Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AARS	16	genome.wustl.edu	37	16	70296374	70296374	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70296374	70296374	C	A	SNP	AARS	NM_001605	human	genbank	57_37b	-1	reviewed	missense	c.1546	p.V516L	0.999	HMMPfam_tRNA-synt_2c	superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,HMMPfam_DHHA1	-	no_errors
ACCN5	51802	genome.wustl.edu	37	4	156764876	156764876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	156764876	156764876	G	A	SNP	ACCN5	NM_017419	human	genbank	57_37b	-1	reviewed	missense	c.818	p.S273L	0.267	HMMPfam_ASC	PatternScan_ASC,HMMPfam_ASC	-	no_errors
ADAM33	80332	genome.wustl.edu	37	20	3649962	3649962	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3649962	3649962	G	C	SNP	ADAM33	NM_025220	human	genbank	57_37b	-1	reviewed	silent	c.2388	p.V796	0.009	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
AKR1C3	8644	genome.wustl.edu	37	10	5141532	5141532	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5141532	5141532	G	T	SNP	AKR1C3	NM_003739	human	genbank	57_37b	+1	reviewed	missense	c.461	p.C154F	0.999	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_2	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
ALDH9A1	223	genome.wustl.edu	37	1	165667781	165667781	+	Silent	SNP	T	G	G	rs12408101	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165667781	165667781	T	G	SNP	ALDH9A1	NM_000696	human	genbank	57_37b	-1	reviewed	silent	c.15	p.A5	0.000	NULL	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	
AMPD1	270	genome.wustl.edu	37	1	115236070	115236070	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115236070	115236070	T	A	SNP	AMPD1	NM_000036	human	genbank	57_37b	-1	reviewed	splice_site	c.23-2	e2-2	1.000	-	-	-	no_errors
ARHGAP29	9411	genome.wustl.edu	37	1	94639535	94639535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94639535	94639535	C	A	SNP	ARHGAP29	NM_004815	human	genbank	57_37b	-1	validated	missense	c.3676	p.D1226Y	0.002	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ASH1L	55870	genome.wustl.edu	37	1	155313175	155313175	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155313175	155313175	G	A	SNP	ASH1L	NM_018489	human	genbank	57_37b	-1	reviewed	silent	c.8223	p.L2741	0.818	HMMPfam_BAH,HMMSmart_SM00439	HMMSmart_SM00384,HMMPfam_AT_hook,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
BMP2	650	genome.wustl.edu	37	20	6751034	6751034	+	Silent	SNP	A	A	G	rs1049007	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	6751034	6751034	A	G	SNP	BMP2	NM_001200	human	genbank	57_37b	+1	reviewed	silent	c.261	p.S87	0.895	HMMPfam_TGFb_propeptide	HMMPfam_TGFb_propeptide,superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	
C8orf31	286122	genome.wustl.edu	37	8	144126108	144126108	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144126108	144126108	G	C	SNP	C8orf31	NM_173687	human	genbank	57_37b	+1	predicted	missense	c.229	p.D77H	0.000	NULL	NULL	-	no_errors
C8orf73	642475	genome.wustl.edu	37	8	144654693	144654693	+	Silent	SNP	G	G	C	rs4873804	byCluster;by2Hit2Allele;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144654693	144654693	G	C	SNP	C8orf73	NM_001100878	human	genbank	57_37b	-1	validated	silent	c.192	p.P64	0.000	NULL	superfamily_ARM-type_fold	-	
CACNA1B	774	genome.wustl.edu	37	9	140970313	140970313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140970313	140970313	C	T	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	missense	c.4900	p.R1634C	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CDCA2	157313	genome.wustl.edu	37	8	25365051	25365051	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25365051	25365051	C	G	SNP	CDCA2	NM_152562	human	genbank	57_37b	+1	validated	missense	c.2869	p.P957A	0.000	NULL	NULL	-	no_errors
CDKL5	6792	genome.wustl.edu	37	X	18631363	18631363	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18631363	18631363	C	A	SNP	CDKL5	NM_001037343	human	genbank	57_37b	+1	reviewed	missense	c.2244	p.N748K	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CENPE	1062	genome.wustl.edu	37	4	104098112	104098112	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104098112	104098112	T	G	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.1334	p.N445T	0.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
CENPO	79172	genome.wustl.edu	37	2	25040582	25040582	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25040582	25040582	T	A	SNP	CENPO	NM_024322	human	genbank	57_37b	+1	provisional	silent	c.810	p.S270	0.397	NULL	HMMPfam_Cenp-O	-	no_errors
CHD9	80205	genome.wustl.edu	37	16	53338403	53338403	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	53338403	53338403	G	C	SNP	CHD9	NM_025134	human	genbank	57_37b	+1	validated	missense	c.6485	p.G2162A	1.000	NULL	superfamily_Chromodomain-like,HMMSmart_CHROMO,HMMPfam_Chromo,superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_BRK	-	no_errors
COL29A1	256076	genome.wustl.edu	37	3	130098667	130098667	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130098667	130098667	G	A	SNP	COL29A1	NM_153264	human	genbank	57_37b	+1	validated	silent	c.1074	p.A358	0.000	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors
DCHS2	54798	genome.wustl.edu	37	4	155287566	155287566	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155287566	155287566	G	-	DEL	DCHS2	NM_017639	human	genbank	57_37b	-1	validated	frame_shift_del	c.490	p.R164fs	1.000	superfamily_Cadherin-like,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	(deletion:cds_exon[155287362,155287593])	no_errors
EPS8L1	54869	genome.wustl.edu	37	19	55598724	55598724	+	Missense_Mutation	SNP	A	A	G	rs1054940	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55598724	55598724	A	G	SNP	EPS8L1	NM_133180	human	genbank	57_37b	+1	reviewed	missense	c.2006	p.K669R	1.000	NULL	HMMSmart_SM00462,HMMPfam_PTB,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	
ERI2	112479	genome.wustl.edu	37	16	20812611	20812611	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20812611	20812611	T	A	SNP	ERI2	NM_001142725	human	genbank	57_37b	-1	validated	missense	c.374	p.Q125L	1.000	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T,HMMPfam_zf-GRF	-	no_errors
ERN2	10595	genome.wustl.edu	37	16	23711935	23711935	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23711935	23711935	A	T	SNP	ERN2	NM_033266	human	genbank	57_37b	-1	validated	missense	c.1594	p.S532T	0.002	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMPfam_Ribonuc_2-5A,HMMSmart_SM00580	-	no_errors
HPS3	84343	genome.wustl.edu	37	3	148875176	148875176	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148875176	148875176	A	C	SNP	HPS3	NM_032383	human	genbank	57_37b	+1	reviewed	missense	c.1549	p.S517R	1.000	NULL	NULL	-	no_errors
HSPA2	3306	genome.wustl.edu	37	14	65007625	65007625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65007625	65007625	G	T	SNP	HSPA2	NM_021979	human	genbank	57_37b	+1	validated	missense	c.58	p.G20W	1.000	superfamily_SSF53067,HMMPfam_HSP70	superfamily_SSF53067,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF100920,superfamily_SSF100934	-	no_errors
IGDCC3	9543	genome.wustl.edu	37	15	65621441	65621441	+	Missense_Mutation	SNP	C	C	A	rs12907128	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65621441	65621441	C	A	SNP	IGDCC3	NM_004884	human	genbank	57_37b	-1	validated	missense	c.2251	p.V751L	0.004	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	
KLHL29	114818	genome.wustl.edu	37	2	23865260	23865260	+	Silent	SNP	T	T	C	rs642931	byCluster;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	23865260	23865260	T	C	SNP	KLHL29	ENST00000486442	human	ensembl	57_37b	+1	known	silent	c.480	p.I160	0.957	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMSmart_SM00612,HMMPfam_Kelch_1	-	
LIPG	9388	genome.wustl.edu	37	18	47093896	47093896	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47093896	47093896	G	C	SNP	LIPG	NM_006033	human	genbank	57_37b	+1	reviewed	missense	c.364	p.D122H	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors
LOC100289653	0	genome.wustl.edu	37	6	87607052	87607052	+	Missense_Mutation	SNP	G	G	A	rs61741606	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87607052	87607052	G	A	SNP	LOC100289653	XM_002342648	human	genbank	57_37b	+1	model	missense	c.217	p.E73K	0.837	NULL	superfamily_PH domain-like	-	
LOC729900	729900	genome.wustl.edu	37	15	23096921	23096921	+	RNA	SNP	A	A	C	rs4778307	byCluster;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23096921	23096921	A	C	SNP	LOC729900	XR_037628	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.001	-	-	-	
NCR1	9437	genome.wustl.edu	37	19	55417945	55417945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55417945	55417945	G	A	SNP	NCR1	NM_004829	human	genbank	57_37b	+1	validated	silent	c.135	p.V45	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
PCDHB13	56123	genome.wustl.edu	37	5	140595375	140595375	+	Silent	SNP	C	C	T	rs77651135	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140595375	140595375	C	T	SNP	PCDHB13	NM_018933	human	genbank	57_37b	+1	reviewed	silent	c.1680	p.F560	0.022	superfamily_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	
PIGQ	9091	genome.wustl.edu	37	16	625917	625917	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	625917	625917	C	A	SNP	PIGQ	NM_148920	human	genbank	57_37b	+1	reviewed	missense	c.768	p.H256Q	0.998	NULL	HMMPfam_Gpi1	-	no_errors
PIK3C2B	5287	genome.wustl.edu	37	1	204408104	204408104	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204408104	204408104	A	G	SNP	PIK3C2B	NM_002646	human	genbank	57_37b	-1	reviewed	missense	c.3475	p.W1159R	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors
PRSS23	11098	genome.wustl.edu	37	11	86519666	86519667	+	In_Frame_Ins	INS	-	-	CAGCAG	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	86519666	86519667	-	CAGCAG	INS	PRSS23	NM_007173	human	genbank	57_37b	+1	validated	in_frame_ins	c.981_982	p.330in_frame_insQQ	0.969:0.991	superfamily_Trypsin-like serine proteases	superfamily_Trypsin-like serine proteases,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors
RAB1A	5861	genome.wustl.edu	37	2	65315732	65315732	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65315732	65315732	C	G	SNP	RAB1A	NM_004161	human	genbank	57_37b	-1	reviewed	missense	c.513	p.E171D	1.000	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
RBM12B	389677	genome.wustl.edu	37	8	94748065	94748065	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	94748065	94748065	G	A	SNP	RBM12B	NM_203390	human	genbank	57_37b	-1	validated	nonsense	c.574	p.R192*	0.998	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors
RCAN3	11123	genome.wustl.edu	37	1	24859683	24859683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24859683	24859683	C	T	SNP	RCAN3	NM_013441	human	genbank	57_37b	+1	validated	silent	c.480	p.S160	0.082	HMMPfam_Calcipressin	HMMPfam_Calcipressin	-	no_errors
RGS20	8601	genome.wustl.edu	37	8	54791869	54791869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	54791869	54791869	G	A	SNP	RGS20	NM_170587	human	genbank	57_37b	+1	validated	missense	c.217	p.G73S	0.001	NULL	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
SELL	6402	genome.wustl.edu	37	1	169673765	169673765	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169673765	169673765	T	C	SNP	SELL	NM_000655	human	genbank	57_37b	-1	reviewed	missense	c.710	p.E237G	0.000	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
SELPLG	6404	genome.wustl.edu	37	12	109017607	109017607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109017607	109017607	C	T	SNP	SELPLG	NM_003006	human	genbank	57_37b	-1	reviewed	silent	c.447	p.T149	0.000	NULL	NULL	-	no_errors
SERINC1	57515	genome.wustl.edu	37	6	122775305	122775305	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	122775305	122775305	A	G	SNP	SERINC1	NM_020755	human	genbank	57_37b	-1	provisional	missense	c.442	p.F148L	1.000	HMMPfam_Serinc	HMMPfam_Serinc	-	no_errors
SLITRK1	114798	genome.wustl.edu	37	13	84454496	84454496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	84454496	84454496	G	C	SNP	SLITRK1	NM_052910	human	genbank	57_37b	-1	reviewed	missense	c.1147	p.R383G	0.996	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMSmart_LRRNT	-	no_errors
SMC6	79677	genome.wustl.edu	37	2	17902510	17902510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	17902510	17902510	G	A	SNP	SMC6	NM_001142286	human	genbank	57_37b	-1	validated	missense	c.745	p.R249C	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SUB1	10923	genome.wustl.edu	37	5	32601185	32601185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32601185	32601185	C	T	SNP	SUB1	NM_006713	human	genbank	57_37b	+1	validated	silent	c.379	p.L127	1.000	superfamily_ssDNA-binding transcriptional regulator domain	HMMPfam_PC4,superfamily_ssDNA-binding transcriptional regulator domain	-	no_errors
SYT9	143425	genome.wustl.edu	37	11	7335088	7335088	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7335088	7335088	C	A	SNP	SYT9	NM_175733	human	genbank	57_37b	+1	validated	silent	c.960	p.G320	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TMPRSS2	7113	genome.wustl.edu	37	21	42845383	42845383	+	Silent	SNP	A	A	G	rs17854725	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42845383	42845383	A	G	SNP	TMPRSS2	NM_005656	human	genbank	57_37b	-1	reviewed	silent	c.768	p.I256	0.058	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
TNXB	7148	genome.wustl.edu	37	6	32063896	32063896	+	Silent	SNP	G	G	A	rs41270458	byCluster	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32063896	32063896	G	A	SNP	TNXB	NM_019105	human	genbank	57_37b	-1	reviewed	silent	c.1734	p.D578	0.003	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	
TP53	7157	genome.wustl.edu	37	17	7578257	7578257	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578257	7578257	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.592	p.E198*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TPR	7175	genome.wustl.edu	37	1	186325525	186325525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186325525	186325525	C	T	SNP	TPR	NM_003292	human	genbank	57_37b	-1	reviewed	missense	c.1781	p.R594H	1.000	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
TSC2	7249	genome.wustl.edu	37	16	2136343	2136343	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2136343	2136343	C	A	SNP	TSC2	NM_000548	human	genbank	57_37b	+1	reviewed	silent	c.4812	p.G1604	0.994	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	superfamily_ARM repeat,HMMPfam_Tuberin,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors
UBR2	23304	genome.wustl.edu	37	6	42629951	42629951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42629951	42629951	G	A	SNP	UBR2	NM_015255	human	genbank	57_37b	+1	provisional	missense	c.3472	p.D1158N	0.994	NULL	PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RCC1_2	-	no_errors
USP21	27005	genome.wustl.edu	37	1	161134356	161134356	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161134356	161134356	T	-	DEL	USP21	NM_001014443	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1338	p.S446fs	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	(deletion:cds_exon[161134324,161134402])	no_errors
WWP2	11060	genome.wustl.edu	37	16	69922069	69922069	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69922069	69922069	A	C	SNP	WWP2	NM_007014	human	genbank	57_37b	+1	reviewed	silent	c.831	p.T277	0.016	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
ZNF473	25888	genome.wustl.edu	37	19	50548416	50548416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TS-01A-11D-A10Y-09	TCGA-AR-A0TS-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50548416	50548416	A	T	SNP	ZNF473	NM_001006656	human	genbank	57_37b	+1	validated	missense	c.716	p.H239L	0.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
