Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABRA	137735	genome.wustl.edu	37	8	107782189	107782189	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	107782189	107782189	C	A	SNP	ABRA	NM_139166	human	genbank	57_37b	-1	validated	missense	c.230	p.S77I	0.000	NULL	NULL	-	no_errors
ADAMTS12	81792	genome.wustl.edu	37	5	33576497	33576497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33576497	33576497	G	A	SNP	ADAMTS12	NM_030955	human	genbank	57_37b	-1	reviewed	missense	c.3634	p.P1212S	0.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ADAMTSL1	92949	genome.wustl.edu	37	9	18776871	18776871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18776871	18776871	G	A	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	missense	c.2644	p.V882M	0.171	superfamily_Immunoglobulin	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-	no_errors
APOL5	80831	genome.wustl.edu	37	22	36116635	36116635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36116635	36116635	G	A	SNP	APOL5	NM_030642	human	genbank	57_37b	+1	reviewed	missense	c.76	p.E26K	0.000	NULL	HMMPfam_ApoL	-	no_errors
CACNA1G	8913	genome.wustl.edu	37	17	48638898	48638898	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48638898	48638898	G	A	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	silent	c.78	p.S26	0.908	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
COL9A3	1299	genome.wustl.edu	37	20	61460288	61460288	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61460288	61460288	G	C	SNP	COL9A3	NM_001853	human	genbank	57_37b	+1	reviewed	missense	c.968	p.R323P	0.242	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
CRB2	286204	genome.wustl.edu	37	9	126129579	126129579	+	Missense_Mutation	SNP	G	G	T	rs74778545	by1000genomes	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126129579	126129579	G	T	SNP	CRB2	NM_173689	human	genbank	57_37b	+1	validated	missense	c.883	p.A295S	0.000	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,superfamily_EGF/Laminin	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	
DBC1	1620	genome.wustl.edu	37	9	121930047	121930047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	121930047	121930047	C	T	SNP	DBC1	NM_014618	human	genbank	57_37b	-1	validated	missense	c.1601	p.R534H	1.000	NULL	HMMSmart_SM00457	-	no_errors
FAM38A	9780	genome.wustl.edu	37	16	88787704	88787704	+	Silent	SNP	G	G	C	rs8043924	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88787704	88787704	G	C	SNP	FAM38A	ENST00000451779	human	ensembl	57_37b	-1	known	silent	c.4149	p.A1383	0.000	NULL	PatternScan_IG_MHC	-	
FAM53A	152877	genome.wustl.edu	37	4	1656776	1656776	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1656776	1656776	G	C	SNP	FAM53A	NM_001013622	human	genbank	57_37b	-1	validated	missense	c.811	p.R271G	0.978	NULL	NULL	-	no_errors
GPR1	2825	genome.wustl.edu	37	2	207041836	207041836	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207041836	207041836	A	C	SNP	GPR1	NM_001098199	human	genbank	57_37b	-1	validated	missense	c.136	p.C46G	0.011	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
GUCY2D	3000	genome.wustl.edu	37	17	7910008	7910008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7910008	7910008	G	A	SNP	GUCY2D	NM_000180	human	genbank	57_37b	+1	reviewed	missense	c.1354	p.D452N	0.981	NULL	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HPS3	84343	genome.wustl.edu	37	3	148880648	148880648	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148880648	148880648	C	T	SNP	HPS3	NM_032383	human	genbank	57_37b	+1	reviewed	nonsense	c.2464	p.R822*	0.706	NULL	NULL	-	no_errors
IL1RN	3557	genome.wustl.edu	37	2	113888708	113888708	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	113888708	113888708	G	T	SNP	IL1RN	NM_173841	human	genbank	57_37b	+1	reviewed	missense	c.301	p.G101C	0.976	HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1	HMMSmart_SM00125,superfamily_Cytokine,HMMPfam_IL1,PatternScan_INTERLEUKIN_1	-	no_errors
KIF2A	3796	genome.wustl.edu	37	5	61668293	61668293	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	61668293	61668293	G	C	SNP	KIF2A	NM_001098511	human	genbank	57_37b	+1	validated	missense	c.1675	p.D559H	1.000	HMMSmart_KISc	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LOC100287414	0	genome.wustl.edu	37	13	28240251	28240251	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28240251	28240251	A	-	DEL	LOC100287414	XM_002343233	human	genbank	57_37b	-1	model	frame_shift_del	c.126	p.H43fs	0.018	NULL	NULL	(deletion:cds_exon[28239873,28240376])	no_errors
LOC100288182	0	genome.wustl.edu	37	12	42853698	42853698	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	42853698	42853698	A	T	SNP	LOC100288182	XM_002343186	human	genbank	57_37b	+1	model	nonsense	c.109	p.R37*	0.043	NULL	NULL	-	no_errors
LTF	4057	genome.wustl.edu	37	3	46492156	46492156	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46492156	46492156	C	T	SNP	LTF	NM_002343	human	genbank	57_37b	-1	reviewed	silent	c.711	p.L237	0.989	superfamily_SSF53850,HMMPfam_Transferrin,HMMSmart_TR_FER	superfamily_SSF53850,HMMPfam_Transferrin,HMMSmart_TR_FER,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3	-	no_errors
MGAT5B	146664	genome.wustl.edu	37	17	74921072	74921072	+	Silent	SNP	G	G	C	rs3889145	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74921072	74921072	G	C	SNP	MGAT5B	NM_198955	human	genbank	57_37b	+1	validated	silent	c.1083	p.R361	1.000	NULL	NULL	-	
MUC4	4585	genome.wustl.edu	37	3	195497194	195497194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195497194	195497194	C	T	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.12907	p.E4303K	0.989	HMMSmart_SM00539	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195510725	195510725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195510725	195510725	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.7726	p.P2576S	0.025	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYO5B	4645	genome.wustl.edu	37	18	47352891	47352891	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47352891	47352891	A	C	SNP	MYO5B	NM_001080467	human	genbank	57_37b	-1	reviewed	missense	c.5497	p.S1833A	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_DIL	-	no_errors
NLK	51701	genome.wustl.edu	37	17	26495615	26495615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26495615	26495615	G	A	SNP	NLK	NM_016231	human	genbank	57_37b	+1	validated	missense	c.979	p.V327M	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
OPRL1	4987	genome.wustl.edu	37	20	62724253	62724253	+	Missense_Mutation	SNP	C	C	T	rs55872076	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62724253	62724253	C	T	SNP	OPRL1	ENST00000448285	human	ensembl	57_37b	+1	known	missense	c.65	p.P22L	0.083	NULL	HMMPfam_7tm_1,superfamily_SSF81321,PatternScan_G_PROTEIN_RECEP_F1_1	-	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRAMEF13	0	genome.wustl.edu	37	1	13448451	13448451	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13448451	13448451	C	G	SNP	PRAMEF13	NM_001024661	human	genbank	57_37b	-1	provisional	missense	c.1024	p.A342P	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
ROR1	4919	genome.wustl.edu	37	1	64643348	64643348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	64643348	64643348	G	A	SNP	ROR1	NM_005012	human	genbank	57_37b	+1	validated	missense	c.1624	p.V542I	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Fz,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
RTTN	25914	genome.wustl.edu	37	18	67863738	67863738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67863738	67863738	G	A	SNP	RTTN	NM_173630	human	genbank	57_37b	-1	validated	silent	c.840	p.H280	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
SH2D3C	10044	genome.wustl.edu	37	9	130504070	130504070	+	Silent	SNP	G	G	A	rs514024	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130504070	130504070	G	A	SNP	SH2D3C	NM_170600	human	genbank	57_37b	-1	validated	silent	c.2085	p.A695	0.991	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Ras GEF,HMMSmart_SM00147	-	
TBC1D2B	23102	genome.wustl.edu	37	15	78316850	78316850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78316850	78316850	C	T	SNP	TBC1D2B	NM_144572	human	genbank	57_37b	-1	validated	missense	c.1118	p.R373Q	0.992	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577018	7577018	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577018	7577018	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.919+1	e7+1	0.976	-	-	-	no_errors
VCAN	1462	genome.wustl.edu	37	5	82818011	82818011	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	82818011	82818011	G	-	DEL	VCAN	NM_004385	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3886	p.V1296fs	0.983	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	(deletion:cds_exon[82815168,82818128])	no_errors
VPS39	23339	genome.wustl.edu	37	15	42458983	42458983	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42458983	42458983	C	T	SNP	VPS39	NM_015289	human	genbank	57_37b	-1	reviewed	silent	c.1506	p.G502	1.000	HMMPfam_Vps39_1	HMMPfam_CNH,HMMPfam_Vps39_1,HMMPfam_Vps39_2	-	no_errors
ZNF3	7551	genome.wustl.edu	37	7	99673193	99673193	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99673193	99673193	G	C	SNP	ZNF3	NM_032924	human	genbank	57_37b	-1	validated	missense	c.116	p.A39G	1.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF439	90594	genome.wustl.edu	37	19	11979022	11979022	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0IE-01A-11W-A050-09	TCGA-B6-A0IE-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11979022	11979022	A	T	SNP	ZNF439	NM_152262	human	genbank	57_37b	+1	provisional	nonsense	c.1138	p.K380*	1.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
