.6%	benign(0.252)	tolerated(0.07)	neutral(0.345)	NULL
BPTF	2186	genome.wustl.edu	37	17	65908388	65908388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182641.3	+1	reviewed	p.R1463M	1.000	346	0%	217	24.4%	7	14.2%	possibly_damaging(0.496)	deleterious(0)	deleterious(0.610)	NULL
C17orf58	284018	genome.wustl.edu	37	17	65988152	65988152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181655.2	-1	validated	p.Q57H	0.851	86	0%	40	10%	20	40%	benign(0.001)	tolerated(0.62)	neutral(0.004)	superfamily_TIMP-like
ARSG	22901	genome.wustl.edu	37	17	66352835	66352835	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014960.3	+1	validated	p.D198	0.017	143	0%	69	10.1%	1	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
WIPI1	55062	genome.wustl.edu	37	17	66446992	66446992	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017983.5	-1	validated	p.S70	1.000	79	1.3%	48	18.8%	31	41.9%	-	-	-	superfamily_WD40 repeat-like
ABCA8	10351	genome.wustl.edu	37	17	66871435	66871435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.L1493M	0.997	222	0%	101	35.6%	1	0%	possibly_damaging(0.571)	tolerated(0.21)	neutral(0.239)	NULL
ABCA9	10350	genome.wustl.edu	37	17	66982323	66982323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.A1397V	0.006	595	0.2%	357	30.3%	1	0%	probably_damaging(0.998)	tolerated(0.84)	deleterious(0.475)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA6	23460	genome.wustl.edu	37	17	67111040	67111040	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080284.2	-1	reviewed	p.Q549*	0.993	363	0.3%	366	25.1%	1	100%	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA5	23461	genome.wustl.edu	37	17	67246735	67246735	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018672.3	-1	reviewed	p.K1521N	1.000	93	0%	92	13%	14	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C17orf80	55028	genome.wustl.edu	37	17	71232658	71232658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017941.4	+1	validated	p.S346Y	0.000	161	0%	109	11%	8	0%	probably_damaging(0.983)	deleterious(0.05)	deleterious(0.774)	NULL
SDK2	54549	genome.wustl.edu	37	17	71375651	71375651	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.S1600	0.344	35	0%	15	40%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK2	54549	genome.wustl.edu	37	17	71394314	71394314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.R1072C	1.000	39	0%	19	26.3%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CD300C	10871	genome.wustl.edu	37	17	72540842	72540842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006678.3	-1	provisional	p.E102D	0.000	236	0%	125	25.6%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
C17orf77	146723	genome.wustl.edu	37	17	72588476	72588476	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152460.2	+1	validated	p.I97	0.000	322	0%	158	27.2%	0	-	-	-	-	NULL
OTOP2	92736	genome.wustl.edu	37	17	72926422	72926422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178160.2	+1	validated	p.A231V	0.002	226	0%	131	32.8%	0	-	benign(0.077)	deleterious(0.04)	neutral(0.354)	NULL
OTOP2	92736	genome.wustl.edu	37	17	72927198	72927198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178160.2	+1	validated	p.R490C	0.994	116	0%	74	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C17orf28	283987	genome.wustl.edu	37	17	72951921	72951921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030630.2	-1	validated	p.E534D	1.000	48	0%	13	30.8%	113	43.3%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_Hid1
CDR2L	30850	genome.wustl.edu	37	17	73000136	73000136	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014603.2	+1	validated	p.N455	0.906	36	0%	16	31.2%	24	25%	-	-	-	NULL
SLC16A5	9121	genome.wustl.edu	37	17	73096480	73096480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004695.2	+1	provisional	p.Y241C	0.949	101	0%	68	32.4%	20	45%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
HN1	51155	genome.wustl.edu	37	17	73144701	73144701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002032.1	-1	validated	p.P41H	0.884	158	0%	118	23.7%	297	45.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NUP85	79902	genome.wustl.edu	37	17	73227514	73227514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024844.3	+1	reviewed	p.L392I	1.000	312	0%	149	23.5%	60	55%	possibly_damaging(0.744)	tolerated(0.64)	neutral(0.276)	HMMPfam_Nucleopor_Nup85
NUP85	79902	genome.wustl.edu	37	17	73228981	73228981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024844.3	+1	reviewed	p.V478I	0.983	371	0%	210	28.6%	55	49%	benign(0.013)	tolerated(0.25)	neutral(0.037)	HMMPfam_Nucleopor_Nup85
KIAA0195	9772	genome.wustl.edu	37	17	73489846	73489846	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014738.4	+1	validated	p.K752	1.000	81	0%	39	38.5%	11	9%	-	-	-	NULL
KIAA0195	9772	genome.wustl.edu	37	17	73494595	73494595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014738.4	+1	validated	p.A1237T	1.000	25	0%	15	33.3%	32	0%	probably_damaging(0.999)	tolerated(0.32)	deleterious(0.514)	superfamily_Calcium ATPase transmembrane domain M
LLGL2	3993	genome.wustl.edu	37	17	73552193	73552193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031803.1	+1	reviewed	p.A48T	1.000	39	0%	19	21.1%	63	31.7%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMSmart_SM00320,superfamily_WD40 repeat-like
LLGL2	3993	genome.wustl.edu	37	17	73564653	73564653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031803.1	+1	reviewed	p.Y378C	1.000	16	0%	11	45.5%	119	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
UNK	85451	genome.wustl.edu	37	17	73814765	73814765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080419.1	+1	provisional	p.S548G	1.000	38	0%	17	29.4%	19	26.3%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
ACOX1	51	genome.wustl.edu	37	17	73951752	73951752	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004035.6	-1	reviewed	p.V223	0.545	123	0%	72	15.3%	56	16%	-	-	-	superfamily_AcylCoA_dehyd_NM
EVPL	2125	genome.wustl.edu	37	17	74004922	74004922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.T1455M	0.160	260	0.4%	115	31.3%	9	22.2%	benign(0.286)	deleterious(0.05)	neutral(0.433)	NULL
EVPL	2125	genome.wustl.edu	37	17	74005049	74005049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.R1413W	0.305	100	0%	57	35.1%	9	55.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
EVPL	2125	genome.wustl.edu	37	17	74006254	74006254	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.Q1011R	0.158	87	0%	49	20.4%	9	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
SRP68	6730	genome.wustl.edu	37	17	74035844	74035844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014230.2	-1	reviewed	p.Q609H	1.000	74	0%	44	29.5%	188	42.5%	probably_damaging(0.992)	tolerated(0.08)	deleterious(0.748)	NULL
QRICH2	84074	genome.wustl.edu	37	17	74287479	74287479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032134.1	-1	provisional	p.Y944C	0.002	109	0%	60	33.3%	2	50%	benign(0)	deleterious(0)	neutral(0.445)	NULL
PRPSAP1	5635	genome.wustl.edu	37	17	74324819	74324819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002766.2	-1	validated	p.H254Y	1.000	165	0%	108	29.6%	54	57.4%	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_PRTase-like
UBE2O	63893	genome.wustl.edu	37	17	74387294	74387294	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.G1203	0.661	64	0%	34	14.7%	24	33.3%	-	-	-	NULL
UBE2O	63893	genome.wustl.edu	37	17	74396258	74396258	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.C375	1.000	94	0%	37	21.6%	6	16.6%	-	-	-	NULL
MFSD11	79157	genome.wustl.edu	37	17	74772591	74772591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024311.2	+1	provisional	p.A385T	1.000	407	0%	227	27.8%	30	40%	benign(0.227)	tolerated(0.08)	neutral(0.323)	superfamily_MFS general substrate transporter
MGAT5B	146664	genome.wustl.edu	37	17	74934121	74934121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198955.1	+1	validated	p.T503A	1.000	136	0%	73	24.7%	3	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SEC14L1	6397	genome.wustl.edu	37	17	75190888	75190888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039573.2	+1	reviewed	p.A202S	0.001	241	0%	149	30.9%	66	37.8%	benign(0)	tolerated(0.9)	-	NULL
SEPT9	10801	genome.wustl.edu	37	17	75471731	75471731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113495.1	+1	reviewed	p.T44M	0.000	33	0%	15	33.3%	0	-	unknown(0)	-	-	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76045538	76045538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142640.1	+1	validated	p.A132D	1.000	179	0.6%	112	39.3%	3	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
TNRC6C	57690	genome.wustl.edu	37	17	76079172	76079172	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142640.1	+1	validated	p.L1131	1.000	173	0%	103	28.2%	6	50%	-	-	-	NULL
SYNGR2	9144	genome.wustl.edu	37	17	76167590	76167590	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004710.3	+1	reviewed	e3-1	1.000	30	0%	19	47.4%	1	100%	-	-	-	-
DNAH17	8632	genome.wustl.edu	37	17	76420011	76420011	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.A4478	0.111	114	0%	57	26.3%	7	57.1%	-	-	-	HMMPfam_Dynein_heavy
DNAH17	8632	genome.wustl.edu	37	17	76501473	76501473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.L1616F	0.001	56	0%	29	41.4%	0	-	benign(0.3)	deleterious(0.05)	neutral(0.439)	HMMPfam_DHC_N2
DNAH17	8632	genome.wustl.edu	37	17	76522786	76522786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.R1220C	0.000	56	0%	33	39.4%	0	-	benign(0.081)	deleterious(0.01)	neutral(0.412)	NULL
DNAH17	8632	genome.wustl.edu	37	17	76526517	76526517	+	Silent	SNP	G	G	A	rs186420030	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.C1064	0.374	73	0%	57	10.5%	0	-	-	-	-	superfamily_Spectrin repeat
CYTH1	9267	genome.wustl.edu	37	17	76694946	76694946	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004762.2	-1	reviewed	p.R219*	0.998	357	0%	202	37.6%	11	18.1%	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
USP36	57602	genome.wustl.edu	37	17	76803224	76803224	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.A634	0.000	54	0%	26	23.1%	13	38.4%	-	-	-	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76968042	76968042	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005567.3	-1	reviewed	p.Y458	0.022	45	0%	26	26.9%	303	30.3%	-	-	-	NULL
CBX4	8535	genome.wustl.edu	37	17	77808708	77808708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003655.2	-1	validated	p.G245R	0.994	109	0%	50	18%	27	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CARD14	79092	genome.wustl.edu	37	17	78165265	78165265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024110.2	+1	reviewed	p.P411	0.000	49	0%	12	50%	1	0%	-	-	-	NULL
SLC26A11	284129	genome.wustl.edu	37	17	78196512	78196512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173626.3	+1	reviewed	p.R98Q	1.000	116	0%	52	23.1%	12	66.6%	possibly_damaging(0.741)	deleterious(0.01)	deleterious(0.677)	PatternScan_SLC26A
RNF213	57674	genome.wustl.edu	37	17	78262463	78262463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020954.2	+1	validated	p.A281V	0.000	181	0%	83	37.3%	12	0%	unknown(0)	tolerated(0.15)	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78269614	78269614	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020954.2	+1	validated	e9+1	0.984	379	0%	180	25%	4	100%	-	-	-	-
RNF213	57674	genome.wustl.edu	37	17	78317117	78317117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.T2059A	1.000	20	0.000	9	0.444	1	0%	benign(0.334)	tolerated(0.11)	neutral(0.377)	NULL
RNF213	57674	genome.wustl.edu	37	17	78320322	78320322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.Q2729H	1.000	93	0%	42	31%	2	50%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_P-loop containing nucleoside triphosphate hydrolases
RNF213	57674	genome.wustl.edu	37	17	78321294	78321294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.Q3053H	1.000	81	0%	33	33.3%	2	0%	benign(0.03)	tolerated(0.18)	neutral(0.058)	NULL
ENSG00000234591	0	genome.wustl.edu	37	17	78327612	78327612	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434136	-1	known	p.R45S	0.000	26	0%	16	25%	0	-	-	-	-	NULL
RPTOR	57521	genome.wustl.edu	37	17	78796892	78796892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020761.2	+1	reviewed	p.K335N	1.000	274	0%	147	11.6%	12	41.6%	possibly_damaging(0.893)	deleterious(0)	deleterious(0.796)	NULL
LINC00482	284185	genome.wustl.edu	37	17	79278435	79278435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178519.2	-1	predicted	p.A244T	0.002	9	0.000	6	0.667	0	-	unknown(0)	-	-	NULL
C17orf90	339229	genome.wustl.edu	37	17	79632453	79632453	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039842.1	-1	predicted	p.R74	0.000	24	0%	17	41.2%	73	43.8%	-	-	-	NULL
HGS	9146	genome.wustl.edu	37	17	79662041	79662041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004712.3	+1	provisional	p.T355A	0.241	45	0%	24	37.5%	85	45.8%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
NOTUM	147111	genome.wustl.edu	37	17	79910901	79910901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178493.5	-1	validated	p.T476M	0.995	158	0%	87	31%	4	25%	possibly_damaging(0.946)	tolerated(0.08)	deleterious(0.690)	NULL
CCDC57	284001	genome.wustl.edu	37	17	80141712	80141712	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198082.2	-1	validated	p.T383	0.000	27	0%	22	18.2%	3	66.6%	-	-	-	NULL
C17orf101	79701	genome.wustl.edu	37	17	80373362	80373362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175902.4	-1	validated	p.E72D	0.994	48	0%	31	25.8%	4	75%	benign(0.414)	tolerated(0.37)	neutral(0.153)	NULL
HEXDC	284004	genome.wustl.edu	37	17	80393598	80393598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173620.2	+1	validated	p.R161W	0.045	27	0%	18	33.3%	25	40%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat
ZNF750	79755	genome.wustl.edu	37	17	80789803	80789803	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024702.2	-1	reviewed	p.A176	0.000	78	0%	37	24.3%	2	0%	-	-	-	NULL
TBCD	6904	genome.wustl.edu	37	17	80884358	80884358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.A821D	0.998	68	0%	31	19.4%	53	11.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
COLEC12	81035	genome.wustl.edu	37	18	347314	347314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130386.2	-1	validated	p.S103N	0.999	234	0%	116	11.2%	2	0%	unknown(0)	-	-	NULL
ENOSF1	55556	genome.wustl.edu	37	18	694278	694278	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202758.2	-1	validated	p.V143	1.000	29	0%	14	50%	26	11.5%	-	-	-	HMMPfam_MR_MLE_N,superfamily_SSF54826
NDC80	10403	genome.wustl.edu	37	18	2575030	2575030	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006101.2	+1	validated	p.P48	0.000	79	0%	54	29.6%	11	36.3%	-	-	-	HMMPfam_Ndc80_HEC
SMCHD1	23347	genome.wustl.edu	37	18	2705754	2705754	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.G635	0.990	283	0%	184	22.3%	5	40%	-	-	-	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2762168	2762168	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.P1500	0.999	317	0%	210	28.6%	16	43.7%	-	-	-	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2778191	2778191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.T1834I	1.000	41	0%	32	18.8%	18	72.2%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_SMC_hinge,superfamily_Smc hinge domain
EMILIN2	84034	genome.wustl.edu	37	18	2892416	2892416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032048.2	+1	validated	p.Q764R	0.981	152	0%	84	28.6%	2	50%	benign(0.044)	tolerated(0.43)	neutral(0.016)	NULL
LPIN2	9663	genome.wustl.edu	37	18	2960646	2960646	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014646.2	-1	reviewed	e1+1	1.000	531	0%	323	11.8%	2	100%	-	-	-	-
MYOM1	8736	genome.wustl.edu	37	18	3134703	3134703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.V777I	0.000	112	0%	52	28.8%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TGIF1	7050	genome.wustl.edu	37	18	3457581	3457581	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170695.2	+1	reviewed	p.R283	0.989	130	0.8%	85	27.1%	170	40%	-	-	-	NULL
DLGAP1	9229	genome.wustl.edu	37	18	3879813	3879813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004746.2	-1	provisional	p.A86T	1.000	26	0%	18	22.2%	3	66.6%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
DLGAP1	9229	genome.wustl.edu	37	18	3879983	3879983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004746.2	-1	provisional	p.R29H	1.000	30	0%	18	22.2%	7	85.7%	benign(0.167)	tolerated(0.18)	neutral(0.071)	NULL
ZFP161	7541	genome.wustl.edu	37	18	5292118	5292118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143823.1	-1	validated	p.R30H	1.000	154	0%	81	28.4%	7	57.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_BTB/POZ_fold,HMMPfam_BTB
EPB41L3	23136	genome.wustl.edu	37	18	5423513	5423513	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012307.2	-1	provisional	p.T401	0.997	207	0%	110	29.1%	7	71.4%	-	-	-	HMMPfam_FA,superfamily_PH domain-like
L3MBTL4	91133	genome.wustl.edu	37	18	5969409	5969409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173464.3	-1	validated	p.R542C	0.001	80	0%	44	38.6%	4	50%	benign(0.152)	deleterious(0.01)	neutral(0.419)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
LAMA1	284217	genome.wustl.edu	37	18	6958629	6958629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.P2604H	0.997	220	0%	112	21.4%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
PTPRM	5797	genome.wustl.edu	37	18	8069820	8069820	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.V423	0.330	270	0%	142	28.9%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PTPRM	5797	genome.wustl.edu	37	18	8244116	8244116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.M787I	1.000	427	0%	243	28%	2	0%	benign(0.221)	deleterious(0.05)	neutral(0.367)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8796245	8796245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.L676I	0.994	199	0%	126	37.3%	0	-	benign(0.429)	tolerated(0.32)	neutral(0.164)	NULL
SOGA2	23255	genome.wustl.edu	37	18	8825297	8825297	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.T1263	0.984	55	0%	18	27.8%	0	-	-	-	-	NULL
NDUFV2	4729	genome.wustl.edu	37	18	9122648	9122648	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021074.4	+1	reviewed	p.D146	1.000	344	0%	202	26.2%	319	42%	-	-	-	HMMPfam_Complex1_24kDa,superfamily_Thiordxn-like_fd
TWSG1	57045	genome.wustl.edu	37	18	9337247	9337247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020648.5	+1	validated	p.A7D	0.000	366	0%	205	26.3%	25	36%	benign(0.002)	tolerated(0.17)	neutral(0.059)	NULL
RALBP1	10928	genome.wustl.edu	37	18	9517301	9517301	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006788.3	+1	validated	p.G235*	1.000	139	0%	91	17.6%	48	14.5%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
RALBP1	10928	genome.wustl.edu	37	18	9524601	9524601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006788.3	+1	validated	p.R355*	1.000	77	0%	41	36.6%	35	2.8%	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
PPP4R1	9989	genome.wustl.edu	37	18	9562041	9562041	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042388.1	-1	validated	p.S593	0.144	228	0.4%	144	27.8%	52	36.5%	-	-	-	superfamily_ARM repeat
PPP4R1	9989	genome.wustl.edu	37	18	9583120	9583120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042388.1	-1	validated	p.R305C	1.000	261	0%	170	34.7%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
RAB31	11031	genome.wustl.edu	37	18	9859264	9859264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006868.3	+1	validated	p.N177S	0.999	105	0%	47	17%	11	0%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAPG	8774	genome.wustl.edu	37	18	10534480	10534480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003826.2	+1	reviewed	p.G82E	1.000	144	0%	109	27.5%	12	66.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NSF,superfamily_TPR-like
PIEZO2	63895	genome.wustl.edu	37	18	10681658	10681658	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503781	-1	known	p.T374	0.844	383	0.3%	203	24.1%	0	-	-	-	-	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11609956	11609956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928960.2	+1	model	p.A121V	0.538	266	0%	120	35%	0	-	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_DUF6
SLC35G4	646000	genome.wustl.edu	37	18	11610225	11610225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928960.2	+1	model	p.R211C	0.890	286	0%	131	10.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC35G4	646000	genome.wustl.edu	37	18	11610402	11610402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928960.2	+1	model	p.V270M	0.941	172	0%	84	31%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	superfamily_SSF103481
IMPA2	3613	genome.wustl.edu	37	18	12028090	12028090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014214.1	+1	validated	p.P180H	0.999	151	0%	91	24.2%	12	25%	benign(0.016)	deleterious(0.04)	neutral(0.349)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
TUBB6	84617	genome.wustl.edu	37	18	12325778	12325778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032525.1	+1	provisional	p.M330I	1.000	155	0%	76	15.8%	12	0%	benign(0.123)	deleterious(0.01)	neutral(0.416)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
AFG3L2	10939	genome.wustl.edu	37	18	12351329	12351329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006796.1	-1	reviewed	p.R468C	1.000	156	0%	88	27.3%	64	35.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
SPIRE1	56907	genome.wustl.edu	37	18	12512498	12512498	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128626.1	-1	validated	p.S254	0.014	402	0.2%	253	14.2%	5	40%	-	-	-	NULL
CEP192	55125	genome.wustl.edu	37	18	13049296	13049296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032142.3	+1	validated	p.A240T	0.001	370	0%	221	26.7%	9	55.5%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
C18orf1	753	genome.wustl.edu	37	18	13645354	13645354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181481.3	+1	validated	p.A207T	1.000	135	0%	68	29.4%	9	22.2%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MC5R	4161	genome.wustl.edu	37	18	13826716	13826716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005913.1	+1	provisional	p.A318T	0.000	98	1%	41	24.4%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
LOC646359	646359	genome.wustl.edu	37	18	14378063	14378063	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_929288.3	-1	model	p.L234	0.710	153	0%	91	26.4%	0	-	-	-	-	HMMPfam_TRF,superfamily_Telomeric repeat binding factor (TRF) dimerisation domain
POTEC	388468	genome.wustl.edu	37	18	14511806	14511806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444806	-1	known	p.A573V	0.001	203	0%	116	16.4%	0	-	-	-	-	NULL
ENSG00000180777	0	genome.wustl.edu	37	18	14814680	14814680	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000320584	+1	known	p.E193*	0.014	110	0.9%	64	12.5%	0	-	-	-	-	NULL
ABHD3	171586	genome.wustl.edu	37	18	19239131	19239131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138340.4	-1	reviewed	p.K281R	1.000	190	0%	110	32.7%	13	46.1%	benign(0)	tolerated(1)	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
RBBP8	5932	genome.wustl.edu	37	18	20562227	20562227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002894.2	+1	reviewed	p.V159I	0.959	268	0%	178	24.2%	48	20.8%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
RBBP8	5932	genome.wustl.edu	37	18	20573117	20573117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002894.2	+1	reviewed	p.R443*	0.997	236	0%	154	24%	50	20%	-	-	-	NULL
CABLES1	91768	genome.wustl.edu	37	18	20794000	20794000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100619.2	+1	validated	p.R357H	1.000	426	0%	204	27%	8	50%	probably_damaging(0.999)	tolerated(0.3)	deleterious(0.519)	NULL
C18orf8	29919	genome.wustl.edu	37	18	21110477	21110477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013326.3	+1	validated	p.A599T	1.000	152	0.7%	97	34%	27	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Mic1
NPC1	4864	genome.wustl.edu	37	18	21136235	21136235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000271.4	-1	reviewed	p.P433H	1.000	294	0%	151	25.8%	20	35%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_Patched
NPC1	4864	genome.wustl.edu	37	18	21140242	21140242	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000271.4	-1	reviewed	p.A278	0.003	321	0%	206	29.6%	11	63.6%	-	-	-	NULL
LAMA3	3909	genome.wustl.edu	37	18	21526163	21526163	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198129.1	+1	reviewed	p.A3089V	0.017	336	0%	206	16.5%	8	25%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ZNF521	25925	genome.wustl.edu	37	18	22805247	22805247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.V879I	0.997	315	0%	189	30.2%	1	0%	benign(0.004)	tolerated(0.39)	neutral(0.016)	superfamily_C2H2 and C2HC zinc fingers
SS18	6760	genome.wustl.edu	37	18	23667480	23667480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007559.1	-1	validated	p.T44I	1.000	206	0%	125	28%	22	40.9%	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMPfam_SSXT
KCTD1	284252	genome.wustl.edu	37	18	24039623	24039623	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142730.1	-1	validated	p.R800	1.000	153	0%	73	27.4%	41	41.4%	-	-	-	NULL
AQP4	361	genome.wustl.edu	37	18	24442317	24442317	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001650.4	-1	reviewed	p.S92	0.179	241	0%	118	31.4%	0	-	-	-	-	HMMPfam_MIP,superfamily_Aquaporin-like
CHST9	83539	genome.wustl.edu	37	18	24497149	24497149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031422.4	-1	validated	p.R136C	0.002	1218	0%	766	26.5%	0	-	possibly_damaging(0.846)	deleterious(0.01)	deleterious(0.731)	HMMPfam_Sulfotransfer_2
CDH2	1000	genome.wustl.edu	37	18	25573540	25573540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001792.3	-1	reviewed	p.G361D	1.000	370	0%	199	24.1%	54	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH2	1000	genome.wustl.edu	37	18	25585815	25585815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001792.3	-1	reviewed	p.P282H	1.000	359	0%	253	29.2%	22	40.9%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28654750	28654750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024422.3	-1	reviewed	p.A596V	0.963	111	0%	96	20.8%	68	36.7%	possibly_damaging(0.705)	deleterious(0.01)	deleterious(0.659)	HMMSmart_SM00112,superfamily_Cadherin-like
DSC2	1824	genome.wustl.edu	37	18	28659899	28659899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024422.3	-1	reviewed	p.S526L	0.113	583	0%	438	29.9%	48	54.1%	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28722109	28722109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024421.2	-1	reviewed	p.E371D	0.110	347	0%	199	32.2%	0	-	benign(0.3)	deleterious(0.01)	deleterious(0.499)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSC1	1823	genome.wustl.edu	37	18	28736009	28736009	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024421.2	-1	reviewed	p.Q156	1.000	162	0%	99	25.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28934858	28934858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001942.2	+1	reviewed	p.A900E	0.999	574	0.2%	356	11.8%	0	-	probably_damaging(1)	tolerated(0.37)	deleterious(0.519)	NULL
DSG4	147409	genome.wustl.edu	37	18	28991317	28991317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.G773V	0.899	70	0%	46	10.9%	0	-	unknown(0)	deleterious(0)	-	NULL
DSG3	1830	genome.wustl.edu	37	18	29037016	29037016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.R49C	1.000	645	0.2%	480	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DSG2	1829	genome.wustl.edu	37	18	29111056	29111056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.P374L	0.994	465	0.2%	265	25.3%	59	49.1%	possibly_damaging(0.926)	tolerated(0.26)	neutral(0.408)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29125767	29125767	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.S806	0.032	383	0.3%	282	28.7%	79	45.5%	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29477855	29477855	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	e11-1	1.000	109	0.9%	69	24.6%	0	-	-	-	-	-
RNF125	54941	genome.wustl.edu	37	18	29622236	29622236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017831.3	+1	reviewed	p.R138M	0.990	60	0%	29	20.7%	10	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
MEP1B	4225	genome.wustl.edu	37	18	29793098	29793098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005925.2	+1	validated	p.W385C	1.000	361	0%	194	28.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAM,HMMSmart_SM00137
MEP1B	4225	genome.wustl.edu	37	18	29793441	29793441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005925.2	+1	validated	p.T500A	1.000	310	0%	153	26.1%	0	-	benign(0.031)	tolerated(0.29)	neutral(0.031)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
FAM59A	64762	genome.wustl.edu	37	18	29848004	29848004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022751.1	-1	provisional	p.R820W	0.922	111	0%	50	30%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SAM_1,superfamily_SAM_homology
NOL4	8715	genome.wustl.edu	37	18	31709947	31709947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003787.3	-1	validated	p.R101Q	1.000	458	0%	352	27%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
ZNF397	84307	genome.wustl.edu	37	18	32825920	32825920	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135178.2	+1	reviewed	p.R417	1.000	98	0%	58	17.2%	12	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF24	7572	genome.wustl.edu	37	18	32920289	32920289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006965.2	-1	validated	p.Q109L	1.000	880	0%	535	31.4%	29	27.5%	unknown(0)	deleterious(0)	-	HMMPfam_SCAN,HMMSmart_SCAN
SLC39A6	25800	genome.wustl.edu	37	18	33689577	33689577	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.I749	1.000	318	0%	199	21.1%	60	3.3%	-	-	-	NULL
SLC39A6	25800	genome.wustl.edu	37	18	33706379	33706379	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.G198*	1.000	312	0%	156	20.5%	68	7.3%	-	-	-	NULL
MOCOS	55034	genome.wustl.edu	37	18	33775247	33775247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017947.2	+1	validated	p.A57V	1.000	160	0%	69	30.4%	2	50%	possibly_damaging(0.844)	deleterious(0.03)	deleterious(0.688)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
MOCOS	55034	genome.wustl.edu	37	18	33793366	33793366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017947.2	+1	validated	p.R419Q	1.000	69	0%	48	16.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
TPGS2	25941	genome.wustl.edu	37	18	34398894	34398894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015476.2	-1	provisional	p.P43H	0.001	191	0%	104	15.4%	135	35.5%	possibly_damaging(0.654)	tolerated(0.13)	deleterious(0.483)	NULL
KIAA1328	57536	genome.wustl.edu	37	18	34802112	34802112	+	Silent	SNP	C	C	A	rs9953605	byCluster;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020776.1	+1	validated	p.T552	0.000	141	0.7%	65	35.4%	1	100%	-	-	-	NULL
CELF4	56853	genome.wustl.edu	37	18	34855149	34855149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020180.3	-1	reviewed	p.R169H	1.000	79	0%	29	27.6%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PIK3C3	5289	genome.wustl.edu	37	18	39609395	39609395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002647.2	+1	validated	p.R566H	1.000	177	0.6%	108	27.8%	15	26.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Kinase_like
PIK3C3	5289	genome.wustl.edu	37	18	39623769	39623769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002647.2	+1	validated	p.V726I	1.000	288	0%	156	34%	29	55.1%	benign(0.317)	tolerated(0.72)	neutral(0.101)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
SYT4	6860	genome.wustl.edu	37	18	40853973	40853973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020783.3	-1	validated	p.S141P	1.000	232	0%	172	31.4%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42532311	42532311	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015559.2	+1	validated	p.D1002	1.000	409	0.2%	258	25.6%	3	66.6%	-	-	-	NULL
SLC14A2	8170	genome.wustl.edu	37	18	43246111	43246111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007163.3	+1	validated	p.K495R	0.755	269	0.4%	151	24.5%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
EPG5	57724	genome.wustl.edu	37	18	43440240	43440240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.A2280T	0.951	208	0%	127	31.5%	18	16.6%	benign(0.124)	tolerated(0.53)	neutral(0.018)	NULL
EPG5	57724	genome.wustl.edu	37	18	43496115	43496115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020964.2	-1	validated	p.E1147D	1.000	208	0%	114	15.8%	2	0%	possibly_damaging(0.858)	tolerated(0.09)	deleterious(0.627)	NULL
RNF165	494470	genome.wustl.edu	37	18	44013185	44013185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152470.2	+1	validated	p.A32T	1.000	18	0.000	9	0.444	0	-	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	NULL
ST8SIA5	29906	genome.wustl.edu	37	18	44284628	44284628	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013305.4	-1	reviewed	e2-1	1.000	271	0.4%	164	24.4%	0	-	-	-	-	-
PIAS2	9063	genome.wustl.edu	37	18	44407979	44407979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004671.2	-1	validated	p.P484H	1.000	292	0%	248	31.5%	26	65.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44559495	44559495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016427.2	-1	reviewed	p.L714P	0.000	121	0%	55	25.5%	0	-	probably_damaging(0.997)	tolerated(0.66)	deleterious(0.469)	NULL
SMAD2	4087	genome.wustl.edu	37	18	45395657	45395657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003652.2	-1	reviewed	p.E159D	1.000	122	0%	80	25%	66	46.9%	possibly_damaging(0.857)	tolerated(0.26)	neutral(0.365)	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain
CTIF	9811	genome.wustl.edu	37	18	46238044	46238044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142397.1	+1	validated	p.R188C	1.000	253	0%	107	25.2%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DYM	54808	genome.wustl.edu	37	18	46798650	46798650	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017653.3	-1	reviewed	p.L383	0.302	217	0%	150	29.3%	33	72.7%	-	-	-	HMMPfam_Dymeclin
LIPG	9388	genome.wustl.edu	37	18	47101787	47101787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006033.2	+1	reviewed	p.R207M	1.000	126	0%	68	33.8%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
MYO5B	4645	genome.wustl.edu	37	18	47364146	47364146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.I1627V	1.000	156	0%	58	25.9%	33	24.2%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	NULL
MYO5B	4645	genome.wustl.edu	37	18	47421460	47421460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.L966M	1.000	88	0%	44	25%	11	54.5%	possibly_damaging(0.653)	tolerated(0.09)	deleterious(0.526)	NULL
MYO5B	4645	genome.wustl.edu	37	18	47500878	47500878	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.Y388	0.935	430	0%	254	33.1%	14	35.7%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO5B	4645	genome.wustl.edu	37	18	47518770	47518770	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.D215V	1.000	888	0.1%	534	29.2%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
SKA1	220134	genome.wustl.edu	37	18	47917598	47917598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039535.2	+1	validated	p.S185Y	1.000	299	0%	192	31.2%	6	50%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	HMMPfam_DUF1395
MEX3C	51320	genome.wustl.edu	37	18	48703694	48703694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016626.4	-1	reviewed	p.R336H	1.000	230	0%	119	42%	28	46.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
DCC	1630	genome.wustl.edu	37	18	50985744	50985744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.P1179T	1.000	644	0%	351	24.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Neogenin_C
DCC	1630	genome.wustl.edu	37	18	51025806	51025806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.A1346V	1.000	361	0%	252	30.2%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_Neogenin_C
MBD2	8932	genome.wustl.edu	37	18	51686193	51686193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003927.3	-1	reviewed	p.D397G	0.998	243	0%	138	32.6%	256	55.4%	possibly_damaging(0.474)	tolerated(0.08)	neutral(0.457)	NULL
C18orf54	162681	genome.wustl.edu	37	18	51886948	51886948	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173529.4	+1	validated	p.A2	0.970	321	0%	194	27.3%	0	-	-	-	-	NULL
CCDC68	80323	genome.wustl.edu	37	18	52604116	52604116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143829.1	-1	validated	p.T140M	0.020	104	1%	67	40.3%	0	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
TCF4	6925	genome.wustl.edu	37	18	52896225	52896225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083962.1	-1	reviewed	p.R578C	1.000	208	0%	133	12%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
TXNL1	9352	genome.wustl.edu	37	18	54270181	54270181	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024546.1	-1	validated	NULL	1.000	138	0%	99	32.3%	104	40.3%	-	-	-	-
ATP8B1	5205	genome.wustl.edu	37	18	55398983	55398983	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005603.4	-1	reviewed	p.D19	0.997	684	0.1%	398	10.6%	7	0%	-	-	-	superfamily_SSF81665
ALPK2	115701	genome.wustl.edu	37	18	56184342	56184342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.R1913H	0.941	242	0%	141	33.3%	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
ALPK2	115701	genome.wustl.edu	37	18	56203086	56203086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.A1445S	0.000	186	0.5%	113	11.5%	0	-	benign(0.032)	deleterious(0.04)	neutral(0.350)	NULL
MALT1	10892	genome.wustl.edu	37	18	56400687	56400687	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006785.2	+1	reviewed	p.P427	0.961	320	0.3%	196	31.1%	10	40%	-	-	-	HMMPfam_Peptidase_C14,superfamily_Caspase-like
ZNF532	55205	genome.wustl.edu	37	18	56586449	56586449	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.A310	0.000	1014	0.1%	539	26%	13	53.8%	-	-	-	NULL
ZNF532	55205	genome.wustl.edu	37	18	56587363	56587363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.G615V	1.000	282	0%	155	11%	18	5.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56587790	56587790	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.L757	1.000	292	0%	150	27.3%	29	31%	-	-	-	HMMSmart_ZnF_C2H2
ZNF532	55205	genome.wustl.edu	37	18	56615411	56615411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.D940N	1.000	327	0%	198	28.8%	15	13.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CCBE1	147372	genome.wustl.edu	37	18	57103373	57103373	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133459.3	-1	reviewed	p.G330*	1.000	140	0%	96	12.5%	0	-	-	-	-	HMMPfam_Collagen
CCBE1	147372	genome.wustl.edu	37	18	57106930	57106930	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133459.3	-1	reviewed	p.K298	1.000	388	0%	222	26.1%	0	-	-	-	-	NULL
CDH20	28316	genome.wustl.edu	37	18	59166445	59166445	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031891.2	+1	reviewed	p.D91	0.975	50	0%	35	20%	1	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH20	28316	genome.wustl.edu	37	18	59203799	59203799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031891.2	+1	reviewed	p.A449T	1.000	354	0%	225	22.2%	0	-	benign(0.167)	tolerated(0.81)	neutral(0.015)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CDH20	28316	genome.wustl.edu	37	18	59217384	59217384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031891.2	+1	reviewed	p.P608T	1.000	146	0%	54	13%	0	-	benign(0.002)	tolerated(0.33)	neutral(0.024)	NULL
ZCCHC2	54877	genome.wustl.edu	37	18	60242410	60242410	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017742.4	+1	validated	p.Y1032	1.000	94	0%	53	34%	14	42.8%	-	-	-	NULL
PHLPP1	23239	genome.wustl.edu	37	18	60527705	60527705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194449.2	+1	validated	p.C134Y	1.000	158	0%	92	33.7%	8	37.5%	benign(0.031)	tolerated(0.12)	neutral(0.262)	superfamily_L domain-like
PHLPP1	23239	genome.wustl.edu	37	18	60630707	60630707	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194449.2	+1	validated	e14+2	1.000	73	0%	51	19.6%	0	-	-	-	-	-
VPS4B	9525	genome.wustl.edu	37	18	61067300	61067300	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004869.3	-1	reviewed	p.E257D	1.000	149	0%	78	29.5%	39	41%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
SERPINB2	5055	genome.wustl.edu	37	18	61558779	61558779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143818.1	+1	validated	p.S34I	1.000	151	0%	83	27.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
HMSD	284293	genome.wustl.edu	37	18	61620716	61620716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123366.1	+1	validated	p.M9I	1.000	127	0%	66	31.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Serpin,superfamily_Serpins
CDH7	1005	genome.wustl.edu	37	18	63511156	63511156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.V364M	1.000	211	0%	191	25.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH7	1005	genome.wustl.edu	37	18	63525076	63525076	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.D420	1.000	403	0%	276	26.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH7	1005	genome.wustl.edu	37	18	63547731	63547731	+	Silent	SNP	C	C	T	rs180736216	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.Y653	0.214	123	0%	86	34.9%	0	-	-	-	-	HMMPfam_Cadherin_C
DOK6	220164	genome.wustl.edu	37	18	67425047	67425047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152721.5	+1	validated	p.R265H	0.997	201	1%	158	34.8%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TIMM21	29090	genome.wustl.edu	37	18	71822421	71822421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014177.2	+1	validated	p.L115I	1.000	209	0%	129	24.8%	28	53.5%	probably_damaging(0.975)	tolerated(0.31)	neutral(0.444)	HMMPfam_TIM21
CYB5A	1528	genome.wustl.edu	37	18	71920858	71920858	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148923.2	-1	validated	p.A122	0.000	45	0%	28	28.6%	168	41%	-	-	-	NULL
CNDP1	84735	genome.wustl.edu	37	18	72226605	72226605	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032649.5	+1	reviewed	p.V67	0.417	116	0%	45	26.7%	0	-	-	-	-	superfamily_Zn-dependent exopeptidases
TSHZ1	10194	genome.wustl.edu	37	18	72998643	72998643	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005786.4	+1	reviewed	p.T382	0.501	61	0%	44	29.5%	77	48%	-	-	-	HMMSmart_SM00355
TSHZ1	10194	genome.wustl.edu	37	18	72998832	72998832	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005786.4	+1	reviewed	p.P445	0.018	69	0%	38	34.2%	35	54.2%	-	-	-	NULL
ZNF236	7776	genome.wustl.edu	37	18	74592114	74592114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.A342S	0.068	128	0%	81	23.5%	2	0%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
ZNF236	7776	genome.wustl.edu	37	18	74625794	74625794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007345.3	+1	validated	p.L999F	1.000	311	0%	179	26.3%	3	33.3%	possibly_damaging(0.807)	tolerated(0.18)	neutral(0.360)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MBP	4155	genome.wustl.edu	37	18	74728960	74728960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025101.1	-1	reviewed	p.A135V	1.000	143	0%	50	22%	17	35.2%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
ATP9B	374868	genome.wustl.edu	37	18	76870408	76870408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198531.3	+1	validated	p.R116H	1.000	310	0%	231	27.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFATC1	4772	genome.wustl.edu	37	18	77170429	77170429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.V39I	0.000	57	0%	40	20%	1	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
NFATC1	4772	genome.wustl.edu	37	18	77211760	77211760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.L603P	0.994	43	0%	23	39.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
NFATC1	4772	genome.wustl.edu	37	18	77287539	77287539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.I919L	0.960	150	0%	69	20.3%	1	0%	benign(0)	tolerated(0.91)	-	NULL
CTDP1	9150	genome.wustl.edu	37	18	77477958	77477958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004715.3	+1	reviewed	p.R787W	0.012	58	0%	21	28.6%	15	26.6%	possibly_damaging(0.943)	deleterious(0.03)	deleterious(0.752)	HMMPfam_FCP1_C
RBFA	79863	genome.wustl.edu	37	18	77796710	77796710	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024805.2	+1	validated	p.S67	0.998	66	0%	38	34.2%	8	0%	-	-	-	NULL
RBFA	79863	genome.wustl.edu	37	18	77805799	77805799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024805.2	+1	validated	p.G226S	0.001	88	0%	42	14.3%	8	25%	possibly_damaging(0.452)	tolerated(0.77)	neutral(0.149)	NULL
ADNP2	22850	genome.wustl.edu	37	18	77893997	77893997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014913.3	+1	validated	p.I234S	0.613	229	0%	140	28.6%	28	71.4%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
THEG	51298	genome.wustl.edu	37	19	371249	371249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016585.3	-1	reviewed	p.A237T	0.004	41	0%	28	28.6%	0	-	benign(0.001)	tolerated(1)	-	HMMSmart_SM00705
ARID3A	1820	genome.wustl.edu	37	19	964846	964846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005224.2	+1	reviewed	p.L322M	1.000	22	0%	12	50%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ARID,HMMSmart_BRIGHT,superfamily_ARID
UQCR11	10975	genome.wustl.edu	37	19	1599477	1599477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006830.3	-1	reviewed	p.V45I	1.000	37	0%	22	18.2%	328	20.1%	possibly_damaging(0.783)	deleterious(0.02)	deleterious(0.676)	HMMPfam_UCR_6-4kD,superfamily_Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
CSNK1G2-AS1	255193	genome.wustl.edu	37	19	1953900	1953900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314315	-1	known	p.R79Q	0.005	41	0%	28	42.9%	1	0%	-	-	-	NULL
LMNB2	84823	genome.wustl.edu	37	19	2431617	2431617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032737.2	-1	reviewed	p.R564C	0.017	113	0%	53	22.6%	26	53.8%	probably_damaging(0.968)	deleterious(0.04)	deleterious(0.759)	superfamily_SSF74853
ZNF554	115196	genome.wustl.edu	37	19	2834161	2834161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102651.1	+1	validated	p.A310S	0.001	126	0.8%	66	31.8%	1	0%	benign(0.417)	tolerated(0.57)	neutral(0.141)	NULL
ZNF57	126295	genome.wustl.edu	37	19	2918071	2918071	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173480.2	+1	validated	p.T484	0.061	249	0.4%	135	28.1%	6	83.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NCLN	56926	genome.wustl.edu	37	19	3198836	3198836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020170.3	+1	validated	p.G213R	1.000	19	0%	11	45.5%	97	32.9%	possibly_damaging(0.91)	tolerated(0.53)	neutral(0.370)	superfamily_Zn-dependent exopeptidases
TJP3	27134	genome.wustl.edu	37	19	3733786	3733786	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.N270	0.002	284	0%	137	29.2%	77	45.4%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
TJP3	27134	genome.wustl.edu	37	19	3747912	3747912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.A848T	0.896	13	0%	10	60%	78	35.8%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
ATCAY	85300	genome.wustl.edu	37	19	3907778	3907778	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033064.4	+1	reviewed	p.A135	0.012	55	0%	30	26.7%	0	-	-	-	-	NULL
STAP2	55620	genome.wustl.edu	37	19	4325442	4325442	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017720.2	-1	reviewed	p.Y310	0.891	247	0%	106	22.6%	18	11.1%	-	-	-	NULL
SH3GL1	6455	genome.wustl.edu	37	19	4363446	4363446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003025.2	-1	provisional	p.A217T	0.960	15	0.000	9	0.444	136	40.4%	benign(0.057)	tolerated(0.35)	neutral(0.024)	HMMPfam_BAR,HMMSmart_SM00721
DPP9	91039	genome.wustl.edu	37	19	4694769	4694769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.N474D	1.000	29	0%	10	50%	40	35%	possibly_damaging(0.49)	deleterious(0.03)	deleterious(0.527)	HMMPfam_DPPIV_N,superfamily_SSF82171
PLIN3	10226	genome.wustl.edu	37	19	4847789	4847789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005817.4	-1	reviewed	p.A250T	0.974	46	0%	17	41.2%	138	39.1%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain
UHRF1	29128	genome.wustl.edu	37	19	4929334	4929334	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398240	+1	known	p.E98A	1.000	63	0%	28	25%	22	40.9%	benign(0.124)	tolerated(0.25)	neutral(0.047)	superfamily_Ubiquitin-like
KDM4B	23030	genome.wustl.edu	37	19	5032994	5032994	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015015.2	+1	validated	p.Y31	0.986	87	0%	37	29.7%	26	38.4%	-	-	-	HMMPfam_JmjN,HMMSmart_SM00545
LOC100130109	100130109	genome.wustl.edu	37	19	5576680	5576680	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726381.2	-1	model	p.V90	0.957	229	0.4%	128	10.9%	0	-	-	-	-	superfamily_Sm-like ribonucleoproteins
DUS3L	56931	genome.wustl.edu	37	19	5790184	5790184	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020175.2	-1	validated	p.T87	0.000	78	0%	45	24.4%	28	35.7%	-	-	-	NULL
FUT6	2528	genome.wustl.edu	37	19	5831617	5831617	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000150.2	-1	reviewed	p.W321*	1.000	112	0%	47	25.5%	2	0%	-	-	-	HMMPfam_Glyco_transf_10
FUT6	2528	genome.wustl.edu	37	19	5832103	5832103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000150.2	-1	reviewed	p.R159H	0.980	48	0%	25	24%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Glyco_transf_10
FUT3	2525	genome.wustl.edu	37	19	5844228	5844228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000149.3	-1	reviewed	p.R208H	0.033	145	0%	71	25.4%	3	0%	benign(0.162)	tolerated(0.07)	neutral(0.334)	HMMPfam_Glyco_transf_10
ACSBG2	81616	genome.wustl.edu	37	19	6156482	6156482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030924.3	+1	validated	p.V143I	0.995	486	0%	279	29%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_AMP-binding,superfamily_SSF56801
ACSBG2	81616	genome.wustl.edu	37	19	6177296	6177296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030924.3	+1	validated	p.E265D	0.655	113	0.9%	68	32.4%	0	-	benign(0.008)	tolerated(0.2)	neutral(0.049)	HMMPfam_AMP-binding,superfamily_SSF56801
GTF2F1	2962	genome.wustl.edu	37	19	6381378	6381378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002096.2	-1	validated	p.R337H	0.999	44	0%	27	33.3%	115	40.8%	possibly_damaging(0.945)	tolerated(0.05)	deleterious(0.735)	HMMPfam_TFIIF_alpha
GTF2F1	2962	genome.wustl.edu	37	19	6387444	6387444	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002096.2	-1	validated	p.R151	1.000	61	0%	44	25%	72	55.5%	-	-	-	HMMPfam_TFIIF_alpha,superfamily_Rap30/74 interaction domains
KHSRP	8570	genome.wustl.edu	37	19	6416628	6416628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003685.2	-1	validated	p.T454M	1.000	35	0%	17	58.8%	170	48.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
SLC25A23	79085	genome.wustl.edu	37	19	6452478	6452478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024103.2	-1	validated	p.R306W	0.906	32	0%	19	42.1%	59	42.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
CRB3	92359	genome.wustl.edu	37	19	6465593	6465593	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174881.2	+1	reviewed	p.L40	0.001	360	0%	196	11.7%	52	23%	-	-	-	NULL
TUBB4A	10382	genome.wustl.edu	37	19	6495667	6495667	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006087.2	-1	provisional	p.Y281*	1.000	189	0%	119	34.5%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
C3	718	genome.wustl.edu	37	19	6678433	6678433	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.S1555Y	0.000	168	0%	103	30.1%	234	0.8%	possibly_damaging(0.876)	deleterious(0.03)	deleterious(0.706)	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
C3	718	genome.wustl.edu	37	19	6686258	6686258	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.N1229	0.009	730	0.1%	394	29.4%	66	0%	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
C3	718	genome.wustl.edu	37	19	6694526	6694526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.A1024T	1.000	139	0%	86	26.7%	46	2.1%	possibly_damaging(0.642)	deleterious(0.01)	deleterious(0.631)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl
TRIP10	9322	genome.wustl.edu	37	19	6743220	6743220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004240.2	+1	validated	p.R121W	0.597	80	0%	54	18.5%	24	29.1%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
VAV1	7409	genome.wustl.edu	37	19	6833918	6833918	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	e19-1	0.996	321	0%	202	13.9%	0	-	-	-	-	-
INSR	3643	genome.wustl.edu	37	19	7120729	7120729	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.T1187	0.933	198	0%	106	25.5%	6	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
INSR	3643	genome.wustl.edu	37	19	7166218	7166218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000208.2	-1	reviewed	p.R603H	0.998	260	0%	181	28.7%	4	0%	benign(0.003)	tolerated(0.45)	neutral(0.012)	superfamily_Fibronectin type III
ZNF358	140467	genome.wustl.edu	37	19	7585210	7585210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018083.4	+1	validated	p.A361V	0.702	44	0%	29	37.9%	68	44.1%	possibly_damaging(0.939)	tolerated(0.11)	deleterious(0.656)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MCOLN1	57192	genome.wustl.edu	37	19	7591758	7591758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020533.2	+1	reviewed	p.G173C	0.999	91	0%	38	39.5%	27	3.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MCOLN1	57192	genome.wustl.edu	37	19	7593142	7593142	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020533.2	+1	reviewed	p.H292	0.707	44	0%	32	34.4%	23	17.3%	-	-	-	NULL
XAB2	56949	genome.wustl.edu	37	19	7691141	7691141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020196.2	-1	validated	p.A180T	1.000	69	0%	28	25%	44	40.9%	benign(0.047)	tolerated(0.24)	neutral(0.041)	superfamily_SSF48452
CD209	30835	genome.wustl.edu	37	19	7807918	7807918	+	RNA	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026692.1	-1	reviewed	NULL	0.001	675	0%	413	29.1%	0	-	-	-	-	-
CD209	30835	genome.wustl.edu	37	19	7810570	7810570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021155.3	-1	reviewed	p.Q194H	0.002	1259	0%	625	21.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7834043	7834043	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026707.1	+1	reviewed	NULL	0.000	44	0%	27	18.5%	0	-	-	-	-	-
LRRC8E	80131	genome.wustl.edu	37	19	7964276	7964276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025061.3	+1	validated	p.T290M	0.942	42	4.8%	19	36.8%	13	23%	benign(0.035)	tolerated(0.08)	neutral(0.302)	NULL
SNAPC2	6618	genome.wustl.edu	37	19	7986379	7986379	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003083.3	+1	reviewed	p.G85	0.012	52	0%	25	20%	18	55.5%	-	-	-	NULL
TIMM44	10469	genome.wustl.edu	37	19	7999096	7999096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006351.3	-1	validated	p.L141I	0.349	54	0%	31	22.6%	35	51.4%	benign(0.001)	tolerated(0.43)	neutral(0.013)	NULL
FBN3	84467	genome.wustl.edu	37	19	8174532	8174532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.S1480I	0.998	264	0%	125	30.4%	0	-	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
HNRNPM	4670	genome.wustl.edu	37	19	8550678	8550678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005968.3	+1	validated	p.R456C	0.996	102	0%	42	23.8%	333	3.6%	benign(0.028)	deleterious(0)	neutral(0.446)	NULL
MYO1F	4542	genome.wustl.edu	37	19	8595163	8595163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.R749W	1.000	415	0.2%	226	35%	8	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Myosin_TH1
ADAMTS10	81794	genome.wustl.edu	37	19	8665853	8665853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030957.2	-1	reviewed	p.R257C	1.000	237	0%	151	30.5%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Reprolysin,superfamily_SSF55486
OR2Z1	284383	genome.wustl.edu	37	19	8842035	8842035	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004699.1	+1	provisional	p.A215	0.000	226	0%	125	15.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2Z1	284383	genome.wustl.edu	37	19	8842119	8842119	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004699.1	+1	provisional	p.S243	0.006	200	0.5%	126	11.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MBD3L1	85509	genome.wustl.edu	37	19	8953616	8953616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145208.2	+1	reviewed	p.D88N	0.111	367	0%	199	25.6%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
MUC16	94025	genome.wustl.edu	37	19	9056889	9056889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.T10186I	0.000	129	0%	98	25.5%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9073678	9073678	+	Missense_Mutation	SNP	C	C	A	rs115311327	byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.D4590Y	0.000	353	0%	260	29.2%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9074765	9074765	+	Missense_Mutation	SNP	C	C	A	rs77727786	byCluster;byFrequency;by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E4227D	0.000	399	0.3%	304	28.3%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9077463	9077463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.G3328V	0.000	744	0%	601	11%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9077866	9077866	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	e3-1	0.719	601	0%	420	30%	0	-	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	9082412	9082412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.A3135T	0.020	339	0.3%	245	26.9%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9083333	9083333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.A2828S	0.092	150	0%	109	27.5%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9085140	9085140	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.G2225	0.268	266	0%	135	25.2%	0	-	-	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204662	9204662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004456.1	+1	provisional	p.V248I	0.222	412	0.2%	205	29.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G2	390882	genome.wustl.edu	37	19	9213424	9213424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005193.1	-1	provisional	p.L187M	0.006	267	0%	155	24.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR7G2	390882	genome.wustl.edu	37	19	9213832	9213832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005193.1	-1	provisional	p.L51M	0.015	363	0%	252	29.4%	0	-	possibly_damaging(0.51)	tolerated(0.11)	neutral(0.443)	superfamily_Family A G protein-coupled receptor-like
ZNF317	57693	genome.wustl.edu	37	19	9271023	9271023	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020933.3	+1	provisional	p.S234	0.000	298	0%	165	25.5%	27	48.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OR7D2	162998	genome.wustl.edu	37	19	9296624	9296624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175883.1	+1	provisional	p.H56R	1.000	524	0.2%	349	27.5%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000188314	0	genome.wustl.edu	37	19	9346789	9346789	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344049	+1	known	p.Y219N	0.000	145	0%	105	11.4%	0	-	unknown(0)	deleterious(0)	-	NULL
OR7E24	26648	genome.wustl.edu	37	19	9361856	9361856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079935.1	+1	provisional	p.A46V	0.000	206	0%	165	36.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Family A G protein-coupled receptor-like
ZNF560	147741	genome.wustl.edu	37	19	9578582	9578582	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.P347	0.000	362	0%	199	12.1%	0	-	-	-	-	superfamily_SSF57667
ZNF562	54811	genome.wustl.edu	37	19	9768737	9768737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130031.1	-1	validated	p.K63fs	0.032	-	-	-	-	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
UBL5	59286	genome.wustl.edu	37	19	9939272	9939272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048241.1	+1	validated	p.D21N	0.985	166	0%	84	20.2%	439	39.6%	benign(0.003)	tolerated(0.07)	neutral(0.319)	superfamily_Ubiquitin-like
C19orf66	55337	genome.wustl.edu	37	19	10197971	10197971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018381.2	+1	validated	p.A64T	0.962	194	0%	72	26.4%	13	15.3%	probably_damaging(0.959)	tolerated(0.53)	neutral(0.410)	NULL
P2RY11	5032	genome.wustl.edu	37	19	10224767	10224767	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.L160	0.885	37	0%	20	25%	23	56.5%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
P2RY11	5032	genome.wustl.edu	37	19	10225023	10225023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.R245H	0.005	50	0%	33	42.4%	24	33.3%	benign(0.097)	deleterious(0.01)	neutral(0.413)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNMT1	1786	genome.wustl.edu	37	19	10257086	10257086	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130823.1	-1	reviewed	p.N945	0.229	65	0%	28	17.9%	54	31.4%	-	-	-	NULL
ICAM1	3383	genome.wustl.edu	37	19	10394938	10394938	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000201.2	+1	reviewed	p.T289	0.003	72	0%	42	26.2%	15	0%	-	-	-	superfamily_Immunoglobulin
TYK2	7297	genome.wustl.edu	37	19	10475711	10475711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003331.4	-1	reviewed	p.S342N	0.000	33	0%	18	38.9%	26	53.8%	benign(0.003)	tolerated(0.56)	neutral(0.006)	NULL
PDE4A	5141	genome.wustl.edu	37	19	10574519	10574519	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111307.1	+1	validated	p.P598	0.925	122	0.8%	62	30.6%	2	0%	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
PDE4A	5141	genome.wustl.edu	37	19	10578110	10578110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111307.1	+1	validated	p.R825M	1.000	152	0%	78	29.5%	4	25%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
KRI1	65095	genome.wustl.edu	37	19	10668655	10668655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023008.3	-1	validated	p.N457S	1.000	38	0%	28	25%	22	40.9%	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_Kri1
KRI1	65095	genome.wustl.edu	37	19	10671739	10671739	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023008.3	-1	validated	p.D207	0.995	80	0%	56	19.6%	15	13.3%	-	-	-	NULL
QTRT1	81890	genome.wustl.edu	37	19	10823435	10823435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031209.2	+1	validated	p.R288H	1.000	105	1%	46	10.9%	79	43%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGT,superfamily_tRNA_ribo_trans
DNM2	1785	genome.wustl.edu	37	19	10906804	10906804	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005360.1	+1	reviewed	p.E422*	1.000	349	0%	183	27.9%	48	6.2%	-	-	-	HMMPfam_Dynamin_M
DNM2	1785	genome.wustl.edu	37	19	10935828	10935828	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005360.1	+1	reviewed	p.Y663	0.895	125	0.8%	48	22.9%	109	57.7%	-	-	-	HMMPfam_GED,HMMSmart_SM00302
CARM1	10498	genome.wustl.edu	37	19	11031118	11031118	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199141.1	+1	validated	p.T401	0.151	57	0%	22	18.2%	84	45.2%	-	-	-	superfamily_SSF53335
YIPF2	78992	genome.wustl.edu	37	19	11034825	11034825	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024029.3	-1	provisional	p.V137	0.830	23	0%	16	43.8%	173	57.2%	-	-	-	HMMPfam_Yip1
LDLR	3949	genome.wustl.edu	37	19	11240348	11240348	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000527.3	+1	reviewed	e17+2	1.000	63	1.6%	29	20.7%	10	100%	-	-	-	-
DOCK6	57572	genome.wustl.edu	37	19	11353808	11353808	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.D469	0.973	116	0%	48	39.6%	0	-	-	-	-	NULL
EPOR	2057	genome.wustl.edu	37	19	11489212	11489212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000121.3	-1	reviewed	p.E325D	0.999	86	0%	47	21.3%	12	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZNF653	115950	genome.wustl.edu	37	19	11598310	11598310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138783.3	-1	validated	p.A323V	0.997	83	0%	37	10.8%	3	66.6%	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
ECSIT	51295	genome.wustl.edu	37	19	11617211	11617211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016581.3	-1	validated	p.A362T	1.000	60	0%	20	25%	84	41.6%	benign(0.036)	tolerated(1)	neutral(0.002)	NULL
ACP5	54	genome.wustl.edu	37	19	11687356	11687356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111034.1	-1	reviewed	p.T146I	0.710	64	0%	31	32.3%	33	0%	benign(0.142)	deleterious(0.01)	neutral(0.418)	HMMPfam_Metallophos,superfamily_SSF56300
ACP5	54	genome.wustl.edu	37	19	11687972	11687972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111034.1	-1	reviewed	p.I54T	0.998	41	0%	39	35.9%	29	0%	possibly_damaging(0.486)	tolerated(0.1)	neutral(0.448)	HMMPfam_Metallophos,superfamily_SSF56300
ZNF823	55552	genome.wustl.edu	37	19	11833581	11833581	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080493.2	-1	validated	p.A256	0.949	365	0.3%	250	10%	9	22.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF700	90592	genome.wustl.edu	37	19	12061006	12061006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144566.1	+1	provisional	p.A723T	0.003	153	0%	94	41.5%	12	50%	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF763	284390	genome.wustl.edu	37	19	12089257	12089257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012753.1	+1	validated	p.A176V	0.000	520	0%	302	25.2%	1	100%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF20	7568	genome.wustl.edu	37	19	12243471	12243471	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021143.2	-1	validated	p.Q510H	0.070	710	0.1%	424	32.8%	14	42.8%	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF44	51710	genome.wustl.edu	37	19	12383583	12383583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016264.3	-1	validated	p.R496M	0.000	169	0%	106	20.8%	6	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF563	147837	genome.wustl.edu	37	19	12430265	12430265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145276.2	-1	validated	p.G192C	0.046	555	0.2%	340	28.2%	1	100%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ZNF442	79973	genome.wustl.edu	37	19	12474374	12474374	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030824.2	-1	validated	p.K24	0.020	339	0%	217	26.7%	0	-	-	-	-	superfamily_Krueppel-associated_box
ZNF799	90576	genome.wustl.edu	37	19	12502775	12502775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080821.1	-1	validated	p.R146H	0.000	711	0.1%	418	12.9%	2	0%	possibly_damaging(0.709)	tolerated(0.3)	neutral(0.285)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF443	10224	genome.wustl.edu	37	19	12542598	12542598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005815.4	-1	validated	p.P130S	0.481	521	0.2%	313	29.7%	9	77.7%	benign(0.012)	tolerated(0.35)	neutral(0.021)	NULL
ZNF709	163051	genome.wustl.edu	37	19	12576371	12576371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152601.3	-1	validated	p.R122K	0.000	209	0%	129	18.6%	1	0%	benign(0)	tolerated(0.15)	neutral(0.241)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF564	163050	genome.wustl.edu	37	19	12637852	12637852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144976.3	-1	validated	p.R357M	0.135	479	0%	261	32.6%	9	22.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAN2B1	4125	genome.wustl.edu	37	19	12763022	12763022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000528.3	-1	reviewed	p.P664H	1.000	213	0%	83	25.3%	60	23.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
HOOK2	29911	genome.wustl.edu	37	19	12883696	12883696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013312.2	-1	validated	p.L96I	0.371	281	0%	174	15.5%	19	10.5%	possibly_damaging(0.492)	tolerated(0.8)	neutral(0.165)	HMMPfam_HOOK
RNASEH2A	10535	genome.wustl.edu	37	19	12924190	12924190	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006397.2	+1	reviewed	p.S270	0.997	177	0%	111	27%	58	41.3%	-	-	-	NULL
MAST1	22983	genome.wustl.edu	37	19	12962784	12962784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.V271I	0.975	39	0%	34	35.3%	2	50%	benign(0.001)	tolerated(0.82)	neutral(0.001)	HMMPfam_DUF1908
DNASE2	1777	genome.wustl.edu	37	19	12989291	12989291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001375.2	-1	reviewed	p.H205R	0.673	126	0%	82	22%	152	40.7%	possibly_damaging(0.667)	tolerated(0.84)	neutral(0.236)	HMMPfam_DNase_II
FARSA	2193	genome.wustl.edu	37	19	13035619	13035619	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004461.2	-1	validated	p.K343	0.996	98	0%	37	27%	151	40.3%	-	-	-	HMMPfam_tRNA-synt_2d,superfamily_Class II aaRS and biotin synthetases
NACC1	112939	genome.wustl.edu	37	19	13248998	13248998	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052876.2	+1	validated	p.S454	0.982	89	0%	52	38.5%	99	38.3%	-	-	-	HMMPfam_BEN
STX10	8677	genome.wustl.edu	37	19	13255247	13255247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003765.1	-1	provisional	p.L243F	0.285	33	0.000	8	0.625	136	43.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
C19orf57	79173	genome.wustl.edu	37	19	14000312	14000312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024323.3	-1	predicted	p.G453C	0.000	64	0%	29	27.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IL27RA	9466	genome.wustl.edu	37	19	14163090	14163090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004843.2	+1	reviewed	p.Q633H	0.000	25	0%	14	28.6%	17	35.2%	probably_damaging(0.995)	tolerated(0.09)	deleterious(0.754)	NULL
PRKACA	5566	genome.wustl.edu	37	19	14208185	14208185	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002730.3	-1	reviewed	p.I251	0.993	45	0%	29	41.4%	64	42.1%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PKN1	5585	genome.wustl.edu	37	19	14580617	14580617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.I742T	0.997	252	0%	116	25.9%	63	15.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
EMR3	84658	genome.wustl.edu	37	19	14740966	14740966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032571.3	-1	reviewed	p.C566Y	0.013	184	0%	131	12.2%	0	-	possibly_damaging(0.908)	deleterious(0.03)	deleterious(0.726)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
ZNF333	84449	genome.wustl.edu	37	19	14829101	14829101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032433.2	+1	validated	p.S321I	0.000	735	0.1%	410	14.4%	3	33.3%	benign(0.288)	tolerated(0.41)	neutral(0.103)	NULL
EMR2	30817	genome.wustl.edu	37	19	14863198	14863198	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013447.2	-1	reviewed	p.L577	0.830	51	0%	34	38.2%	1	0%	-	-	-	HMMPfam_7tm_2
LOC100129118	100129118	genome.wustl.edu	37	19	14903322	14903322	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726779.2	+1	model	p.A65S	1.000	283	0%	149	25.5%	0	-	-	-	-	NULL
SLC1A6	6511	genome.wustl.edu	37	19	15083559	15083559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005071.1	-1	provisional	p.R55Q	0.998	51	0%	26	19.2%	0	-	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	NULL
CCDC105	126402	genome.wustl.edu	37	19	15132512	15132512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173482.2	+1	validated	p.G376S	0.185	132	0%	51	43.1%	0	-	probably_damaging(0.969)	tolerated(0.07)	deleterious(0.730)	NULL
CASP14	23581	genome.wustl.edu	37	19	15166067	15166067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012114.1	+1	reviewed	p.V168I	0.095	406	0%	256	25.4%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
AKAP8	10270	genome.wustl.edu	37	19	15487824	15487824	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005858.2	-1	reviewed	p.G7	0.994	22	0%	11	45.5%	5	20%	-	-	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15538196	15538196	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.T226	0.405	27	0%	11	45.5%	46	43.4%	-	-	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15558994	15558994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.G42D	0.999	70	0%	27	33.3%	0	-	unknown(0)	tolerated(1)	-	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15654833	15654833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173483.3	+1	reviewed	p.T331A	1.000	165	0.6%	116	24.1%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_p450,superfamily_Cytochrome_P450
LOC100287986	100287986	genome.wustl.edu	37	19	15686427	15686427	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343618.1	-1	model	p.L724I	0.000	41	0%	17	23.5%	0	-	-	-	-	NULL
LOC100287986	100287986	genome.wustl.edu	37	19	15739212	15739212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343618.1	-1	model	p.T37K	0.806	145	0%	76	23.7%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
CYP4F12	66002	genome.wustl.edu	37	19	15795879	15795879	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023944.2	+1	reviewed	p.G329	0.983	253	0%	107	34.6%	1	0%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
OR10H5	284433	genome.wustl.edu	37	19	15905068	15905068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004466.1	+1	provisional	p.E70D	0.987	518	0%	344	31.7%	0	-	probably_damaging(0.987)	tolerated(0.16)	deleterious(0.496)	HMMPfam_7tm_1,superfamily_SSF81321
CYP4F2	8529	genome.wustl.edu	37	19	16001168	16001168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082.3	-1	reviewed	p.D201N	1.000	505	0.2%	261	26.8%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_p450,superfamily_Cytochrome_P450
EPS15L1	58513	genome.wustl.edu	37	19	16495985	16495985	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021235.1	-1	provisional	p.S734	0.999	129	0%	55	32.7%	21	42.8%	-	-	-	NULL
NWD1	284434	genome.wustl.edu	37	19	16918536	16918536	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.C1157	1.000	133	0%	65	18.5%	3	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
NWD1	284434	genome.wustl.edu	37	19	16918920	16918920	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.R1285	0.175	97	0%	50	28%	4	0%	-	-	-	superfamily_WD40 repeat-like
SIN3B	23309	genome.wustl.edu	37	19	16973290	16973290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015260.1	+1	provisional	p.R396C	1.000	89	0%	50	40%	11	54.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HDAC_interact,HMMSmart_SM00761
SIN3B	23309	genome.wustl.edu	37	19	16974595	16974595	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015260.1	+1	provisional	p.D489	0.792	82	0%	42	21.4%	11	36.3%	-	-	-	HMMPfam_HDAC_interact,HMMSmart_SM00761
CPAMD8	27151	genome.wustl.edu	37	19	17056376	17056376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015692.2	-1	validated	p.R973C	0.987	127	0%	80	27.5%	0	-	benign(0.08)	tolerated(0.08)	neutral(0.305)	NULL
HAUS8	93323	genome.wustl.edu	37	19	17160706	17160707	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033417.1	-1	validated	p.R404fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ANKLE1	126549	genome.wustl.edu	37	19	17394343	17394343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152363.4	+1	validated	p.A257V	0.000	69	1.4%	29	27.6%	5	40%	benign(0.039)	deleterious(0.01)	neutral(0.408)	NULL
ABHD8	79575	genome.wustl.edu	37	19	17411871	17411871	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024527.4	-1	validated	p.G185	0.275	71	0%	42	33.3%	22	31.8%	-	-	-	superfamily_alpha/beta-Hydrolases
ANO8	57719	genome.wustl.edu	37	19	17441994	17441994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.I245T	1.000	102	0%	51	29.4%	13	38.4%	possibly_damaging(0.814)	deleterious(0.01)	deleterious(0.713)	NULL
GTPBP3	84705	genome.wustl.edu	37	19	17449869	17449869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133644.2	+1	validated	p.P233H	0.000	90	0%	51	27.5%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	superfamily_SSF52540
PLVAP	83483	genome.wustl.edu	37	19	17476349	17476349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031310.1	-1	provisional	p.L309M	0.972	30	0%	25	24%	32	0%	probably_damaging(0.99)	tolerated(0.12)	deleterious(0.702)	HMMPfam_PV-1
PLVAP	83483	genome.wustl.edu	37	19	17476925	17476925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031310.1	-1	provisional	p.M150T	0.000	81	0%	43	16.3%	19	0%	benign(0)	tolerated(1)	-	HMMPfam_PV-1
UNC13A	23025	genome.wustl.edu	37	19	17751383	17751383	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.Y996	0.982	6	0.000	12	0.583	0	-	-	-	-	NULL
UNC13A	23025	genome.wustl.edu	37	19	17785552	17785552	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.T110	0.155	188	0%	107	27.1%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MAP1S	55201	genome.wustl.edu	37	19	17835911	17835911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018174.4	+1	validated	p.G119	1.000	254	0%	126	27%	44	52.2%	-	-	-	NULL
FCHO1	23149	genome.wustl.edu	37	19	17883492	17883492	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015122.2	+1	validated	p.S244	1.000	65	0%	39	20.5%	2	0%	-	-	-	NULL
B3GNT3	10331	genome.wustl.edu	37	19	17922396	17922396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014256.3	+1	reviewed	p.W195L	1.000	41	0%	31	38.7%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
JAK3	3718	genome.wustl.edu	37	19	17941372	17941372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000215.3	-1	reviewed	p.S1012R	1.000	31	0%	14	28.6%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
JAK3	3718	genome.wustl.edu	37	19	17943411	17943411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000215.3	-1	reviewed	p.R866M	0.977	283	0%	146	28.8%	3	0%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
IL12RB1	3594	genome.wustl.edu	37	19	18177481	18177481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.V452I	0.005	269	0%	132	31.8%	6	0%	possibly_damaging(0.744)	deleterious(0)	deleterious(0.718)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
KIAA1683	80726	genome.wustl.edu	37	19	18377130	18377130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.P407L	0.000	72	0%	33	15.2%	0	-	unknown(0)	deleterious(0.03)	-	NULL
KIAA1683	80726	genome.wustl.edu	37	19	18377402	18377402	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.G316	0.001	110	0%	63	34.9%	0	-	-	-	-	NULL
ISYNA1	51477	genome.wustl.edu	37	19	18546942	18546942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016368.4	-1	validated	p.A292V	0.994	27	0%	11	36.4%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_5,superfamily_NAD(P)-binding Rossmann-fold domains
ELL	8178	genome.wustl.edu	37	19	18572619	18572619	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006532.3	-1	validated	p.D171	0.001	66	0%	34	20.6%	15	26.6%	-	-	-	HMMPfam_ELL
FKBP8	23770	genome.wustl.edu	37	19	18650229	18650229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012181.3	-1	reviewed	p.T168M	0.998	89	0%	42	35.7%	272	34.9%	possibly_damaging(0.924)	tolerated(0.07)	deleterious(0.692)	HMMPfam_FKBP_C,superfamily_SSF54534
UPF1	5976	genome.wustl.edu	37	19	18963850	18963850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.A343T	1.000	143	0%	69	13%	52	19.2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
UPF1	5976	genome.wustl.edu	37	19	18974273	18974273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.P876L	0.999	154	0.6%	60	23.3%	82	43.9%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	superfamily_SSF52540
SUGP2	10147	genome.wustl.edu	37	19	19120964	19120964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017392.3	-1	reviewed	p.R680W	0.979	150	0%	69	33.3%	28	42.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
NCAN	1463	genome.wustl.edu	37	19	19356196	19356196	+	Silent	SNP	G	G	A	rs149217870	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004386.2	+1	validated	p.A1189	0.002	83	0%	56	16.1%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
PBX4	80714	genome.wustl.edu	37	19	19710156	19710156	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025245.1	-1	reviewed	p.C46	1.000	62	0%	43	27.9%	0	-	-	-	-	HMMPfam_PBC
LPAR2	9170	genome.wustl.edu	37	19	19738063	19738063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004720.5	-1	reviewed	p.E11K	0.999	80	0%	41	24.4%	27	44.4%	benign(0.009)	tolerated(0.2)	neutral(0.050)	superfamily_SSF81321
GMIP	51291	genome.wustl.edu	37	19	19746268	19746268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016573.2	-1	reviewed	p.R506C	0.991	75	0%	38	26.3%	28	39.2%	possibly_damaging(0.921)	deleterious(0)	deleterious(0.816)	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889
ZNF101	94039	genome.wustl.edu	37	19	19788768	19788768	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033204.2	+1	provisional	p.T33	0.438	243	0%	147	27.2%	5	40%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF101	94039	genome.wustl.edu	37	19	19789991	19789991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033204.2	+1	provisional	p.S65R	0.999	275	0%	135	25.9%	5	60%	benign(0.009)	tolerated(0.53)	neutral(0.008)	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790285	19790285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033204.2	+1	provisional	p.P163S	0.979	358	0%	177	21.5%	9	33.3%	benign(0.082)	deleterious(0.01)	neutral(0.412)	NULL
ENSG00000245381	0	genome.wustl.edu	37	19	20003568	20003568	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499171	-1	known	NULL	1.000	239	0%	157	15.9%	0	-	-	-	-	-
ZNF486	90649	genome.wustl.edu	37	19	20308335	20308335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052852.2	+1	provisional	p.G272	0.845	256	0%	172	32.6%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ENSG00000250063	0	genome.wustl.edu	37	19	20368478	20368478	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000512225	-1	novel	NULL	0.007	43	0%	19	26.3%	0	-	-	-	-	-
ZNF737	100129842	genome.wustl.edu	37	19	20736528	20736528	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343624.1	-1	model	p.N39	0.982	451	0%	322	27%	4	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF626	199777	genome.wustl.edu	37	19	20807152	20807152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076675.2	-1	validated	p.V511M	0.398	277	0.4%	237	30.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF626	199777	genome.wustl.edu	37	19	20807319	20807319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076675.2	-1	validated	p.C455Y	0.769	136	0%	79	24.1%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF430	80264	genome.wustl.edu	37	19	21216970	21216970	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025189.3	+1	validated	p.A101V	0.001	538	0%	334	27.5%	2	50%	benign(0.045)	tolerated(0.25)	neutral(0.040)	NULL
ZNF430	80264	genome.wustl.edu	37	19	21239469	21239469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025189.3	+1	validated	p.P119S	0.003	271	0.4%	167	10.8%	0	-	benign(0.31)	tolerated(0.2)	neutral(0.146)	NULL
ZNF431	170959	genome.wustl.edu	37	19	21349168	21349168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133473.2	+1	validated	p.E43*	0.645	504	0%	343	24.8%	5	0%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF708	7562	genome.wustl.edu	37	19	21476780	21476780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021269.2	-1	validated	p.H330Y	0.989	606	0%	415	28.2%	2	0%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC400682	400682	genome.wustl.edu	37	19	21838598	21838598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726878.1	+1	model	p.G108D	0.973	260	0%	148	26.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC400682	400682	genome.wustl.edu	37	19	21838727	21838727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726878.1	+1	model	p.S151N	0.003	173	0%	122	12.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF100	163227	genome.wustl.edu	37	19	21948578	21948578	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173531.3	-1	validated	p.R5M	0.012	185	0.5%	102	19.6%	6	0%	possibly_damaging(0.496)	deleterious(0.01)	deleterious(0.571)	NULL
ZNF43	7594	genome.wustl.edu	37	19	21992555	21992555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.P95H	0.004	361	0%	218	14.2%	9	11.1%	benign(0.014)	tolerated(0.44)	neutral(0.013)	NULL
ZNF208	7757	genome.wustl.edu	37	19	22154713	22154713	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.P913	0.000	611	0%	451	24.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22156777	22156777	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.F353	0.000	554	0%	412	16.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157048	22157048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.G263D	0.997	432	0.5%	336	26.8%	0	-	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF208	7757	genome.wustl.edu	37	19	22157323	22157323	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007153.3	-1	provisional	p.K171fs	0.025	-	-	-	-	-	-	-	-	-	NULL
ZNF257	113835	genome.wustl.edu	37	19	22271877	22271877	+	Missense_Mutation	SNP	G	G	A	rs189763118	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033468.2	+1	provisional	p.R442Q	0.000	271	0.7%	225	26.7%	0	-	benign(0.007)	tolerated(0.32)	neutral(0.024)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF729	100287226	genome.wustl.edu	37	19	22496477	22496477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357491	+1	known	p.M86I	0.000	69	0%	64	26.6%	0	-	benign(0.002)	tolerated(0.67)	neutral(0.003)	NULL
LOC100287226	100287226	genome.wustl.edu	37	19	22497963	22497963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343636.1	+1	model	p.K449E	0.137	451	0%	354	30.8%	0	-	possibly_damaging(0.478)	tolerated(0.11)	neutral(0.429)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22575196	22575196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098626.1	-1	validated	p.L281I	0.020	427	0.2%	334	6.3%	0	-	probably_damaging(0.997)	deleterious(0.03)	deleterious(0.831)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC440518	440518	genome.wustl.edu	37	19	22780094	22780094	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041921.2	+1	model	NULL	0.061	144	0%	81	13.6%	0	-	-	-	-	-
ZNF492	57615	genome.wustl.edu	37	19	22846953	22846953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020855.2	+1	validated	p.R161K	0.902	220	0%	144	27.1%	1	100%	benign(0)	tolerated(0.48)	neutral(0.011)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF492	57615	genome.wustl.edu	37	19	22847354	22847354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020855.2	+1	validated	p.T295P	0.000	465	0.2%	354	16.9%	3	33.3%	benign(0.157)	tolerated(0.28)	neutral(0.045)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22939158	22939158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.G987D	0.725	499	0%	331	24.5%	0	-	benign(0.05)	tolerated(0.1)	neutral(0.289)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22939428	22939428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.P915S	0.685	477	0%	326	30.1%	0	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	superfamily_SSF57667
ZNF99	7652	genome.wustl.edu	37	19	22940308	22940308	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080409.1	-1	provisional	p.S710	0.000	470	0%	351	31.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF728	388523	genome.wustl.edu	37	19	23171182	23171182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726961.1	-1	model	p.Q25H	0.058	689	0%	467	15.4%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF724P	440519	genome.wustl.edu	37	19	23406665	23406665	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418100	-1	known	p.G128*	0.078	148	0%	121	22.3%	3	66.6%	-	-	-	NULL
ZNF91	7644	genome.wustl.edu	37	19	23543224	23543224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003430.2	-1	validated	p.L853I	0.889	357	0%	240	26.7%	10	10%	benign(0.205)	deleterious(0.04)	neutral(0.369)	superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836427	23836427	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138330.2	-1	validated	p.S436	0.022	392	0%	242	15.7%	19	31.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23927240	23927240	+	Missense_Mutation	SNP	C	C	T	rs146668980	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138286.2	-1	validated	p.C371Y	1.000	513	0%	364	29.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
POP4	10775	genome.wustl.edu	37	19	30106170	30106170	+	Nonsense_Mutation	SNP	C	C	A	rs184488449	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006627.2	+1	reviewed	p.C182*	0.995	67	0%	35	22.9%	62	37%	-	-	-	HMMPfam_UPF0086,HMMSmart_SM00538,superfamily_RNase P subunit p29-like
CCNE1	898	genome.wustl.edu	37	19	30314647	30314647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001238.1	+1	reviewed	p.S399I	1.000	125	0%	50	24%	22	59%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
URI1	8725	genome.wustl.edu	37	19	30500155	30500155	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003796.2	+1	reviewed	p.D310	0.001	121	0.8%	60	31.7%	67	47.7%	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	31040341	31040341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.S1272N	1.000	89	0%	42	26.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768873	31768873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.A609V	1.000	201	0%	103	10.7%	1	0%	probably_damaging(0.955)	deleterious(0.01)	deleterious(0.804)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769292	31769292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.E469D	1.000	420	0%	205	29.3%	2	0%	possibly_damaging(0.882)	tolerated(0.25)	neutral(0.381)	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31770554	31770554	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.E49*	1.000	118	0%	75	25.3%	1	0%	-	-	-	NULL
ZNF507	22847	genome.wustl.edu	37	19	32844077	32844077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.T114N	0.082	222	0%	114	29.8%	11	45.4%	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
ZNF507	22847	genome.wustl.edu	37	19	32845599	32845599	+	Silent	SNP	C	C	T	rs139741881	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136156.1	+1	validated	p.S621	0.000	243	0%	119	26.9%	12	66.6%	-	-	-	NULL
CEP89	84902	genome.wustl.edu	37	19	33392244	33392244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032816.3	-1	validated	p.A547V	0.259	376	0%	279	26.9%	14	57.1%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33498966	33498966	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.T238	0.000	91	0%	54	40.7%	30	36.6%	-	-	-	HMMPfam_BRO1
GPATCH1	55094	genome.wustl.edu	37	19	33608861	33608861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018025.2	+1	provisional	p.S776I	0.996	72	0%	32	21.9%	12	58.3%	benign(0.344)	deleterious(0.02)	deleterious(0.491)	NULL
PEPD	5184	genome.wustl.edu	37	19	34003534	34003534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000285.3	-1	reviewed	p.R56C	1.000	50	0%	20	25%	44	25%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_AMP_N,superfamily_SSF53092
LSM14A	26065	genome.wustl.edu	37	19	34710328	34710328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114093.1	+1	validated	p.R272C	1.000	246	0%	150	26.7%	35	8.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
KIAA0355	9710	genome.wustl.edu	37	19	34818325	34818325	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	e3-1	1.000	188	0%	92	29.3%	1	100%	-	-	-	-
KIAA0355	9710	genome.wustl.edu	37	19	34838930	34838930	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014686.3	+1	validated	p.P890	0.173	46	0%	16	25%	9	33.3%	-	-	-	NULL
ZNF181	339318	genome.wustl.edu	37	19	35232244	35232244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029997.3	+1	validated	p.P320S	1.000	187	0%	109	29.4%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00614,superfamily_C2H2 and C2HC zinc fingers
ZNF181	339318	genome.wustl.edu	37	19	35232749	35232749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029997.3	+1	validated	p.P488H	0.996	147	0%	104	32.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00614,superfamily_C2H2 and C2HC zinc fingers
ZNF599	148103	genome.wustl.edu	37	19	35250727	35250727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.A327T	0.000	189	0.5%	91	29.7%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35451825	35451825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175872.4	-1	validated	p.R36K	0.990	547	0.2%	271	28%	1	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SCN1B	6324	genome.wustl.edu	37	19	35524673	35524673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199037.3	+1	reviewed	p.V160I	0.011	139	0%	50	30%	0	-	unknown(0)	deleterious(0)	-	NULL
LSR	51599	genome.wustl.edu	37	19	35749873	35749873	+	Silent	SNP	G	G	A	rs186050633	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205834.2	+1	validated	p.T208	0.078	94	0%	54	29.6%	203	40.8%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CD22	933	genome.wustl.edu	37	19	35827244	35827244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001771.3	+1	validated	p.H240Y	0.997	126	0%	63	33.3%	0	-	benign(0.084)	tolerated(1)	neutral(0.006)	superfamily_Immunoglobulin
CD22	933	genome.wustl.edu	37	19	35832837	35832837	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001771.3	+1	validated	p.G668	0.000	377	0.3%	191	27.2%	3	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ATP4A	495	genome.wustl.edu	37	19	36046418	36046418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000704.2	-1	reviewed	p.R694H	0.953	83	0%	34	29.4%	0	-	benign(0.408)	tolerated(0.32)	neutral(0.156)	HMMPfam_Hydrolase,superfamily_SSF56784,superfamily_SSF81665
HAUS5	23354	genome.wustl.edu	37	19	36109581	36109581	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015302.1	+1	validated	p.R332	0.000	104	0%	52	26.9%	11	54.5%	-	-	-	NULL
RBM42	79171	genome.wustl.edu	37	19	36128233	36128233	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024321.3	+1	provisional	p.R437C	0.987	78	0%	42	26.2%	101	40.5%	unknown(0)	deleterious(0)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MLL4	9757	genome.wustl.edu	37	19	36220140	36220140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.E1620D	1.000	28	0%	14	28.6%	27	37%	possibly_damaging(0.45)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36229396	36229396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.D2696Y	1.000	39	2.6%	26	34.6%	64	42.1%	probably_damaging(0.997)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
ARHGAP33	115703	genome.wustl.edu	37	19	36271894	36271894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.R301L	1.000	91	0%	36	19.4%	11	45.4%	probably_damaging(0.993)	deleterious(0.02)	deleterious(0.833)	NULL
PRODH2	58510	genome.wustl.edu	37	19	36303395	36303395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021232.1	-1	reviewed	p.V156I	0.000	118	0%	65	32.3%	0	-	benign(0.002)	tolerated(0.54)	neutral(0.007)	HMMPfam_Pro_dh
PRODH2	58510	genome.wustl.edu	37	19	36303435	36303435	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021232.1	-1	reviewed	p.L142	1.000	71	0%	51	27.5%	0	-	-	-	-	HMMPfam_Pro_dh
NPHS1	4868	genome.wustl.edu	37	19	36339287	36339287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	p.G395S	1.000	86	0%	56	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
APLP1	333	genome.wustl.edu	37	19	36365493	36365493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024807.1	+1	reviewed	p.A382T	1.000	182	0%	65	30.8%	0	-	possibly_damaging(0.769)	tolerated(0.06)	deleterious(0.608)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APLP1	333	genome.wustl.edu	37	19	36365528	36365528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024807.1	+1	reviewed	p.E393D	1.000	120	0.8%	47	27.7%	2	0%	benign(0.118)	deleterious(0.01)	neutral(0.415)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
CLIP3	25999	genome.wustl.edu	37	19	36510152	36510152	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015526.1	-1	provisional	p.G325	1.000	65	0%	41	9.8%	11	18.1%	-	-	-	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain
WDR62	284403	genome.wustl.edu	37	19	36564345	36564345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.S382I	1.000	302	0.3%	167	23.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR62	284403	genome.wustl.edu	37	19	36573976	36573976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.K461N	1.000	35	0%	16	31.2%	5	40%	possibly_damaging(0.868)	tolerated(0.06)	deleterious(0.659)	superfamily_WD40 repeat-like
WDR62	284403	genome.wustl.edu	37	19	36579993	36579993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.R608C	1.000	36	0%	25	44%	5	40%	possibly_damaging(0.785)	deleterious(0)	deleterious(0.738)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TBCB	1155	genome.wustl.edu	37	19	36607067	36607067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001281.2	+1	validated	p.D80G	1.000	110	0%	68	17.6%	88	6.8%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	superfamily_SSF54236
TBCB	1155	genome.wustl.edu	37	19	36611654	36611654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001281.2	+1	validated	p.V101M	0.924	67	0%	25	36%	109	35.7%	benign(0.003)	tolerated(0.18)	neutral(0.056)	NULL
CAPNS1	826	genome.wustl.edu	37	19	36636879	36636879	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003962.1	+1	reviewed	p.A176D	0.992	446	0.4%	228	29.8%	1060	38.8%	benign(0.214)	tolerated(0.35)	neutral(0.042)	HMMSmart_EFh,superfamily_SSF47473
ZNF565	147929	genome.wustl.edu	37	19	36685204	36685204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042474.1	-1	validated	p.V55I	0.988	83	0%	37	16.2%	4	25%	benign(0)	tolerated(1)	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF146	7705	genome.wustl.edu	37	19	36727701	36727701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099638.1	+1	validated	p.R120I	1.000	264	0%	145	21.4%	99	48.4%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP14	57677	genome.wustl.edu	37	19	36831768	36831768	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020917.1	-1	provisional	p.A320	0.932	459	0%	258	27.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF260	339324	genome.wustl.edu	37	19	37005066	37005066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012756.2	-1	validated	p.P359T	0.999	330	0%	178	30.9%	16	37.5%	possibly_damaging(0.521)	deleterious(0.01)	deleterious(0.581)	superfamily_SSF57667
ZNF529	57711	genome.wustl.edu	37	19	37037834	37037834	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.S542	0.122	385	0%	248	31.5%	10	30%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF529	57711	genome.wustl.edu	37	19	37037883	37037883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.R526H	0.953	317	0.3%	216	27.3%	13	61.5%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37100946	37100946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032825.3	+1	validated	p.V44I	0.005	244	0.4%	167	33.5%	1	0%	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF382	84911	genome.wustl.edu	37	19	37118250	37118250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032825.3	+1	validated	p.R484K	1.000	295	0%	201	29.4%	3	66.6%	benign(0.317)	tolerated(0.21)	neutral(0.143)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF461	92283	genome.wustl.edu	37	19	37129781	37129781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153257.2	-1	validated	p.R489I	0.275	384	0%	192	30.2%	4	50%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF790	388536	genome.wustl.edu	37	19	37310005	37310005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206894.2	-1	validated	p.R414Q	0.002	292	0%	179	32.4%	1	0%	possibly_damaging(0.872)	tolerated(0.05)	deleterious(0.684)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF829	374899	genome.wustl.edu	37	19	37382662	37382662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037232.3	-1	validated	p.R344I	1.000	341	0%	216	16.2%	0	-	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF420	147923	genome.wustl.edu	37	19	37581953	37581953	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144689.3	+1	provisional	p.C22	0.273	303	0%	163	30.1%	14	50%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF420	147923	genome.wustl.edu	37	19	37618409	37618409	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144689.3	+1	provisional	p.C172	1.000	289	0%	171	36.3%	7	28.5%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585A	199704	genome.wustl.edu	37	19	37642612	37642612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152655.2	-1	validated	p.R675M	0.000	621	0%	358	31.3%	2	50%	probably_damaging(0.992)	tolerated(0.2)	deleterious(0.496)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF585B	92285	genome.wustl.edu	37	19	37676327	37676327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.Q704H	0.009	579	0%	338	12.1%	6	0%	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37677281	37677281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.D386E	0.001	543	0.2%	333	28.8%	4	75%	possibly_damaging(0.653)	tolerated(1)	neutral(0.230)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF585B	92285	genome.wustl.edu	37	19	37680939	37680939	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152279.3	-1	validated	p.H62	0.969	354	0%	192	22.9%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
HKR1	284459	genome.wustl.edu	37	19	37853811	37853811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181786.2	+1	provisional	p.L372I	0.688	216	0%	126	12.7%	16	18.7%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF527	84503	genome.wustl.edu	37	19	37871271	37871271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032453.1	+1	validated	p.A85T	0.238	212	0%	123	26%	3	66.6%	possibly_damaging(0.915)	tolerated(0.58)	neutral(0.371)	NULL
ZNF569	148266	genome.wustl.edu	37	19	37904940	37904940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152484.2	-1	validated	p.I207S	1.000	234	0%	176	29.5%	5	40%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF793	390927	genome.wustl.edu	37	19	38028556	38028556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013659.2	+1	validated	p.M332I	0.557	143	0%	69	30.4%	8	75%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF571	51276	genome.wustl.edu	37	19	38055681	38055681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016536.3	-1	validated	p.R550I	0.748	556	0.4%	352	14.5%	5	20%	possibly_damaging(0.943)	tolerated(0.12)	deleterious(0.648)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF540	163255	genome.wustl.edu	37	19	38103831	38103831	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.P550	0.464	456	0.2%	250	28.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF607	84775	genome.wustl.edu	37	19	38189308	38189308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032689.4	-1	validated	p.S575I	0.000	212	0%	102	24.5%	10	50%	benign(0.113)	tolerated(0.39)	neutral(0.025)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF573	126231	genome.wustl.edu	37	19	38230869	38230869	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152360.3	-1	validated	p.G116	0.000	609	0.2%	412	13.1%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP1R14A	94274	genome.wustl.edu	37	19	38742953	38742953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033256.1	-1	provisional	p.P103H	0.790	112	0%	54	13%	27	3.7%	benign(0.273)	deleterious(0.01)	neutral(0.435)	HMMPfam_PP1_inhibitor,superfamily_Myosin phosphatase inhibitor 17kDa protein CPI-17
RYR1	6261	genome.wustl.edu	37	19	38948797	38948797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A678T	0.997	426	0%	237	26.2%	0	-	benign(0.425)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR1	6261	genome.wustl.edu	37	19	38964033	38964033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.G1261D	1.000	98	1%	59	18.6%	0	-	probably_damaging(1)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	38979967	38979967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.A1900S	0.617	159	0%	90	30%	0	-	benign(0.02)	-	-	NULL
RYR1	6261	genome.wustl.edu	37	19	39005675	39005675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.V3161A	1.000	55	0%	29	37.9%	0	-	possibly_damaging(0.865)	-	-	NULL
HNRNPL	3191	genome.wustl.edu	37	19	39327370	39327370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001533.2	-1	reviewed	p.A588T	1.000	573	0%	292	21.2%	452	77.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
RINL	126432	genome.wustl.edu	37	19	39360299	39360299	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198445.2	-1	provisional	p.L349R	1.000	38	0%	21	28.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VPS9,superfamily_SSF109993
SIRT2	22933	genome.wustl.edu	37	19	39379771	39379771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012237.2	-1	reviewed	p.R153C	1.000	69	1.4%	44	22.7%	53	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
SAMD4B	55095	genome.wustl.edu	37	19	39866447	39866447	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018028.2	+1	provisional	p.S275	1.000	637	0%	315	26.7%	51	41.1%	-	-	-	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39957363	39957363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.L339M	1.000	220	0%	121	23.1%	62	41.9%	benign(0.123)	tolerated(0.06)	neutral(0.333)	NULL
DYRK1B	9149	genome.wustl.edu	37	19	40318964	40318964	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004714.1	-1	reviewed	p.F260	0.742	101	0%	35	31.4%	25	36%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
FBL	2091	genome.wustl.edu	37	19	40331262	40331262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001436.3	-1	reviewed	p.R59I	0.000	325	0%	206	28.6%	20	25%	unknown(0)	deleterious(0)	-	NULL
FCGBP	8857	genome.wustl.edu	37	19	40377123	40377123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.R3767C	0.398	82	1.2%	48	27.1%	3	0%	unknown(0)	tolerated(0.08)	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40419710	40419710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.R1095H	0.003	223	0%	134	13.4%	0	-	benign(0.216)	tolerated(0.59)	neutral(0.026)	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40424046	40424046	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.S719	0.001	72	1.4%	59	23.7%	0	-	-	-	-	HMMPfam_C8
FCGBP	8857	genome.wustl.edu	37	19	40424379	40424379	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.C608	0.983	80	0%	49	20.4%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_VWD
FCGBP	8857	genome.wustl.edu	37	19	40433308	40433308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.G321C	0.097	175	1.1%	83	30.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40540811	40540811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.R652H	0.001	891	0.1%	584	28.6%	0	-	probably_damaging(0.984)	tolerated(0.54)	neutral(0.438)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780B	163131	genome.wustl.edu	37	19	40541800	40541800	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.E322	0.020	585	0.3%	307	14.7%	3	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF780A	284323	genome.wustl.edu	37	19	40580852	40580852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142577.1	-1	validated	p.K500N	0.977	624	0%	374	12.3%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_C2H2 and C2HC zinc fingers
MAP3K10	4294	genome.wustl.edu	37	19	40698582	40698582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002446.3	+1	reviewed	p.P215H	0.997	32	0%	23	30.4%	7	28.5%	probably_damaging(0.995)	tolerated(0.08)	deleterious(0.758)	superfamily_Kinase_like,HMMPfam_Pkinase
AKT2	208	genome.wustl.edu	37	19	40747910	40747910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001626.3	-1	reviewed	p.R170W	1.000	35	0%	20	40%	66	45.4%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PRX	57716	genome.wustl.edu	37	19	40904491	40904491	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020956.2	-1	reviewed	p.C139	0.074	30	0%	23	26.1%	0	-	-	-	-	NULL
PRX	57716	genome.wustl.edu	37	19	40904650	40904650	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181882.2	-1	reviewed	p.C86	0.806	70	0%	32	28.1%	1	0%	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
SERTAD1	29950	genome.wustl.edu	37	19	40929401	40929401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013376.3	-1	validated	p.P18H	0.160	84	0%	51	11.8%	22	13.6%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
LTBP4	8425	genome.wustl.edu	37	19	41117217	41117217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308370	+1	known	p.G724D	1.000	26	0%	10	40%	22	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EGF_CA,superfamily_Grow_fac_recept,HMMPfam_EGF_CA,PatternScan_EGF_CA
ADCK4	79934	genome.wustl.edu	37	19	41209498	41209498	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024876.3	-1	validated	p.S249	0.372	40	0%	23	26.1%	22	36.3%	-	-	-	HMMPfam_ABC1,superfamily_Protein kinase-like (PK-like)
MIA	8190	genome.wustl.edu	37	19	41282908	41282908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006533.2	+1	validated	p.R99H	1.000	55	0%	32	31.2%	0	-	benign(0.003)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
RAB4B	53916	genome.wustl.edu	37	19	41292604	41292604	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378307	+1	known	p.R104*	0.239	133	0%	69	24.6%	39	17.9%	-	-	-	NULL
RAB4B	53916	genome.wustl.edu	37	19	41292640	41292640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378307	+1	known	p.H116Y	0.980	128	0%	55	29.1%	34	17.6%	unknown(0)	-	-	NULL
CYP2A13	1553	genome.wustl.edu	37	19	41601689	41601689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000766.3	+1	reviewed	p.G443D	0.138	165	0%	73	20.5%	0	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2S1	29785	genome.wustl.edu	37	19	41700485	41700485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030622.6	+1	reviewed	p.L72M	0.999	236	0%	120	27.5%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	HMMPfam_p450,superfamily_Cytochrome P450
AXL	558	genome.wustl.edu	37	19	41726666	41726666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021913.3	+1	reviewed	p.R71W	1.000	66	0%	43	11.6%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HNRNPUL1	11100	genome.wustl.edu	37	19	41787069	41787069	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007040.3	+1	reviewed	p.G296	0.154	129	0%	74	25.7%	115	38.2%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
HNRNPUL1	11100	genome.wustl.edu	37	19	41800542	41800542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007040.3	+1	reviewed	p.R490H	1.000	92	0%	50	12%	165	22.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CEACAM4	1089	genome.wustl.edu	37	19	42128110	42128110	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001817.2	-1	validated	p.A152	0.003	103	0%	41	12.2%	1	0%	-	-	-	NULL
LYPD4	147719	genome.wustl.edu	37	19	42341229	42341229	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173506.4	-1	validated	p.A243	0.205	305	0%	192	25.5%	0	-	-	-	-	NULL
ARHGEF1	9138	genome.wustl.edu	37	19	42396676	42396676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199002.1	+1	reviewed	p.R139C	1.000	71	0%	39	28.2%	37	37.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
ATP1A3	478	genome.wustl.edu	37	19	42471871	42471871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152296.3	-1	reviewed	p.A955D	1.000	63	0%	25	16%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Cation_ATPase_C,superfamily_SSF81665
GRIK5	2901	genome.wustl.edu	37	19	42510004	42510004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002088.3	-1	reviewed	p.V712I	1.000	42	0%	14	28.6%	2	0%	benign(0.154)	deleterious(0)	neutral(0.458)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIK5	2901	genome.wustl.edu	37	19	42525546	42525546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002088.3	-1	reviewed	p.G593D	1.000	61	0%	22	31.8%	0	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
GRIK5	2901	genome.wustl.edu	37	19	42563648	42563648	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002088.3	-1	reviewed	p.G180	1.000	204	0%	127	37%	1	0%	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ZNF526	116115	genome.wustl.edu	37	19	42729173	42729173	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133444.1	+1	provisional	p.C206	0.230	399	0%	206	31.6%	12	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CIC	23152	genome.wustl.edu	37	19	42794725	42794725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.R602I	1.000	116	0%	51	21.6%	28	39.2%	possibly_damaging(0.55)	deleterious(0)	deleterious(0.631)	NULL
TMEM145	284339	genome.wustl.edu	37	19	42819144	42819144	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173633.2	+1	validated	e6-1	1.000	159	0%	49	30.6%	0	-	-	-	-	-
MEGF8	1954	genome.wustl.edu	37	19	42841260	42841260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.Q472R	1.000	95	0%	36	36.1%	5	0%	benign(0.261)	tolerated(0.25)	neutral(0.064)	HMMPfam_Kelch_1,superfamily_Gal_oxid_central
MEGF8	1954	genome.wustl.edu	37	19	42853723	42853723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.L724I	1.000	44	0%	14	28.6%	3	100%	probably_damaging(0.995)	tolerated(0.26)	deleterious(0.492)	NULL
LIPE	3991	genome.wustl.edu	37	19	42912195	42912195	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.I530S	1.000	195	0.5%	93	12.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HSL_N
CEACAM1	634	genome.wustl.edu	37	19	43023193	43023193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001712.4	-1	reviewed	p.P385T	0.000	236	0%	129	33.3%	34	52.9%	benign(0.145)	tolerated(0.13)	neutral(0.265)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PSG3	5671	genome.wustl.edu	37	19	43243083	43243083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021016.3	-1	validated	p.L75I	0.000	2472	0.2%	1408	27.5%	0	-	benign(0.005)	tolerated(0.47)	neutral(0.011)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PSG2	5670	genome.wustl.edu	37	19	43576006	43576006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031246.2	-1	validated	p.Q270H	0.072	838	0%	467	13.9%	0	-	benign(0.332)	tolerated(0.09)	neutral(0.400)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
PSG9	5678	genome.wustl.edu	37	19	43762339	43762339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000244293	-1	known	p.A327T	0.001	689	0.3%	453	27.6%	0	-	possibly_damaging(0.753)	deleterious(0.01)	deleterious(0.682)	NULL
PHLDB3	653583	genome.wustl.edu	37	19	44005902	44005902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198850.3	-1	validated	p.R173H	0.000	24	0%	22	27.3%	12	75%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
XRCC1	7515	genome.wustl.edu	37	19	44056177	44056177	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006297.2	-1	reviewed	p.T358	0.992	108	0%	53	13.2%	38	5.2%	-	-	-	HMMPfam_BRCT,HMMSmart_SM00292,superfamily_BRCT domain
IRGQ	126298	genome.wustl.edu	37	19	44096976	44096976	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007561.2	-1	validated	p.G358	0.000	200	0%	79	24.1%	3	0%	-	-	-	NULL
ZNF576	79177	genome.wustl.edu	37	19	44103127	44103127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145347.1	+1	validated	p.A77V	0.999	246	0%	126	33.3%	40	32.5%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ZNF576	79177	genome.wustl.edu	37	19	44103344	44103344	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145347.1	+1	validated	p.G149	0.977	103	0%	50	30%	27	48.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
IRGC	56269	genome.wustl.edu	37	19	44223001	44223001	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019612.3	+1	validated	p.S97	0.000	41	0%	21	66.7%	0	-	-	-	-	HMMPfam_IIGP,superfamily_SSF52540
ZNF283	284349	genome.wustl.edu	37	19	44351968	44351968	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181845.1	+1	validated	p.C405	0.178	464	0.4%	279	28.3%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44377491	44377491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033719.2	-1	validated	p.I292S	0.998	264	0%	138	18.8%	3	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF404	342908	genome.wustl.edu	37	19	44377970	44377970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033719.2	-1	validated	p.E132D	0.027	610	0%	412	22.8%	2	0%	benign(0.246)	tolerated(0.09)	neutral(0.322)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF155	7711	genome.wustl.edu	37	19	44500313	44500313	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003445.2	+1	validated	p.Q102*	0.001	338	0%	192	25.5%	9	66.6%	-	-	-	NULL
ZNF230	7773	genome.wustl.edu	37	19	44515101	44515101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006300.3	+1	validated	p.A304S	0.966	429	0%	246	33.3%	1	0%	benign(0.117)	deleterious(0.02)	neutral(0.393)	superfamily_SSF57667
ZNF224	7767	genome.wustl.edu	37	19	44611367	44611367	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013398.2	+1	validated	p.G352C	0.004	379	0.3%	187	23%	13	23%	benign(0.055)	tolerated(0.14)	neutral(0.253)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF225	7768	genome.wustl.edu	37	19	44635400	44635400	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013362.2	+1	validated	p.K211	0.024	350	0%	194	27.8%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF234	10780	genome.wustl.edu	37	19	44654589	44654589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144824.1	+1	validated	p.V56I	0.000	96	0%	57	29.8%	4	50%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF234	10780	genome.wustl.edu	37	19	44661744	44661744	+	Silent	SNP	G	G	A	rs186620429	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144824.1	+1	validated	p.S525	0.000	429	0%	256	23.4%	3	66.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44680251	44680251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.S279Y	0.563	196	0%	123	17.9%	7	0%	possibly_damaging(0.654)	deleterious(0.04)	deleterious(0.579)	superfamily_SSF57667
ZNF226	7769	genome.wustl.edu	37	19	44681246	44681246	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.G611*	1.000	398	0%	264	15.5%	12	8.3%	-	-	-	superfamily_SSF57667
ZNF227	7770	genome.wustl.edu	37	19	44739729	44739729	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182490.1	+1	provisional	p.C382	0.072	246	0%	145	10.3%	13	15.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF233	353355	genome.wustl.edu	37	19	44777590	44777590	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181756.1	+1	provisional	p.T259	0.164	214	0%	184	37.5%	1	0%	-	-	-	NULL
ZNF235	9310	genome.wustl.edu	37	19	44792423	44792423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004234.4	-1	reviewed	p.D389Y	0.004	229	0%	175	16.6%	1	0%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44890741	44890741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152354.3	-1	validated	p.L556I	0.000	242	0%	148	27.7%	0	-	probably_damaging(0.98)	tolerated(0.13)	deleterious(0.676)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF285	26974	genome.wustl.edu	37	19	44891353	44891353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152354.3	-1	validated	p.G352W	0.509	199	0%	127	26.8%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BCL3	602	genome.wustl.edu	37	19	45259556	45259556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005178.4	+1	reviewed	p.Q160*	0.998	27	0%	23	26.1%	64	18.7%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BCAM	4059	genome.wustl.edu	37	19	45316540	45316540	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005581.3	+1	reviewed	p.A180T	0.289	172	0%	116	23.3%	121	40.4%	possibly_damaging(0.689)	tolerated(0.28)	neutral(0.278)	HMMPfam_C2-set_2,superfamily_SSF48726
PVRL2	5819	genome.wustl.edu	37	19	45375274	45375274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042724.1	+1	reviewed	p.G215R	0.773	417	0.2%	245	35.1%	182	41.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
ERCC1	2067	genome.wustl.edu	37	19	45918127	45918127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202001.2	-1	reviewed	p.V232I	0.995	147	0%	84	31%	82	32.9%	benign(0.028)	tolerated(0.3)	neutral(0.030)	superfamily_RuvA_2_like
ERCC1	2067	genome.wustl.edu	37	19	45918159	45918159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202001.2	-1	reviewed	p.D221V	1.000	171	0%	95	18.9%	99	50.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RuvA_2_like
FOSB	2354	genome.wustl.edu	37	19	45973893	45973893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006732.2	+1	reviewed	p.A45T	1.000	271	0.4%	112	27.7%	1	0%	benign(0.253)	tolerated(1)	neutral(0.026)	NULL
RTN2	6253	genome.wustl.edu	37	19	45997490	45997490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005619.3	-1	reviewed	p.P250S	1.000	123	0%	72	13.9%	1	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
RTN2	6253	genome.wustl.edu	37	19	45997792	45997792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005619.3	-1	reviewed	p.A184D	0.956	156	0%	75	20%	3	33.3%	possibly_damaging(0.638)	deleterious(0.01)	deleterious(0.629)	NULL
PPM1N	147699	genome.wustl.edu	37	19	46003765	46003765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080401.1	+1	provisional	p.T370N	0.996	62	0%	39	38.5%	2	0%	probably_damaging(0.99)	tolerated(0.5)	neutral(0.452)	HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain
GPR4	2828	genome.wustl.edu	37	19	46094571	46094571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005282.2	-1	validated	p.R185Q	1.000	68	0%	33	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
FBXO46	23403	genome.wustl.edu	37	19	46215152	46215152	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080469.1	-1	provisional	p.R534	1.000	29	0%	11	45.5%	37	21.6%	-	-	-	superfamily_F-box domain
FBXO46	23403	genome.wustl.edu	37	19	46215533	46215533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080469.1	-1	provisional	p.Q407H	1.000	43	0%	17	35.3%	10	30%	probably_damaging(0.991)	tolerated(0.12)	deleterious(0.705)	NULL
FBXO46	23403	genome.wustl.edu	37	19	46216272	46216272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080469.1	-1	provisional	p.A161V	0.001	42	0%	25	40%	11	27.2%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
RSPH6A	81492	genome.wustl.edu	37	19	46299297	46299297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030785.3	-1	reviewed	p.P662S	1.000	146	0%	71	33.8%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Radial_spoke
RSPH6A	81492	genome.wustl.edu	37	19	46307715	46307715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030785.3	-1	reviewed	p.A483V	0.999	55	0%	28	35.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Radial_spoke
RSPH6A	81492	genome.wustl.edu	37	19	46318264	46318264	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030785.3	-1	reviewed	p.W57*	0.020	45	0%	24	41.7%	0	-	-	-	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46823775	46823775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414707	+1	known	p.A310V	0.000	86	1.2%	53	28.3%	0	-	-	-	-	NULL
CCDC8	83987	genome.wustl.edu	37	19	46914720	46914720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032040.3	-1	validated	p.G450C	0.001	167	0.6%	81	38.3%	2	0%	unknown(0)	deleterious(0)	-	NULL
PRKD2	25865	genome.wustl.edu	37	19	47207835	47207835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079880.1	-1	reviewed	p.R195C	1.000	44	0%	35	20%	56	16%	possibly_damaging(0.925)	tolerated(0.05)	deleterious(0.719)	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47425116	47425116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.G1062C	1.000	161	0%	103	25.2%	14	21.4%	possibly_damaging(0.637)	deleterious(0)	deleterious(0.667)	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47585444	47585444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.H443Y	1.000	181	0%	96	32.3%	14	42.8%	unknown(0)	deleterious(0)	-	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
ZC3H4	23211	genome.wustl.edu	37	19	47588355	47588355	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.G355	0.952	521	0.2%	276	25.7%	7	42.8%	-	-	-	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47597331	47597331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.A130T	0.939	118	0%	63	27%	9	22.2%	unknown(0)	tolerated(0.05)	-	NULL
SAE1	10055	genome.wustl.edu	37	19	47656226	47656226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000270225	+1	known	p.K152N	1.000	725	0.1%	432	22.7%	87	40.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins
SAE1	10055	genome.wustl.edu	37	19	47658419	47658419	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005500.2	+1	validated	p.P192L	0.995	557	0%	305	11.8%	113	19.4%	-	-	-	NULL
CCDC9	26093	genome.wustl.edu	37	19	47761900	47761900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015603.2	+1	validated	p.A30T	1.000	229	0%	108	32.4%	10	50%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
GPR77	27202	genome.wustl.edu	37	19	47844135	47844135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018485.1	+1	provisional	p.A27T	0.000	43	0%	28	25%	4	50%	benign(0)	tolerated(1)	-	superfamily_Family A G protein-coupled receptor-like
DHX34	9704	genome.wustl.edu	37	19	47858482	47858482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.L298M	1.000	266	0%	144	23.6%	26	53.8%	possibly_damaging(0.74)	deleterious(0.01)	deleterious(0.677)	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAPA	8775	genome.wustl.edu	37	19	47991588	47991588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003827.2	-1	reviewed	p.R282H	1.000	25	0%	16	37.5%	264	37.5%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	superfamily_TPR-like
EHD2	30846	genome.wustl.edu	37	19	48244544	48244544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.D496G	1.000	64	0%	28	17.9%	11	0%	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMSmart_SM00027,PatternScan_EF_HAND_1,superfamily_EF-hand
PLA2G4C	8605	genome.wustl.edu	37	19	48556371	48556371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.T488I	0.012	162	0%	80	33.8%	2	0%	probably_damaging(0.998)	tolerated(0.39)	deleterious(0.490)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
PLA2G4C	8605	genome.wustl.edu	37	19	48593651	48593651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.N245D	0.018	214	0.5%	134	26.1%	2	0%	benign(0)	tolerated(0.91)	-	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
PLA2G4C	8605	genome.wustl.edu	37	19	48603026	48603026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003706.2	-1	reviewed	p.A117T	0.000	187	0%	118	29.7%	5	0%	benign(0.062)	tolerated(0.39)	neutral(0.020)	HMMSmart_PLAc,superfamily_Acyl_Trfase/lysoPlipase
TMEM143	55260	genome.wustl.edu	37	19	48848492	48848492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018273.2	-1	provisional	p.Q163H	1.000	441	0%	196	29.6%	4	25%	benign(0.01)	tolerated(0.14)	neutral(0.250)	NULL
SYNGR4	23546	genome.wustl.edu	37	19	48878934	48878934	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012451.2	+1	reviewed	p.P132	0.000	115	0%	66	25.8%	1	0%	-	-	-	HMMPfam_MARVEL
GRIN2D	2906	genome.wustl.edu	37	19	48908135	48908135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000836.2	+1	reviewed	p.I204V	1.000	149	0%	83	32.5%	6	0%	benign(0.004)	tolerated(0.85)	neutral(0.001)	HMMPfam_ANF_receptor,superfamily_SSF53822
CA11	770	genome.wustl.edu	37	19	49143442	49143442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001217.3	-1	reviewed	p.S127R	1.000	156	0%	98	38.8%	6	0%	possibly_damaging(0.62)	tolerated(0.94)	neutral(0.216)	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd
PPP1R15A	23645	genome.wustl.edu	37	19	49376811	49376811	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014330.3	+1	validated	p.A107	0.004	349	0%	204	28.9%	79	41.7%	-	-	-	NULL
TULP2	7288	genome.wustl.edu	37	19	49384345	49384345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003323.2	-1	validated	p.D496Y	1.000	292	0%	147	28.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Tub,superfamily_Tubby_C
TULP2	7288	genome.wustl.edu	37	19	49391446	49391446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003323.2	-1	validated	p.E237*	0.002	200	0%	87	11.5%	0	-	-	-	-	NULL
DHDH	27294	genome.wustl.edu	37	19	49445795	49445795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014475.3	+1	reviewed	p.V240M	0.688	46	0%	19	26.3%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF55347
GYS1	2997	genome.wustl.edu	37	19	49477527	49477527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002103.4	-1	reviewed	p.R498C	1.000	34	0%	27	25.9%	49	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycogen_syn,superfamily_SSF53756
RUVBL2	10856	genome.wustl.edu	37	19	49513293	49513293	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006666.1	+1	reviewed	p.R211	0.947	40	0%	17	23.5%	229	38.8%	-	-	-	HMMSmart_AAA,HMMPfam_TIP49,superfamily_SSF52540
CGB7	94027	genome.wustl.edu	37	19	49558181	49558181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033142.1	-1	reviewed	p.A34T	1.000	74	0%	35	14.3%	1	0%	benign(0.291)	tolerated(0.27)	neutral(0.123)	HMMSmart_GHB,HMMPfam_Cys_knot,superfamily_SSF57501
LIN7B	64130	genome.wustl.edu	37	19	49621171	49621171	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022165.2	+1	validated	p.S166	0.409	131	0%	61	27.9%	8	25%	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
TRPM4	54795	genome.wustl.edu	37	19	49685863	49685863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017636.2	+1	provisional	p.D431V	0.998	172	0%	92	16.3%	30	60%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
TRPM4	54795	genome.wustl.edu	37	19	49686005	49686005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017636.2	+1	provisional	p.D478E	1.000	99	0%	41	22%	28	50%	benign(0.009)	tolerated(0.7)	neutral(0.003)	NULL
SLC6A16	28968	genome.wustl.edu	37	19	49814670	49814670	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014037.2	-1	validated	e1-2	0.964	189	0%	92	23.9%	2	50%	-	-	-	-
RCN3	57333	genome.wustl.edu	37	19	50031851	50031851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020650.2	+1	provisional	p.S41I	1.000	202	0%	114	37.7%	3	33.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_SSF47473
RCN3	57333	genome.wustl.edu	37	19	50040454	50040454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020650.2	+1	provisional	p.V204M	1.000	202	0%	92	29.3%	14	7.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_EFh,superfamily_SSF47473
BCL2L12	83596	genome.wustl.edu	37	19	50170336	50170336	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138639.1	+1	reviewed	p.C140	0.816	84	0%	45	28.9%	34	32.3%	-	-	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50208013	50208013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152359.1	+1	provisional	p.P247L	0.995	46	0%	15	40%	2	0%	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
AP2A1	160	genome.wustl.edu	37	19	50285068	50285068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014203.2	+1	reviewed	p.R41H	1.000	128	0%	62	27.4%	40	37.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Adaptin_N,superfamily_ARM repeat
AP2A1	160	genome.wustl.edu	37	19	50295289	50295289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014203.2	+1	reviewed	p.R191C	0.993	61	0%	25	16%	70	40%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Adaptin_N,superfamily_ARM repeat
FUZ	80199	genome.wustl.edu	37	19	50315912	50315912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025129.4	-1	validated	p.T65A	0.961	126	0%	47	34%	5	0%	probably_damaging(0.996)	tolerated(0.09)	deleterious(0.758)	NULL
PTOV1	53635	genome.wustl.edu	37	19	50363285	50363285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017432.3	+1	provisional	p.R362C	1.000	101	0%	42	28.6%	260	40.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TBC1D17	79735	genome.wustl.edu	37	19	50387721	50387721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024682.2	+1	validated	p.V417I	1.000	75	0%	43	37.2%	48	33.3%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
IL4I1	259307	genome.wustl.edu	37	19	50397657	50397657	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172374.1	-1	reviewed	p.T167	0.091	66	0%	38	15.8%	13	0%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
SIGLEC11	114132	genome.wustl.edu	37	19	50463809	50463809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052884.2	-1	validated	p.A154T	0.179	162	0%	73	21.9%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_V-set,superfamily_Immunoglobulin
VRK3	51231	genome.wustl.edu	37	19	50482459	50482459	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016440.3	-1	reviewed	p.T439	0.062	174	0.6%	75	22.7%	38	42.1%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ZNF473	25888	genome.wustl.edu	37	19	50548081	50548081	+	Silent	SNP	C	C	T	rs138578486	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.G127	0.937	272	0%	164	28.7%	6	16.6%	-	-	-	NULL
ZNF473	25888	genome.wustl.edu	37	19	50548737	50548737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.R346H	0.003	458	0%	246	32.1%	8	75%	probably_damaging(0.974)	tolerated(0.15)	deleterious(0.657)	superfamily_C2H2 and C2HC zinc fingers
NR1H2	7376	genome.wustl.edu	37	19	50882299	50882299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007121.4	+1	validated	p.R263H	0.996	102	0%	57	38.6%	55	38.1%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	superfamily_Nuclear receptor ligand-binding domain
MYBPC2	4606	genome.wustl.edu	37	19	50958447	50958447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004533.3	+1	validated	p.E699D	1.000	278	0%	153	35.9%	1	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MYBPC2	4606	genome.wustl.edu	37	19	50958802	50958802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004533.3	+1	validated	p.D747N	1.000	402	0%	215	27.9%	0	-	probably_damaging(0.976)	tolerated(0.05)	deleterious(0.763)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
FAM71E1	112703	genome.wustl.edu	37	19	50979469	50979469	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138411.1	-1	predicted	p.D59	0.055	38	0%	19	21.1%	1	0%	-	-	-	NULL
SYT3	84258	genome.wustl.edu	37	19	51135997	51135997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.V74M	1.000	119	0%	83	19.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SYT3	84258	genome.wustl.edu	37	19	51140611	51140611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.L20I	1.000	27	0%	14	42.9%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51165541	51165541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016148.2	-1	validated	p.P2056L	0.977	47	0%	14	28.6%	0	-	probably_damaging(0.99)	tolerated(0.69)	neutral(0.444)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51172439	51172439	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016148.2	-1	validated	p.T926	0.968	24	0%	22	36.4%	0	-	-	-	-	NULL
SHANK1	50944	genome.wustl.edu	37	19	51192521	51192521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016148.2	-1	validated	p.K660N	1.000	199	0%	90	27.8%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	superfamily_PDZ domain-like
CLEC11A	6320	genome.wustl.edu	37	19	51227249	51227249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002975.2	+1	reviewed	p.E79K	0.009	114	0%	53	41.5%	0	-	possibly_damaging(0.615)	tolerated(0.21)	neutral(0.258)	NULL
GPR32	2854	genome.wustl.edu	37	19	51274701	51274701	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001506.1	+1	provisional	p.R282*	0.000	166	0%	107	30.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KLK1	3816	genome.wustl.edu	37	19	51323614	51323614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002257.2	-1	reviewed	p.H98Y	0.994	221	0%	104	26.9%	2	0%	benign(0.095)	deleterious(0)	neutral(0.452)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
KLK7	5650	genome.wustl.edu	37	19	51483628	51483628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005046.2	-1	reviewed	p.L113I	0.602	48	0%	21	19%	0	-	benign(0.014)	tolerated(0.89)	neutral(0.001)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
SIGLEC9	27180	genome.wustl.edu	37	19	51628469	51628469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014441.1	+1	provisional	p.A80T	0.001	239	0%	127	14.2%	1	0%	benign(0.005)	tolerated(0.59)	neutral(0.004)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SIGLEC9	27180	genome.wustl.edu	37	19	51630306	51630306	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014441.1	+1	provisional	p.N256	0.000	216	0%	106	31.1%	3	0%	-	-	-	superfamily_SSF48726
ETFB	2109	genome.wustl.edu	37	19	51857658	51857658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014763.1	-1	reviewed	p.V79I	0.001	55	0%	26	73.1%	0	-	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	NULL
NKG7	4818	genome.wustl.edu	37	19	51875420	51875420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005601.3	-1	validated	p.A100V	0.999	120	0%	87	37.9%	22	0%	possibly_damaging(0.68)	deleterious(0.02)	deleterious(0.625)	HMMPfam_PMP22_Claudin
SIGLEC10	89790	genome.wustl.edu	37	19	51918562	51918562	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.P401	0.000	117	0%	64	39.1%	5	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51919981	51919981	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.C215*	0.154	107	0%	66	21.2%	11	0%	-	-	-	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
SIGLEC10	89790	genome.wustl.edu	37	19	51920360	51920360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.D133N	0.000	247	0%	145	34.5%	3	0%	benign(0)	tolerated(1)	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SIGLEC8	27181	genome.wustl.edu	37	19	51957544	51957544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014442.2	-1	validated	p.A392T	0.000	237	0.8%	119	27.7%	1	0%	benign(0.005)	deleterious(0.05)	neutral(0.345)	NULL
SIGLEC8	27181	genome.wustl.edu	37	19	51960914	51960914	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014442.2	-1	validated	p.P178	0.211	184	0%	120	22.5%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
CEACAM18	729767	genome.wustl.edu	37	19	51983894	51983894	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080405.1	+1	provisional	p.G181	0.001	122	0%	74	18.9%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
CEACAM18	729767	genome.wustl.edu	37	19	51984899	51984899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080405.1	+1	provisional	p.R279H	0.000	118	0%	50	22%	0	-	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52003547	52003547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053003.2	-1	reviewed	p.Q145H	0.001	191	0%	120	10%	2	0%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
HAS1	3036	genome.wustl.edu	37	19	52217022	52217022	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001523.2	-1	reviewed	p.A465	0.989	47	0%	24	20.8%	0	-	-	-	-	NULL
FPR1	2357	genome.wustl.edu	37	19	52249833	52249833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002029.3	-1	validated	p.V139M	0.000	343	0%	218	28%	14	0%	benign(0.038)	tolerated(0.11)	neutral(0.274)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FPR3	2359	genome.wustl.edu	37	19	52327598	52327598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002030.3	+1	validated	p.K199N	0.917	610	0%	452	27.2%	4	0%	benign(0.132)	tolerated(0.15)	neutral(0.252)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF649	65251	genome.wustl.edu	37	19	52400144	52400144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023074.3	-1	validated	p.D35N	0.484	391	0%	254	28.3%	11	36.3%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF613	79898	genome.wustl.edu	37	19	52448980	52448980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031721.3	+1	validated	p.C615Y	0.961	161	0%	113	11.5%	0	-	possibly_damaging(0.678)	tolerated(0.19)	neutral(0.291)	NULL
ZNF350	59348	genome.wustl.edu	37	19	52468553	52468553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021632.3	-1	validated	p.T385A	0.000	212	0.5%	123	12.2%	8	25%	benign(0.075)	tolerated(0.59)	neutral(0.009)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52505450	52505450	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198480.2	-1	provisional	p.R34	0.177	395	0.8%	247	25.9%	3	33.3%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF432	9668	genome.wustl.edu	37	19	52538446	52538446	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014650.2	-1	provisional	p.G162	0.000	161	0%	90	34.4%	3	66.6%	-	-	-	NULL
ZNF616	90317	genome.wustl.edu	37	19	52619677	52619677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.G247D	0.978	345	0%	226	28.3%	6	100%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52659624	52659624	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.G438*	1.000	386	0.5%	237	11%	13	7.6%	-	-	-	superfamily_SSF57667
ZNF836	162962	genome.wustl.edu	37	19	52660146	52660146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102657.1	-1	provisional	p.H264Y	0.928	177	0%	108	13.9%	7	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52714648	52714648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.A136T	1.000	130	0%	53	39.6%	308	45.1%	benign(0.116)	deleterious(0.05)	neutral(0.354)	superfamily_ARM repeat
ZNF480	147657	genome.wustl.edu	37	19	52825571	52825571	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144684.2	+1	validated	p.A356	0.000	275	0%	213	23.5%	18	38.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF610	162963	genome.wustl.edu	37	19	52869977	52869977	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.I449S	0.043	186	0%	137	28.5%	12	33.3%	possibly_damaging(0.811)	deleterious(0)	deleterious(0.750)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF578	147660	genome.wustl.edu	37	19	53014448	53014448	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099694.1	+1	validated	p.R272*	0.000	562	0.4%	337	14.8%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF83	55769	genome.wustl.edu	37	19	53117693	53117693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105549.1	-1	validated	p.H42R	0.000	390	0%	182	29.7%	18	27.7%	possibly_damaging(0.719)	tolerated(0.1)	deleterious(0.547)	NULL
ZNF816	125893	genome.wustl.edu	37	19	53453564	53453564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031665.1	-1	validated	p.K488N	0.144	315	0%	194	38.1%	10	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF415	55786	genome.wustl.edu	37	19	53612619	53612619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018355.2	-1	validated	p.H227N	0.000	309	0%	200	34.5%	16	37.5%	benign(0.362)	tolerated(0.3)	neutral(0.144)	superfamily_SSF57667
ZNF347	84671	genome.wustl.edu	37	19	53644771	53644771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032584.2	-1	validated	p.A437V	0.000	572	0%	355	24.8%	3	100%	benign(0.036)	tolerated(0.19)	neutral(0.052)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53686148	53686148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024733.3	-1	provisional	p.A2T	0.184	434	0%	235	9.8%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF761	388561	genome.wustl.edu	37	19	53959099	53959099	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008401.3	+1	validated	p.T446	0.002	421	0.2%	227	14.1%	23	8.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF761	388561	genome.wustl.edu	37	19	53959614	53959614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008401.3	+1	validated	p.T618M	0.000	543	0%	288	23.6%	25	24%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
ZNF761	388561	genome.wustl.edu	37	19	53959751	53959751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008401.3	+1	validated	p.C664R	0.592	495	0%	290	26.9%	23	26%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF813	126017	genome.wustl.edu	37	19	53994557	53994557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004301.3	+1	validated	p.C357W	0.031	913	0%	573	24.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF813	126017	genome.wustl.edu	37	19	53994756	53994756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004301.3	+1	validated	p.A424T	0.000	280	0.4%	168	25%	0	-	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF331	55422	genome.wustl.edu	37	19	54080421	54080421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079906.1	+1	validated	p.V203I	0.002	222	0%	180	27.2%	11	81.8%	benign(0.096)	tolerated(0.45)	neutral(0.019)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MIR524	574478	genome.wustl.edu	37	19	54214313	54214313	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385242	+1	known	NULL	0.018	387	0.3%	171	22.2%	0	-	-	-	-	-
MIR519A1	574496	genome.wustl.edu	37	19	54255679	54255679	+	RNA	SNP	G	G	A	rs191444009	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385257	+1	known	NULL	0.006	776	0.1%	462	25.5%	0	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54308607	54308607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.G781S	0.000	157	0%	80	16.3%	0	-	benign(0.002)	tolerated(0.82)	neutral(0.001)	HMMSmart_SM00368,superfamily_RNI-like
NLRP12	91662	genome.wustl.edu	37	19	54313266	54313266	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.A549	0.000	165	0%	75	36%	0	-	-	-	-	NULL
MYADM	91663	genome.wustl.edu	37	19	54377178	54377178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020818.1	+1	validated	p.R132H	0.003	263	0%	179	29.1%	177	32.2%	possibly_damaging(0.87)	tolerated(0.12)	deleterious(0.599)	HMMPfam_MARVEL
MYADM	91663	genome.wustl.edu	37	19	54377544	54377544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020818.1	+1	validated	p.A254V	0.992	323	0%	170	11.8%	154	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MARVEL
PRKCG	5582	genome.wustl.edu	37	19	54395771	54395771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002739.3	+1	reviewed	p.K232M	1.000	32	0%	22	22.7%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PRPF31	26121	genome.wustl.edu	37	19	54621812	54621812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015629.3	+1	reviewed	p.A52T	1.000	231	0%	134	23.9%	85	42.3%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
CNOT3	4849	genome.wustl.edu	37	19	54652017	54652017	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440571	+1	known	p.S265F	0.362	42	0%	22	22.7%	27	40.7%	-	-	-	NULL
CNOT3	4849	genome.wustl.edu	37	19	54656270	54656270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014516.2	+1	validated	p.P604H	1.000	179	0%	107	32.7%	83	36.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NOT2_3_5
TMC4	147798	genome.wustl.edu	37	19	54675767	54675767	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.A61	0.000	94	0%	49	26.5%	31	51.6%	-	-	-	NULL
LILRA6	79168	genome.wustl.edu	37	19	54746159	54746159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024318.2	-1	validated	p.A33D	1.000	223	0%	126	19%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF48726
LILRA3	11026	genome.wustl.edu	37	19	54802639	54802639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006865.3	-1	validated	p.R268C	0.000	129	0%	50	10%	1	0%	benign(0.006)	tolerated(0.17)	neutral(0.059)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
LILRA5	353514	genome.wustl.edu	37	19	54822802	54822802	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021250.2	-1	reviewed	p.L198	0.473	94	0%	62	33.9%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRA5	353514	genome.wustl.edu	37	19	54823387	54823387	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021250.2	-1	reviewed	p.E52	0.078	160	0%	100	25%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LAIR1	3903	genome.wustl.edu	37	19	54870220	54870220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444687	-1	known	p.G33V	0.000	91	1.1%	66	9.1%	0	-	unknown(0)	deleterious(0)	-	NULL
LENG8	114823	genome.wustl.edu	37	19	54964770	54964770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052925.2	+1	validated	p.G121S	0.599	51	0%	26	38.5%	42	35.7%	benign(0)	tolerated(1)	-	NULL
LENG9	94059	genome.wustl.edu	37	19	54973275	54973275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198988.1	-1	validated	p.E501K	0.001	96	0%	51	39.2%	13	38.4%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
LILRA1	11024	genome.wustl.edu	37	19	55106614	55106614	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006863.1	+1	provisional	p.T136	0.108	194	0%	96	29.2%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LILRB1	10859	genome.wustl.edu	37	19	55144678	55144678	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081637.1	+1	reviewed	p.A390	0.001	219	0%	132	25%	5	0%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
LILRB1	10859	genome.wustl.edu	37	19	55146744	55146744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081637.1	+1	reviewed	p.L533I	0.048	151	0.7%	68	29.4%	5	0%	probably_damaging(0.955)	tolerated(0.18)	neutral(0.455)	NULL
NLRP2	55655	genome.wustl.edu	37	19	55493563	55493563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017852.3	+1	validated	p.T166M	0.002	351	0%	179	31.3%	12	91.6%	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	superfamily_P-loop containing nucleoside triphosphate hydrolases
NLRP2	55655	genome.wustl.edu	37	19	55494974	55494974	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017852.3	+1	validated	p.D636	0.008	110	0%	54	35.2%	25	0%	-	-	-	NULL
NLRP2	55655	genome.wustl.edu	37	19	55494994	55494994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017852.3	+1	validated	p.C643Y	0.404	113	0.9%	61	32.8%	34	97%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GP6	51206	genome.wustl.edu	37	19	55543659	55543659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083899.1	-1	validated	p.R58H	1.000	58	0%	44	45.5%	0	-	possibly_damaging(0.945)	tolerated(0.26)	neutral(0.423)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PTPRH	5794	genome.wustl.edu	37	19	55707972	55707972	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.R725	0.917	106	0%	55	29.1%	0	-	-	-	-	NULL
PTPRH	5794	genome.wustl.edu	37	19	55716771	55716771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.G181E	0.000	353	0%	207	29.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPP6R1	22870	genome.wustl.edu	37	19	55758376	55758376	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.D32	1.000	104	0%	53	28.3%	37	32.4%	-	-	-	NULL
U2AF2	11338	genome.wustl.edu	37	19	56170606	56170606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007279.2	+1	reviewed	p.R27H	1.000	22	0%	24	20.8%	123	50.4%	possibly_damaging(0.944)	tolerated(0.12)	deleterious(0.649)	NULL
EPN1	29924	genome.wustl.edu	37	19	56204376	56204376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130071.1	+1	validated	p.A499T	0.730	113	0%	50	42%	145	48.2%	possibly_damaging(0.888)	tolerated(0.19)	neutral(0.397)	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243456	56243456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.A581T	0.000	271	0%	172	29.7%	0	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	superfamily_RNI-like
NLRP11	204801	genome.wustl.edu	37	19	56320320	56320320	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145007.3	-1	validated	p.N552	0.001	540	0%	299	27.8%	0	-	-	-	-	NULL
NLRP4	147945	genome.wustl.edu	37	19	56370289	56370289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.K510N	0.000	280	0.4%	128	10.9%	0	-	benign(0.004)	tolerated(0.45)	neutral(0.012)	NULL
NLRP4	147945	genome.wustl.edu	37	19	56370440	56370440	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.Q561*	0.006	160	0%	105	34.3%	0	-	-	-	-	NULL
NLRP4	147945	genome.wustl.edu	37	19	56373439	56373439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134444.4	+1	validated	p.S700R	0.000	246	0%	147	27.2%	0	-	benign(0.023)	deleterious(0.02)	neutral(0.384)	superfamily_RNI-like
NLRP5	126206	genome.wustl.edu	37	19	56544090	56544090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.A797V	0.800	97	0%	38	23.7%	0	-	possibly_damaging(0.76)	deleterious(0.04)	deleterious(0.630)	superfamily_SSF52047
NLRP5	126206	genome.wustl.edu	37	19	56569725	56569725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.M1140T	0.000	78	0%	44	15.9%	0	-	benign(0.001)	tolerated(0.46)	neutral(0.012)	superfamily_SSF52047
LOC646698	646698	genome.wustl.edu	37	19	56758270	56758270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725568.1	+1	model	p.A300T	0.000	290	0%	162	9.9%	0	-	-	-	-	NULL
LOC646698	646698	genome.wustl.edu	37	19	56758501	56758501	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725568.1	+1	model	p.E377*	1.000	123	0.8%	73	24.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF583	147949	genome.wustl.edu	37	19	56934724	56934724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152478.2	+1	validated	p.I233F	0.956	466	0%	315	30.2%	7	42.8%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF471	57573	genome.wustl.edu	37	19	57037213	57037213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.H593N	0.986	262	0%	167	21%	5	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF71	58491	genome.wustl.edu	37	19	57133099	57133099	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021216.4	+1	validated	p.H148	0.807	162	0%	109	26.6%	7	42.8%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57175321	57175321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005850.1	-1	provisional	p.R438W	0.730	70	0%	24	37.5%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_SSF57667
ZNF835	90485	genome.wustl.edu	37	19	57175946	57175946	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005850.1	-1	provisional	p.T229	0.003	34	0%	16	50%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEG3	5178	genome.wustl.edu	37	19	57325757	57325757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006210.2	-1	reviewed	p.K1351N	0.562	300	0%	156	29.5%	1	0%	possibly_damaging(0.858)	deleterious(0.03)	deleterious(0.696)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
USP29	57663	genome.wustl.edu	37	19	57640547	57640547	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020903.2	+1	validated	p.K168	0.004	347	0%	255	29.8%	0	-	-	-	-	NULL
ZIM3	114026	genome.wustl.edu	37	19	57649879	57649879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052882.1	-1	provisional	p.D35N	0.678	618	0.2%	339	23.6%	0	-	possibly_damaging(0.435)	tolerated(0.11)	neutral(0.413)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
DUXA	503835	genome.wustl.edu	37	19	57666657	57666657	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012729.1	-1	validated	p.G174	0.001	158	0%	75	17.3%	0	-	-	-	-	NULL
ZNF548	147694	genome.wustl.edu	37	19	57910873	57910873	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152909.3	+1	validated	p.C406	0.000	966	0.2%	541	31.8%	10	90%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF17	7565	genome.wustl.edu	37	19	57931103	57931104	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006959.2	+1	validated	p.A82fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF17	7565	genome.wustl.edu	37	19	57932468	57932468	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006959.2	+1	validated	p.R536	0.000	473	0%	262	27.9%	5	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF749	388567	genome.wustl.edu	37	19	57954785	57954785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001023561.2	+1	provisional	p.S90I	0.002	577	0%	252	30.2%	3	66.6%	probably_damaging(0.986)	tolerated(0.17)	deleterious(0.493)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
ZNF749	388567	genome.wustl.edu	37	19	57956171	57956171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001023561.2	+1	provisional	p.R552M	0.003	687	0.3%	389	30.6%	6	33.3%	unknown(0)	deleterious(0.02)	-	superfamily_C2H2 and C2HC zinc fingers
ZNF749	388567	genome.wustl.edu	37	19	57956684	57956684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001023561.2	+1	provisional	p.P723H	0.921	760	0%	432	28.7%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
VN1R1	57191	genome.wustl.edu	37	19	57967566	57967566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020633.2	-1	reviewed	p.V97I	0.065	266	0%	122	29.5%	0	-	possibly_damaging(0.896)	tolerated(0.08)	deleterious(0.653)	superfamily_Family A G protein-coupled receptor-like
ZIK1	284307	genome.wustl.edu	37	19	58101972	58101972	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010879.2	+1	provisional	p.R265	0.994	353	0%	204	28.4%	0	-	-	-	-	superfamily_Multiheme cytochromes
ZIK1	284307	genome.wustl.edu	37	19	58102328	58102328	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010879.2	+1	provisional	p.Q383	0.026	386	0%	230	24.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers
ZNF530	348327	genome.wustl.edu	37	19	58117392	58117392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020880.3	+1	validated	p.P167S	0.000	263	0%	141	10.6%	2	0%	possibly_damaging(0.747)	tolerated(0.67)	neutral(0.277)	superfamily_SSF57667
ZNF134	7693	genome.wustl.edu	37	19	58131640	58131640	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003435.3	+1	provisional	p.P51	0.152	315	0%	186	26.9%	15	73.3%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF551	90233	genome.wustl.edu	37	19	58198007	58198007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.H106Y	0.003	559	0%	271	24.4%	3	66.6%	benign(0.394)	tolerated(0.1)	neutral(0.413)	NULL
ZNF154	7710	genome.wustl.edu	37	19	58216270	58216270	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085384.1	-1	validated	p.C37*	0.164	1214	0.1%	571	26.6%	1	0%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF776	284309	genome.wustl.edu	37	19	58265272	58265272	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.R258	1.000	339	0.3%	184	21.7%	6	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF776	284309	genome.wustl.edu	37	19	58265938	58265938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.Q480H	0.034	385	0.5%	221	26.7%	11	36.3%	possibly_damaging(0.811)	deleterious(0.03)	deleterious(0.670)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF776	284309	genome.wustl.edu	37	19	58266021	58266021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173632.3	+1	validated	p.R508Q	0.152	351	0.3%	200	30.5%	9	77.7%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF552	79818	genome.wustl.edu	37	19	58324693	58324693	+	Silent	SNP	C	C	T	rs417518		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024762.3	-1	validated	p.T43	0.996	390	0.5%	218	27.1%	16	18.7%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ENSG00000204517	0	genome.wustl.edu	37	19	58353163	58353163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442832	+1	known	p.R374H	0.000	103	0%	63	41.3%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF587	84914	genome.wustl.edu	37	19	58371294	58371294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339656	+1	known	p.S505Y	0.000	764	0%	468	31.2%	5	40%	benign(0.108)	tolerated(0.12)	neutral(0.269)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF814	730051	genome.wustl.edu	37	19	58384615	58384615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144989.1	-1	validated	p.P715S	0.999	193	0%	111	30.6%	1	0%	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	superfamily_C2H2 and C2HC zinc fingers
ZNF418	147686	genome.wustl.edu	37	19	58438362	58438362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.R396Q	0.984	674	0%	385	26.2%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
ZNF418	147686	genome.wustl.edu	37	19	58438807	58438807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.H248Y	0.040	403	0%	216	15.3%	3	66.6%	benign(0.406)	deleterious(0)	deleterious(0.575)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF256	10172	genome.wustl.edu	37	19	58453500	58453500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005773.2	-1	validated	p.R226C	0.000	436	0%	273	34.1%	3	33.3%	possibly_damaging(0.939)	deleterious(0.02)	deleterious(0.768)	superfamily_C2H2 and C2HC zinc fingers
ZNF606	80095	genome.wustl.edu	37	19	58499586	58499586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025027.3	-1	validated	p.R130H	0.049	225	0%	122	24.6%	10	70%	possibly_damaging(0.646)	tolerated(0.21)	neutral(0.271)	NULL
ZNF606	80095	genome.wustl.edu	37	19	58499587	58499587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025027.3	-1	validated	p.R130C	0.004	226	0%	122	27.9%	10	10%	possibly_damaging(0.646)	tolerated(0.06)	deleterious(0.549)	NULL
ZNF135	7694	genome.wustl.edu	37	19	58578881	58578881	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391699	+1	known	p.S361N	0.197	169	0%	96	24%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF274	10782	genome.wustl.edu	37	19	58723852	58723852	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133502.1	+1	reviewed	p.T435I	0.000	348	0%	204	13.7%	28	14.2%	-	-	-	NULL
ZSCAN22	342945	genome.wustl.edu	37	19	58850365	58850365	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181846.2	+1	validated	p.D383	0.000	144	0%	88	10.2%	7	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF584	201514	genome.wustl.edu	37	19	58928523	58928523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173548.1	+1	provisional	p.A213V	0.790	188	0%	90	28.9%	8	62.5%	benign(0.013)	deleterious(0)	neutral(0.445)	superfamily_SSF57667
ZNF324B	388569	genome.wustl.edu	37	19	58966496	58966496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391696	+1	known	p.P52H	0.000	106	0.9%	68	26.5%	0	-	unknown(0)	-	-	NULL
ZNF324B	388569	genome.wustl.edu	37	19	58966928	58966928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207395.2	+1	validated	p.A206V	0.001	54	0%	26	19.2%	3	66.6%	benign(0.033)	tolerated(0.61)	neutral(0.005)	NULL
ZNF324	25799	genome.wustl.edu	37	19	58982161	58982161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014347.1	+1	provisional	p.T101I	0.001	204	0%	91	23.1%	4	25%	benign(0.282)	tolerated(0.18)	neutral(0.142)	NULL
ZNF324	25799	genome.wustl.edu	37	19	58983210	58983210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014347.1	+1	provisional	p.R451W	1.000	60	0%	28	14.3%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2H2 and C2HC zinc fingers
ZNF446	55663	genome.wustl.edu	37	19	58989019	58989019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017908.2	+1	provisional	p.L120M	0.758	59	0%	27	25.9%	15	26.6%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMSmart_SCAN
TRIM28	10155	genome.wustl.edu	37	19	59059706	59059706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005762.2	+1	reviewed	p.V383M	0.979	81	0%	33	39.4%	307	36.4%	probably_damaging(0.981)	tolerated(0.23)	neutral(0.467)	NULL
CHMP2A	27243	genome.wustl.edu	37	19	59063042	59063042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014453.2	-1	validated	p.R215W	1.000	47	0%	23	52.2%	133	32.3%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
DEFB126	81623	genome.wustl.edu	37	20	126259	126259	+	Missense_Mutation	SNP	G	G	A	rs189212690	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030931.2	+1	reviewed	p.A88T	0.000	520	0%	345	31.3%	0	-	unknown(0)	tolerated(1)	-	NULL
ZCCHC3	85364	genome.wustl.edu	37	20	279368	279368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382352	+1	known	p.H381D	1.000	48	0%	32	12.5%	29	44.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC,superfamily_SSF57756
TRIB3	57761	genome.wustl.edu	37	20	368789	368789	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021158.3	+1	reviewed	p.P45	0.234	62	0%	26	15.4%	52	44.2%	-	-	-	NULL
RBCK1	10616	genome.wustl.edu	37	20	400055	400055	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382181	+1	known	p.P59Q	0.000	9	0.000	5	0.800	25	48%	unknown(0)	-	-	NULL
TBC1D20	128637	genome.wustl.edu	37	20	419842	419842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144628.2	-1	validated	p.E289G	1.000	79	0%	58	25.9%	36	36.1%	possibly_damaging(0.89)	deleterious(0)	deleterious(0.794)	superfamily_Ypt/Rab-GAP domain of gyp1p
CSNK2A1	1457	genome.wustl.edu	37	20	472920	472920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001895.3	-1	reviewed	p.P200H	1.000	293	0%	186	25.8%	86	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CSNK2A1	1457	genome.wustl.edu	37	20	478403	478403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001895.3	-1	reviewed	p.D130Y	1.000	186	0%	139	12.9%	63	17.4%	possibly_damaging(0.931)	tolerated(0.05)	deleterious(0.723)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CSNK2A1	1457	genome.wustl.edu	37	20	479937	479937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001895.3	-1	reviewed	p.A110T	1.000	164	0%	117	14.5%	80	22.5%	possibly_damaging(0.447)	tolerated(0.07)	neutral(0.465)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SLC52A3	113278	genome.wustl.edu	37	20	745952	745952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033409.3	-1	validated	p.A156V	1.000	64	0%	21	19%	11	27.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NSFL1C	55968	genome.wustl.edu	37	20	1433203	1433203	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016143.3	-1	reviewed	p.D240	0.867	362	0%	199	33.2%	105	40%	-	-	-	HMMPfam_SEP,HMMSmart_SM00553,superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain
SIRPA	140885	genome.wustl.edu	37	20	1918206	1918206	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040022.1	+1	reviewed	p.R503W	1.000	125	0%	87	20.7%	39	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CPXM1	56265	genome.wustl.edu	37	20	2777049	2777049	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019609.4	-1	reviewed	p.N362	0.977	190	0%	77	27.3%	9	0%	-	-	-	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
FAM113A	64773	genome.wustl.edu	37	20	2816138	2816138	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022760.3	-1	predicted	p.P445	0.932	95	0%	67	11.9%	13	15.3%	-	-	-	NULL
FAM113A	64773	genome.wustl.edu	37	20	2820477	2820477	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022760.3	-1	predicted	p.Q28*	1.000	66	0%	37	27%	13	23%	-	-	-	NULL
VPS16	64601	genome.wustl.edu	37	20	2845103	2845103	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022575.2	+1	reviewed	p.R605*	1.000	292	0%	151	32.5%	31	6.4%	-	-	-	HMMPfam_Vps16_C
PTPRA	5786	genome.wustl.edu	37	20	3008484	3008484	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002836.3	+1	reviewed	p.G639	0.993	192	0%	103	20.4%	69	36.2%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
FASTKD5	60493	genome.wustl.edu	37	20	3127491	3127491	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.P742	0.479	229	0.4%	185	18.9%	32	25%	-	-	-	HMMPfam_RAP
FASTKD5	60493	genome.wustl.edu	37	20	3128988	3128988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021826.4	-1	validated	p.Q243H	1.000	167	0%	92	12%	32	25%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
ATRN	8455	genome.wustl.edu	37	20	3581673	3581673	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139321.2	+1	reviewed	e23+2	1.000	203	0%	140	11.4%	5	100%	-	-	-	-
HSPA12B	116835	genome.wustl.edu	37	20	3726219	3726219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052970.3	+1	reviewed	p.R178H	1.000	44	0%	21	38.1%	4	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_SSF53067
C20orf27	54976	genome.wustl.edu	37	20	3736209	3736209	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039140.1	-1	validated	p.L95	0.998	39	0%	26	23.1%	76	38.1%	-	-	-	NULL
PANK2	80025	genome.wustl.edu	37	20	3897573	3897573	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153638.2	+1	reviewed	e5-1	1.000	159	0%	108	24.1%	1	100%	-	-	-	-
SMOX	54498	genome.wustl.edu	37	20	4163381	4163381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175839.1	+1	reviewed	p.R419C	1.000	116	0%	48	18.8%	26	38.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
PROKR2	128674	genome.wustl.edu	37	20	5282877	5282877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144773.2	-1	reviewed	p.A322T	1.000	176	0%	116	11.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
MCM8	84515	genome.wustl.edu	37	20	5939314	5939314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032485.4	+1	reviewed	p.A244V	0.716	214	0%	125	12%	10	20%	benign(0)	tolerated(0.31)	neutral(0.027)	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
MCM8	84515	genome.wustl.edu	37	20	5966722	5966722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032485.4	+1	reviewed	p.L703S	0.956	251	0%	143	11.2%	12	25%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases
CRLS1	54675	genome.wustl.edu	37	20	5996117	5996117	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019095.4	+1	validated	p.T185	1.000	299	0%	204	20.6%	36	63.8%	-	-	-	HMMPfam_CDP-OH_P_transf
FERMT1	55612	genome.wustl.edu	37	20	6064774	6064774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017671.4	-1	reviewed	p.A544V	1.000	88	0%	34	26.5%	2	0%	possibly_damaging(0.93)	tolerated(0.29)	neutral(0.406)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
BMP2	650	genome.wustl.edu	37	20	6758934	6758934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001200.2	+1	reviewed	p.R130Q	1.000	231	0%	148	29.7%	1	0%	benign(0.008)	tolerated(0.33)	neutral(0.024)	HMMPfam_TGFb_propeptide
ANKRD5	63926	genome.wustl.edu	37	20	10023811	10023811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.R130C	1.000	283	0%	193	25.4%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00248,superfamily_Ankyrin repeat
ANKRD5	63926	genome.wustl.edu	37	20	10030316	10030316	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.Q367*	0.014	186	0%	145	31%	8	0%	-	-	-	superfamily_Ankyrin repeat,superfamily_EF-hand
ANKRD5	63926	genome.wustl.edu	37	20	10030573	10030573	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.P452	0.000	270	0.4%	196	30.6%	7	85.7%	-	-	-	superfamily_Ankyrin repeat
ANKRD5	63926	genome.wustl.edu	37	20	10035113	10035113	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.L680	0.000	156	0%	163	33.1%	7	42.8%	-	-	-	NULL
MKKS	8195	genome.wustl.edu	37	20	10389389	10389389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018848.2	-1	reviewed	p.V350M	0.065	102	0%	64	31.2%	45	57.7%	possibly_damaging(0.682)	deleterious(0.02)	deleterious(0.626)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like
C20orf94	128710	genome.wustl.edu	37	20	10603861	10603861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009608.1	+1	validated	p.T354M	0.000	249	1.2%	151	25.8%	4	50%	possibly_damaging(0.943)	tolerated(0.12)	deleterious(0.648)	NULL
JAG1	182	genome.wustl.edu	37	20	10620541	10620541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000214.2	-1	reviewed	p.A1088S	0.998	48	0%	38	31.6%	37	56.7%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
BTBD3	22903	genome.wustl.edu	37	20	11903745	11903745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014962.2	+1	validated	p.A334T	1.000	235	0%	166	30.7%	29	44.8%	benign(0.371)	tolerated(0.12)	neutral(0.379)	NULL
SPTLC3	55304	genome.wustl.edu	37	20	13074169	13074169	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018327.2	+1	validated	p.S257	0.793	214	0%	118	35.6%	0	-	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ISM1	140862	genome.wustl.edu	37	20	13279751	13279751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080826.1	+1	validated	p.R347H	1.000	40	0%	23	30.4%	5	0%	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	HMMPfam_AMOP,HMMSmart_AMOP
ISM1	140862	genome.wustl.edu	37	20	13279910	13279910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080826.1	+1	validated	p.A400V	1.000	74	0%	28	32.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMOP,HMMSmart_AMOP
TASP1	55617	genome.wustl.edu	37	20	13415697	13415697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017714.2	-1	reviewed	p.L364F	1.000	85	0%	67	17.9%	20	50%	benign(0.132)	tolerated(0.23)	neutral(0.053)	superfamily_SSF56235
FLRT3	23767	genome.wustl.edu	37	20	14306253	14306253	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013281.2	-1	reviewed	p.R634*	1.000	274	0%	241	29.9%	1	100%	-	-	-	NULL
MACROD2	140733	genome.wustl.edu	37	20	15866408	15866408	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080676.5	+1	validated	e10-1	1.000	498	0%	476	27.7%	0	-	-	-	-	-
KIF16B	55614	genome.wustl.edu	37	20	16253905	16253905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.T1316M	1.000	128	0%	74	13.5%	12	8.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16337097	16337097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.R1167W	1.000	148	0.7%	98	25.5%	5	40%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16348464	16348464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408042	-1	known	p.R1169H	0.000	87	0%	32	21.9%	6	16.6%	possibly_damaging(0.905)	tolerated(0.2)	neutral(0.408)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16360666	16360666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024704.3	-1	validated	p.R661C	1.000	433	0%	281	27.4%	4	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PCSK2	5126	genome.wustl.edu	37	20	17240948	17240948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002594.2	+1	reviewed	p.R81C	1.000	373	0%	230	27.8%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	superfamily_Protease propeptides/inhibitors
LOC100286995	100286995	genome.wustl.edu	37	20	17616164	17616164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344180.1	+1	model	p.G25V	0.000	23	0%	13	38.5%	0	-	-	-	-	NULL
RRBP1	6238	genome.wustl.edu	37	20	17639669	17639669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000246043	-1	known	p.A495V	0.000	51	0%	26	50%	42	35.7%	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
CSRP2BP	57325	genome.wustl.edu	37	20	18142614	18142614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020536.4	+1	reviewed	p.A278V	0.996	598	0%	289	29.4%	13	46.1%	benign(0.188)	deleterious(0.01)	neutral(0.423)	NULL
SLC24A3	57419	genome.wustl.edu	37	20	19701681	19701681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020689.3	+1	validated	p.G611D	1.000	255	0%	136	26.5%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_Ca_ex
RIN2	54453	genome.wustl.edu	37	20	19977394	19977394	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018993.2	+1	reviewed	p.R758*	0.001	48	2.1%	29	41.4%	21	14.2%	-	-	-	HMMSmart_SM00167,superfamily_VPS9 domain (Pfam 02204)
CRNKL1	51340	genome.wustl.edu	37	20	20025982	20025982	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016652.4	-1	reviewed	p.A418	1.000	270	0%	129	27.1%	15	80%	-	-	-	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like
CRNKL1	51340	genome.wustl.edu	37	20	20028412	20028412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016652.4	-1	reviewed	p.R368*	0.989	134	0%	82	22%	36	8.3%	-	-	-	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like
C20orf26	26074	genome.wustl.edu	37	20	20079389	20079389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.G264R	0.999	476	0%	241	28.6%	1	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20269313	20269313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.A953T	0.995	554	0.2%	330	11.2%	1	0%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	superfamily_FAD/NAD(P)-binding domain
RALGAPA2	57186	genome.wustl.edu	37	20	20475915	20475915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020343.2	-1	validated	p.R1738H	1.000	288	0%	185	26.5%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
RALGAPA2	57186	genome.wustl.edu	37	20	20484007	20484007	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430436	-1	known	p.P1549H	0.580	163	0%	75	24%	14	7.1%	-	-	-	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
XRN2	22803	genome.wustl.edu	37	20	21312264	21312264	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.R214	1.000	175	0%	151	10.6%	60	11.6%	-	-	-	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21312419	21312419	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.H221	0.985	400	0%	321	36.8%	49	38.7%	-	-	-	HMMPfam_XRN_N
XRN2	22803	genome.wustl.edu	37	20	21314629	21314629	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.T374	0.973	227	0%	184	32.1%	64	53.1%	-	-	-	NULL
XRN2	22803	genome.wustl.edu	37	20	21329054	21329054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.L617I	1.000	304	0%	180	26.1%	55	41.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NKX2-2	4821	genome.wustl.edu	37	20	21492616	21492616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002509.2	-1	reviewed	p.T256N	1.000	21	0.000	7	0.571	0	-	unknown(0)	deleterious(0.01)	-	NULL
PAX1	5075	genome.wustl.edu	37	20	21687222	21687222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006192.3	+1	validated	p.G145S	1.000	42	0%	18	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like
SSTR4	6754	genome.wustl.edu	37	20	23016360	23016360	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.T80	0.904	81	0%	24	58.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CD93	22918	genome.wustl.edu	37	20	23065135	23065135	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012072.3	-1	reviewed	p.D565	0.000	89	0%	41	43.9%	4	0%	-	-	-	NULL
GZF1	64412	genome.wustl.edu	37	20	23350249	23350249	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022482.3	+1	validated	p.C552	0.998	197	0%	106	21.7%	12	8.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CST9L	128821	genome.wustl.edu	37	20	23549071	23549071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080610.2	-1	reviewed	p.W6L	0.000	61	0%	35	28.6%	0	-	possibly_damaging(0.602)	tolerated(0.83)	neutral(0.209)	NULL
CST3	1471	genome.wustl.edu	37	20	23614595	23614595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000099.2	-1	reviewed	p.Q133H	0.000	164	0.6%	65	35.4%	1222	31.3%	benign(0.185)	tolerated(0.13)	neutral(0.270)	HMMSmart_CY,superfamily_SSF54403
ACSS1	84532	genome.wustl.edu	37	20	25038445	25038445	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032501.2	-1	reviewed	p.G98	1.000	35	0%	18	44.4%	5	0%	-	-	-	superfamily_Acetyl-CoA synthetase-like
ENTPD6	955	genome.wustl.edu	37	20	25187189	25187189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001247.2	+1	reviewed	p.R6H	0.000	215	0%	103	16.5%	13	23%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ENTPD6	955	genome.wustl.edu	37	20	25187856	25187856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001247.2	+1	reviewed	p.A67T	0.236	59	1.7%	30	26.7%	56	30.3%	possibly_damaging(0.83)	deleterious(0.02)	deleterious(0.699)	NULL
ENTPD6	955	genome.wustl.edu	37	20	25190495	25190495	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433417	+1	known	p.R50H	0.975	672	0.1%	346	10.7%	72	25%	-	-	-	HMMPfam_GDA1_CD39
PYGB	5834	genome.wustl.edu	37	20	25257335	25257335	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002862.3	+1	reviewed	p.T238	0.199	73	0%	19	47.4%	41	51.2%	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
PYGB	5834	genome.wustl.edu	37	20	25277046	25277046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002862.3	+1	reviewed	p.A807V	1.000	41	0%	22	31.8%	81	33.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Phosphorylase,superfamily_SSF53756
NINL	22981	genome.wustl.edu	37	20	25456924	25456924	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025176.4	-1	validated	p.A1001	0.000	66	0%	36	33.3%	2	100%	-	-	-	NULL
NINL	22981	genome.wustl.edu	37	20	25472060	25472060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025176.4	-1	validated	p.A471V	0.000	62	0%	21	42.9%	2	100%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
NINL	22981	genome.wustl.edu	37	20	25472143	25472143	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025176.4	-1	validated	p.Y443	0.914	89	0%	49	30.6%	3	33.3%	-	-	-	NULL
ZNF337	26152	genome.wustl.edu	37	20	25657546	25657546	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015655.2	-1	validated	p.S126	0.000	459	0%	326	31.6%	6	33.3%	-	-	-	NULL
MYLK2	85366	genome.wustl.edu	37	20	30421540	30421540	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033118.3	+1	reviewed	p.S577	0.972	88	0%	59	28.8%	0	-	-	-	-	NULL
KIF3B	9371	genome.wustl.edu	37	20	30898181	30898181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004798.2	+1	reviewed	p.R201C	1.000	229	0%	129	24%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASXL1	171023	genome.wustl.edu	37	20	31024252	31024252	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015338.5	+1	reviewed	p.V1246D	0.000	161	0%	83	28.9%	15	26.6%	benign(0.071)	deleterious(0.01)	neutral(0.411)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31383337	31383337	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006892.3	+1	reviewed	p.R417*	1.000	190	0%	84	31%	3	33.3%	-	-	-	NULL
BPIFB2	80341	genome.wustl.edu	37	20	31607515	31607515	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025227.1	+1	reviewed	p.A347S	0.002	40	0%	21	19%	2	0%	benign(0.009)	tolerated(0.37)	neutral(0.019)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
BPIFB4	149954	genome.wustl.edu	37	20	31688238	31688238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182519.2	+1	validated	p.E526K	0.155	96	0%	37	13.5%	0	-	benign(0.014)	tolerated(0.22)	neutral(0.043)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
BPIFA1	51297	genome.wustl.edu	37	20	31828155	31828155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016583.3	+1	reviewed	p.H182R	0.819	630	0.2%	403	27.8%	0	-	possibly_damaging(0.836)	tolerated(0.35)	neutral(0.340)	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
BPIFB1	92747	genome.wustl.edu	37	20	31890200	31890200	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033197.2	+1	reviewed	p.I321	0.001	348	0%	164	28.7%	6	0%	-	-	-	superfamily_Bactericidal permeability-increasing protein BPI
CDK5RAP1	51654	genome.wustl.edu	37	20	31954807	31954807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016408.2	-1	reviewed	p.R467Q	0.997	249	0%	188	27.1%	30	50%	benign(0.265)	tolerated(0.23)	neutral(0.069)	HMMSmart_SM00729,superfamily_Radical SAM enzymes
CDK5RAP1	51654	genome.wustl.edu	37	20	31967358	31967358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016408.2	-1	reviewed	p.R339H	1.000	163	0%	95	18.9%	27	37%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
ZNF341	84905	genome.wustl.edu	37	20	32332916	32332916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032819.3	+1	validated	p.E50D	1.000	193	0%	117	13.7%	6	33.3%	benign(0.019)	tolerated(0.17)	neutral(0.060)	NULL
ZNF341	84905	genome.wustl.edu	37	20	32336830	32336830	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032819.3	+1	validated	p.A147	1.000	140	0%	63	19%	4	25%	-	-	-	NULL
ZNF341	84905	genome.wustl.edu	37	20	32341133	32341133	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032819.3	+1	validated	p.N215	0.925	29	0%	12	41.7%	4	25%	-	-	-	NULL
PIGU	128869	genome.wustl.edu	37	20	33148678	33148678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080476.4	-1	reviewed	p.L434F	1.000	32	0%	14	35.7%	46	45.6%	possibly_damaging(0.761)	tolerated(0.14)	deleterious(0.531)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33329591	33329591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.S1490L	1.000	197	0%	105	26.7%	39	46.1%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33329849	33329849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.S1404Y	0.997	285	0%	143	32.2%	24	54.1%	benign(0.255)	deleterious(0)	deleterious(0.471)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33331077	33331077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.A995T	1.000	94	0%	66	22.7%	29	20.6%	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33338167	33338167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.G611C	1.000	170	0%	86	40.7%	21	52.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NCOA6	23054	genome.wustl.edu	37	20	33345024	33345024	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.G509	1.000	371	0.3%	206	31.1%	6	16.6%	-	-	-	NULL
GGT7	2686	genome.wustl.edu	37	20	33444645	33444645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178026.2	-1	reviewed	p.A356T	0.960	53	0%	23	21.7%	18	16.6%	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_G_glu_transpept
GGT7	2686	genome.wustl.edu	37	20	33449342	33449342	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178026.2	-1	reviewed	p.D194V	1.000	196	0%	85	27.1%	4	75%	possibly_damaging(0.494)	deleterious(0.01)	deleterious(0.570)	HMMPfam_G_glu_transpept
ACSS2	55902	genome.wustl.edu	37	20	33470666	33470666	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018677.3	+1	reviewed	p.N83T	1.000	248	0.8%	164	36.6%	19	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF56801
ACSS2	55902	genome.wustl.edu	37	20	33513958	33513958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018677.3	+1	reviewed	p.A593T	0.935	477	0.2%	253	29.2%	68	47%	benign(0.248)	tolerated(0.2)	neutral(0.074)	HMMPfam_AMP-binding,superfamily_SSF56801
GSS	2937	genome.wustl.edu	37	20	33539538	33539538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000178.2	-1	reviewed	p.T40A	1.000	36	0%	28	21.4%	70	48.5%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_GSH_synth_ATP,superfamily_SSF56059
EDEM2	55741	genome.wustl.edu	37	20	33714066	33714066	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018217.2	-1	validated	p.W319*	1.000	139	0%	69	24.6%	15	13.3%	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases
GDF5	8200	genome.wustl.edu	37	20	34022222	34022222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000557.2	-1	reviewed	p.R331C	0.976	35	2.9%	20	30%	1	0%	possibly_damaging(0.755)	deleterious(0)	deleterious(0.723)	HMMPfam_TGFb_propeptide
CPNE1	8904	genome.wustl.edu	37	20	34220548	34220548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003915.4	-1	reviewed	p.R72H	1.000	732	0.1%	414	28.3%	112	50%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
C20orf4	25980	genome.wustl.edu	37	20	34828428	34828428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015511.3	+1	predicted	p.T213M	0.721	174	0%	108	27.8%	49	42.8%	possibly_damaging(0.861)	tolerated(0.1)	deleterious(0.619)	HMMPfam_AAR2
C20orf4	25980	genome.wustl.edu	37	20	34832753	34832753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015511.3	+1	predicted	p.L298I	1.000	203	0.5%	101	36.6%	53	52.8%	probably_damaging(0.954)	tolerated(0.11)	deleterious(0.669)	HMMPfam_AAR2
DLGAP4	22839	genome.wustl.edu	37	20	35125434	35125434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014902.4	+1	reviewed	p.A659T	0.876	125	0.8%	68	30.9%	59	44%	benign(0.002)	tolerated(0.62)	neutral(0.004)	HMMPfam_GKAP
C20orf118	140711	genome.wustl.edu	37	20	35504591	35504591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080628.1	+1	predicted	p.R5H	0.756	83	0%	54	37%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
C20orf118	140711	genome.wustl.edu	37	20	35517672	35517672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080628.1	+1	predicted	p.W177C	0.999	226	0%	121	20.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TLD,HMMSmart_TLDc
SAMHD1	25939	genome.wustl.edu	37	20	35559208	35559208	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015474.3	-1	reviewed	p.R194*	0.887	450	0.2%	306	11.4%	74	2.7%	-	-	-	HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604
RPN2	6185	genome.wustl.edu	37	20	35826803	35826803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002951.3	+1	reviewed	p.A71S	1.000	429	0%	249	27.7%	550	46.3%	possibly_damaging(0.918)	tolerated(0.06)	deleterious(0.691)	HMMPfam_Ribophorin_II
CTNNBL1	56259	genome.wustl.edu	37	20	36431379	36431379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030877.3	+1	reviewed	p.T381I	1.000	163	0%	126	22.2%	32	25%	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	superfamily_ARM repeat
TTI1	9675	genome.wustl.edu	37	20	36641283	36641283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.E312D	0.863	285	0%	185	13.5%	16	18.7%	benign(0.005)	tolerated(0.27)	neutral(0.034)	superfamily_ARM-type_fold
TTI1	9675	genome.wustl.edu	37	20	36641946	36641946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.E91D	0.115	223	0%	123	26.8%	13	53.8%	benign(0)	tolerated(0.52)	neutral(0.009)	superfamily_ARM-type_fold
TGM2	7052	genome.wustl.edu	37	20	36766685	36766685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004613.2	-1	reviewed	p.S482N	0.075	186	0%	80	37.5%	53	3.7%	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_Transglut_C,superfamily_Transglutaminase two C-terminal domains
FAM83D	81610	genome.wustl.edu	37	20	37580570	37580570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030919.2	+1	validated	p.A419T	0.656	123	0%	64	31.2%	25	40%	benign(0.048)	deleterious(0.04)	neutral(0.352)	NULL
DHX35	60625	genome.wustl.edu	37	20	37653938	37653938	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021931.2	+1	reviewed	p.A579	0.000	572	0%	361	13.3%	8	12.5%	-	-	-	NULL
MAFB	9935	genome.wustl.edu	37	20	39317238	39317238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005461.3	-1	reviewed	p.L85M	1.000	48	0%	19	26.3%	29	17.2%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	HMMPfam_Maf_N
PLCG1	5335	genome.wustl.edu	37	20	39794395	39794395	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002660.2	+1	reviewed	p.T576	0.134	47	0%	26	23.1%	30	30%	-	-	-	HMMPfam_SH2,HMMSmart_SH2,HMMSmart_PH,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF50729,superfamily_SSF55550
ZHX3	23051	genome.wustl.edu	37	20	39831625	39831625	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421422	-1	known	p.P353S	0.933	341	0%	197	25.9%	4	25%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZHX3	23051	genome.wustl.edu	37	20	39832348	39832348	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421422	-1	known	p.A112T	0.593	157	0%	74	29.7%	3	0%	-	-	-	NULL
ZHX3	23051	genome.wustl.edu	37	20	39833479	39833479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015035.3	-1	reviewed	p.E26D	0.997	163	0.6%	101	26.7%	2	100%	probably_damaging(0.965)	tolerated(0.19)	neutral(0.456)	NULL
CHD6	84181	genome.wustl.edu	37	20	40033729	40033729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.P2551L	0.787	158	0%	84	29.8%	31	22.5%	benign(0.411)	tolerated(0.05)	deleterious(0.478)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050051	40050051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.D1742Y	0.003	339	0%	148	27%	10	50%	benign(0.242)	deleterious(0)	deleterious(0.469)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050176	40050176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.P1700H	0.998	243	0.8%	125	27.2%	14	42.8%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CHD6	84181	genome.wustl.edu	37	20	40079605	40079605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.L1222I	1.000	148	0%	104	29.8%	14	50%	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
CHD6	84181	genome.wustl.edu	37	20	40086062	40086062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.A891T	1.000	76	0%	43	20.9%	8	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTPRT	11122	genome.wustl.edu	37	20	40727176	40727176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133170.3	-1	reviewed	p.A1263V	0.997	100	0%	57	35.1%	0	-	possibly_damaging(0.49)	deleterious(0.05)	deleterious(0.508)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRT	11122	genome.wustl.edu	37	20	41408886	41408886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133170.3	-1	reviewed	p.D180	1.000	300	0.3%	216	29.6%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
LOC100287002	100287002	genome.wustl.edu	37	20	42087916	42087916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343704.1	-1	model	p.G429D	1.000	124	0%	53	18.9%	38	57.8%	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
SGK2	10110	genome.wustl.edu	37	20	42203580	42203580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016276.3	+1	reviewed	p.P270H	1.000	47	0%	35	14.3%	1	0%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SGK2	10110	genome.wustl.edu	37	20	42205014	42205014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016276.3	+1	reviewed	p.D342Y	1.000	91	1.1%	62	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SGK2	10110	genome.wustl.edu	37	20	42213499	42213499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016276.3	+1	reviewed	p.P376H	1.000	431	0%	215	26.5%	0	-	benign(0.054)	tolerated(0.07)	neutral(0.323)	HMMSmart_SM00133,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_C
MYBL2	4605	genome.wustl.edu	37	20	42328640	42328640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002466.2	+1	reviewed	p.A303T	0.543	81	0%	42	28.6%	97	43.2%	benign(0.009)	tolerated(0.78)	neutral(0.002)	NULL
MYBL2	4605	genome.wustl.edu	37	20	42331264	42331264	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002466.2	+1	reviewed	p.S362	0.000	229	0%	120	19.2%	134	46.2%	-	-	-	NULL
JPH2	57158	genome.wustl.edu	37	20	42815203	42815203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020433.4	-1	reviewed	p.V48A	1.000	154	0%	67	13.4%	0	-	benign(0.196)	tolerated(0.08)	neutral(0.319)	HMMPfam_MORN,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
GDAP1L1	78997	genome.wustl.edu	37	20	42893229	42893229	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445952	+1	known	p.A210V	0.172	32	0%	14	50%	0	-	-	-	-	NULL
HNF4A	3172	genome.wustl.edu	37	20	43042421	43042421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000457.3	+1	reviewed	p.A158V	1.000	76	0%	36	30.6%	5	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_Nuclear receptor ligand-binding domain
ADA	100	genome.wustl.edu	37	20	43252948	43252948	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000022.2	-1	reviewed	p.E167	1.000	69	0%	25	36%	1	100%	-	-	-	HMMPfam_A_deaminase,superfamily_SSF51556
PABPC1L	80336	genome.wustl.edu	37	20	43552831	43552831	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124756.1	+1	provisional	p.D302	0.994	218	0%	81	17.3%	3	33.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PABPC1L	80336	genome.wustl.edu	37	20	43559189	43559189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124756.1	+1	provisional	p.N354S	1.000	497	0%	249	30.9%	9	11.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
STK4	6789	genome.wustl.edu	37	20	43607201	43607201	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006282.2	+1	reviewed	p.Q78	1.000	385	0%	249	12%	4	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SEMG2	6407	genome.wustl.edu	37	20	43850369	43850369	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.L32	0.001	478	0%	318	25.2%	0	-	-	-	-	HMMPfam_Semenogelin
SEMG2	6407	genome.wustl.edu	37	20	43851617	43851617	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.N448	0.000	439	0%	243	24.7%	0	-	-	-	-	HMMPfam_Semenogelin
SEMG2	6407	genome.wustl.edu	37	20	43851910	43851910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.Y546C	0.000	296	0%	172	26.7%	0	-	possibly_damaging(0.887)	tolerated(0.09)	deleterious(0.643)	HMMPfam_Semenogelin
TP53TG5	27296	genome.wustl.edu	37	20	44003798	44003798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014477.2	-1	validated	p.R217*	0.513	124	0%	55	14.5%	6	16.6%	-	-	-	NULL
WFDC8	90199	genome.wustl.edu	37	20	44207874	44207874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130896.2	-1	reviewed	p.R5*	0.000	419	0.2%	308	27.9%	0	-	-	-	-	NULL
DNTTIP1	116092	genome.wustl.edu	37	20	44422571	44422571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052951.2	+1	validated	p.P63H	1.000	208	0%	121	30.6%	26	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TNNC2	7125	genome.wustl.edu	37	20	44453018	44453018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003279.2	-1	reviewed	p.F76S	1.000	142	0%	59	15.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
ACOT8	10005	genome.wustl.edu	37	20	44483900	44483900	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457981	-1	known	p.A14V	1.000	78	0%	29	24.1%	18	33.3%	-	-	-	superfamily_Thioesterase/thiol ester dehydrase-isomerase
ZSWIM3	140831	genome.wustl.edu	37	20	44507119	44507119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080752.2	+1	validated	p.R641H	1.000	189	0%	99	29.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZSWIM1	90204	genome.wustl.edu	37	20	44512244	44512244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080603.4	+1	validated	p.A338V	0.910	222	0%	118	31.4%	15	46.6%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
PCIF1	63935	genome.wustl.edu	37	20	44574380	44574380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022104.3	+1	validated	p.R400H	1.000	57	0%	25	48%	44	56.8%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
ZNF335	63925	genome.wustl.edu	37	20	44582538	44582538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022095.3	-1	reviewed	p.G831D	0.262	16	0.000	7	0.571	6	16.6%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
ZNF335	63925	genome.wustl.edu	37	20	44589333	44589333	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022095.3	-1	reviewed	p.G568	0.999	107	0.9%	54	24.1%	20	45%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MMP9	4318	genome.wustl.edu	37	20	44639644	44639644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.A202T	1.000	234	0%	122	36.9%	19	0%	possibly_damaging(0.893)	tolerated(0.08)	deleterious(0.652)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP9	4318	genome.wustl.edu	37	20	44639849	44639849	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.R239	1.000	252	0%	104	42.3%	10	0%	-	-	-	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP9	4318	genome.wustl.edu	37	20	44640921	44640921	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.S381	0.000	83	0%	47	27.7%	12	0%	-	-	-	"HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Kringle-like,superfamily_Metalloproteases (""zincins"") catalytic domain"
SLC12A5	57468	genome.wustl.edu	37	20	44663596	44663596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.N44T	1.000	156	0%	109	31.2%	0	-	benign(0.001)	tolerated(0.23)	neutral(0.042)	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44685152	44685152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.G1043D	0.999	170	0%	78	33.3%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
NCOA5	57727	genome.wustl.edu	37	20	44699021	44699021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020967.2	-1	reviewed	p.H65Y	0.999	457	0%	250	30.8%	25	36%	unknown(0)	tolerated(0.14)	-	NULL
CDH22	64405	genome.wustl.edu	37	20	44869839	44869839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021248.1	-1	reviewed	p.G105S	1.000	56	0%	25	28%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ELMO2	63916	genome.wustl.edu	37	20	45004381	45004381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133171.3	-1	reviewed	p.L286I	1.000	393	0%	179	22.9%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ELMO2	63916	genome.wustl.edu	37	20	45017802	45017802	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133171.3	-1	reviewed	p.L101	1.000	338	0.3%	224	20.5%	15	33.3%	-	-	-	superfamily_ARM repeat
ZNF840	100130863	genome.wustl.edu	37	20	45093592	45093592	+	Silent	SNP	G	G	A	rs144928738	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722110.1	+1	model	p.S162	0.156	107	0%	60	28.3%	0	-	-	-	-	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45839532	45839532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446994	-1	known	p.G692E	1.000	141	0%	75	10.7%	65	10.7%	-	-	-	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45874830	45874830	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183047.1	-1	reviewed	p.D736Y	1.000	291	0%	158	28.5%	33	36.3%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45875122	45875122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467200	-1	known	p.G546*	0.171	422	0%	205	27.3%	39	43.5%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45920611	45920611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183047.1	-1	reviewed	p.V197I	1.000	100	0%	61	31.1%	24	37.5%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain
SULF2	55959	genome.wustl.edu	37	20	46365676	46365676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018837.3	-1	validated	p.Q62H	1.000	156	0%	69	11.6%	16	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
PREX1	57580	genome.wustl.edu	37	20	47248880	47248880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.E1487D	0.999	123	0%	51	27.5%	11	0%	unknown(0)	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47265846	47265846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.Q1099H	1.000	63	0%	33	42.4%	7	42.8%	benign(0.293)	tolerated(0.06)	neutral(0.413)	NULL
PREX1	57580	genome.wustl.edu	37	20	47309257	47309257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.R330Q	0.999	199	0%	130	34.6%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ARFGEF2	10564	genome.wustl.edu	37	20	47569406	47569406	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.R196	1.000	238	0%	127	30.7%	3	33.3%	-	-	-	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47570297	47570297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.A270T	0.000	207	0%	72	9.7%	3	0%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47589814	47589814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.P553H	1.000	159	0%	73	31.5%	9	66.6%	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47591343	47591343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.S569F	1.000	77	0%	44	18.2%	8	37.5%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47611135	47611135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.G1041S	0.998	121	0%	73	24.7%	14	57.1%	benign(0.004)	tolerated(0.3)	neutral(0.029)	superfamily_ARM-type_fold
ARFGEF2	10564	genome.wustl.edu	37	20	47628512	47628512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.A1270D	1.000	440	0%	287	33.1%	28	57.1%	possibly_damaging(0.95)	deleterious(0.02)	deleterious(0.776)	superfamily_ARM-type_fold
CSE1L	1434	genome.wustl.edu	37	20	47707475	47707475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001316.2	+1	reviewed	p.E761K	1.000	212	0%	131	33.6%	176	42%	benign(0.212)	tolerated(0.25)	neutral(0.057)	HMMPfam_CAS_CSE1,superfamily_ARM repeat
ZNFX1	57169	genome.wustl.edu	37	20	47882692	47882692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.A661D	1.000	274	0%	165	12.7%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PTGIS	5740	genome.wustl.edu	37	20	48156217	48156217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000961.3	-1	reviewed	p.R188H	0.072	27	0%	14	28.6%	0	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	superfamily_Cytochrome_P450
PTGIS	5740	genome.wustl.edu	37	20	48164425	48164425	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000961.3	-1	reviewed	p.V110	1.000	308	0%	166	24.7%	2	0%	-	-	-	superfamily_Cytochrome_P450
SNAI1	6615	genome.wustl.edu	37	20	48604434	48604434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005985.2	+1	reviewed	p.H212Q	1.000	96	0%	48	27.1%	7	14.2%	benign(0.109)	deleterious(0)	neutral(0.453)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PTPN1	5770	genome.wustl.edu	37	20	49197851	49197851	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002827.2	+1	reviewed	p.R380*	0.000	52	0%	32	25%	21	23.8%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49508678	49508678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.A858V	0.994	425	0%	204	27.9%	67	43.2%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
ADNP	23394	genome.wustl.edu	37	20	49509657	49509657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.R532W	1.000	308	0%	201	31.3%	66	57.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
MOCS3	27304	genome.wustl.edu	37	20	49575894	49575894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014484.3	+1	reviewed	p.R172Q	1.000	98	0%	46	30.4%	30	40%	benign(0.002)	tolerated(0.74)	neutral(0.002)	HMMPfam_ThiF,superfamily_MoeB
ATP9A	10079	genome.wustl.edu	37	20	50290774	50290774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006045.1	-1	validated	p.V319F	1.000	187	0.5%	138	30.4%	10	40%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	NULL
ATP9A	10079	genome.wustl.edu	37	20	50290824	50290824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006045.1	-1	validated	p.C302Y	1.000	200	0%	145	24.8%	10	50%	benign(0)	tolerated(1)	-	NULL
ZFP64	55734	genome.wustl.edu	37	20	50701703	50701703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199427.2	-1	validated	p.C444Y	1.000	68	0%	33	24.2%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP64	55734	genome.wustl.edu	37	20	50769437	50769437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018197.2	-1	validated	p.A432T	0.999	131	0%	43	23.3%	26	42.3%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF217	7764	genome.wustl.edu	37	20	52192455	52192455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006526.2	-1	validated	p.G950C	0.001	115	0%	50	26%	31	41.9%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	NULL
CBLN4	140689	genome.wustl.edu	37	20	54573767	54573767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080617.4	-1	reviewed	p.A151V	1.000	378	0%	192	26.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
MC3R	4159	genome.wustl.edu	37	20	54824264	54824264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019888.3	+1	reviewed	p.S122F	1.000	335	0%	175	20%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM210B	116151	genome.wustl.edu	37	20	54941235	54941235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080821.2	+1	validated	p.H157Q	1.000	110	0%	73	13.7%	30	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1279
CSTF1	1477	genome.wustl.edu	37	20	54972782	54972782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033521.1	+1	reviewed	p.T177M	1.000	204	0%	114	13.2%	30	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CASS4	57091	genome.wustl.edu	37	20	55027243	55027243	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020356.3	+1	validated	p.I337	0.001	181	0%	94	34%	0	-	-	-	-	NULL
TFAP2C	7022	genome.wustl.edu	37	20	55208570	55208570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003222.3	+1	reviewed	p.R250*	1.000	77	0%	48	12.5%	1	0%	-	-	-	HMMPfam_TF_AP-2
TFAP2C	7022	genome.wustl.edu	37	20	55211672	55211672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003222.3	+1	reviewed	p.A310D	1.000	223	0%	122	12.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TF_AP-2
BMP7	655	genome.wustl.edu	37	20	55748272	55748272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001719.2	-1	reviewed	p.A377V	1.000	94	0%	36	25%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines
SPO11	23626	genome.wustl.edu	37	20	55917807	55917807	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012444.2	+1	reviewed	p.L328V	1.000	76	0%	33	18.2%	0	-	benign(0.151)	tolerated(0.09)	neutral(0.310)	superfamily_DNA topoisomerase IV alpha subunit
HMGB1P1	10357	genome.wustl.edu	37	20	56063784	56063784	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452924	-1	known	p.S100	0.996	469	0%	285	29.1%	46	2.1%	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CTCFL	140690	genome.wustl.edu	37	20	56098940	56098940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080618.2	-1	reviewed	p.V108M	0.000	24	0%	16	25%	0	-	benign(0.013)	tolerated(0.34)	neutral(0.024)	NULL
PCK1	5105	genome.wustl.edu	37	20	56139608	56139608	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002591.3	+1	reviewed	p.A419	0.995	150	0%	90	23.3%	0	-	-	-	-	HMMPfam_PEPCK,superfamily_SSF53795
VAPB	9217	genome.wustl.edu	37	20	57019259	57019259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004738.3	+1	reviewed	p.V234I	0.280	540	0%	286	25.9%	51	33.3%	unknown(0)	tolerated(1)	-	NULL
STX16	8675	genome.wustl.edu	37	20	57246221	57246221	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001433.1	+1	reviewed	p.E220	0.062	180	0%	70	30%	25	36%	unknown(0)	tolerated(1)	-	superfamily_t-snare proteins
TH1L	51497	genome.wustl.edu	37	20	57564011	57564011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198976.1	+1	reviewed	p.R156W	1.000	198	0%	94	31.9%	38	36.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TH1
ZNF831	128611	genome.wustl.edu	37	20	57766769	57766769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178457.1	+1	provisional	p.S232N	0.001	41	0%	22	22.7%	0	-	possibly_damaging(0.68)	deleterious(0.02)	deleterious(0.625)	NULL
ZNF831	128611	genome.wustl.edu	37	20	57829314	57829314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178457.1	+1	provisional	p.S1517N	0.001	198	0%	101	30.7%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	NULL
EDN3	1908	genome.wustl.edu	37	20	57876648	57876648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000114.2	+1	reviewed	p.P79H	0.000	55	1.8%	21	23.8%	0	-	possibly_damaging(0.899)	tolerated(0.09)	deleterious(0.652)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58456067	58456067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.R909M	0.705	39	0%	32	28.1%	0	-	possibly_damaging(0.924)	deleterious(0.01)	deleterious(0.778)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58489269	58489269	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.C224*	1.000	99	0%	80	32.5%	0	-	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58564159	58564159	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.G408	0.000	400	0%	190	27.4%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
CDH26	60437	genome.wustl.edu	37	20	58569506	58569506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.G543E	0.016	91	0%	57	22.8%	0	-	benign(0.351)	deleterious(0.02)	deleterious(0.494)	HMMPfam_Cadherin,superfamily_Cadherin
CDH26	60437	genome.wustl.edu	37	20	58576463	58576463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.S721R	0.000	59	0%	32	40.6%	0	-	possibly_damaging(0.951)	deleterious(0.05)	deleterious(0.740)	NULL
C20orf197	284756	genome.wustl.edu	37	20	58645760	58645760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173644.1	+1	predicted	p.P60S	0.001	262	0%	125	22.4%	0	-	possibly_damaging(0.863)	-	-	NULL
CDH4	1002	genome.wustl.edu	37	20	60485620	60485620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.R444H	1.000	39	0%	12	50%	0	-	benign(0.169)	tolerated(0.55)	neutral(0.022)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
LOC100287640	100287640	genome.wustl.edu	37	20	60504686	60504686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343715.1	-1	model	p.A106T	0.904	65	0%	25	24%	0	-	-	-	-	NULL
LSM14B	149986	genome.wustl.edu	37	20	60706442	60706442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144703.2	+1	validated	p.D289G	0.997	22	0%	14	50%	55	45.4%	possibly_damaging(0.818)	tolerated(0.1)	deleterious(0.595)	NULL
PSMA7	5688	genome.wustl.edu	37	20	60712432	60712432	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442551	-1	known	p.I153T	0.996	221	0%	110	31.8%	381	46.1%	-	-	-	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SS18L1	26039	genome.wustl.edu	37	20	60749619	60749619	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198935.1	+1	validated	p.G361	0.999	73	0%	29	37.9%	14	78.5%	-	-	-	NULL
GTPBP5	26164	genome.wustl.edu	37	20	60770957	60770957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015666.3	+1	validated	p.G102C	1.000	45	0%	13	30.8%	29	41.3%	unknown(0)	deleterious(0)	-	HMMPfam_GTP1_OBG,superfamily_GTP1_OBG_sub
CABLES2	81928	genome.wustl.edu	37	20	60968534	60968534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031215.2	-1	validated	p.P281H	0.350	26	0%	18	38.9%	4	50%	benign(0.006)	tolerated(0.51)	neutral(0.009)	NULL
C20orf166-AS1	253868	genome.wustl.edu	37	20	61143820	61143820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412495	-1	known	p.A10T	0.000	70	0%	37	40.5%	0	-	-	-	-	NULL
SLCO4A1	28231	genome.wustl.edu	37	20	61299853	61299853	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.S612	0.997	28	0%	18	27.8%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
DIDO1	11083	genome.wustl.edu	37	20	61526413	61526413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.R773S	0.000	268	0%	152	27.6%	12	25%	possibly_damaging(0.738)	tolerated(0.1)	deleterious(0.556)	HMMPfam_TFIIS_M,HMMSmart_SM00510
DIDO1	11083	genome.wustl.edu	37	20	61541129	61541129	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.S361	0.009	275	0%	130	17.7%	20	5%	-	-	-	NULL
C20orf11	54994	genome.wustl.edu	37	20	61575032	61575032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017896.2	+1	validated	p.M167I	1.000	18	0%	13	38.5%	74	44.5%	benign(0.157)	deleterious(0.01)	neutral(0.420)	HMMSmart_CRA,HMMPfam_RanBPM_CRA
SLC17A9	63910	genome.wustl.edu	37	20	61594020	61594020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022082.3	+1	validated	p.Y181C	1.000	46	0%	27	22.2%	2	0%	benign(0.223)	tolerated(0.12)	neutral(0.283)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC17A9	63910	genome.wustl.edu	37	20	61597012	61597012	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022082.3	+1	validated	p.T332	0.125	119	0.8%	49	20.4%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
YTHDF1	54915	genome.wustl.edu	37	20	61834757	61834757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.G179R	0.987	44	0%	19	21.1%	40	22.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61835024	61835024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.G90R	1.000	95	0%	52	30.8%	58	56.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CHRNA4	1137	genome.wustl.edu	37	20	61982034	61982034	+	Silent	SNP	C	C	T	rs121912253		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000744.5	-1	reviewed	p.P243	0.016	34	2.9%	16	25%	0	-	-	-	-	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
RTEL1	51750	genome.wustl.edu	37	20	62305418	62305418	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032957.3	+1	reviewed	p.P297	0.744	122	0.8%	71	12.7%	4	25%	-	-	-	NULL
TPD52L2	7165	genome.wustl.edu	37	20	62520562	62520562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199360.1	+1	validated	p.S189P	1.000	36	0%	19	26.3%	126	47.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TPD52
SAMD10	140700	genome.wustl.edu	37	20	62607060	62607060	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080621.4	-1	validated	p.Q191*	1.000	41	0%	15	40%	9	33.3%	-	-	-	NULL
PRPF6	24148	genome.wustl.edu	37	20	62632485	62632485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012469.3	+1	reviewed	p.A360V	1.000	120	0%	45	42.2%	75	21.3%	benign(0.004)	tolerated(0.34)	neutral(0.023)	superfamily_SSF48452
PRPF6	24148	genome.wustl.edu	37	20	62632577	62632577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012469.3	+1	reviewed	p.R391W	1.000	104	0%	57	26.3%	60	51.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_HAT,superfamily_SSF48452
PCMTD2	55251	genome.wustl.edu	37	20	62896671	62896671	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018257.2	+1	validated	p.C157	0.749	247	0.4%	145	35.2%	34	29.4%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TPTE	7179	genome.wustl.edu	37	21	10908846	10908846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.T500I	0.893	125	0%	85	11.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TPTE	7179	genome.wustl.edu	37	21	10944786	10944786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.R150G	0.050	520	0%	323	12.7%	0	-	possibly_damaging(0.855)	tolerated(0.34)	neutral(0.353)	superfamily_Voltage-gated potassium channels
RBM11	54033	genome.wustl.edu	37	21	15599204	15599204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144770.3	+1	validated	p.W146R	0.883	365	0%	237	18.1%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RBM11	54033	genome.wustl.edu	37	21	15599549	15599549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144770.3	+1	validated	p.D261Y	1.000	369	0.3%	246	30.9%	0	-	benign(0.202)	deleterious(0.01)	neutral(0.425)	NULL
NRIP1	8204	genome.wustl.edu	37	21	16337466	16337466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003489.3	-1	reviewed	p.E1016D	0.775	240	0%	120	18.3%	17	17.6%	benign(0.016)	tolerated(0.62)	neutral(0.005)	NULL
TMPRSS15	5651	genome.wustl.edu	37	21	19715834	19715834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.V473I	0.981	277	0%	167	15.6%	0	-	benign(0.111)	deleterious(0.04)	neutral(0.357)	HMMPfam_MAM,HMMSmart_SM00137
TMPRSS15	5651	genome.wustl.edu	37	21	19725223	19725223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002772.2	-1	reviewed	p.S390P	0.990	354	0%	225	20.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MAM,HMMSmart_SM00137
NCAM2	4685	genome.wustl.edu	37	21	22696733	22696733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.S217Y	1.000	288	0%	210	27.1%	1	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_I-set,superfamily_SSF48726
NCAM2	4685	genome.wustl.edu	37	21	22838986	22838986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.V572I	1.000	135	0%	73	34.2%	1	0%	probably_damaging(0.981)	tolerated(0.97)	neutral(0.425)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
NCAM2	4685	genome.wustl.edu	37	21	22910175	22910175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004540.2	+1	reviewed	p.P804H	1.000	90	0%	53	30.2%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
MRPL39	54148	genome.wustl.edu	37	21	26960065	26960065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080794.3	-1	reviewed	p.S336P	0.047	295	0%	157	31.8%	1	0%	unknown(0)	-	-	NULL
APP	351	genome.wustl.edu	37	21	27264105	27264105	+	Missense_Mutation	SNP	T	T	C	rs63750643		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.T714A	1.000	224	0%	127	29.1%	438	77.1%	benign(0.03)	deleterious(0.01)	neutral(0.407)	HMMPfam_APP_amyloid
APP	351	genome.wustl.edu	37	21	27425570	27425570	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000484.3	-1	reviewed	p.W150*	1.000	563	0.4%	317	31.2%	466	1%	-	-	-	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2)
ADAMTS5	11096	genome.wustl.edu	37	21	28327121	28327121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007038.3	-1	reviewed	p.R392C	1.000	295	0%	162	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTS5	11096	genome.wustl.edu	37	21	28338345	28338345	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007038.3	-1	reviewed	p.A122	0.000	43	0%	15	26.7%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
LTN1	26046	genome.wustl.edu	37	21	30316872	30316872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.L1272P	1.000	229	0%	150	26%	9	66.6%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	NULL
LTN1	26046	genome.wustl.edu	37	21	30359221	30359221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015565.2	-1	validated	p.A26V	1.000	203	0%	122	23.8%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
RWDD2B	10069	genome.wustl.edu	37	21	30378971	30378971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016940.2	-1	validated	p.L243F	1.000	131	0%	62	17.7%	20	30%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_DUF1115
CCT8	10694	genome.wustl.edu	37	21	30435686	30435686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006585.2	-1	validated	p.I310V	0.998	165	0%	87	27.6%	254	42.9%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CCT8	10694	genome.wustl.edu	37	21	30439891	30439891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006585.2	-1	validated	p.L123M	0.998	208	0%	137	25.5%	148	51.3%	benign(0.341)	deleterious(0.03)	deleterious(0.472)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
CLDN17	26285	genome.wustl.edu	37	21	31538329	31538329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012131.2	-1	reviewed	p.R203C	0.000	279	0%	169	27.8%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
CLDN8	9073	genome.wustl.edu	37	21	31587579	31587579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199328.2	-1	reviewed	p.S222N	0.662	259	0%	141	38.3%	0	-	probably_damaging(0.976)	tolerated(0.13)	deleterious(0.670)	NULL
CLDN8	9073	genome.wustl.edu	37	21	31587903	31587903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199328.2	-1	reviewed	p.V114A	0.702	182	0%	89	32.6%	1	0%	benign(0.001)	tolerated(1)	-	HMMPfam_PMP22_Claudin
KRTAP24-1	643803	genome.wustl.edu	37	21	31654815	31654815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085455.1	-1	validated	p.R146C	0.000	351	0%	204	25.5%	0	-	possibly_damaging(0.936)	-	-	HMMPfam_PMG
KRTAP13-1	140258	genome.wustl.edu	37	21	31768639	31768639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181599.2	+1	validated	p.S79T	0.151	256	0%	123	30.9%	0	-	probably_damaging(0.957)	tolerated(0.92)	neutral(0.401)	HMMPfam_PMG
KRTAP19-5	337972	genome.wustl.edu	37	21	31874295	31874295	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181611.1	-1	provisional	p.G38	0.025	392	0%	246	29.7%	0	-	-	-	-	NULL
KRTAP19-8	728299	genome.wustl.edu	37	21	32410716	32410716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099219.1	-1	provisional	p.G16V	0.016	855	0%	608	32.9%	0	-	unknown(0)	-	-	NULL
TIAM1	7074	genome.wustl.edu	37	21	32492940	32492940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003253.2	-1	validated	p.D1508N	1.000	181	0%	96	26%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SOD1	6647	genome.wustl.edu	37	21	33040872	33040872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000454.4	+1	reviewed	p.V149A	0.977	408	0%	205	32.7%	590	48.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sod_Cu,superfamily_CuZn superoxide dismutase-like,PatternScan_SOD_CU_ZN_2
SCAF4	57466	genome.wustl.edu	37	21	33064182	33064182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.A559V	1.000	290	0%	190	26.8%	34	35.2%	unknown(0)	tolerated(0.1)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SCAF4	57466	genome.wustl.edu	37	21	33068988	33068988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.V285I	0.000	90	0%	57	35.1%	34	47%	unknown(0)	tolerated(0.08)	-	NULL
SCAF4	57466	genome.wustl.edu	37	21	33074208	33074208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.V161F	0.986	178	0%	107	23.4%	23	43.4%	unknown(0)	deleterious(0.04)	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33371179	33371179	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014586.1	+1	validated	p.S609	0.087	133	0%	62	30.6%	3	66.6%	-	-	-	NULL
C21orf63	59271	genome.wustl.edu	37	21	33887271	33887271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058187.3	+1	validated	p.D366G	0.967	223	0%	123	14.6%	2	0%	benign(0.001)	deleterious(0.04)	neutral(0.349)	NULL
C21orf59	56683	genome.wustl.edu	37	21	33980027	33980027	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021254.1	-1	predicted	e3-1	1.000	273	0%	140	17.1%	0	-	-	-	-	-
SYNJ1	8867	genome.wustl.edu	37	21	34025630	34025630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.A948T	1.000	133	0%	57	22.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_DUF1866,superfamily_RNA-binding domain RBD
GCFC1	94104	genome.wustl.edu	37	21	34116050	34116050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016631.3	-1	reviewed	p.L736F	0.995	123	0%	62	32.3%	23	43.4%	possibly_damaging(0.83)	deleterious(0.01)	deleterious(0.721)	HMMPfam_GCFC
IFNAR2	3455	genome.wustl.edu	37	21	34632960	34632960	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207585.1	+1	reviewed	p.V256	0.001	334	0.3%	188	13.8%	5	0%	-	-	-	NULL
IFNAR2	3455	genome.wustl.edu	37	21	34635581	34635581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207585.1	+1	reviewed	p.D442N	0.001	725	0%	370	27.3%	8	12.5%	probably_damaging(0.974)	tolerated(0.27)	neutral(0.450)	NULL
IL10RB	3588	genome.wustl.edu	37	21	34660477	34660477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000628.3	+1	reviewed	p.L239I	0.000	373	0%	202	30.7%	44	29.5%	probably_damaging(0.981)	tolerated(0.11)	deleterious(0.697)	NULL
IFNGR2	3460	genome.wustl.edu	37	21	34804516	34804516	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005534.3	+1	reviewed	p.S198	0.000	183	0%	102	27.5%	90	44.4%	-	-	-	HMMPfam_fn3,superfamily_Fibronectin type III
CRYZL1	9946	genome.wustl.edu	37	21	34988888	34988888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413017	-1	known	p.A95D	0.000	32	0%	22	18.2%	0	-	unknown(0)	tolerated(0.57)	-	superfamily_GroES_like
MIR802	768219	genome.wustl.edu	37	21	37093088	37093088	+	RNA	SNP	G	G	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390235	+1	known	NULL	0.816	228	0%	128	30.5%	0	-	-	-	-	-
DOPEY2	9980	genome.wustl.edu	37	21	37602804	37602804	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.P574	0.000	208	0%	115	27.8%	4	50%	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37609603	37609603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.R889Q	0.985	136	0%	69	24.6%	18	66.6%	benign(0.128)	tolerated(0.34)	neutral(0.034)	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37626109	37626109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.D1721N	1.000	195	0%	119	11.8%	20	20%	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	NULL
CHAF1B	8208	genome.wustl.edu	37	21	37759895	37759895	+	Splice_Site	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005441.2	+1	reviewed	e2-1	1.000	352	0%	148	25%	0	-	-	-	-	-
HLCS	3141	genome.wustl.edu	37	21	38269246	38269246	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000411.5	-1	reviewed	p.I455	0.396	173	0%	90	26.7%	11	54.5%	-	-	-	superfamily_SSF55681
BRWD1	54014	genome.wustl.edu	37	21	40568264	40568264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033656.2	-1	reviewed	p.R2244I	1.000	665	0%	419	26.7%	7	71.4%	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
BRWD1	54014	genome.wustl.edu	37	21	40568672	40568672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.P2108H	0.972	643	0%	424	10.6%	13	0%	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40610455	40610455	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455867	-1	known	p.G510*	0.996	176	0%	150	28%	1	0%	benign(0.001)	tolerated(0.28)	neutral(0.032)	NULL
WRB	7485	genome.wustl.edu	37	21	40762769	40762769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004627.4	+1	reviewed	p.T83M	0.999	73	0%	40	25%	41	36.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_CHD5
LCA5L	150082	genome.wustl.edu	37	21	40778045	40778045	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152505.3	-1	validated	p.R592	0.000	200	0%	92	17.4%	2	50%	-	-	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41514530	41514530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.L1121I	1.000	758	0%	362	28.5%	0	-	benign(0.152)	tolerated(0.72)	neutral(0.015)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MX2	4600	genome.wustl.edu	37	21	42778749	42778749	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002463.1	+1	reviewed	p.M577L	0.005	214	0%	103	34%	3	0%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Dynamin_M
MX1	4599	genome.wustl.edu	37	21	42823164	42823164	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144925.1	+1	reviewed	p.T501	0.001	542	0%	312	31.1%	7	0%	-	-	-	HMMPfam_Dynamin_M
PRDM15	63977	genome.wustl.edu	37	21	43240515	43240515	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.C1058	0.998	32	0%	11	45.5%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRDM15	63977	genome.wustl.edu	37	21	43246376	43246376	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.A889	0.995	157	0%	74	18.9%	2	50%	-	-	-	NULL
PRDM15	63977	genome.wustl.edu	37	21	43291623	43291623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.R174H	0.000	44	0%	20	55%	0	-	unknown(0)	-	-	NULL
ZNF295	49854	genome.wustl.edu	37	21	43411418	43411418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098402.1	-1	validated	p.E929D	1.000	139	0.7%	87	24.1%	5	20%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ABCG1	9619	genome.wustl.edu	37	21	43708047	43708047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004915.3	+1	reviewed	p.V341A	1.000	314	0.3%	142	31%	24	45.8%	possibly_damaging(0.888)	deleterious(0.03)	deleterious(0.712)	NULL
TFF1	7031	genome.wustl.edu	37	21	43783437	43783437	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003225.2	-1	reviewed	p.G55	0.834	68	0%	32	21.9%	3	0%	-	-	-	HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil,PatternScan_P_TREFOIL
WDR4	10785	genome.wustl.edu	37	21	44270184	44270184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018669.4	-1	reviewed	p.P405Q	0.001	236	0%	111	25.2%	22	36.3%	benign(0.396)	deleterious(0.02)	deleterious(0.510)	NULL
HSF2BP	11077	genome.wustl.edu	37	21	45012134	45012134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007031.1	-1	reviewed	p.F256L	1.000	309	0%	152	23%	0	-	benign(0.003)	tolerated(1)	-	superfamily_ARM repeat
AGPAT3	56894	genome.wustl.edu	37	21	45391351	45391351	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037553.1	+1	reviewed	p.Y249	0.988	177	0%	90	35.6%	27	29.6%	-	-	-	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45511918	45511918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.T995	0.000	159	0.6%	100	15%	17	11.7%	-	-	-	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45518284	45518284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.E1072G	0.985	201	0%	78	26.9%	22	27.2%	benign(0.01)	tolerated(0.11)	neutral(0.272)	NULL
PWP2	5822	genome.wustl.edu	37	21	45546835	45546835	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005049.2	+1	validated	p.F710Y	1.000	129	0%	51	25.5%	36	36.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_WD40,superfamily_WD40_like
KRTAP10-9	386676	genome.wustl.edu	37	21	46047583	46047583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198690.2	+1	validated	p.Q165H	0.874	444	0.2%	222	26.1%	0	-	unknown(0)	tolerated(0.15)	-	NULL
LOC100130599	100130599	genome.wustl.edu	37	21	46122509	46122509	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343756.1	+1	model	p.C255	1.000	248	0%	133	33.1%	0	-	-	-	-	HMMPfam_Keratin_B2
PTTG1IP	754	genome.wustl.edu	37	21	46271541	46271541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445724	-1	known	p.A57V	0.841	181	0.6%	111	25.2%	181	40.3%	unknown(0)	-	-	NULL
ADARB1	104	genome.wustl.edu	37	21	46596527	46596527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015833.3	+1	validated	p.T304M	1.000	119	0%	76	23.7%	3	0%	possibly_damaging(0.526)	tolerated(0.18)	neutral(0.233)	superfamily_dsRNA-binding domain-like
LSS	4047	genome.wustl.edu	37	21	47641872	47641872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001438.2	-1	reviewed	p.S149Y	1.000	186	0%	65	30.8%	29	34.4%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Prenyltrans,superfamily_Terp_cyc_toroid
MCM3AP	8888	genome.wustl.edu	37	21	47676828	47676828	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.C1269	1.000	20	0%	13	38.5%	32	31.2%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47801609	47801609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.G1056C	0.259	350	0%	175	17.1%	5	80%	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	NULL
PCNT	5116	genome.wustl.edu	37	21	47831244	47831244	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.L1753	1.000	156	0%	77	26%	8	62.5%	-	-	-	NULL
PCNT	5116	genome.wustl.edu	37	21	47860817	47860817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.A3148V	1.000	152	0%	74	24.3%	26	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PACT_coil_coil
DIP2A	23181	genome.wustl.edu	37	21	47931344	47931344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.P307S	1.000	36	0%	33	39.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRMT2	3275	genome.wustl.edu	37	21	48071897	48071897	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334494	+1	known	p.S278	0.000	139	0%	77	23.4%	1	100%	-	-	-	NULL
PRMT2	3275	genome.wustl.edu	37	21	48083406	48083406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000458387	+1	known	p.A256T	0.998	89	0%	41	17.1%	78	47.4%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
LOC729057	729057	genome.wustl.edu	37	22	16123169	16123169	+	RNA	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_042044.2	+1	model	NULL	0.993	101	0%	60	10%	1	0%	-	-	-	-
POTEH	23784	genome.wustl.edu	37	22	16287589	16287589	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136213.1	-1	provisional	p.G99	0.007	322	0%	137	10.9%	0	-	-	-	-	NULL
OR11H1	81061	genome.wustl.edu	37	22	16448964	16448964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005239.1	-1	provisional	p.H281Y	0.007	1130	0%	831	21.7%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
CCT8L2	150160	genome.wustl.edu	37	22	17072779	17072779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.G221V	0.138	109	0%	35	14.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
CECR2	27443	genome.wustl.edu	37	22	17983923	17983923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400573	+1	known	p.T227A	1.000	162	0%	87	36.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC25A18	83733	genome.wustl.edu	37	22	18069980	18069980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031481.1	+1	provisional	p.R163H	0.979	264	0%	113	29.2%	1	100%	benign(0.182)	deleterious(0.01)	neutral(0.422)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
TSSK2	23617	genome.wustl.edu	37	22	19119415	19119415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053006.4	+1	validated	p.R168H	0.000	193	0%	90	17.8%	1	0%	benign(0.015)	tolerated(0.14)	neutral(0.250)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DGCR14	8220	genome.wustl.edu	37	22	19127479	19127479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022719.2	-1	reviewed	p.S153R	1.000	129	0%	66	13.6%	19	15.7%	possibly_damaging(0.857)	tolerated(0.15)	deleterious(0.572)	HMMPfam_Es2
CLTCL1	8218	genome.wustl.edu	37	22	19230318	19230318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.R221C	0.998	355	0.3%	221	12.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain
HIRA	7290	genome.wustl.edu	37	22	19349269	19349269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003325.3	-1	reviewed	p.P654H	0.996	354	0.3%	167	20.4%	17	29.4%	possibly_damaging(0.46)	deleterious(0.03)	deleterious(0.515)	NULL
MRPL40	64976	genome.wustl.edu	37	22	19422393	19422393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003776.2	+1	reviewed	p.P91H	0.999	264	0%	133	18.8%	67	47.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MRP-L28
DGCR8	54487	genome.wustl.edu	37	22	20073529	20073529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022720.5	+1	validated	p.A15T	0.998	95	0%	36	25%	7	100%	probably_damaging(0.959)	tolerated(0.17)	neutral(0.462)	NULL
USP41	373856	genome.wustl.edu	37	22	20723739	20723739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_036729.7	-1	model	p.S192P	0.271	127	0%	58	29.3%	3	0%	probably_damaging(0.984)	deleterious(0.02)	deleterious(0.814)	HMMPfam_UCH,superfamily_Cysteine proteinases
KLHL22	84861	genome.wustl.edu	37	22	20819420	20819420	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032775.2	-1	validated	p.N279	0.799	41	0%	25	32%	33	36.3%	-	-	-	superfamily_Galactose oxidase central domain
MED15	51586	genome.wustl.edu	37	22	20921038	20921038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003891.1	+1	reviewed	p.Q325H	1.000	162	0.6%	67	16.4%	55	21.8%	unknown(0)	-	-	NULL
SERPIND1	3053	genome.wustl.edu	37	22	21134327	21134327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000185.3	+1	reviewed	p.Y243D	0.942	772	0.1%	418	26.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CRKL	1399	genome.wustl.edu	37	22	21304087	21304087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005207.3	+1	reviewed	p.T289M	1.000	421	0.2%	216	29.6%	23	52.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
AIFM3	150209	genome.wustl.edu	37	22	21332006	21332006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144704.2	+1	validated	p.G434C	0.999	76	0%	37	24.3%	1	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
LZTR1	8216	genome.wustl.edu	37	22	21351071	21351071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.T769M	1.000	30	0%	19	21.1%	35	54.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_POZ domain
FLJ39582	353117	genome.wustl.edu	37	22	21363761	21363761	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027051.1	+1	validated	NULL	0.000	42	0%	24	54.2%	2	0%	-	-	-	-
GGT2	728441	genome.wustl.edu	37	22	21570344	21570344	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129377.2	-1	model	p.V206	0.999	29	0%	15	40%	2	0%	-	-	-	HMMPfam_G_glu_transpept
MAPK1	5594	genome.wustl.edu	37	22	22160270	22160270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002745.4	-1	reviewed	p.L121I	1.000	264	0%	175	11.4%	70	12.8%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TOP3B	8940	genome.wustl.edu	37	22	22314080	22314080	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457270	-1	known	p.A356V	0.979	55	0%	32	43.8%	14	28.5%	-	-	-	superfamily_Prokaryotic type I DNA topoisomerase,HMMPfam_Topoisom_bac
TOP3B	8940	genome.wustl.edu	37	22	22314100	22314100	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003935.3	-1	reviewed	p.L555	1.000	49	0%	34	32.4%	12	33.3%	-	-	-	superfamily_Prokaryotic type I DNA topoisomerase,HMMPfam_Topoisom_bac
TOP3B	8940	genome.wustl.edu	37	22	22324609	22324609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003935.3	-1	reviewed	p.D185G	1.000	31	0%	10	50%	25	28%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Topoisom_bac
IGLV5-52	28779	genome.wustl.edu	37	22	22673341	22673341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390289	+1	known	p.S45N	0.959	624	0%	283	24.4%	11	63.6%	benign(0.061)	tolerated(0.07)	neutral(0.323)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV5-37	28783	genome.wustl.edu	37	22	22781913	22781913	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390300	+1	known	p.L11	0.362	41	0%	28	21.4%	0	-	-	-	-	NULL
ZNF280A	129025	genome.wustl.edu	37	22	22869880	22869880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080740.3	-1	reviewed	p.E25D	0.000	727	0%	412	25.5%	0	-	benign(0.002)	tolerated(0.51)	neutral(0.009)	NULL
PRAME	23532	genome.wustl.edu	37	22	22890512	22890512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006115.3	-1	reviewed	p.C503R	0.893	281	0%	173	27.2%	148	48.6%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	NULL
IGLV2-33	28811	genome.wustl.edu	37	22	22930928	22930928	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390302	+1	known	p.C41	0.147	705	0.1%	369	30.9%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-27	28791	genome.wustl.edu	37	22	23011260	23011260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390304	+1	known	p.S108Y	0.000	85	0%	52	23.1%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMSmart_SM00406,HMMSmart_SM00409,superfamily_Immunoglobulin
IGLV3-16	28799	genome.wustl.edu	37	22	23090361	23090361	+	Silent	SNP	C	C	T	rs193183787	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390311	+1	known	p.D100	0.943	269	0%	118	33.9%	22	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV3-12	28802	genome.wustl.edu	37	22	23114877	23114877	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390313	+1	known	p.A50D	0.000	60	0%	40	25%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
IGLV4-3	28786	genome.wustl.edu	37	22	23213904	23213904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390318	+1	known	p.P21S	0.000	267	0%	122	36.9%	0	-	probably_damaging(0.996)	tolerated(0.97)	neutral(0.462)	HMMPfam_V-set,superfamily_Immunoglobulin
GNAZ	2781	genome.wustl.edu	37	22	23438543	23438543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002073.2	+1	reviewed	p.A221S	0.998	126	0.8%	53	11.3%	4	0%	benign(0.293)	deleterious(0.02)	deleterious(0.474)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
RTDR1	27156	genome.wustl.edu	37	22	23476313	23476313	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439064	-1	known	p.R32*	0.000	84	0%	47	38.3%	2	50%	-	-	-	NULL
BCR	613	genome.wustl.edu	37	22	23615878	23615878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004327.3	+1	reviewed	p.L678I	1.000	90	0%	29	44.8%	59	40.6%	benign(0.066)	tolerated(0.1)	neutral(0.291)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
LOC649264	649264	genome.wustl.edu	37	22	23701861	23701861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001131286.2	-1	model	p.S276I	0.027	194	0%	90	34.4%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
IGLL1	3543	genome.wustl.edu	37	22	23915516	23915516	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020070.2	-1	reviewed	p.S193R	0.798	309	0%	172	21.5%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
C22orf43	51233	genome.wustl.edu	37	22	23956333	23956333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016449.2	-1	provisional	p.D204N	0.001	145	0%	82	29.3%	0	-	possibly_damaging(0.605)	-	-	NULL
ZNF70	7621	genome.wustl.edu	37	22	24086398	24086398	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021916.2	-1	provisional	p.C310	0.537	363	0%	186	29%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SMARCB1	6598	genome.wustl.edu	37	22	24134006	24134006	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003073.3	+1	reviewed	p.R53*	1.000	196	0%	96	38.5%	79	10.1%	-	-	-	NULL
DERL3	91319	genome.wustl.edu	37	22	24179965	24179965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135751.1	-1	reviewed	p.R135H	1.000	19	0.000	8	0.500	31	9.6%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_DER1
CABIN1	23523	genome.wustl.edu	37	22	24456597	24456597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012295.2	+1	reviewed	p.H537R	1.000	54	0%	21	38.1%	25	44%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	NULL
CABIN1	23523	genome.wustl.edu	37	22	24491986	24491986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012295.2	+1	reviewed	p.E1293D	1.000	208	0%	96	32.3%	16	31.2%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
SUSD2	56241	genome.wustl.edu	37	22	24583360	24583360	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019601.3	+1	validated	p.S611	0.936	35	0%	28	14.3%	4	0%	-	-	-	HMMPfam_VWD,HMMSmart_VWD
GGT5	2687	genome.wustl.edu	37	22	24621000	24621000	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425408	-1	known	p.A129V	0.000	15	0%	15	26.7%	9	0%	-	-	-	HMMPfam_G_glu_transpept
FAM211B	388886	genome.wustl.edu	37	22	24982152	24982152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207644.2	-1	validated	p.G217D	1.000	60	0%	18	27.8%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_RNI-like
SGSM1	129049	genome.wustl.edu	37	22	25280080	25280080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.H574R	1.000	58	0%	34	29.4%	0	-	probably_damaging(0.974)	tolerated(0.26)	neutral(0.450)	NULL
LRP5L	91355	genome.wustl.edu	37	22	25756013	25756013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135772.1	-1	validated	p.R16H	1.000	58	0%	25	40%	13	30.7%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
ADRBK2	157	genome.wustl.edu	37	22	26083560	26083560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.R295W	1.000	201	0.5%	106	28.3%	11	45.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ADRBK2	157	genome.wustl.edu	37	22	26091155	26091155	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.G378	0.990	105	0%	59	10.2%	8	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ADRBK2	157	genome.wustl.edu	37	22	26114293	26114293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005160.3	+1	reviewed	p.R579H	0.992	216	0%	121	32.2%	16	18.7%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
MYO18B	84700	genome.wustl.edu	37	22	26157076	26157076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.R6L	1.000	157	0%	83	24.1%	0	-	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26299786	26299786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.K1712N	1.000	46	2.2%	24	25%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26423548	26423548	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.D2536	0.000	73	0%	48	29.2%	0	-	-	-	-	NULL
SEZ6L	23544	genome.wustl.edu	37	22	26688520	26688520	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021115.4	+1	validated	p.G81	0.000	147	0%	68	20.6%	0	-	-	-	-	NULL
ASPHD2	57168	genome.wustl.edu	37	22	26829703	26829703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020437.4	+1	validated	p.G41D	1.000	37	0%	16	31.2%	0	-	benign(0.328)	deleterious(0.03)	neutral(0.467)	NULL
HPS4	89781	genome.wustl.edu	37	22	26849285	26849285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022081.4	-1	reviewed	p.G681S	0.998	258	0.4%	107	38.3%	19	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CRYBB1	1414	genome.wustl.edu	37	22	27003928	27003928	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001887.3	-1	reviewed	p.G119	0.993	102	1%	63	27%	1	0%	-	-	-	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
PITPNB	23760	genome.wustl.edu	37	22	28256139	28256139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012399.3	-1	reviewed	p.V209I	1.000	192	0%	101	30.7%	38	52.6%	benign(0.057)	tolerated(0.4)	neutral(0.019)	HMMPfam_IP_trans,superfamily_Bet v1-like
ZNRF3	84133	genome.wustl.edu	37	22	29440867	29440867	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032173.2	+1	validated	p.R145*	1.000	85	0%	40	47.5%	5	80%	-	-	-	NULL
ZNRF3	84133	genome.wustl.edu	37	22	29445387	29445387	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032173.2	+1	validated	p.S306	1.000	68	0%	30	36.7%	19	36.8%	-	-	-	NULL
EMID1	129080	genome.wustl.edu	37	22	29621183	29621183	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133455.2	+1	validated	p.A127	0.000	103	0%	42	31%	7	28.5%	-	-	-	NULL
RHBDD3	25807	genome.wustl.edu	37	22	29659844	29659844	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012265.1	-1	provisional	p.G171fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Rhomboid
EWSR1	2130	genome.wustl.edu	37	22	29696115	29696115	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360091	+1	known	p.R297*	0.160	388	0.3%	197	23.9%	177	47.4%	-	-	-	NULL
RASL10A	10633	genome.wustl.edu	37	22	29709897	29709897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006477.3	-1	validated	p.S100I	1.000	16	0%	19	26.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Miro,superfamily_P-loop containing nucleoside triphosphate hydrolases
RFPL1	5988	genome.wustl.edu	37	22	29834871	29834871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021026.2	+1	validated	p.A31T	0.317	507	0%	311	28.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57850
THOC5	8563	genome.wustl.edu	37	22	29916090	29916090	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002877.1	-1	validated	p.I427	1.000	122	0%	56	35.7%	27	44.4%	-	-	-	HMMPfam_FimP
MTMR3	8897	genome.wustl.edu	37	22	30416739	30416739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021090.3	+1	reviewed	p.L1031M	1.000	83	0%	39	46.2%	13	46.1%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
MTMR3	8897	genome.wustl.edu	37	22	30418045	30418045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021090.3	+1	reviewed	p.L1085M	0.998	103	0%	65	13.8%	22	9%	possibly_damaging(0.945)	tolerated(0.28)	neutral(0.421)	NULL
SF3A1	10291	genome.wustl.edu	37	22	30742485	30742485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005877.4	-1	reviewed	p.R70M	1.000	235	0%	94	27.7%	60	43.3%	probably_damaging(0.995)	-	-	HMMPfam_Surp,HMMSmart_SWAP,superfamily_SSF109905
GAL3ST1	9514	genome.wustl.edu	37	22	30951026	30951026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004861.1	-1	reviewed	p.P396S	1.000	31	0%	14	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Gal-3-0_sulfotr
OSBP2	23762	genome.wustl.edu	37	22	31283460	31283460	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030758.3	+1	reviewed	p.W385*	1.000	39	0%	19	31.6%	10	40%	-	-	-	NULL
MORC2	22880	genome.wustl.edu	37	22	31324094	31324094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014941.1	-1	provisional	p.R919H	0.962	116	0%	61	31.1%	55	32.7%	benign(0.036)	deleterious(0.01)	neutral(0.408)	NULL
SMTN	6525	genome.wustl.edu	37	22	31484688	31484688	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134270.1	+1	reviewed	p.R100*	1.000	30	0%	19	36.8%	15	33.3%	-	-	-	NULL
INPP5J	27124	genome.wustl.edu	37	22	31524467	31524467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002837.1	+1	validated	p.R306W	1.000	54	0%	23	21.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
LIMK2	3985	genome.wustl.edu	37	22	31673087	31673087	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031801.1	+1	reviewed	p.I674	1.000	80	0%	37	27%	7	14.2%	-	-	-	HMMPfam_PP1_inhibitor,superfamily_PP1_inhibitor
PIK3IP1	113791	genome.wustl.edu	37	22	31679207	31679207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052880.4	-1	validated	p.P219S	1.000	87	0%	38	21.1%	27	14.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PIK3IP1	113791	genome.wustl.edu	37	22	31685195	31685195	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402249	-1	known	p.Q231	0.034	29	0%	19	36.8%	0	-	-	-	-	NULL
PISD	23761	genome.wustl.edu	37	22	32015731	32015731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014338.3	-1	validated	p.R332H	1.000	51	0%	21	23.8%	23	34.7%	probably_damaging(0.993)	tolerated(0.12)	deleterious(0.711)	HMMPfam_PS_Dcarbxylase
PRR14L	253143	genome.wustl.edu	37	22	32072940	32072940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397493	-1	known	p.A2082T	0.000	14	0%	11	36.4%	0	-	benign(0.29)	deleterious(0.05)	neutral(0.435)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32160977	32160977	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014662.2	+1	validated	p.D70	1.000	242	0%	173	20.8%	7	42.8%	-	-	-	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32480452	32480452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000343.3	+1	reviewed	p.A231T	0.094	345	0%	221	29.4%	5	40%	benign(0.001)	tolerated(0.14)	neutral(0.249)	HMMPfam_SSF
SLC5A4	6527	genome.wustl.edu	37	22	32633303	32633303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014227.2	-1	validated	p.A198T	1.000	77	0%	30	23.3%	1	100%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1
TOM1	10043	genome.wustl.edu	37	22	35726356	35726356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135732.1	+1	reviewed	p.C261Y	1.000	212	0%	104	19.2%	34	14.7%	benign(0.242)	deleterious(0)	deleterious(0.469)	HMMPfam_GAT,superfamily_SSF89009
HMOX1	3162	genome.wustl.edu	37	22	35782760	35782760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002133.1	+1	reviewed	p.P76H	1.000	83	1.2%	39	28.2%	30	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
RASD2	23551	genome.wustl.edu	37	22	35948032	35948032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014310.3	+1	reviewed	p.L252I	0.999	36	0%	16	37.5%	3	0%	benign(0.001)	tolerated(0.63)	neutral(0.004)	NULL
APOL6	80830	genome.wustl.edu	37	22	36055571	36055571	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030641.3	+1	reviewed	p.L320	0.000	69	0%	43	37.2%	2	0%	-	-	-	NULL
APOL4	80832	genome.wustl.edu	37	22	36587263	36587263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000352371	-1	known	p.V305I	0.000	52	0%	34	11.8%	26	30.7%	possibly_damaging(0.888)	tolerated(0.37)	neutral(0.366)	HMMPfam_ApoL
APOL2	23780	genome.wustl.edu	37	22	36624081	36624081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030882.2	-1	reviewed	p.G128D	0.833	235	0%	113	31.9%	32	40.6%	possibly_damaging(0.47)	tolerated(0.1)	neutral(0.442)	HMMPfam_ApoL
TXN2	25828	genome.wustl.edu	37	22	36863923	36863923	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012473.3	-1	reviewed	p.D143	1.000	135	0%	64	14.1%	182	17%	-	-	-	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin
CSF2RB	1439	genome.wustl.edu	37	22	37331409	37331409	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000395.2	+1	reviewed	p.V444	0.189	56	0%	22	27.3%	0	-	-	-	-	NULL
CYTH4	27128	genome.wustl.edu	37	22	37705303	37705303	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013385.3	+1	reviewed	p.D249	0.990	137	0%	76	23.7%	7	0%	-	-	-	superfamily_Sec7
ELFN2	114794	genome.wustl.edu	37	22	37770616	37770616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.S320I	1.000	98	0%	34	26.5%	0	-	possibly_damaging(0.574)	deleterious(0.02)	deleterious(0.580)	HMMSmart_FN3
MFNG	4242	genome.wustl.edu	37	22	37876341	37876341	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424765	-1	known	p.L110	0.765	91	0%	55	10.9%	0	-	-	-	-	NULL
CDC42EP1	11135	genome.wustl.edu	37	22	37964407	37964407	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152243.2	+1	reviewed	p.P252	0.013	12	0%	12	41.7%	20	80%	-	-	-	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38119289	38119289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039141.2	+1	reviewed	p.Q242H	0.641	156	0%	105	13.3%	1	0%	possibly_damaging(0.931)	deleterious(0.02)	deleterious(0.760)	NULL
GCAT	23464	genome.wustl.edu	37	22	38211725	38211725	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014291.3	+1	reviewed	p.R290	1.000	91	0%	42	35.7%	36	22.2%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PyrdxlP-dep_Trfase_major
BAIAP2L2	80115	genome.wustl.edu	37	22	38483215	38483215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025045.4	-1	validated	p.P392H	0.777	21	0%	21	38.1%	7	0%	probably_damaging(0.953)	deleterious(0.02)	deleterious(0.780)	superfamily_SH3-domain
PLA2G6	8398	genome.wustl.edu	37	22	38509564	38509564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003560.2	-1	reviewed	p.P711L	1.000	94	0%	52	28.8%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_FabD/lysophospholipase-like
KDELR3	11015	genome.wustl.edu	37	22	38877428	38877428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016657.1	+1	reviewed	p.T188I	1.000	173	0%	93	24.7%	39	46.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SUN2	25777	genome.wustl.edu	37	22	39148614	39148614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015374.1	-1	validated	p.R7H	1.000	25	0%	15	40%	42	38%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
APOBEC3B	9582	genome.wustl.edu	37	22	39388140	39388140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004900.3	+1	reviewed	p.R374W	0.005	114	0%	49	30.6%	5	40%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
APOBEC3D	140564	genome.wustl.edu	37	22	39421655	39421655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152426.3	+1	reviewed	p.R195H	0.000	352	0%	170	28.8%	2	0%	benign(0.006)	tolerated(0.27)	neutral(0.034)	NULL
APOBEC3D	140564	genome.wustl.edu	37	22	39427766	39427766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152426.3	+1	reviewed	p.S277Y	0.000	426	0%	219	10.5%	5	0%	benign(0.057)	tolerated(0.82)	neutral(0.004)	HMMPfam_APOBEC_N,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine deaminase-like
MGAT3	4248	genome.wustl.edu	37	22	39884801	39884801	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098270.1	+1	reviewed	p.A483	0.878	24	0%	10	40%	1	0%	-	-	-	HMMPfam_Glyco_transf_17
CACNA1I	8911	genome.wustl.edu	37	22	39996567	39996567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021096.3	+1	reviewed	p.V131L	1.000	113	0%	33	12.1%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TNRC6B	23112	genome.wustl.edu	37	22	40718911	40718911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015088.2	+1	validated	p.V1613A	1.000	90	0%	45	37.8%	11	27.2%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ADSL	158	genome.wustl.edu	37	22	40760365	40760365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000026.2	+1	reviewed	p.R396H	1.000	73	0%	33	33.3%	140	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_L-aspartase-like,HMMPfam_ADSL_C
SGSM3	27352	genome.wustl.edu	37	22	40801789	40801789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015705.4	+1	validated	p.R252H	1.000	120	0%	60	25%	99	57.5%	possibly_damaging(0.81)	deleterious(0.04)	deleterious(0.654)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
ST13	6767	genome.wustl.edu	37	22	41240911	41240911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003932.3	-1	reviewed	p.I83L	1.000	88	0%	60	38.3%	123	40.6%	benign(0.002)	tolerated(1)	-	NULL
L3MBTL2	83746	genome.wustl.edu	37	22	41623254	41623254	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.C583	0.956	10	0.000	8	0.625	46	54.3%	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
ZC3H7B	23264	genome.wustl.edu	37	22	41735013	41735013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017590.4	+1	reviewed	p.V212M	0.869	177	0%	102	31.4%	39	35.8%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
XRCC6	2547	genome.wustl.edu	37	22	42032532	42032532	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001469.3	+1	reviewed	p.I116S	0.760	151	0%	85	23.5%	419	24.5%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_Ku_N,superfamily_SSF53300
MEI1	150365	genome.wustl.edu	37	22	42159297	42159297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152513.3	+1	validated	p.C747Y	0.987	225	0%	147	27.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	superfamily_ARM repeat
CCDC134	79879	genome.wustl.edu	37	22	42209293	42209293	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024821.2	+1	validated	p.T112	0.845	126	0.8%	92	16.3%	6	33.3%	-	-	-	NULL
LOC100289204	100289204	genome.wustl.edu	37	22	42537288	42537288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343781.1	+1	model	p.V193I	1.000	58	0%	25	24%	1	0%	unknown(0)	-	-	NULL
CYP2D7P1	1564	genome.wustl.edu	37	22	42537980	42537980	+	RNA	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002570.2	-1	validated	NULL	0.001	97	0%	35	28.6%	3	100%	unknown(0)	deleterious(0)	-	-
TCF20	6942	genome.wustl.edu	37	22	42607358	42607358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.K1318N	1.000	570	0%	288	31.2%	27	33.3%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
TCF20	6942	genome.wustl.edu	37	22	42607886	42607886	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.G1142	0.656	334	0.3%	157	33.8%	19	31.5%	-	-	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42610946	42610946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.Q122H	1.000	360	0.3%	228	10.5%	16	12.5%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CYB5R3	1727	genome.wustl.edu	37	22	43023624	43023624	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000398.6	-1	reviewed	p.I178	0.813	76	0%	43	34.9%	153	32%	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
A4GALT	53947	genome.wustl.edu	37	22	43089670	43089670	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017436.4	-1	reviewed	p.C96	1.000	56	0%	24	20.8%	24	25%	-	-	-	NULL
MCAT	27349	genome.wustl.edu	37	22	43533197	43533197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173467.4	-1	reviewed	p.A207T	1.000	134	0%	78	14.1%	54	14.8%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase
EFCAB6	64800	genome.wustl.edu	37	22	43950865	43950865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.Y1178H	0.005	125	0%	76	19.7%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_EF-hand
EFCAB6	64800	genome.wustl.edu	37	22	43995949	43995949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022785.2	-1	validated	p.R959M	0.982	637	0.2%	352	14.5%	2	50%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44323035	44323035	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025225.2	+1	reviewed	p.D136	0.101	58	0%	26	26.9%	3	33.3%	-	-	-	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
PNPLA3	80339	genome.wustl.edu	37	22	44324766	44324766	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025225.2	+1	reviewed	p.G161	0.057	111	0%	55	47.3%	1	100%	-	-	-	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
SAMM50	25813	genome.wustl.edu	37	22	44359214	44359214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015380.4	+1	validated	p.E24K	1.000	382	0%	203	28.1%	82	52.4%	benign(0.167)	tolerated(0.28)	neutral(0.046)	NULL
PRR5-ARHGAP8	553158	genome.wustl.edu	37	22	45210607	45210607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181334.4	+1	reviewed	p.V155I	0.009	87	0%	67	32.8%	13	30.7%	benign(0.002)	tolerated(0.4)	neutral(0.016)	HMMSmart_SEC14,superfamily_CRAL_TRIO_C
PHF21B	112885	genome.wustl.edu	37	22	45309802	45309802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138415.3	-1	validated	p.S244N	0.962	61	0%	41	34.1%	0	-	benign(0.119)	deleterious(0)	neutral(0.454)	NULL
NUP50	10762	genome.wustl.edu	37	22	45574280	45574280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007172.3	+1	reviewed	p.R168W	0.997	359	0%	202	23.8%	20	40%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_NUP50
UPK3A	7380	genome.wustl.edu	37	22	45681835	45681835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006953.3	+1	reviewed	p.Q22H	1.000	142	0%	89	11.2%	1	0%	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	NULL
FBLN1	2192	genome.wustl.edu	37	22	45946457	45946457	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006486.2	+1	reviewed	p.A553	1.000	77	0%	32	12.5%	2710	32.3%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
CELSR1	9620	genome.wustl.edu	37	22	46794471	46794471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.A1826T	0.147	47	0%	23	39.1%	16	75%	benign(0.018)	tolerated(0.6)	neutral(0.005)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CELSR1	9620	genome.wustl.edu	37	22	46835284	46835284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.R1403H	1.000	62	0%	26	34.6%	8	0%	possibly_damaging(0.644)	tolerated(0.21)	neutral(0.270)	superfamily_EGF/Laminin
CERK	64781	genome.wustl.edu	37	22	47108155	47108155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022766.5	-1	validated	p.P139S	0.999	125	0%	70	11.4%	19	15.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_cat,HMMSmart_DAGKc
ENSG00000246355	0	genome.wustl.edu	37	22	50277290	50277290	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502014	-1	novel	NULL	0.005	100	0%	49	24.5%	4	75%	-	-	-	-
ZBED4	9889	genome.wustl.edu	37	22	50280200	50280200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014838.2	+1	validated	p.L964I	1.000	49	0%	23	34.8%	15	33.3%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
TRABD	80305	genome.wustl.edu	37	22	50635732	50635732	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025204.2	+1	provisional	p.E161	1.000	23	4.3%	17	29.4%	78	35.8%	-	-	-	HMMPfam_TraB
SELO	83642	genome.wustl.edu	37	22	50655737	50655737	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031454.1	+1	reviewed	p.R650H	0.000	22	0%	10	70%	27	48.1%	benign(0.002)	tolerated(0.57)	neutral(0.006)	NULL
PPP6R2	9701	genome.wustl.edu	37	22	50832406	50832406	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014678.3	+1	validated	p.T23	0.001	318	0%	186	11.8%	33	21.2%	-	-	-	NULL
SHANK3	85358	genome.wustl.edu	37	22	51143508	51143508	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080420.1	+1	reviewed	p.D687	0.736	33	0%	24	25%	4	25%	-	-	-	NULL
KIR2DL5B	553128	genome.wustl.edu	37	GL000209.1	30781	30781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344867	+1	known	p.G239S	NULL	656	0.3%	434	29.5%	0	-	benign(0.402)	tolerated(0.12)	neutral(0.390)	NULL
ENSG00000237375	0	genome.wustl.edu	37	GL000213.1	139119	139119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327822	-1	known	p.L57I	NULL	122	0%	68	22.1%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
CSF2RA	1438	genome.wustl.edu	37	X	1407700	1407700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006140.4	+1	reviewed	p.A131V	0.000	526	0.2%	348	36.5%	1	0%	benign(0.049)	tolerated(0.44)	neutral(0.015)	superfamily_Fibronectin type III
SLC25A6	293	genome.wustl.edu	37	X	1505636	1505636	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001636.3	-1	reviewed	p.T252	0.943	112	0%	50	34%	707	36.3%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
AKAP17A	8227	genome.wustl.edu	37	X	1713084	1713084	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005088.2	+1	validated	p.G243	0.977	41	0%	23	21.7%	30	30%	-	-	-	NULL
ZBED1	9189	genome.wustl.edu	37	X	2408412	2408412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004729.3	-1	reviewed	p.G117S	0.872	63	0%	32	28.1%	56	48.2%	benign(0)	tolerated(0.95)	-	NULL
GYG2	8908	genome.wustl.edu	37	X	2772094	2772094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003918.2	+1	reviewed	p.A106T	1.000	78	0%	50	16%	6	50%	benign(0.025)	tolerated(0.35)	neutral(0.022)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
ARSD	414	genome.wustl.edu	37	X	2835950	2835950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001669.2	-1	reviewed	p.R253H	0.006	58	0%	27	18.5%	39	41%	benign(0.026)	tolerated(0.64)	neutral(0.004)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSD	414	genome.wustl.edu	37	X	2838738	2838738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001669.2	-1	reviewed	p.A115T	0.794	147	0%	74	28.4%	45	60%	benign(0.005)	tolerated(0.1)	neutral(0.286)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
ARSE	415	genome.wustl.edu	37	X	2867585	2867585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000047.2	-1	reviewed	p.A205D	0.008	147	0%	83	12%	1	0%	benign(0.289)	deleterious(0.02)	deleterious(0.472)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSE	415	genome.wustl.edu	37	X	2867735	2867735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000047.2	-1	reviewed	p.A155V	0.000	133	0.8%	74	25.7%	2	0%	benign(0)	tolerated(0.36)	neutral(0.020)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSE	415	genome.wustl.edu	37	X	2873507	2873507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000047.2	-1	reviewed	p.C86Y	0.997	24	0%	19	26.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core
ARSE	415	genome.wustl.edu	37	X	2873545	2873545	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000047.2	-1	reviewed	p.G73	0.061	45	0%	29	48.3%	1	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
MXRA5	25878	genome.wustl.edu	37	X	3235844	3235844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.V1960I	1.000	97	1%	66	19.7%	6	0%	benign(0.307)	tolerated(0.28)	neutral(0.127)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3235845	3235845	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.D1959	0.942	95	0%	66	36.4%	6	0%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MXRA5	25878	genome.wustl.edu	37	X	3240920	3240920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.H936Y	0.000	278	0%	173	28.9%	2	0%	benign(0.016)	tolerated(0.06)	neutral(0.323)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3248757	3248757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.E82D	0.842	236	0%	96	36.5%	1	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
NLGN4X	57502	genome.wustl.edu	37	X	5811228	5811228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020742.2	-1	reviewed	p.A694V	0.998	296	0%	144	33.3%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5811396	5811396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020742.2	-1	reviewed	p.R638H	1.000	501	0%	260	32.7%	5	0%	benign(0.005)	tolerated(0.25)	neutral(0.037)	NULL
NLGN4X	57502	genome.wustl.edu	37	X	5821781	5821781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020742.2	-1	reviewed	p.D313G	1.000	176	0%	83	24.1%	6	83.3%	benign(0.113)	deleterious(0.04)	neutral(0.358)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
PNPLA4	8228	genome.wustl.edu	37	X	7870047	7870047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142389.1	-1	reviewed	p.A205T	0.014	247	0.4%	125	33.6%	39	53.8%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
KAL1	3730	genome.wustl.edu	37	X	8565163	8565163	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000216.2	-1	reviewed	p.C151	0.294	147	0%	96	35.4%	1	0%	-	-	-	HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,PatternScan_4_DISULFIDE_CORE
TBL1X	6907	genome.wustl.edu	37	X	9656079	9656079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139466.1	+1	reviewed	p.R127H	1.000	38	0%	18	38.9%	13	53.8%	possibly_damaging(0.631)	deleterious(0.01)	deleterious(0.626)	NULL
GPR143	4935	genome.wustl.edu	37	X	9714123	9714123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000273.2	-1	reviewed	p.V227M	0.010	115	0%	48	14.6%	1	0%	possibly_damaging(0.843)	deleterious(0.03)	deleterious(0.688)	HMMPfam_Ocular_alb
WWC3	55841	genome.wustl.edu	37	X	10096179	10096179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.T753I	0.001	79	0%	37	27%	1	0%	benign(0.031)	tolerated(0.2)	neutral(0.051)	NULL
WWC3	55841	genome.wustl.edu	37	X	10106872	10106872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.R994W	1.000	57	0%	34	41.2%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MID1	4281	genome.wustl.edu	37	X	10535158	10535158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000381.2	-1	reviewed	p.E144K	1.000	204	0%	119	29.4%	11	0%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00336
MID1	4281	genome.wustl.edu	37	X	10535512	10535512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000381.2	-1	reviewed	p.A26T	1.000	236	0%	150	26.7%	7	14.2%	probably_damaging(0.979)	tolerated(0.19)	deleterious(0.471)	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
FRMPD4	9758	genome.wustl.edu	37	X	12627848	12627848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014728.3	+1	reviewed	p.T56I	1.000	219	0%	104	21.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_PDZ
TLR8	51311	genome.wustl.edu	37	X	12938453	12938453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138636.4	+1	reviewed	p.P432S	1.000	395	0.3%	353	28%	0	-	possibly_damaging(0.468)	tolerated(0.12)	neutral(0.414)	superfamily_SSF52047
EGFL6	25975	genome.wustl.edu	37	X	13588004	13588004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015507.3	+1	reviewed	p.A8	0.101	28	0%	14	28.6%	0	-	-	-	-	NULL
EGFL6	25975	genome.wustl.edu	37	X	13636147	13636147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015507.3	+1	reviewed	p.E359D	0.015	499	0%	246	17.5%	6	50%	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	NULL
OFD1	8481	genome.wustl.edu	37	X	13775906	13775906	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003611.2	+1	reviewed	p.D513	0.006	246	0%	142	12%	42	11.9%	-	-	-	NULL
FANCB	2187	genome.wustl.edu	37	X	14871176	14871176	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.T437	0.000	369	0.3%	279	20.8%	2	100%	-	-	-	NULL
MOSPD2	158747	genome.wustl.edu	37	X	14932661	14932661	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152581.3	+1	validated	p.S343	0.990	199	0%	151	16.6%	15	0%	-	-	-	HMMPfam_Motile_Sperm,superfamily_PapD-like
ASB11	140456	genome.wustl.edu	37	X	15311420	15311420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080873.1	-1	reviewed	p.G131E	1.000	232	0%	147	27.2%	0	-	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PIGA	5277	genome.wustl.edu	37	X	15349370	15349370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002641.2	-1	reviewed	p.I228S	0.997	147	0%	76	27.6%	3	33.3%	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ZRSR2	8233	genome.wustl.edu	37	X	15841113	15841113	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005089.3	+1	reviewed	p.S399	0.585	182	0.5%	84	33.3%	17	47%	-	-	-	NULL
NHS	4810	genome.wustl.edu	37	X	17744314	17744314	+	Silent	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.G675	1.000	1645	0.1%	900	25%	0	-	-	-	-	NULL
NHS	4810	genome.wustl.edu	37	X	17744548	17744548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.S753R	1.000	1119	0%	560	27.7%	2	0%	probably_damaging(0.978)	tolerated(0.21)	neutral(0.464)	NULL
NHS	4810	genome.wustl.edu	37	X	17745606	17745606	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.P1106H	0.054	1044	0%	526	24%	3	0%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
SCML1	6322	genome.wustl.edu	37	X	17770061	17770061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037540.1	+1	validated	p.P277H	0.000	818	0.1%	427	25.1%	7	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
CDKL5	6792	genome.wustl.edu	37	X	18582616	18582616	+	Missense_Mutation	SNP	C	C	T	rs122460159		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037343.1	+1	reviewed	p.A40V	0.994	332	0%	242	21.9%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PPEF1	5475	genome.wustl.edu	37	X	18725944	18725944	+	Silent	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006240.2	+1	reviewed	p.T15	0.076	179	0%	109	31.2%	0	-	-	-	-	HMMSmart_SM00015
PPEF1	5475	genome.wustl.edu	37	X	18768032	18768032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006240.2	+1	reviewed	p.D120N	0.015	658	0.2%	472	27.1%	0	-	probably_damaging(0.979)	tolerated(0.35)	neutral(0.443)	HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
PHKA2	5256	genome.wustl.edu	37	X	18972476	18972476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.R45W	0.998	246	0.8%	140	27.1%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
SH3KBP1	30011	genome.wustl.edu	37	X	19702025	19702025	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031892.2	-1	reviewed	p.G214	0.999	608	0.2%	389	30.1%	21	71.4%	-	-	-	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19764516	19764516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031892.2	-1	reviewed	p.A69V	1.000	561	0%	337	25.5%	11	63.6%	benign(0.141)	tolerated(0.15)	neutral(0.253)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20043997	20043997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.R320C	0.980	465	0%	248	26.6%	0	-	unknown(0)	deleterious(0)	-	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20071040	20071040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152780.3	-1	validated	p.R184H	1.000	346	0%	191	25.1%	1	0%	benign(0.008)	tolerated(0.11)	neutral(0.272)	NULL
CNKSR2	22866	genome.wustl.edu	37	X	21534644	21534644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.E284D	1.000	335	0.3%	275	10.5%	2	0%	benign(0.021)	tolerated(0.16)	neutral(0.060)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
YY2	404281	genome.wustl.edu	37	X	21875043	21875043	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206923.3	+1	reviewed	p.G147	0.005	142	0%	71	35.2%	0	-	-	-	-	NULL
MBTPS2	51360	genome.wustl.edu	37	X	21900747	21900747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015884.3	+1	reviewed	p.G512*	1.000	241	0%	120	27.5%	5	0%	-	-	-	HMMPfam_Peptidase_M50
SMS	6611	genome.wustl.edu	37	X	21995200	21995200	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457085	+1	known	p.R209G	1.000	237	0%	131	25.2%	111	89.1%	-	-	-	HMMPfam_Spermine_synth
SMS	6611	genome.wustl.edu	37	X	22010813	22010813	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004595.2	+1	reviewed	p.V348	1.000	332	0%	178	27%	236	0.8%	-	-	-	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
PHEX	5251	genome.wustl.edu	37	X	22112104	22112104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000444.4	+1	reviewed	p.R246W	1.000	372	0%	254	24.8%	3	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
DDX53	168400	genome.wustl.edu	37	X	23018663	23018663	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182699.2	+1	validated	p.C163	0.001	365	0%	228	30.3%	0	-	-	-	-	superfamily_SSF52540
LOC100289205	100289205	genome.wustl.edu	37	X	23353211	23353211	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343809.1	-1	model	p.E38*	1.000	27	0%	16	43.8%	3	0%	-	-	-	NULL
PTCHD1	139411	genome.wustl.edu	37	X	23397778	23397778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.I141T	1.000	251	0%	134	27.6%	3	100%	benign(0.085)	tolerated(0.1)	neutral(0.292)	HMMPfam_Patched
PTCHD1	139411	genome.wustl.edu	37	X	23411079	23411079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173495.2	+1	validated	p.L482I	1.000	400	0.3%	236	30.1%	2	50%	possibly_damaging(0.895)	tolerated(0.1)	deleterious(0.639)	HMMPfam_Patched
ZFX	7543	genome.wustl.edu	37	X	24197479	24197479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003410.3	+1	reviewed	p.D80Y	1.000	630	0.2%	384	30.5%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zfx_Zfy_act
FAM48B1	100130302	genome.wustl.edu	37	X	24382953	24382953	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136234.1	+1	inferred	p.G692	0.000	102	0%	56	28.6%	0	-	-	-	-	NULL
FAM48B1	100130302	genome.wustl.edu	37	X	24383534	24383534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136234.1	+1	inferred	p.A886V	0.000	148	0%	71	21.1%	0	-	-	-	-	NULL
PDK3	5165	genome.wustl.edu	37	X	24516996	24516996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142386.2	+1	reviewed	p.E100G	1.000	139	0%	72	15.3%	8	62.5%	possibly_damaging(0.759)	deleterious(0.03)	deleterious(0.645)	HMMPfam_BCDHK_Adom3,superfamily_SSF69012
MAGEB5	347541	genome.wustl.edu	37	X	26235884	26235884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_293407.6	+1	model	p.L248M	0.006	22	0%	16	25%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_MAGE
IL1RAPL1	11141	genome.wustl.edu	37	X	29686618	29686618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014271.3	+1	reviewed	p.L259M	1.000	113	0%	85	22.4%	0	-	benign(0.154)	tolerated(0.15)	neutral(0.255)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
IL1RAPL1	11141	genome.wustl.edu	37	X	29959909	29959909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014271.3	+1	reviewed	p.G400E	1.000	407	0%	274	16.8%	0	-	benign(0.018)	tolerated(1)	neutral(0.001)	superfamily_Toll/Interleukin receptor TIR domain
IL1RAPL1	11141	genome.wustl.edu	37	X	29972789	29972789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014271.3	+1	reviewed	p.R451I	1.000	192	0%	136	33.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain
MAGEB3	4114	genome.wustl.edu	37	X	30255030	30255030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002365.4	+1	reviewed	p.A330D	0.000	129	0%	47	23.4%	0	-	probably_damaging(0.961)	tolerated(0.14)	deleterious(0.653)	NULL
GK	2710	genome.wustl.edu	37	X	30726245	30726245	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.A317	0.762	330	0%	211	11.4%	3	0%	-	-	-	HMMPfam_FGGY_C,superfamily_SSF53067
GK	2710	genome.wustl.edu	37	X	30738974	30738974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128127.1	+1	reviewed	p.P449S	1.000	141	0%	75	26.7%	4	0%	benign(0.014)	tolerated(0.11)	neutral(0.272)	HMMPfam_FGGY_C,superfamily_SSF53067
TAB3	257397	genome.wustl.edu	37	X	30872753	30872753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152787.3	-1	reviewed	p.Q343H	1.000	271	0%	178	14.6%	12	0%	possibly_damaging(0.496)	tolerated(0.1)	neutral(0.452)	NULL
FTHL17	53940	genome.wustl.edu	37	X	31089563	31089563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031894.2	-1	reviewed	p.L170M	1.000	80	0%	27	18.5%	0	-	possibly_damaging(0.941)	tolerated(0.13)	deleterious(0.639)	superfamily_Ferritin/RR_like
DMD	1756	genome.wustl.edu	37	X	31279077	31279077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.S3094Y	1.000	102	0%	76	15.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_efhand_1,superfamily_EF-hand
DMD	1756	genome.wustl.edu	37	X	31279112	31279112	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.C3082*	1.000	112	0%	89	12.4%	4	0%	-	-	-	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain
DMD	1756	genome.wustl.edu	37	X	31792256	31792256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.A2455T	0.997	217	0%	128	25.8%	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
DMD	1756	genome.wustl.edu	37	X	32361289	32361289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.A1901T	1.000	362	0%	283	24%	0	-	possibly_damaging(0.849)	tolerated(0.19)	neutral(0.376)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	32383221	32383221	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.T1647	0.381	304	0%	260	27.3%	2	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47A	158724	genome.wustl.edu	37	X	34149302	34149302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.A365V	0.001	261	0%	131	36.6%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962866	34962866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.D640Y	0.013	692	0%	367	27.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CXorf59	286464	genome.wustl.edu	37	X	36091444	36091444	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173695.2	+1	validated	p.G127*	0.366	355	0%	246	31.7%	0	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37029406	37029406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.G975C	0.015	580	0.2%	307	10.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
CYBB	1536	genome.wustl.edu	37	X	37655375	37655375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000397.3	+1	reviewed	p.L219I	0.999	328	0%	316	24.1%	9	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ferric_reduct
CXorf27	25763	genome.wustl.edu	37	X	37850307	37850307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012274.1	+1	validated	p.A72V	0.138	185	0.5%	108	30.6%	0	-	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	superfamily_Histone-fold
SYTL5	94122	genome.wustl.edu	37	X	37953664	37953664	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138780.2	+1	reviewed	p.T316	0.922	433	0%	355	12.4%	0	-	-	-	-	NULL
SRPX	8406	genome.wustl.edu	37	X	38033507	38033507	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006307.4	-1	validated	p.C85	0.996	144	0%	93	11.8%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
RPGR	6103	genome.wustl.edu	37	X	38146513	38146513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339363	-1	known	p.C785Y	0.000	77	0%	57	31.6%	0	-	benign(0.15)	tolerated(0.19)	neutral(0.062)	NULL
RPGR	6103	genome.wustl.edu	37	X	38156698	38156698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034853.1	-1	reviewed	p.S418Y	0.005	157	0%	101	10.9%	8	0%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
BCOR	54880	genome.wustl.edu	37	X	39916463	39916463	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.R1514*	0.936	119	0%	71	22.5%	61	1.6%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
BCOR	54880	genome.wustl.edu	37	X	39932558	39932558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.P681S	1.000	65	0%	14	35.7%	23	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BCOR	54880	genome.wustl.edu	37	X	39934008	39934008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.E197D	1.000	146	0%	73	26%	22	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CXorf38	159013	genome.wustl.edu	37	X	40495962	40495962	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144970.2	-1	validated	p.L208	0.763	77	0%	47	14.9%	18	0%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40552057	40552057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.A583V	0.000	146	0%	107	31.8%	21	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
MED14	9282	genome.wustl.edu	37	X	40571531	40571531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.V266I	1.000	626	0.2%	392	25.8%	14	0%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	NULL
MED14	9282	genome.wustl.edu	37	X	40573902	40573902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.A137T	1.000	186	0%	104	20.2%	30	80%	benign(0.202)	tolerated(0.1)	neutral(0.306)	HMMPfam_MED14
USP9X	8239	genome.wustl.edu	37	X	41002675	41002675	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.L431	1.000	264	0.4%	165	27.3%	14	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41055877	41055877	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.G1373	0.930	226	0%	183	26.2%	48	0%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41075689	41075689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.D1957N	1.000	365	0%	250	27.6%	64	1.5%	possibly_damaging(0.672)	deleterious(0.02)	deleterious(0.621)	superfamily_Cysteine proteinases
DDX3X	1654	genome.wustl.edu	37	X	41203305	41203305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001356.3	+1	reviewed	p.R263H	1.000	214	0%	101	29.7%	112	29.4%	probably_damaging(0.98)	tolerated(0.07)	deleterious(0.743)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX3X	1654	genome.wustl.edu	37	X	41206134	41206134	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001356.3	+1	reviewed	p.N546	0.999	342	0%	204	24.5%	119	36.1%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
CASK	8573	genome.wustl.edu	37	X	41414858	41414858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003688.3	-1	reviewed	p.R613*	1.000	166	0.6%	110	25.5%	3	0%	-	-	-	superfamily_SH3
CASK	8573	genome.wustl.edu	37	X	41469179	41469179	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003688.3	-1	reviewed	p.Q378P	1.000	170	0%	104	11.5%	14	0%	benign(0.071)	tolerated(1)	neutral(0.005)	HMMSmart_L27,HMMPfam_L27,superfamily_SSF101288
CASK	8573	genome.wustl.edu	37	X	41485870	41485870	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003688.3	-1	reviewed	p.D334	1.000	99	0%	68	26.5%	6	0%	-	-	-	NULL
GPR34	2857	genome.wustl.edu	37	X	41554981	41554981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097579.1	+1	validated	p.Q32R	0.000	232	0%	147	13.6%	3	0%	benign(0.002)	tolerated(0.06)	neutral(0.323)	superfamily_Family A G protein-coupled receptor-like
KDM6A	7403	genome.wustl.edu	37	X	44919285	44919285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.P405S	1.000	72	0%	59	23.7%	4	25%	possibly_damaging(0.465)	tolerated(0.19)	neutral(0.203)	NULL
KDM6A	7403	genome.wustl.edu	37	X	44921948	44921948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021140.2	+1	reviewed	p.M494I	1.000	139	0%	91	34.1%	6	66.6%	benign(0.002)	tolerated(0.28)	neutral(0.032)	NULL
KDM6A	7403	genome.wustl.edu	37	X	44928919	44928919	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433797	+1	known	p.L316F	1.000	195	0%	126	35.7%	13	23%	-	-	-	NULL
ZNF674	641339	genome.wustl.edu	37	X	46359306	46359306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.R573I	0.041	171	0%	119	33.6%	3	100%	benign(0.281)	deleterious(0)	deleterious(0.530)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF674	641339	genome.wustl.edu	37	X	46388266	46388266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039891.2	-1	validated	p.L32I	0.996	189	0%	125	26.4%	3	0%	possibly_damaging(0.892)	deleterious(0.02)	deleterious(0.734)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SLC9A7	84679	genome.wustl.edu	37	X	46466504	46466504	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032591.1	-1	reviewed	p.G687	0.037	85	2.4%	48	31.2%	7	100%	-	-	-	NULL
PHF16	9767	genome.wustl.edu	37	X	46913930	46913930	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.P448H	1.000	151	0%	97	14.4%	12	33.3%	benign(0.221)	tolerated(0.05)	neutral(0.367)	NULL
PHF16	9767	genome.wustl.edu	37	X	46917782	46917782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.S592L	0.003	324	0.3%	215	11.6%	15	33.3%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
UBA1	7317	genome.wustl.edu	37	X	47060743	47060743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.A219V	1.000	71	0%	21	33.3%	266	12.7%	benign(0.004)	deleterious(0.01)	neutral(0.406)	superfamily_MoeB
USP11	8237	genome.wustl.edu	37	X	47098790	47098790	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.G152	0.035	114	0.9%	59	30.5%	7	28.5%	-	-	-	HMMSmart_DUSP,HMMPfam_DUF1055
USP11	8237	genome.wustl.edu	37	X	47098846	47098846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.G171D	0.989	132	0%	69	33.3%	17	29.4%	possibly_damaging(0.527)	tolerated(0.06)	deleterious(0.500)	HMMSmart_DUSP,HMMPfam_DUF1055
USP11	8237	genome.wustl.edu	37	X	47101616	47101616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004651.3	+1	reviewed	p.C482R	1.000	101	0%	44	11.4%	22	22.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UCH,superfamily_SSF54001
ZNF41	7592	genome.wustl.edu	37	X	47308390	47308390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007130.2	-1	reviewed	p.H260R	0.000	663	0%	380	13.9%	9	66.6%	benign(0.427)	tolerated(0.49)	neutral(0.150)	superfamily_C2H2 and C2HC zinc fingers
ZNF41	7592	genome.wustl.edu	37	X	47308819	47308819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007130.2	-1	reviewed	p.H117R	0.781	197	0%	119	21.8%	5	100%	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
ARAF	369	genome.wustl.edu	37	X	47422681	47422681	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001654.3	+1	reviewed	p.V51	0.880	42	0%	20	30%	72	0%	-	-	-	HMMPfam_RBD,HMMSmart_RBD,superfamily_SSF54236
SYN1	6853	genome.wustl.edu	37	X	47435577	47435577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006950.3	-1	reviewed	p.A371T	0.995	117	0%	54	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
ZNF81	347344	genome.wustl.edu	37	X	47747452	47747452	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.Q37*	0.700	185	0%	116	37.1%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
ZNF182	7569	genome.wustl.edu	37	X	47835606	47835606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.G627E	0.017	542	0%	386	33.2%	9	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF57667
ZNF182	7569	genome.wustl.edu	37	X	47837082	47837082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.R135H	0.000	195	0%	112	36.6%	6	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
ZNF630	57232	genome.wustl.edu	37	X	47918712	47918712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037735.2	-1	validated	p.K373N	0.984	284	0.4%	189	28%	2	100%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SSF57667
ZNF630	57232	genome.wustl.edu	37	X	47919273	47919273	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037735.2	-1	validated	p.K186	0.000	215	0%	122	28.7%	3	0%	-	-	-	NULL
SSX1	6756	genome.wustl.edu	37	X	48125761	48125761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005635.2	+1	reviewed	p.R169H	0.005	1080	0.1%	635	25.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SSXRD
SSX3	10214	genome.wustl.edu	37	X	48214135	48214135	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021014.2	-1	reviewed	p.K39T	0.107	582	0%	347	27.1%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SLC38A5	92745	genome.wustl.edu	37	X	48325238	48325238	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033518.2	-1	validated	p.A89	0.021	43	0%	10	40%	6	0%	-	-	-	HMMPfam_Aa_trans
EBP	10682	genome.wustl.edu	37	X	48382237	48382237	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006579.2	+1	reviewed	p.R26	0.000	162	0.6%	81	35.8%	105	90.4%	-	-	-	NULL
LOC729275	729275	genome.wustl.edu	37	X	48433568	48433568	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078586.1	-1	model	NULL	0.994	50	0%	41	22%	231	0%	-	-	-	-
RBM3	5935	genome.wustl.edu	37	X	48433980	48433980	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006743.3	+1	reviewed	p.R45	0.999	99	0%	55	36.4%	307	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
WDR13	64743	genome.wustl.edu	37	X	48457146	48457146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017883.4	+1	reviewed	p.T28M	1.000	56	0%	42	11.9%	40	0%	possibly_damaging(0.812)	tolerated(0.18)	neutral(0.361)	NULL
GATA1	2623	genome.wustl.edu	37	X	48650258	48650258	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002049.3	+1	reviewed	p.Q76H	1.000	584	0%	301	14.6%	0	-	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
HDAC6	10013	genome.wustl.edu	37	X	48672893	48672893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.P285T	1.000	261	0%	136	11%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48674965	48674965	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.C572	1.000	61	0%	31	29%	16	0%	-	-	-	HMMPfam_Hist_deacetyl,superfamily_SSF52768
HDAC6	10013	genome.wustl.edu	37	X	48682637	48682637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006044.2	+1	reviewed	p.P1171L	0.992	255	0%	125	31.2%	40	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP
SLC35A2	7355	genome.wustl.edu	37	X	48762367	48762367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447242	-1	known	p.A127V	0.109	37	0%	14	35.7%	46	80.4%	-	-	-	NULL
SLC35A2	7355	genome.wustl.edu	37	X	48762377	48762377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005660.1	-1	provisional	p.A270V	0.779	36	2.8%	13	30.8%	43	0%	benign(0.001)	tolerated(1)	-	HMMPfam_Nuc_sug_transp
KCND1	3750	genome.wustl.edu	37	X	48823116	48823116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419374	-1	known	p.C17Y	0.007	67	0%	29	27.6%	0	-	benign(0.359)	deleterious(0)	deleterious(0.558)	NULL
CCDC120	90060	genome.wustl.edu	37	X	48920067	48920067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033626.2	+1	reviewed	p.R40W	0.999	91	0%	55	30.9%	9	0%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
WDR45	11152	genome.wustl.edu	37	X	48934320	48934320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	p.R110C	1.000	89	0%	52	13.5%	96	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_WD40,superfamily_WD40_like
GPKOW	27238	genome.wustl.edu	37	X	48976108	48976108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327905	-1	known	p.C164Y	0.998	31	0%	24	33.3%	34	0%	-	-	-	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49032265	49032265	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453382	-1	known	p.R548C	0.041	275	0%	124	31.5%	16	87.5%	-	-	-	NULL
PRICKLE3	4007	genome.wustl.edu	37	X	49034348	49034348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006150.3	-1	reviewed	p.H317N	1.000	342	0%	169	28.4%	11	81.8%	benign(0.113)	tolerated(0.56)	neutral(0.015)	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CACNA1F	778	genome.wustl.edu	37	X	49061649	49061649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.R1961H	0.118	36	0%	18	27.8%	0	-	probably_damaging(0.988)	tolerated(0.59)	neutral(0.442)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49071847	49071847	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.A1142	1.000	185	0%	105	22.9%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49074456	49074456	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.V990	0.562	115	0%	74	24.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1F	778	genome.wustl.edu	37	X	49083563	49083563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.A382V	1.000	82	0%	35	34.3%	0	-	benign(0.428)	tolerated(0.65)	neutral(0.142)	NULL
AKAP4	8852	genome.wustl.edu	37	X	49957089	49957089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.V759I	0.998	195	0%	127	29.9%	0	-	probably_damaging(0.971)	deleterious(0.03)	deleterious(0.777)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49957538	49957538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.P609Q	0.674	627	0%	390	25.4%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49958668	49958668	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.A232	1.000	701	0%	427	29%	0	-	-	-	-	HMMPfam_RII_binding_1,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50052736	50052736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.P523S	0.025	202	0%	151	27.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
CCNB3	85417	genome.wustl.edu	37	X	50056937	50056937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.V1169M	1.000	204	0%	172	33.1%	0	-	possibly_damaging(0.473)	deleterious(0.01)	deleterious(0.561)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
CCNB3	85417	genome.wustl.edu	37	X	50085296	50085296	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.Q1204H	1.000	390	0%	218	12.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
SHROOM4	57477	genome.wustl.edu	37	X	50341281	50341281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.E1399D	0.010	256	0%	153	26.8%	0	-	probably_damaging(0.971)	tolerated(0.2)	neutral(0.462)	HMMPfam_ASD2
SHROOM4	57477	genome.wustl.edu	37	X	50376549	50376549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.Q842K	0.943	305	0%	173	24.9%	3	0%	possibly_damaging(0.643)	deleterious(0.02)	deleterious(0.609)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50378546	50378546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.P176H	1.000	75	0%	33	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BMP15	9210	genome.wustl.edu	37	X	50659058	50659058	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005448.2	+1	reviewed	p.Q210	0.115	410	0%	230	16.5%	0	-	-	-	-	NULL
BMP15	9210	genome.wustl.edu	37	X	50659399	50659399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005448.2	+1	reviewed	p.C324Y	0.995	479	0.4%	213	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501
GSPT2	23708	genome.wustl.edu	37	X	51487302	51487302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.V194I	0.000	136	0%	48	18.8%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
GSPT2	23708	genome.wustl.edu	37	X	51487855	51487855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.G378D	1.000	261	0%	150	29.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GTP_EFTU,superfamily_SSF52540
GSPT2	23708	genome.wustl.edu	37	X	51488494	51488494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.T591I	1.000	353	0%	175	22.9%	1	0%	benign(0.014)	tolerated(0.4)	neutral(0.017)	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C
ENSG00000245461	0	genome.wustl.edu	37	X	51488638	51488638	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502175	-1	novel	NULL	1.000	181	0%	88	30.7%	0	-	-	-	-	-
MAGED1	9500	genome.wustl.edu	37	X	51641396	51641396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005333.1	+1	reviewed	p.A641V	1.000	119	0%	76	32.9%	260	0%	unknown(0)	tolerated(0.49)	-	HMMPfam_MAGE
TSPYL2	64061	genome.wustl.edu	37	X	53115179	53115179	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022117.3	+1	reviewed	p.N535	0.002	86	0%	46	21.7%	24	66.6%	-	-	-	NULL
KDM5C	8242	genome.wustl.edu	37	X	53224235	53224235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.A1106T	1.000	105	0%	61	31.1%	63	58.7%	benign(0.011)	tolerated(0.62)	neutral(0.005)	NULL
KDM5C	8242	genome.wustl.edu	37	X	53228264	53228264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.T713M	1.000	218	0%	101	38.6%	73	46.5%	possibly_damaging(0.909)	deleterious(0)	deleterious(0.806)	HMMPfam_zf-C5HC2
KDM5C	8242	genome.wustl.edu	37	X	53247579	53247579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.A77V	1.000	212	0%	153	20.9%	32	28.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ARID,superfamily_ARID-like
IQSEC2	23096	genome.wustl.edu	37	X	53268428	53268428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111125.1	-1	validated	p.R1022C	1.000	225	0%	110	22.7%	1	0%	possibly_damaging(0.904)	tolerated(0.2)	neutral(0.407)	HMMSmart_PH,superfamily_SSF50729
SMC1A	8243	genome.wustl.edu	37	X	53432886	53432886	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006306.2	-1	reviewed	p.Y516	0.989	132	0.8%	87	10.3%	27	22.2%	-	-	-	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_SMC_hinge,superfamily_SSF52540
SMC1A	8243	genome.wustl.edu	37	X	53448965	53448965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375340	-1	known	p.W1R	0.090	118	0%	66	24.2%	1	0%	unknown(0)	-	-	NULL
RIBC1	158787	genome.wustl.edu	37	X	53455491	53455491	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031745.1	+1	provisional	p.R154*	0.006	329	0%	150	13.3%	5	0%	-	-	-	HMMPfam_RIB43A
HSD17B10	3028	genome.wustl.edu	37	X	53458422	53458422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.A239V	1.000	280	0%	123	29.3%	269	56.5%	benign(0.031)	tolerated(0.08)	neutral(0.301)	superfamily_NAD(P)-binding Rossmann-fold domains
HSD17B10	3028	genome.wustl.edu	37	X	53460824	53460824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.A13T	0.814	56	0%	29	27.6%	113	53%	benign(0.143)	tolerated(0.11)	neutral(0.284)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
HUWE1	10075	genome.wustl.edu	37	X	53561082	53561082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.T4303I	1.000	238	0%	138	21%	209	0%	unknown(0)	deleterious(0)	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53565352	53565352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.P3981H	1.000	124	0%	68	33.8%	191	90.5%	unknown(0)	deleterious(0)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53575022	53575022	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.R2450W	0.958	106	0%	55	30.9%	73	0%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53596580	53596580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.A2174T	1.000	430	0%	240	12.1%	35	48.5%	probably_damaging(0.978)	tolerated(1)	neutral(0.420)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53602139	53602139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.A2025T	0.287	85	0%	49	26.5%	28	0%	benign(0.002)	tolerated(1)	-	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53610721	53610721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.D1773Y	1.000	125	0%	72	31.9%	19	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53641672	53641672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.P695H	1.000	241	0.4%	136	26.5%	14	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF913
HUWE1	10075	genome.wustl.edu	37	X	53651562	53651562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.L556I	1.000	132	0%	82	24.4%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF913,superfamily_ARM repeat
HUWE1	10075	genome.wustl.edu	37	X	53674385	53674385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.L93F	1.000	391	0%	257	29.2%	13	0%	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	HMMPfam_DUF908
PHF8	23133	genome.wustl.edu	37	X	54028588	54028588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015107.2	-1	reviewed	p.G381R	1.000	197	0%	97	29.9%	27	0%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
FAM120C	54954	genome.wustl.edu	37	X	54114297	54114297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017848.4	-1	validated	p.P843H	1.000	155	0%	104	28.8%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
WNK3	65267	genome.wustl.edu	37	X	54224923	54224923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.A1746V	0.370	238	0%	136	33.1%	2	50%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
FGD1	2245	genome.wustl.edu	37	X	54472579	54472579	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004463.2	-1	reviewed	p.E950A	0.847	114	0%	61	14.8%	8	62.5%	unknown(0)	deleterious(0)	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54577464	54577464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019067.5	+1	reviewed	p.A282S	1.000	240	0.8%	130	28.5%	10	0%	benign(0.081)	tolerated(0.39)	neutral(0.022)	HMMPfam_MMR_HSR1,superfamily_SSF52540
ITIH6	347365	genome.wustl.edu	37	X	54783712	54783712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.T932N	0.000	230	0%	123	30.9%	0	-	benign(0.035)	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54784197	54784197	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.S770	0.000	484	0%	248	33.5%	0	-	-	-	-	NULL
ALAS2	212	genome.wustl.edu	37	X	55035647	55035647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000032.4	-1	reviewed	p.N577S	1.000	48	0%	37	40.5%	0	-	possibly_damaging(0.887)	tolerated(0.15)	deleterious(0.588)	NULL
ALAS2	212	genome.wustl.edu	37	X	55039945	55039945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000032.4	-1	reviewed	p.S525I	1.000	73	0%	54	14.8%	0	-	possibly_damaging(0.803)	deleterious(0.04)	deleterious(0.651)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
MAGEH1	28986	genome.wustl.edu	37	X	55479389	55479389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014061.3	+1	reviewed	p.N194K	0.007	129	0%	91	31.9%	6	0%	benign(0.023)	tolerated(0.29)	neutral(0.030)	NULL
USP51	158880	genome.wustl.edu	37	X	55514688	55514688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201286.3	-1	validated	p.R229C	1.000	174	0%	75	26.7%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
UBQLN2	29978	genome.wustl.edu	37	X	56591127	56591127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013444.3	+1	reviewed	p.D274A	1.000	150	0%	79	29.1%	37	97.2%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
FAAH2	158584	genome.wustl.edu	37	X	57407425	57407425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174912.3	+1	reviewed	p.S320F	0.966	477	0%	323	28.2%	8	75%	possibly_damaging(0.61)	deleterious(0)	deleterious(0.656)	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes
ARHGEF9	23229	genome.wustl.edu	37	X	62885777	62885777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015185.2	-1	reviewed	p.L349I	1.000	159	0%	91	20.9%	4	0%	benign(0.023)	tolerated(0.44)	neutral(0.014)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
ARHGEF9	23229	genome.wustl.edu	37	X	62944434	62944434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015185.2	-1	reviewed	p.W56L	1.000	266	0%	169	18.9%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
ASB12	142689	genome.wustl.edu	37	X	63445032	63445032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130388.2	-1	reviewed	p.V158I	1.000	327	0%	153	24.8%	3	33.3%	possibly_damaging(0.896)	tolerated(0.09)	deleterious(0.650)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ASB12	142689	genome.wustl.edu	37	X	63445393	63445393	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130388.2	-1	reviewed	p.N37	0.154	209	0%	132	35.6%	0	-	-	-	-	superfamily_ANK
MTMR8	55613	genome.wustl.edu	37	X	63576165	63576165	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017677.3	-1	reviewed	p.G67	0.976	112	0%	111	13.5%	1	0%	-	-	-	superfamily_PH domain-like
ZC4H2	55906	genome.wustl.edu	37	X	64138963	64138963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018684.2	-1	validated	p.R174W	0.977	124	0%	69	34.8%	9	88.8%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C4H2
ZC3H12B	340554	genome.wustl.edu	37	X	64717099	64717099	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.V221	1.000	167	0%	130	33.8%	0	-	-	-	-	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64719765	64719765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.F318C	1.000	781	0.1%	461	31.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64722360	64722360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.N583K	0.999	200	0.5%	108	22.2%	1	0%	benign(0.059)	deleterious(0.03)	neutral(0.368)	NULL
ZC3H12B	340554	genome.wustl.edu	37	X	64722506	64722506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010888.3	+1	reviewed	p.G632D	1.000	157	0%	69	14.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64744105	64744105	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.P377	0.211	107	0%	49	26.5%	58	0%	-	-	-	NULL
LAS1L	81887	genome.wustl.edu	37	X	64749610	64749610	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.D221	0.003	610	0%	266	29.3%	30	93.3%	-	-	-	NULL
MSN	4478	genome.wustl.edu	37	X	64951039	64951039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.R180C	1.000	55	0%	19	36.8%	26	3.8%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
MSN	4478	genome.wustl.edu	37	X	64951829	64951829	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.I227	1.000	318	0%	136	27.9%	41	0%	-	-	-	HMMPfam_FERM_C,superfamily_SSF50729
VSIG4	11326	genome.wustl.edu	37	X	65252405	65252405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007268.2	-1	reviewed	p.P200L	0.989	358	0%	264	11%	12	0%	benign(0.253)	tolerated(0.28)	neutral(0.057)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
VSIG4	11326	genome.wustl.edu	37	X	65253670	65253670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007268.2	-1	reviewed	p.R20C	0.000	246	0%	211	17.1%	12	0%	benign(0.188)	deleterious(0.02)	neutral(0.401)	HMMPfam_V-set,superfamily_Immunoglobulin
HEPH	9843	genome.wustl.edu	37	X	65392289	65392289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.T90I	0.000	302	0.3%	214	25.7%	1	0%	benign(0.051)	tolerated(0.07)	neutral(0.322)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65423305	65423305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.R729H	0.000	204	0%	173	17.9%	2	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65423311	65423311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.R731H	0.003	207	0%	177	29.9%	2	0%	benign(0.002)	tolerated(0.56)	neutral(0.006)	superfamily_Cupredoxins
HEPH	9843	genome.wustl.edu	37	X	65423368	65423368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.C750Y	1.000	223	0%	179	22.3%	6	0%	possibly_damaging(0.821)	deleterious(0.02)	deleterious(0.694)	superfamily_Cupredoxins
EDA2R	60401	genome.wustl.edu	37	X	65822579	65822579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021783.2	-1	reviewed	p.T138I	0.956	46	0%	23	43.5%	2	100%	benign(0.027)	tolerated(0.14)	neutral(0.251)	NULL
STARD8	9754	genome.wustl.edu	37	X	67867769	67867769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142503.2	+1	reviewed	p.K15N	1.000	15	0%	13	30.8%	0	-	possibly_damaging(0.815)	-	-	NULL
PJA1	64219	genome.wustl.edu	37	X	68382877	68382877	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145119.3	-1	reviewed	p.R69*	0.998	136	0%	87	26.4%	8	75%	-	-	-	NULL
EDA	1896	genome.wustl.edu	37	X	69247876	69247876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001399.4	+1	reviewed	p.Q232H	0.984	39	0%	21	28.6%	0	-	unknown(0)	deleterious(0.02)	-	NULL
AWAT2	158835	genome.wustl.edu	37	X	69261669	69261669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002254.1	-1	reviewed	p.E331K	0.902	166	0%	93	23.7%	0	-	benign(0)	tolerated(0.99)	-	HMMPfam_DAGAT
DGAT2L6	347516	genome.wustl.edu	37	X	69424179	69424179	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198512.1	+1	provisional	p.S224	1.000	89	0%	64	17.2%	0	-	-	-	-	HMMPfam_DAGAT
ARR3	407	genome.wustl.edu	37	X	69497577	69497577	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004312.2	+1	validated	p.H207	0.157	66	0%	41	26.8%	0	-	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
KIF4A	24137	genome.wustl.edu	37	X	69626742	69626742	+	Splice_Site	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	e27-1	1.000	157	0%	100	24%	0	-	-	-	-	-
FOXO4	4303	genome.wustl.edu	37	X	70320828	70320828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005938.3	+1	reviewed	p.A250T	0.925	85	0%	38	10.5%	17	11.7%	probably_damaging(0.983)	tolerated(0.32)	neutral(0.453)	NULL
MED12	9968	genome.wustl.edu	37	X	70357464	70357464	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444034	+1	known	p.P156H	0.974	91	0%	39	25.6%	27	85.1%	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70360644	70360644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.Q2068H	0.371	129	0%	81	34.6%	26	0%	unknown(0)	tolerated(0.24)	-	NULL
NLGN3	54413	genome.wustl.edu	37	X	70367768	70367768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.P57S	1.000	48	0%	31	38.7%	0	-	benign(0.146)	tolerated(0.11)	neutral(0.284)	HMMPfam_COesterase,superfamily_SSF53474
NLGN3	54413	genome.wustl.edu	37	X	70384180	70384180	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	e4+2	1.000	82	0%	44	45.5%	1	100%	-	-	-	-
ZMYM3	9203	genome.wustl.edu	37	X	70460861	70460861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005096.3	-1	reviewed	p.D1340N	1.000	281	0%	144	13.2%	63	0%	probably_damaging(0.959)	deleterious(0.05)	deleterious(0.748)	NULL
ZMYM3	9203	genome.wustl.edu	37	X	70469003	70469003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005096.3	-1	reviewed	p.Y496C	1.000	835	0%	363	25.1%	39	0%	probably_damaging(0.995)	tolerated(0.07)	deleterious(0.776)	HMMPfam_zf-FCS
RGAG4	340526	genome.wustl.edu	37	X	71350303	71350303	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024455.3	-1	validated	p.R363M	0.000	116	0%	48	25%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359718	71359718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.P408S	1.000	183	0%	105	28.6%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
NHSL2	340527	genome.wustl.edu	37	X	71360293	71360293	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.Q599	0.002	94	0%	55	25.5%	0	-	-	-	-	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71425166	71425166	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017669.2	-1	validated	p.L1151	0.000	533	0%	267	35.6%	9	0%	-	-	-	NULL
NAP1L2	4674	genome.wustl.edu	37	X	72433307	72433307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021963.2	-1	reviewed	p.V341A	1.000	586	0%	337	28.5%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_NAP
CDX4	1046	genome.wustl.edu	37	X	72673353	72673353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005193.1	+1	provisional	p.G168E	0.999	144	0%	91	27.5%	0	-	possibly_damaging(0.499)	deleterious(0.01)	deleterious(0.572)	HMMPfam_Caudal_act
CHIC1	53344	genome.wustl.edu	37	X	72797297	72797297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039840.2	+1	validated	p.K117N	1.000	381	0%	337	12.5%	7	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Erf4
ZCCHC13	389874	genome.wustl.edu	37	X	73524410	73524410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203303.2	+1	reviewed	p.D103E	0.226	210	0%	121	36.4%	0	-	possibly_damaging(0.812)	tolerated(0.14)	deleterious(0.555)	HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC,superfamily_SSF57756
KIAA2022	340533	genome.wustl.edu	37	X	73961969	73961969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.P808L	1.000	934	0%	636	15.4%	0	-	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73964123	73964123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008537.2	-1	validated	p.A90D	0.999	413	0%	284	27.8%	1	100%	benign(0.277)	deleterious(0.01)	neutral(0.435)	NULL
ABCB7	22	genome.wustl.edu	37	X	74334621	74334621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004299.3	-1	reviewed	p.G73C	0.042	95	0%	57	29.8%	8	0%	possibly_damaging(0.558)	deleterious(0.04)	deleterious(0.539)	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75003705	75003705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.E394D	0.053	482	0%	268	29.5%	0	-	benign(0)	tolerated(0.65)	neutral(0.003)	HMMPfam_MAGE
MAGEE1	57692	genome.wustl.edu	37	X	75648525	75648525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.V68I	0.024	16	0%	15	40%	2	0%	possibly_damaging(0.636)	deleterious(0.02)	deleterious(0.606)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649149	75649149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.A276T	0.000	38	0%	19	26.3%	0	-	possibly_damaging(0.86)	tolerated(0.43)	neutral(0.346)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75650085	75650085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.L588I	0.030	64	0%	31	22.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MAGE
MAGEE1	57692	genome.wustl.edu	37	X	75650882	75650882	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.R853S	0.010	90	0%	47	25.5%	0	-	probably_damaging(0.997)	tolerated(0.53)	deleterious(0.474)	HMMPfam_MAGE
MIR325	442899	genome.wustl.edu	37	X	76225862	76225862	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385260	-1	known	NULL	0.998	709	0.1%	410	24.6%	0	-	-	-	-	-
ATRX	546	genome.wustl.edu	37	X	76872183	76872183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.A1822T	1.000	297	0%	200	29.5%	26	0%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_SNF2_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76938631	76938631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.S706N	0.001	822	0.1%	592	12.8%	6	33.3%	possibly_damaging(0.704)	tolerated(0.07)	deleterious(0.573)	NULL
COX7B	1349	genome.wustl.edu	37	X	77155084	77155084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001866.2	+1	reviewed	p.L12I	0.978	101	0%	78	35.9%	376	87.5%	possibly_damaging(0.757)	tolerated(0.05)	deleterious(0.625)	HMMPfam_COX7B
ATP7A	538	genome.wustl.edu	37	X	77243856	77243856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.P80H	0.999	866	0.1%	575	24.2%	1	0%	possibly_damaging(0.949)	tolerated(0.07)	deleterious(0.712)	NULL
ATP7A	538	genome.wustl.edu	37	X	77245424	77245424	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.E436*	1.000	352	0.3%	224	24.1%	1	100%	-	-	-	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain
ATP7A	538	genome.wustl.edu	37	X	77294363	77294363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.L1181I	1.000	982	0.1%	683	12.4%	0	-	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
ATP7A	538	genome.wustl.edu	37	X	77301012	77301012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.S1390Y	1.000	885	0%	573	26.2%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PGK1	5230	genome.wustl.edu	37	X	77378836	77378836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000291.3	+1	reviewed	p.A301S	1.000	144	0%	109	12.8%	345	0%	benign(0.016)	tolerated(0.09)	neutral(0.297)	HMMPfam_PGK,superfamily_Phosphoglycerate kinase
TBX22	50945	genome.wustl.edu	37	X	79278611	79278611	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109878.1	+1	reviewed	p.S76	0.001	114	0%	58	25.9%	0	-	-	-	-	NULL
FAM46D	169966	genome.wustl.edu	37	X	79698692	79698692	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152630.4	+1	validated	p.L218	0.079	237	0%	177	28.2%	0	-	-	-	-	HMMPfam_DUF1693
FAM46D	169966	genome.wustl.edu	37	X	79698895	79698895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152630.4	+1	validated	p.N286S	0.999	322	0%	267	14.2%	0	-	probably_damaging(0.958)	tolerated(0.23)	neutral(0.443)	HMMPfam_DUF1693
BRWD3	254065	genome.wustl.edu	37	X	79948521	79948521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.A1061T	1.000	604	0%	378	24.9%	5	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79975093	79975093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.L647I	1.000	204	0%	125	28.8%	5	100%	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
POU3F4	5456	genome.wustl.edu	37	X	82763697	82763697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.P122L	1.000	79	0%	42	16.7%	0	-	benign(0)	tolerated(0.82)	neutral(0.001)	NULL
POU3F4	5456	genome.wustl.edu	37	X	82764363	82764363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.P344L	0.997	71	0%	48	29.2%	0	-	benign(0.02)	deleterious(0)	neutral(0.446)	superfamily_Homeodomain_like
CYLC1	1538	genome.wustl.edu	37	X	83127951	83127951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.H79Y	0.086	212	0%	174	26.4%	0	-	benign(0.018)	deleterious(0.04)	neutral(0.349)	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128850	83128850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021118.1	+1	provisional	p.K378N	0.003	298	0%	276	25.7%	0	-	unknown(0)	tolerated(0.34)	-	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83374939	83374939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014496.4	-1	reviewed	p.R248I	1.000	242	0%	178	32.6%	0	-	possibly_damaging(0.628)	deleterious(0.02)	deleterious(0.602)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HDX	139324	genome.wustl.edu	37	X	83616611	83616611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144657.4	-1	validated	p.R439C	1.000	124	0%	88	25%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
CHM	1121	genome.wustl.edu	37	X	85166340	85166340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000390.2	-1	reviewed	p.M390I	1.000	132	0%	113	34.5%	6	100%	possibly_damaging(0.604)	deleterious(0.03)	deleterious(0.574)	HMMPfam_GDI,superfamily_SSF51905
KLHL4	56062	genome.wustl.edu	37	X	86924371	86924371	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.L714	0.002	306	0%	254	28.7%	0	-	-	-	-	HMMSmart_SM00612
PABPC5	140886	genome.wustl.edu	37	X	90690622	90690622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080832.2	+1	reviewed	p.L16I	1.000	81	0%	62	24.2%	0	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
PABPC5	140886	genome.wustl.edu	37	X	90691296	90691296	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080832.2	+1	reviewed	p.G240	0.943	273	0%	111	28.8%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
PCDH11X	27328	genome.wustl.edu	37	X	91873396	91873396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.Q1167H	0.002	365	0.3%	175	34.3%	0	-	benign(0.267)	deleterious(0.01)	neutral(0.434)	NULL
RPA4	29935	genome.wustl.edu	37	X	96139732	96139732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013347.4	+1	reviewed	p.E141D	0.000	196	0%	130	23.8%	0	-	benign(0.177)	deleterious(0.01)	neutral(0.422)	HMMPfam_tRNA_anti,superfamily_Nucleic_acid_OB
RPA4	29935	genome.wustl.edu	37	X	96140003	96140003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013347.4	+1	reviewed	p.V232I	0.000	271	0%	147	10.2%	0	-	benign(0)	tolerated(0.41)	neutral(0.015)	HMMPfam_RPA_C,superfamily_SSF46785
DIAPH2	1730	genome.wustl.edu	37	X	96173602	96173602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006729.4	+1	reviewed	p.A322S	1.000	279	0.4%	204	32.8%	3	100%	unknown(0)	tolerated(0.78)	-	HMMPfam_Drf_FH3
PCDH19	57526	genome.wustl.edu	37	X	99662008	99662008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.E530K	1.000	109	0%	37	24.3%	11	0%	probably_damaging(0.973)	deleterious(0.05)	deleterious(0.760)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662372	99662372	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.D408	0.948	98	0%	31	19.4%	8	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDH19	57526	genome.wustl.edu	37	X	99662938	99662938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.G220C	1.000	64	1.6%	33	27.3%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SRPX2	27286	genome.wustl.edu	37	X	99919936	99919936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014467.2	+1	reviewed	p.P174H	1.000	57	0%	29	31%	6	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
SYTL4	94121	genome.wustl.edu	37	X	99942229	99942229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129896.2	-1	reviewed	p.S340N	1.000	265	0%	151	31.1%	7	0%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
NOX1	27035	genome.wustl.edu	37	X	100118517	100118517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.P70H	0.991	84	0%	47	14.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ferric_reduct
NOX1	27035	genome.wustl.edu	37	X	100125799	100125799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.V17A	0.623	394	0%	242	26.4%	0	-	benign(0.004)	tolerated(0.18)	neutral(0.056)	NULL
CENPI	2491	genome.wustl.edu	37	X	100403130	100403130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006733.2	+1	reviewed	p.A692T	0.287	482	0%	301	30.6%	5	100%	benign(0.033)	tolerated(0.1)	neutral(0.288)	NULL
DRP2	1821	genome.wustl.edu	37	X	100513425	100513425	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001939.2	+1	reviewed	p.R840S	0.830	22	0%	12	33.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BTK	695	genome.wustl.edu	37	X	100611138	100611138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.R490C	1.000	308	0.3%	157	35.7%	1	0%	possibly_damaging(0.455)	deleterious(0.04)	deleterious(0.498)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
BTK	695	genome.wustl.edu	37	X	100630137	100630137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000061.2	-1	reviewed	p.R46C	1.000	578	0%	386	29%	3	0%	unknown(0)	deleterious(0)	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
GLA	2717	genome.wustl.edu	37	X	100662783	100662783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000169.2	-1	reviewed	p.A37T	1.000	286	0%	179	22.3%	14	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_(Trans)glycosidases
GLA	2717	genome.wustl.edu	37	X	100662847	100662847	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000169.2	-1	reviewed	p.A15	0.000	220	0%	139	15.8%	26	0%	-	-	-	NULL
HNRNPH2	3188	genome.wustl.edu	37	X	100666987	100666987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032393.1	+1	reviewed	p.S4I	1.000	244	0.8%	118	11.9%	51	0%	benign(0.008)	deleterious(0.04)	neutral(0.349)	NULL
HNRNPH2	3188	genome.wustl.edu	37	X	100668191	100668191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032393.1	+1	reviewed	p.Q405H	0.993	765	0%	455	27.5%	115	1.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ARMCX6	54470	genome.wustl.edu	37	X	100871579	100871579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009584.1	-1	validated	p.A11V	0.961	232	0.4%	139	24.5%	21	0%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
ARMCX3	51566	genome.wustl.edu	37	X	100880541	100880541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016607.3	+1	reviewed	p.S191I	1.000	596	0%	335	23%	64	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF634,superfamily_ARM-type_fold
ARMCX2	9823	genome.wustl.edu	37	X	100911496	100911496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014782.5	-1	reviewed	p.R360H	0.546	323	0%	192	11.5%	11	18.1%	possibly_damaging(0.705)	tolerated(0.13)	deleterious(0.506)	superfamily_ARM-type_fold
NXF5	55998	genome.wustl.edu	37	X	101096244	101096244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032946.2	-1	reviewed	p.R127H	0.975	1537	0%	839	18.4%	1	0%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	superfamily_L domain-like
NXF5	55998	genome.wustl.edu	37	X	101096275	101096275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032946.2	-1	reviewed	p.S117P	1.000	1461	0%	764	19.4%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_L domain-like
NXF5	55998	genome.wustl.edu	37	X	101097758	101097758	+	Missense_Mutation	SNP	G	G	A	rs191549480	by1000genomes	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032946.2	-1	reviewed	p.R3W	0.000	866	0%	429	29.4%	0	-	benign(0.345)	-	-	superfamily_RNA-binding domain RBD
TCEAL2	140597	genome.wustl.edu	37	X	101382184	101382184	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080390.3	+1	reviewed	p.R128C	0.931	622	0.2%	305	33.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_TFA
NXF2	56001	genome.wustl.edu	37	X	101576775	101576775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017809.3	+1	reviewed	p.A424V	0.967	527	0%	232	11.6%	4	25%	benign(0.114)	deleterious(0.03)	neutral(0.373)	HMMPfam_NTF2,superfamily_SSF54427
ARMCX5	64860	genome.wustl.edu	37	X	101858297	101858297	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022838.3	+1	validated	p.Q410*	0.035	654	0.2%	502	16.3%	32	25%	-	-	-	HMMPfam_DUF634,superfamily_ARM repeat
GPRASP1	9737	genome.wustl.edu	37	X	101908967	101908967	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.T42	0.049	412	0.2%	228	34.2%	1	100%	-	-	-	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101909127	101909127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.A96T	0.011	537	0%	309	11%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101911770	101911770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.D977Y	0.209	691	0.3%	369	29%	1	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
GPRASP1	9737	genome.wustl.edu	37	X	101912185	101912185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.Y1115C	0.814	980	0%	539	26.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101969872	101969872	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.G25	0.135	248	0%	136	30.9%	3	100%	-	-	-	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101970083	101970083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.A96T	0.447	254	0%	135	31.1%	2	0%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
BHLHB9	80823	genome.wustl.edu	37	X	102004498	102004498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142524.1	+1	validated	p.P192H	0.984	1220	0.1%	667	13.6%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
BEX4	56271	genome.wustl.edu	37	X	102471152	102471152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080425.2	+1	validated	p.G24V	0.000	169	0%	90	18.9%	12	0%	unknown(0)	tolerated(0.29)	-	HMMPfam_BEX
MORF4L2	9643	genome.wustl.edu	37	X	102931114	102931114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142418.1	-1	validated	p.A281D	1.000	520	0%	285	17.2%	428	49%	possibly_damaging(0.658)	deleterious(0)	deleterious(0.677)	NULL
GLRA4	441509	genome.wustl.edu	37	X	102977097	102977097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024452.2	-1	validated	p.T234I	1.000	503	0.2%	240	30.4%	0	-	benign(0.422)	tolerated(0.12)	neutral(0.398)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
FAM199X	139231	genome.wustl.edu	37	X	103434400	103434400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207318.2	+1	validated	p.V370M	1.000	205	0%	134	29.1%	37	100%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	NULL
ESX1	80712	genome.wustl.edu	37	X	103495396	103495396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153448.3	-1	reviewed	p.P245H	0.034	282	0%	161	37.3%	0	-	unknown(0)	tolerated(0.23)	-	NULL
TEX13A	56157	genome.wustl.edu	37	X	104463857	104463857	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413579	-1	known	p.D340A	0.010	298	0%	146	28.8%	0	-	possibly_damaging(0.888)	tolerated(0.06)	deleterious(0.670)	NULL
NRK	203447	genome.wustl.edu	37	X	105150519	105150519	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.R320*	0.859	51	0%	43	23.3%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
NRK	203447	genome.wustl.edu	37	X	105153357	105153357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.A575V	0.863	63	0%	41	39%	0	-	benign(0.079)	tolerated(0.08)	neutral(0.305)	NULL
CXorf57	55086	genome.wustl.edu	37	X	105868322	105868322	+	Silent	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018015.5	+1	validated	p.T263	0.997	256	0%	160	28.1%	0	-	-	-	-	superfamily_Nucleic acid-binding proteins
TBC1D8B	54885	genome.wustl.edu	37	X	106046129	106046129	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017752.2	+1	validated	p.L16	1.000	151	0%	92	13%	1	0%	-	-	-	NULL
CLDN2	9075	genome.wustl.edu	37	X	106171619	106171619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020384.3	+1	reviewed	p.C54Y	1.000	526	0%	308	15.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN
TSC22D3	1831	genome.wustl.edu	37	X	106957873	106957873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198057.2	-1	reviewed	p.N160S	1.000	526	0.4%	271	13.7%	44	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSC22
MID2	11043	genome.wustl.edu	37	X	107159235	107159235	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.V359	0.993	661	0%	466	26.4%	10	0%	-	-	-	HMMSmart_SM00502
MID2	11043	genome.wustl.edu	37	X	107169520	107169520	+	Silent	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.G598	0.987	246	0%	166	25.3%	2	0%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
VSIG1	340547	genome.wustl.edu	37	X	107301303	107301303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182607.4	+1	reviewed	p.G29S	0.000	541	0%	422	10.4%	0	-	benign(0)	tolerated(0.85)	neutral(0.001)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ATG4A	115201	genome.wustl.edu	37	X	107381400	107381400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052936.2	+1	reviewed	p.Y265H	1.000	274	0%	153	31.4%	15	93.3%	benign(0.002)	tolerated(0.33)	neutral(0.024)	HMMPfam_Peptidase_C54
COL4A6	1288	genome.wustl.edu	37	X	107418365	107418365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.G972C	1.000	539	0.2%	310	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL4A6	1288	genome.wustl.edu	37	X	107431746	107431746	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	e21+1	1.000	171	0%	108	25%	0	-	-	-	-	-
ENSG00000189372	0	genome.wustl.edu	37	X	107627002	107627002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453808	+1	known	p.D86Y	0.024	65	0%	37	21.6%	0	-	benign(0.223)	tolerated(0.4)	neutral(0.038)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
COL4A5	1287	genome.wustl.edu	37	X	107811878	107811878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.G99V	1.000	350	0.3%	226	26.5%	2	0%	unknown(0)	deleterious(0)	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107834302	107834302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.G394S	1.000	396	0%	252	14.7%	2	100%	unknown(0)	deleterious(0)	-	NULL
COL4A5	1287	genome.wustl.edu	37	X	107858159	107858159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.G805E	1.000	196	0%	162	24.7%	11	90.9%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
IRS4	8471	genome.wustl.edu	37	X	107976063	107976063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.D1171G	0.000	122	0%	62	21%	0	-	benign(0.001)	tolerated(0.67)	neutral(0.003)	NULL
GUCY2F	2986	genome.wustl.edu	37	X	108628472	108628472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.R999I	1.000	242	0%	166	33.7%	0	-	possibly_damaging(0.538)	deleterious(0)	deleterious(0.627)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
RGAG1	57529	genome.wustl.edu	37	X	109696752	109696752	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.A969	0.712	805	0.1%	383	36%	0	-	-	-	-	NULL
CAPN6	827	genome.wustl.edu	37	X	110489870	110489870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.A621T	0.997	445	0%	300	29%	13	38.4%	benign(0.032)	tolerated(0.47)	neutral(0.012)	superfamily_C2_CaLB
CAPN6	827	genome.wustl.edu	37	X	110491855	110491855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.H476Y	1.000	246	0.4%	144	33.3%	7	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB
CAPN6	827	genome.wustl.edu	37	X	110494143	110494143	+	Splice_Site	SNP	A	A	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	e7+2	0.996	1478	0.1%	890	14.7%	0	-	-	-	-	-
DCX	1641	genome.wustl.edu	37	X	110574209	110574209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000555.2	-1	reviewed	p.P371H	0.987	608	0%	341	28.2%	0	-	benign(0.241)	tolerated(0.57)	neutral(0.030)	NULL
DCX	1641	genome.wustl.edu	37	X	110653394	110653394	+	Missense_Mutation	SNP	C	C	T	rs104894784	byCluster	TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000555.2	-1	reviewed	p.R159H	1.000	815	0%	663	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
ALG13	79868	genome.wustl.edu	37	X	111000880	111000880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.V1013A	0.191	212	0%	143	11.9%	6	33.3%	benign(0.003)	tolerated(0.61)	neutral(0.004)	NULL
AMOT	154796	genome.wustl.edu	37	X	112035161	112035161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113490.1	-1	reviewed	p.A609T	1.000	591	0%	349	25.8%	10	0%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
IL13RA2	3598	genome.wustl.edu	37	X	114239852	114239852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000640.2	-1	reviewed	p.L342I	0.000	286	0%	178	28.7%	0	-	possibly_damaging(0.626)	tolerated(0.55)	neutral(0.225)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114361449	114361449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.S583I	1.000	28	0%	20	20%	1	0%	benign(0.411)	deleterious(0.01)	deleterious(0.538)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114419069	114419069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.L176I	0.987	89	0%	54	25.9%	0	-	probably_damaging(0.998)	tolerated(0.7)	deleterious(0.476)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
RBMXL3	139804	genome.wustl.edu	37	X	114424064	114424064	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.D20	0.890	14	0.000	7	0.571	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
LUZP4	51213	genome.wustl.edu	37	X	114540795	114540795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.A123V	0.003	450	0%	236	28.4%	0	-	benign(0.205)	tolerated(0.09)	neutral(0.317)	NULL
PLS3	5358	genome.wustl.edu	37	X	114863565	114863565	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136025.3	+1	reviewed	p.N98T	1.000	247	0%	169	10.7%	61	24.5%	benign(0)	tolerated(0.4)	neutral(0.016)	superfamily_EF-hand
AGTR2	186	genome.wustl.edu	37	X	115304372	115304372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000686.4	+1	reviewed	p.A280V	1.000	421	0.2%	273	28.9%	0	-	benign(0.018)	tolerated(1)	neutral(0.001)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC653155	653155	genome.wustl.edu	37	X	115882567	115882567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_926254.3	-1	model	p.M89I	1.000	211	0%	123	26%	1	0%	-	-	-	HMMPfam_Pkinase
WDR44	54521	genome.wustl.edu	37	X	117566793	117566793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.R596Q	1.000	911	0.1%	589	10.7%	14	0%	probably_damaging(0.987)	tolerated(0.17)	deleterious(0.495)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR44	54521	genome.wustl.edu	37	X	117577542	117577542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.V802I	1.000	509	0%	323	28.8%	11	81.8%	possibly_damaging(0.652)	tolerated(1)	neutral(0.229)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DOCK11	139818	genome.wustl.edu	37	X	117762164	117762164	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.E1235*	1.000	281	0%	147	34%	2	0%	-	-	-	NULL
ENSG00000223499	0	genome.wustl.edu	37	X	118207880	118207880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419982	+1	known	p.A198V	0.000	187	0%	100	11%	0	-	-	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118230567	118230567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.P386S	0.000	222	0.5%	130	26.9%	0	-	probably_damaging(0.958)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118243137	118243137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.L227I	0.009	81	0%	59	20.3%	0	-	benign(0.388)	-	-	NULL
KIAA1210	57481	genome.wustl.edu	37	X	118284525	118284525	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020721.1	-1	validated	p.T6	0.000	113	0.9%	58	43.1%	0	-	-	-	-	NULL
PGRMC1	10857	genome.wustl.edu	37	X	118370488	118370488	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006667.3	+1	reviewed	p.S54	0.023	36	0%	13	30.8%	56	0%	-	-	-	NULL
NKRF	55922	genome.wustl.edu	37	X	118724559	118724559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.R277C	0.905	295	0%	152	29.6%	14	0%	possibly_damaging(0.848)	deleterious(0.03)	deleterious(0.690)	superfamily_dsRNA-binding domain-like
UPF3B	65109	genome.wustl.edu	37	X	118971927	118971927	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.R365	0.887	599	0%	399	26.8%	9	0%	-	-	-	NULL
UPF3B	65109	genome.wustl.edu	37	X	118972370	118972370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.K323E	0.999	448	0%	234	15%	10	0%	possibly_damaging(0.875)	tolerated(0.54)	neutral(0.348)	NULL
AKAP14	158798	genome.wustl.edu	37	X	119054507	119054507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178813.5	+1	reviewed	p.K177N	0.112	279	0%	172	21.5%	1	0%	benign(0.304)	-	-	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119387829	119387829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.D187N	1.000	203	0%	132	21.2%	12	0%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	NULL
ZBTB33	10009	genome.wustl.edu	37	X	119388330	119388330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006777.3	+1	reviewed	p.S354P	1.000	331	0%	190	29.5%	16	0%	benign(0.008)	tolerated(0.53)	neutral(0.007)	NULL
MCTS1	28985	genome.wustl.edu	37	X	119742128	119742128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137554.1	+1	validated	p.F105S	1.000	264	0%	173	10.4%	126	0.7%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_PUA,HMMSmart_PUA,superfamily_PUA-like
CT47B1	643311	genome.wustl.edu	37	X	120008939	120008939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.V196I	0.000	96	0%	50	30%	0	-	possibly_damaging(0.792)	tolerated(0.53)	neutral(0.304)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122538763	122538763	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264357	+1	known	p.G500W	1.000	574	0.2%	436	14.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
MIR220A	407005	genome.wustl.edu	37	X	122695977	122695977	+	RNA	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384922	-1	known	NULL	1.000	269	0.4%	141	29.8%	0	-	-	-	-	-
THOC2	57187	genome.wustl.edu	37	X	122801066	122801066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.A361T	1.000	712	0%	407	28.7%	20	0%	possibly_damaging(0.54)	deleterious(0)	deleterious(0.627)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123554247	123554247	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.G1625	0.989	174	0%	127	26.8%	0	-	-	-	-	superfamily_N2O_reductase_N
ODZ1	10178	genome.wustl.edu	37	X	123587214	123587214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.S1352R	1.000	421	0%	263	27.4%	0	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_SSF101898
ODZ1	10178	genome.wustl.edu	37	X	123654410	123654410	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.T1086	0.017	589	0.2%	482	10.6%	0	-	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	124028159	124028159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.A174D	1.000	390	0%	288	22.2%	0	-	benign(0.025)	tolerated(0.28)	neutral(0.033)	HMMPfam_Ten_N
DCAF12L2	340578	genome.wustl.edu	37	X	125299121	125299121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013628.2	-1	reviewed	p.R263C	0.435	84	0%	41	29.3%	0	-	benign(0.017)	tolerated(0.08)	neutral(0.300)	HMMSmart_WD40,superfamily_WD40_like
DCAF12L2	340578	genome.wustl.edu	37	X	125299241	125299241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013628.2	-1	reviewed	p.D223N	0.188	53	0%	26	19.2%	0	-	probably_damaging(0.998)	tolerated(0.61)	deleterious(0.478)	superfamily_WD40_like
OCRL	4952	genome.wustl.edu	37	X	128695246	128695246	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000276.3	+1	reviewed	p.L305	0.999	441	0.2%	256	25%	11	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
XPNPEP2	7512	genome.wustl.edu	37	X	128902374	128902374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003399.5	+1	reviewed	p.E646D	0.988	84	0%	47	19.1%	1	0%	probably_damaging(0.964)	tolerated(0.13)	deleterious(0.659)	NULL
BCORL1	63035	genome.wustl.edu	37	X	129147217	129147217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.A157T	0.042	416	0%	186	29%	0	-	unknown(0)	deleterious(0)	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129150146	129150146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.Q1133R	0.001	41	0%	11	54.5%	0	-	benign(0.069)	deleterious(0)	neutral(0.449)	NULL
SLC25A14	9016	genome.wustl.edu	37	X	129479166	129479166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003951.2	+1	reviewed	p.S29N	0.992	382	0%	254	27.2%	4	0%	benign(0.025)	deleterious(0.03)	neutral(0.365)	NULL
ENOX2	10495	genome.wustl.edu	37	X	129771232	129771232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182314.1	-1	reviewed	p.L457M	1.000	663	0.2%	404	25%	10	80%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130220541	130220541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144967.3	+1	validated	p.R463H	0.012	590	0%	290	27.6%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130408127	130408127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.V1269M	0.992	988	0.2%	488	29.5%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130412499	130412499	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.H659Q	1.000	296	0%	134	11.2%	0	-	probably_damaging(0.991)	tolerated(0.36)	neutral(0.464)	superfamily_Immunoglobulin
OR13H1	347468	genome.wustl.edu	37	X	130678059	130678059	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004486.1	+1	provisional	p.D4	0.000	1097	0%	752	26.7%	0	-	-	-	-	superfamily_SSF81321
FRMD7	90167	genome.wustl.edu	37	X	131219674	131219674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194277.2	-1	reviewed	p.A194T	1.000	404	0%	294	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF50729
RAP2C	57826	genome.wustl.edu	37	X	131348373	131348373	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021183.3	-1	provisional	p.E125D	1.000	208	0%	111	18.9%	20	0%	possibly_damaging(0.906)	tolerated(0.32)	neutral(0.384)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MBNL3	55796	genome.wustl.edu	37	X	131524953	131524953	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018388.3	-1	reviewed	p.Y231	1.000	307	0%	278	27%	11	0%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
HS6ST2	90161	genome.wustl.edu	37	X	131763060	131763060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.H377Y	1.000	83	0%	62	30.6%	11	0%	probably_damaging(0.993)	deleterious(0.04)	deleterious(0.799)	HMMPfam_HS6ST
HS6ST2	90161	genome.wustl.edu	37	X	132091281	132091281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.V168I	1.000	60	0%	35	40%	9	0%	probably_damaging(0.988)	tolerated(0.21)	deleterious(0.481)	NULL
TFDP3	51270	genome.wustl.edu	37	X	132351801	132351801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016521.2	-1	reviewed	p.R163C	1.000	244	0%	110	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
MIR20B	574032	genome.wustl.edu	37	X	133303895	133303895	+	RNA	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384977	-1	known	NULL	1.000	631	0%	386	30.8%	0	-	-	-	-	-
CCDC160	347475	genome.wustl.edu	37	X	133379394	133379394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101357.1	+1	provisional	p.N188K	0.000	93	0%	62	19.4%	20	65%	benign(0)	tolerated(1)	-	NULL
MOSPD1	56180	genome.wustl.edu	37	X	134030821	134030821	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428384	-1	known	p.P158	0.000	220	0%	128	24.2%	1	0%	-	-	-	NULL
ZNF75D	7626	genome.wustl.edu	37	X	134421137	134421137	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007131.3	-1	reviewed	p.R489*	0.000	524	0%	322	13.4%	9	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF75D	7626	genome.wustl.edu	37	X	134427911	134427911	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007131.3	-1	reviewed	p.F52	0.044	406	0%	220	27.7%	6	0%	-	-	-	HMMPfam_SCAN,HMMSmart_SCAN
DDX26B	203522	genome.wustl.edu	37	X	134680807	134680807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.G204*	1.000	421	0%	284	27.5%	1	0%	-	-	-	superfamily_vWA-like
DDX26B	203522	genome.wustl.edu	37	X	134680810	134680810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.G205C	1.000	408	0.2%	276	27.9%	1	100%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_vWA-like
DDX26B	203522	genome.wustl.edu	37	X	134706843	134706843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.T464I	1.000	281	0%	186	32.3%	5	0%	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
DDX26B	203522	genome.wustl.edu	37	X	134709041	134709041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.G555S	1.000	651	0.3%	389	24.7%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LOC644717	644717	genome.wustl.edu	37	X	134772388	134772388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343850.1	-1	model	p.N936D	0.005	282	0%	214	30.8%	0	-	-	-	-	NULL
LOC644717	644717	genome.wustl.edu	37	X	134773110	134773110	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343850.1	-1	model	p.R912	0.027	402	0%	290	21%	0	-	-	-	-	NULL
GPR112	139378	genome.wustl.edu	37	X	135429092	135429092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.V1076A	0.000	2529	0%	2044	29.5%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	NULL
GPR112	139378	genome.wustl.edu	37	X	135429816	135429816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.E1317D	0.032	1012	0%	788	31.3%	0	-	benign(0.059)	tolerated(0.77)	neutral(0.005)	NULL
GPR112	139378	genome.wustl.edu	37	X	135432343	135432343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.P2160T	0.032	470	0%	383	26.1%	0	-	benign(0.231)	deleterious(0.02)	neutral(0.406)	NULL
BRS3	680	genome.wustl.edu	37	X	135574251	135574251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001727.1	+1	validated	p.A306D	0.562	498	0%	287	31%	1	100%	benign(0)	tolerated(0.64)	neutral(0.003)	HMMPfam_7tm_1,superfamily_SSF81321
VGLL1	51442	genome.wustl.edu	37	X	135631044	135631044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016267.3	+1	reviewed	p.L171F	0.008	449	0%	272	32.4%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135764992	135764992	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.E468	1.000	289	0%	176	30.7%	4	25%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GPR101	83550	genome.wustl.edu	37	X	136113459	136113459	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054021.1	-1	validated	p.V125	1.000	95	0%	40	27.5%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
SNURFL	727686	genome.wustl.edu	37	X	138444268	138444268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416227	+1	known	p.A4T	0.000	72	0%	55	12.7%	0	-	possibly_damaging(0.722)	deleterious(0.02)	deleterious(0.645)	HMMPfam_SNURF
SNURFL	727686	genome.wustl.edu	37	X	138444480	138444480	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416227	+1	known	p.Y74	0.000	76	0%	56	28.6%	0	-	-	-	-	NULL
MCF2	4168	genome.wustl.edu	37	X	138679690	138679690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	p.L722I	0.939	459	0%	403	26.1%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
MCF2	4168	genome.wustl.edu	37	X	138699864	138699864	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099855.1	-1	reviewed	e10-1	1.000	741	0.1%	670	28.2%	0	-	-	-	-	-
LDOC1	23641	genome.wustl.edu	37	X	140271141	140271141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012317.2	-1	reviewed	p.E22D	1.000	65	0%	32	31.2%	36	0%	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140953353	140953353	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.R74*	0.000	477	0%	247	26.3%	0	-	-	-	-	NULL
MAGEC3	139081	genome.wustl.edu	37	X	140969479	140969479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138702.1	+1	reviewed	p.G269D	0.000	543	0%	284	20.1%	0	-	unknown(0)	tolerated(0.26)	-	HMMPfam_MAGE
MAGEC1	9947	genome.wustl.edu	37	X	140996048	140996048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005462.4	+1	reviewed	p.A953D	0.006	461	0.2%	247	33.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
MAGEC2	51438	genome.wustl.edu	37	X	141291306	141291306	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016249.3	-1	reviewed	p.Y156	0.000	1046	0%	543	27.8%	0	-	-	-	-	HMMPfam_MAGE
SLITRK4	139065	genome.wustl.edu	37	X	142716718	142716718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173078.3	-1	reviewed	p.T736N	1.000	349	0.3%	197	26.4%	4	100%	benign(0.006)	tolerated(0.12)	neutral(0.261)	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142717981	142717981	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173078.3	-1	reviewed	p.I315S	0.995	261	0%	146	27.4%	0	-	possibly_damaging(0.553)	tolerated(0.15)	neutral(0.429)	superfamily_L domain-like
SPANXN2	494119	genome.wustl.edu	37	X	142795277	142795277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009615.1	-1	provisional	p.S134Y	0.000	4759	0.1%	3052	18.9%	0	-	unknown(0)	deleterious(0.01)	-	NULL
SPANXN2	494119	genome.wustl.edu	37	X	142795594	142795594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009615.1	-1	provisional	p.Q28H	0.001	1096	0.4%	627	29.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_SPAN-X
SPANXN2	494119	genome.wustl.edu	37	X	142803719	142803719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009615.1	-1	provisional	p.S15I	0.000	260	0%	152	25%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_SPAN-X
SLITRK2	84631	genome.wustl.edu	37	X	144904871	144904871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.R310C	0.996	163	0%	90	27.8%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144906317	144906317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.R792C	1.000	304	0.3%	148	30.4%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
ENSG00000252219	0	genome.wustl.edu	37	X	145074305	145074305	+	RNA	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000516410	-1	novel	NULL	0.000	281	0%	131	35.1%	0	-	-	-	-	-
MIR514A1	574516	genome.wustl.edu	37	X	146360856	146360856	+	RNA	SNP	A	A	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385133	-1	known	NULL	0.001	134	0%	81	38.3%	0	-	-	-	-	-
AFF2	2334	genome.wustl.edu	37	X	147743706	147743706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.R153I	1.000	1244	0.1%	698	12.8%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	147967484	147967484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002025.3	+1	reviewed	p.T443I	0.994	589	0%	388	29.4%	2	0%	benign(0.259)	tolerated(0.39)	neutral(0.043)	HMMPfam_AF-4
TMEM185A	84548	genome.wustl.edu	37	X	148690441	148690441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032508.2	-1	reviewed	p.V97A	1.000	386	0%	264	36.7%	26	80.7%	benign(0.385)	deleterious(0.01)	deleterious(0.528)	HMMPfam_Tmemb_185A
TMEM185A	84548	genome.wustl.edu	37	X	148693025	148693025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032508.2	-1	reviewed	p.V52I	1.000	559	0%	363	30.9%	17	0%	benign(0.366)	deleterious(0.04)	neutral(0.465)	HMMPfam_Tmemb_185A
MAGEA11	4110	genome.wustl.edu	37	X	148797885	148797885	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005366.4	+1	reviewed	p.E247*	0.035	500	0.2%	248	33.5%	1	0%	-	-	-	HMMPfam_MAGE
MAMLD1	10046	genome.wustl.edu	37	X	149639740	149639740	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005491.3	+1	reviewed	p.S632Y	0.051	226	0%	95	31.6%	1	0%	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	NULL
MTM1	4534	genome.wustl.edu	37	X	149807440	149807440	+	Nonsense_Mutation	SNP	G	G	T	rs132630307		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.E157*	1.000	882	0%	632	29.4%	6	0%	-	-	-	superfamily_SSF52799
MTM1	4534	genome.wustl.edu	37	X	149839964	149839964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.R570W	1.000	131	0%	99	12.1%	6	16.6%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
MTMR1	8776	genome.wustl.edu	37	X	149901188	149901188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003828.2	+1	reviewed	p.A348T	1.000	232	0%	125	20.8%	17	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myotub-related,superfamily_(Phosphotyrosine protein) phosphatases II
GPR50	9248	genome.wustl.edu	37	X	150349681	150349681	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004224.3	+1	reviewed	p.S542	0.006	521	0%	282	28.4%	0	-	-	-	-	PatternScan_TRYPSIN_HIS
PRRG3	79057	genome.wustl.edu	37	X	150869125	150869125	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024082.3	+1	validated	p.Q106*	1.000	345	0%	157	14.6%	0	-	-	-	-	NULL
FATE1	89885	genome.wustl.edu	37	X	150889958	150889958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033085.2	+1	reviewed	p.R109H	0.000	98	0%	43	25.6%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
MIR452	574412	genome.wustl.edu	37	X	151128149	151128149	+	RNA	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385020	-1	known	NULL	1.000	289	0%	162	31.5%	0	-	-	-	-	-
GABRE	2564	genome.wustl.edu	37	X	151138727	151138727	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004961.3	-1	reviewed	p.L68	0.004	444	0.2%	237	31.2%	0	-	-	-	-	NULL
MAGEA10	4109	genome.wustl.edu	37	X	151303420	151303420	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011543.1	-1	reviewed	p.G225C	0.000	243	0%	135	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAGE
GABRQ	55879	genome.wustl.edu	37	X	151815615	151815615	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.V171	0.683	161	0%	79	22.8%	0	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRQ	55879	genome.wustl.edu	37	X	151817795	151817795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.S203R	1.000	270	0%	139	33.8%	0	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
GABRQ	55879	genome.wustl.edu	37	X	151821092	151821092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.S416Y	0.021	199	0%	121	35.5%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GABRQ	55879	genome.wustl.edu	37	X	151821372	151821372	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018558.2	+1	reviewed	p.R509	0.002	172	0%	89	19.1%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
LOC100130935	100130935	genome.wustl.edu	37	X	151896333	151896333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001721280.1	-1	model	p.G94R	0.000	273	0%	134	32.1%	0	-	-	-	-	NULL
NSDHL	50814	genome.wustl.edu	37	X	152031181	152031181	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129765.1	+1	reviewed	p.G152	0.000	280	0%	134	25.4%	56	85.7%	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
ZNF185	7739	genome.wustl.edu	37	X	152139048	152139048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007150.3	+1	reviewed	p.T678I	0.987	378	0%	167	28.1%	0	-	possibly_damaging(0.64)	tolerated(0.15)	neutral(0.465)	HMMPfam_LIM,HMMSmart_SM00132
PNMA3	29944	genome.wustl.edu	37	X	152226036	152226036	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013364.4	+1	reviewed	p.C208	0.004	104	0%	31	35.5%	1	0%	-	-	-	NULL
MAGEA1	4100	genome.wustl.edu	37	X	152482345	152482345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004988.4	-1	reviewed	p.E222D	0.000	296	0%	126	27.8%	0	-	benign(0.006)	tolerated(0.2)	neutral(0.049)	HMMPfam_MAGE
ABCD1	215	genome.wustl.edu	37	X	153001834	153001834	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443684	+1	known	p.T88M	0.002	31	0%	10	40%	5	20%	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153128132	153128132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.V1254M	0.005	54	0%	16	43.8%	0	-	benign(0.066)	tolerated(0.06)	neutral(0.327)	NULL
L1CAM	3897	genome.wustl.edu	37	X	153130062	153130062	+	Silent	SNP	A	A	G	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.H1048	0.810	141	0%	40	20%	0	-	-	-	-	superfamily_Fibronectin type III
RENBP	5973	genome.wustl.edu	37	X	153205592	153205592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002910.5	-1	reviewed	p.R347H	0.000	48	0%	21	28.6%	9	0%	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim
HCFC1	3054	genome.wustl.edu	37	X	153217059	153217059	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444191	-1	known	p.W362*	1.000	22	0%	11	54.5%	66	6%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
TMEM187	8269	genome.wustl.edu	37	X	153247676	153247676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003492.2	+1	reviewed	p.P55S	1.000	64	0%	41	12.2%	24	4.1%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
MECP2	4204	genome.wustl.edu	37	X	153296265	153296265	+	Silent	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110792.1	-1	reviewed	p.T350	0.994	106	0%	68	32.4%	27	0%	-	-	-	NULL
MECP2	4204	genome.wustl.edu	37	X	153297985	153297985	+	Splice_Site	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427441	-1	known	e2+2	0.997	157	0%	83	15.7%	11	54.5%	probably_damaging(0.988)	tolerated(0.17)	deleterious(0.496)	-
OPN1MW	2652	genome.wustl.edu	37	X	153458963	153458963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000513.2	+1	reviewed	p.V270A	1.000	239	0%	81	39.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OPN1MW2	728458	genome.wustl.edu	37	X	153496124	153496124	+	Silent	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048181.2	+1	reviewed	p.Y284	0.843	242	0%	129	55.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FLNA	2316	genome.wustl.edu	37	X	153580767	153580767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.K2184R	0.954	42	2.4%	13	46.2%	211	0%	benign(0.001)	tolerated(0.83)	neutral(0.001)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FLNA	2316	genome.wustl.edu	37	X	153590636	153590636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110556.1	-1	reviewed	p.A877V	1.000	23	0%	11	45.5%	81	0%	benign(0.033)	tolerated(0.35)	neutral(0.022)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ATP6AP1	537	genome.wustl.edu	37	X	153663812	153663812	+	Silent	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001183.4	+1	reviewed	p.T388	0.000	86	0%	44	15.9%	369	42%	-	-	-	HMMPfam_ATP-synt_S1
ATP6AP1	537	genome.wustl.edu	37	X	153664154	153664154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001183.4	+1	reviewed	p.L444M	1.000	282	0%	139	23.7%	381	0%	possibly_damaging(0.829)	deleterious(0.01)	deleterious(0.720)	HMMPfam_ATP-synt_S1
PLXNA3	55558	genome.wustl.edu	37	X	153695648	153695648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.R1092Q	0.000	14	0.000	9	0.444	20	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
PLXNA3	55558	genome.wustl.edu	37	X	153699880	153699880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.D1807N	1.000	44	0%	20	40%	19	89.4%	possibly_damaging(0.858)	tolerated(1)	neutral(0.331)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
G6PD	2539	genome.wustl.edu	37	X	153760976	153760976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000402.3	-1	reviewed	p.R395C	1.000	55	0%	25	28%	45	68.8%	possibly_damaging(0.844)	deleterious(0.02)	deleterious(0.707)	HMMPfam_G6PD_C,superfamily_SSF55347
G6PD	2539	genome.wustl.edu	37	X	153762623	153762623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000402.3	-1	reviewed	p.R222C	0.584	59	0%	30	43.3%	56	0%	benign(0.208)	deleterious(0.01)	neutral(0.426)	HMMPfam_G6PD_N,superfamily_NAD(P)-bd
CTAG2	30848	genome.wustl.edu	37	X	153880742	153880742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020994.3	-1	reviewed	p.A145T	0.000	47	0%	22	22.7%	0	-	unknown(0)	deleterious(0)	-	NULL
MPP1	4354	genome.wustl.edu	37	X	154007495	154007495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002436.3	-1	reviewed	p.A453V	0.990	245	0.4%	132	25.8%	13	0%	probably_damaging(0.999)	tolerated(0.45)	deleterious(0.502)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
MPP1	4354	genome.wustl.edu	37	X	154009925	154009925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002436.3	-1	reviewed	p.H367Y	1.000	771	0%	405	24.7%	16	0%	possibly_damaging(0.626)	deleterious(0)	deleterious(0.662)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000157576	0	genome.wustl.edu	37	X	154045595	154045595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378969	-1	known	p.P28S	0.918	124	0%	52	32.7%	0	-	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527,PatternScan_HMG14_17
F8	2157	genome.wustl.edu	37	X	154128200	154128200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.L2072F	1.000	172	0%	124	28.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
F8	2157	genome.wustl.edu	37	X	154159445	154159445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.L874I	0.003	426	0.2%	290	26.2%	1	100%	probably_damaging(0.99)	tolerated(0.08)	deleterious(0.742)	NULL
F8	2157	genome.wustl.edu	37	X	154176099	154176099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.A663S	1.000	521	0.2%	323	29.4%	0	-	probably_damaging(0.998)	tolerated(0.27)	deleterious(0.508)	superfamily_Cupredoxins
F8	2157	genome.wustl.edu	37	X	154221319	154221319	+	Missense_Mutation	SNP	G	G	A	rs137852393		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.P165S	0.997	806	0%	446	14.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins
IL9R	3581	genome.wustl.edu	37	X	155233396	155233396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A051-01A-21W-A027-09	TCGA-AP-A051-10A-01W-A027-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369423	+1	known	p.P148L	0.058	58	0%	24	41.7%	1	0%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
