Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CLCN6	1185	broad.mit.edu	37	1	11883823	11883823	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:11883823G>A	uc001ate.3	+	7	626	c.513G>A	c.(511-513)GTG>GTA	p.V171V	CLCN6_uc009vnf.1_Silent_p.V171V|CLCN6_uc009vng.1_Silent_p.V171V|CLCN6_uc009vnh.1_Silent_p.V171V|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Silent_p.V149V	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	171					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GCGTAAAGGTGCCAGGAATCG	0.542000													15	41					0	0	0	0
MST1P9	11223	broad.mit.edu	37	1	17083782	17083782	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:17083782A>C	uc010ock.1	-	15	2015	c.2015T>G	c.(2014-2016)TTC>TGC	p.F672C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.F272C	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GACACGCGTGAAGACGGCTGG	0.542000													5	17					0	0	0	0
MAP7D1	55700	broad.mit.edu	37	1	36644168	36644168	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:36644168G>A	uc001bzz.2	+	10	2073	c.1857G>A	c.(1855-1857)CAG>CAA	p.Q619Q	MAP7D1_uc001caa.2_Silent_p.Q587Q|MAP7D1_uc001cab.2_Silent_p.Q582Q|MAP7D1_uc001cac.2_Silent_p.Q319Q|MAP7D1_uc001cad.2_Silent_p.Q156Q	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	619	Potential.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				GCGAGGAGCAGGAGCGGAGGC	0.682000													2	3					0	0	0	0
SH3GLB1	51100	broad.mit.edu	37	1	87170606	87170606	+	Silent	SNP	G	T	T	rs150324653	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:87170606G>T	uc001dlw.2	+	1	350	c.24G>T	c.(22-24)GTG>GTT	p.V8V	SH3GLB1_uc001dlx.2_Silent_p.V8V|SH3GLB1_uc001dly.2_Silent_p.V8V|SH3GLB1_uc001dlz.2_5'UTR	NM_016009	NP_057093	Q9Y371	SHLB1_HUMAN	SH3-containing protein SH3GLB1	8	Membrane-binding amphipathic helix.			V->M: Abolishes interaction with BAX.	anti-apoptosis|filopodium assembly|signal transduction	Golgi membrane|mitochondrial outer membrane	cytoskeletal adaptor activity|protein homodimerization activity|SH3 domain binding				0		Lung NSC(277;0.209)		all cancers(265;0.0136)|Epithelial(280;0.0414)		ACTTCAACGTGAAGAAGCTGG	0.716000													4	10					2.0095e-06	2.08392e-06	1	0
TMEM206	55248	broad.mit.edu	37	1	212583849	212583849	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:212583849C>T	uc001hjc.3	-	2	219	c.51G>A	c.(49-51)TTG>TTA	p.L17L	TMEM206_uc010pte.1_Silent_p.L78L	NM_018252	NP_060722	Q9H813	TM206_HUMAN	transmembrane protein 206	17	Cytoplasmic (Potential).					integral to membrane				breast(1)	1				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		CCACCTGGACCAACTCCTCAC	0.502000													88	274					0	0	0	0
ITGA8	8516	broad.mit.edu	37	10	15590480	15590480	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr10:15590480G>A	uc001ioc.1	-	27	2854	c.2854C>T	c.(2854-2856)CGA>TGA	p.R952*	ITGA8_uc010qcb.1_Nonsense_Mutation_p.R937*	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	952	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GCCCATAATCGTGACCTGACT	0.483000													9	36					0	0	0	0
EIF3A	8661	broad.mit.edu	37	10	120795718	120795718	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr10:120795718G>A	uc001ldu.2	-	22	4128	c.3982C>T	c.(3982-3984)CGT>TGT	p.R1328C	EIF3A_uc010qsu.1_Missense_Mutation_p.R1294C	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1328					formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		GGAACTCGACGAGGAGGGTCC	0.448000													12	45					0	0	0	0
FAT3	120114	broad.mit.edu	37	11	92532047	92532047	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr11:92532047G>A	uc001pdj.3	+	9	5885	c.5868G>A	c.(5866-5868)AAG>AAA	p.K1956K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1956	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGATAGTTAAGGTGTCTGATG	0.418000										TCGA Ovarian(4;0.039)			11	28					0	0	0	0
CD163L1	283316	broad.mit.edu	37	12	7548909	7548909	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:7548909C>T	uc001qsy.2	-	8	1858	c.1832G>A	c.(1831-1833)GGC>GAC	p.G611D	CD163L1_uc010sge.1_Missense_Mutation_p.G621D	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	611	SRCR 6.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ACTGTTCCAGCCGTCATCACA	0.562000													12	45					0	0	0	0
DDX12	440081	broad.mit.edu	37	12	9574042	9574042	+	Missense_Mutation	SNP	C	A	A	rs7298124	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:9574042C>A	uc010sgs.1	-	20	2189	c.1994G>T	c.(1993-1995)AGC>ATC	p.S665I	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						GGAGACCCCGCTGCAGATGAC	0.592000													28	101					6.97489e-18	7.51142e-18	1	0
TAS2R19	259294	broad.mit.edu	37	12	11174603	11174603	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:11174603G>C	uc010shj.1	-	1	568	c.568C>G	c.(568-570)CTG>GTG	p.L190V	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176888	NP_795369	P59542	T2R19_HUMAN	taste receptor, type 2, member 19	190	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1						ATTAGGCTCAGAGTAAAGGGT	0.398000													23	112					0	0	0	0
ARID2	196528	broad.mit.edu	37	12	46233255	46233255	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:46233255C>T	uc001ros.1	+	11	1474	c.1474C>T	c.(1474-1476)CAG>TAG	p.Q492*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q492*|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q119*|ARID2_uc001rot.1_Nonsense_Mutation_p.Q138*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	492					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGTCCAAACCCAGACTCATGT	0.398000													29	124					0	0	0	0
FRY	10129	broad.mit.edu	37	13	32783029	32783029	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr13:32783029G>A	uc001utx.2	+	32	4554	c.4058G>A	c.(4057-4059)CGC>CAC	p.R1353H	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1353					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCCAACGGGCGCCAGATCATG	0.557000													14	46					0	0	0	0
CMA1	1215	broad.mit.edu	37	14	24976687	24976687	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr14:24976687G>A	uc001wpp.1	-	2	114	c.84C>T	c.(82-84)TGC>TGT	p.C28C	CMA1_uc010alx.1_Intron	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	28	Peptidase S1.			C -> S (in Ref. 7; AAB26828).	interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		AATGTGGCTTGCATTCTGTGC	0.493000													38	154					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	107062209	107062209	+	RNA	SNP	G	T	T	rs1778	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr14:107062209G>T	uc010tyt.1	-	131		c.6386C>A								Parts of antibodies, mostly variable regions.												0						ACGTGTCTACGGACATGGTGA	0.577000													51	174					7.82978e-24	8.54158e-24	1	0
NF1P1	440225	broad.mit.edu	37	15	22145400	22145401	+	RNA	DNP	GC	TT	TT	rs140569468	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr15:22145400_22145401GC>TT	uc010tzs.1	-	2		c.282_283GC>AA								Human NF1-related locus DNA in A9 mouse DNA background.												0						AACCACACTGGCCAGAGCCATC	0.371000													5	12					0	0	0	0
LOXL1	4016	broad.mit.edu	37	15	74241808	74241808	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr15:74241808G>A	uc002awc.1	+	6	1947	c.1611G>A	c.(1609-1611)GTG>GTA	p.V537V	LOXL1_uc002awd.1_RNA	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	537	Lysyl-oxidase like.				protein deamination	extracellular space	copper ion binding				0						AGGTGCACGTGAACCCAAAGT	0.423000													33	144					0	0	0	0
ABAT	18	broad.mit.edu	37	16	8862755	8862755	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr16:8862755G>A	uc002czc.3	+	11	907	c.741G>A	c.(739-741)CCG>CCA	p.P247P	ABAT_uc002czd.3_Silent_p.P247P|ABAT_uc010buh.2_Silent_p.P189P|ABAT_uc010bui.2_Silent_p.P247P	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	247				P -> T (in Ref. 2; AAB38510).	behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	CCATCGCACCGTTCCCACGGC	0.517000													57	177					0	0	0	0
FAM65A	79567	broad.mit.edu	37	16	67572623	67572623	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr16:67572623G>A	uc010vjp.1	+	3	309	c.213G>A	c.(211-213)GCG>GCA	p.A71A	FAM65A_uc010cei.1_5'UTR|FAM65A_uc002eth.2_Silent_p.A51A|FAM65A_uc010cej.2_Silent_p.A54A|FAM65A_uc002eti.1_Intron|FAM65A_uc010vjq.1_Silent_p.A65A|FAM65A_uc002etj.1_Silent_p.A50A|FAM65A_uc002etk.2_Silent_p.A50A	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	55						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		AGCCCCCCGCGCTCTCCCGAG	0.682000													21	98					0	0	0	0
ACSF3	197322	broad.mit.edu	37	16	89169065	89169065	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr16:89169065C>T	uc002fmp.2	+	4	1060	c.720C>T	c.(718-720)CAC>CAT	p.H240H	ACSF3_uc010cig.1_Silent_p.H240H|ACSF3_uc010cih.1_Translation_Start_Site|ACSF3_uc002fmq.1_RNA|ACSF3_uc010cii.1_RNA|ACSF3_uc002fmr.1_Translation_Start_Site	NM_174917	NP_777577	Q4G176	ACSF3_HUMAN	acyl-CoA synthetase family member 3 precursor	240					fatty acid metabolic process	mitochondrion	acid-thiol ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0281)		TGATCCTCCACGTGCTCCCGC	0.622000													18	58					0	0	0	0
KDSR	2531	broad.mit.edu	37	18	61027014	61027014	+	Silent	SNP	C	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr18:61027014C>A	uc010dpw.2	-	3	365	c.210G>T	c.(208-210)CTG>CTT	p.L70L	KDSR_uc010xem.1_Silent_p.L70L	NM_002035	NP_002026	Q06136	KDSR_HUMAN	3-ketodihydrosphingosine reductase precursor	70	Cytoplasmic (Potential).				3-keto-sphinganine metabolic process	endoplasmic reticulum membrane|extracellular space|integral to membrane	3-dehydrosphinganine reductase activity|binding			skin(1)	1						TCTTTGCCTGCAGCAGCTTAT	0.348000													17	41					0.00887093	0.00887093	1	0
C3	718	broad.mit.edu	37	19	6696608	6696608	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:6696608G>A	uc002mfm.2	-	22	2921	c.2859C>T	c.(2857-2859)GGC>GGT	p.G953G		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	953					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACTCACCACGGCCCAGGCGTT	0.597000													86	307					0	0	0	0
INSR	3643	broad.mit.edu	37	19	7184413	7184413	+	Silent	SNP	C	T	T	rs2229428	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:7184413C>T	uc002mgd.1	-	3	997	c.888G>A	c.(886-888)TCG>TCA	p.S296S	INSR_uc002mge.1_Silent_p.S296S|INSR_uc002mgf.2_Silent_p.S296S	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	296	Cys-rich.				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTGCCTCCGCGAGTTCTTGC	0.572000													13	56					0	0	0	0
DOCK6	57572	broad.mit.edu	37	19	11319683	11319683	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:11319683G>A	uc002mqs.3	-	38	4889	c.4848C>T	c.(4846-4848)GCC>GCT	p.A1616A	DOCK6_uc002mqr.3_Silent_p.A14A|DOCK6_uc010xlq.1_Silent_p.A955A	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1616	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						TGCACTGGGCGGCCTCGGCGT	0.692000													5	19					0	0	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025591	16025591	+	Silent	SNP	G	A	A	rs150098509	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:16025591G>A	uc002nbu.2	-	10	1266	c.1230C>T	c.(1228-1230)GAC>GAT	p.D410D	CYP4F11_uc010eab.1_Silent_p.D410D|CYP4F11_uc002nbt.2_Silent_p.D410D	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	410					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						TGACGCGGCCGTCTGGGAGCA	0.637000													30	92					0	0	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51633177	51633177	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:51633177C>T	uc002pvu.2	+	7	1300	c.1233C>T	c.(1231-1233)GAC>GAT	p.D411D	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	411	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GGGCAGAAGACAGTCCCCCAG	0.527000													48	92					0	0	0	0
ZNF765	91661	broad.mit.edu	37	19	53911920	53911920	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:53911920C>A	uc010ydx.1	+	6	1439	c.1112C>A	c.(1111-1113)ACA>AAA	p.T371K	ZNF765_uc002qbm.2_Missense_Mutation_p.T371K|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	371	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		TCACATTTTACATGCCATCAT	0.413000													20	74					7.45023e-12	7.82274e-12	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125192141	125192141	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:125192141G>A	uc002tno.2	+	5	974	c.610G>A	c.(610-612)GTG>ATG	p.V204M	CNTNAP5_uc010flu.2_Missense_Mutation_p.V204M	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	204	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TCTCAAAGATGTGATCTCCCT	0.493000													14	44					0	0	0	0
DHRS9	10170	broad.mit.edu	37	2	169948429	169948429	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:169948429C>G	uc002uep.2	+	7	2206	c.702C>G	c.(700-702)ATC>ATG	p.I234M	DHRS9_uc002ueq.2_Missense_Mutation_p.I234M|DHRS9_uc010zdc.1_Missense_Mutation_p.I294M|DHRS9_uc010zdd.1_Missense_Mutation_p.I234M|DHRS9_uc010zde.1_Missense_Mutation_p.I234M	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	234					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						CTCCAGACATCAAACAACAAT	0.413000													8	31					0	0	0	0
CYP27A1	1593	broad.mit.edu	37	2	219679314	219679314	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:219679314C>T	uc002viz.3	+	8	1744	c.1310C>T	c.(1309-1311)GCC>GTC	p.A437V		NM_000784	NP_000775	Q02318	CP27A_HUMAN	cytochrome P450, family 27, subfamily A,	437					bile acid biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	cholestanetriol 26-monooxygenase activity|electron carrier activity|heme binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;9.48e-07)|all cancers(144;0.000171)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00981)	Cholecalciferol(DB00169)	GACCCCACTGCCTTCTCTGAG	0.582000													15	50					0	0	0	0
PER2	8864	broad.mit.edu	37	2	239186554	239186554	+	Silent	SNP	C	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:239186554C>A	uc002vyc.2	-	2	261	c.24G>T	c.(22-24)CCG>CCT	p.P8P	PER2_uc010znv.1_Silent_p.P8P|PER2_uc010znw.1_Silent_p.P8P|PER2_uc010fyx.1_Silent_p.P8P	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	8					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		TGGGGCTGGGCGGAAATTCCG	0.602000													8	28					1.12685e-05	1.15433e-05	1	0
ZNF341	84905	broad.mit.edu	37	20	32378906	32378906	+	Silent	SNP	C	T	T	rs61734271	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr20:32378906C>T	uc002wzy.2	+	15	2168	c.2148C>T	c.(2146-2148)TGC>TGT	p.C716C	ZNF341_uc002wzx.2_Silent_p.C709C|ZNF341_uc010geq.2_Silent_p.C626C|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Silent_p.C143C	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	716					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GTGCTGGCTGCGCCAAGGGCT	0.637000													13	44					0	0	0	0
MC3R	4159	broad.mit.edu	37	20	54824200	54824200	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr20:54824200G>A	uc002xxb.2	+	1	413	c.301G>A	c.(301-303)GTC>ATC	p.V101I		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	138	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			GATCGCCATCGTCCACAGCGA	0.552000													13	56					0	0	0	0
UMODL1	89766	broad.mit.edu	37	21	43524101	43524101	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr21:43524101G>A	uc002zaf.1	+	9	1423	c.1423G>A	c.(1423-1425)GGG>AGG	p.G475R	UMODL1_uc002zad.1_Missense_Mutation_p.G403R|UMODL1_uc002zae.1_Missense_Mutation_p.G403R|UMODL1_uc002zag.1_Missense_Mutation_p.G475R|UMODL1_uc010gow.1_Missense_Mutation_p.G267R|UMODL1_uc002zai.1_Missense_Mutation_p.G126R|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Missense_Mutation_p.G126R|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Missense_Mutation_p.G220R|C21orf128_uc002zak.2_Silent_p.P44P	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	475	Extracellular (Potential).|SEA 1.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GCAGGACCCCGGGTTTCCCAT	0.602000													30	149					0	0	0	0
TRMT2A	27037	broad.mit.edu	37	22	20101289	20101289	+	Missense_Mutation	SNP	C	T	T	rs146579566	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:20101289C>T	uc002zrk.1	-	9	1491	c.1276G>A	c.(1276-1278)GAC>AAC	p.D426N	TRMT2A_uc002zrl.1_Missense_Mutation_p.D426N|TRMT2A_uc002zrm.1_Missense_Mutation_p.D248N|TRMT2A_uc002zrn.1_Missense_Mutation_p.D426N	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C	426					RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						TGGGCCCAGTCCTGGATGACT	0.672000													11	35					0	0	0	0
CABIN1	23523	broad.mit.edu	37	22	24463009	24463009	+	Silent	SNP	C	G	G			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:24463009C>G	uc002zzi.1	+	16	2236	c.2109C>G	c.(2107-2109)GGC>GGG	p.G703G	CABIN1_uc002zzj.1_Silent_p.G653G|CABIN1_uc002zzl.1_Silent_p.G703G	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	703					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ATGAAGCAGGCGACTACAAGG	0.547000													9	40					0	0	0	0
DEPDC5	9681	broad.mit.edu	37	22	32154558	32154558	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:32154558G>A	uc003als.2	+	3	227	c.85G>A	c.(85-87)GTG>ATG	p.V29M	DEPDC5_uc011als.1_Missense_Mutation_p.V29M|DEPDC5_uc011alu.1_Missense_Mutation_p.V29M|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Missense_Mutation_p.V29M|DEPDC5_uc003alr.1_Missense_Mutation_p.V29M|DEPDC5_uc011alt.1_Missense_Mutation_p.V29M	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	29					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						GAACCCCAAAGTGTTCCCTCA	0.378000													19	62					0	0	0	0
EP300	2033	broad.mit.edu	37	22	41546092	41546092	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:41546092G>A	uc003azl.3	+	14	3102	c.2707G>A	c.(2707-2709)GCT>ACT	p.A903T		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	903					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TTCACTTCCTGCTGCACCTTC	0.617000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				13	44					0	0	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50659169	50659169	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:50659169G>A	uc003bkb.1	-	16	4131	c.3619C>T	c.(3619-3621)CCC>TCC	p.P1207S	TUBGCP6_uc003bka.1_Missense_Mutation_p.P294S|TUBGCP6_uc010har.1_Missense_Mutation_p.P1199S|TUBGCP6_uc010has.1_RNA	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	1207	7.|9 X 27 AA tandem repeats.				G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		GGCCGGGTGGGAGCCATGTCT	0.622000													16	67					0	0	0	0
LMF2	91289	broad.mit.edu	37	22	50943408	50943408	+	Silent	SNP	C	T	T	rs139453267		TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:50943408C>T	uc003blp.2	-	10	1291	c.1260G>A	c.(1258-1260)CCG>CCA	p.P420P	LMF2_uc010hba.2_Silent_p.P242P|LMF2_uc003blo.2_Silent_p.P395P	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	420						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGTAGGAGTACGGCACCTGGA	0.687000													8	20					0	0	0	0
METTL6	131965	broad.mit.edu	37	3	15466554	15466554	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr3:15466554C>T	uc003bzs.1	-	3	526	c.268G>A	c.(268-270)GTT>ATT	p.V90I	METTL6_uc011avp.1_Intron|METTL6_uc003bzt.1_Missense_Mutation_p.V90I|EAF1_uc003bzu.2_5'Flank|EAF1_uc011avq.1_5'Flank	NM_152396	NP_689609	Q8TCB7	METL6_HUMAN	methyltransferase like 6	90							methyltransferase activity				0						CAGTTTCCAACCCCACAGCCA	0.373000													15	48					0	0	0	0
GALNTL2	117248	broad.mit.edu	37	3	16264172	16264172	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr3:16264172C>T	uc003car.3	+	9	2155	c.1680C>T	c.(1678-1680)CAC>CAT	p.H560H	GALNTL2_uc003caq.3_Silent_p.H293H|GALNTL2_uc003cas.3_Silent_p.H90H	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	560	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GCCCACAGCACCTGTGCTTTG	0.542000													68	80					0	0	0	0
GOLGB1	2804	broad.mit.edu	37	3	121416590	121416590	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr3:121416590A>G	uc003eei.3	-	13	2891	c.2765T>C	c.(2764-2766)TTT>TCT	p.F922S	GOLGB1_uc010hrc.2_Missense_Mutation_p.F927S|GOLGB1_uc003eej.3_Missense_Mutation_p.F888S|GOLGB1_uc011bjm.1_Missense_Mutation_p.F808S|GOLGB1_uc010hrd.1_Missense_Mutation_p.F886S	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	922	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CCCAAGAGAAAACTTCTCTTC	0.378000													33	64					0	0	0	0
SEMA5B	54437	broad.mit.edu	37	3	122634457	122634457	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr3:122634457C>T	uc003efz.1	-	14	2122	c.1818G>A	c.(1816-1818)GTG>GTA	p.V606V	SEMA5B_uc011bju.1_Silent_p.V548V|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.V606V|SEMA5B_uc010hro.1_Silent_p.V548V	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	606	Extracellular (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CATCCCGTGTCACATTCCGCA	0.557000													8	20					0	0	0	0
PIK3CA	5290	broad.mit.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr3:178917478G>A	uc003fjk.2	+	3	510	c.353G>A	c.(352-354)GGT>GAT	p.G118D		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	118					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.G118D(6)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TTTATTAAAGGTTTTGCTATC	0.338000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			28	26					0	0	0	0
GAK	2580	broad.mit.edu	37	4	884350	884350	+	Missense_Mutation	SNP	C	T	T	rs150270892	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr4:884350C>T	uc003gbm.3	-	10	1250	c.1051G>A	c.(1051-1053)GTG>ATG	p.V351M	GAK_uc003gbn.3_Missense_Mutation_p.V272M|GAK_uc010ibk.1_Missense_Mutation_p.V245M|GAK_uc003gbl.3_Missense_Mutation_p.V215M	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	351					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GCGGGGCCCACGGGAGGGGGT	0.642000													11	46					0	0	0	0
SH3TC1	54436	broad.mit.edu	37	4	8214503	8214503	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr4:8214503G>A	uc003gkv.3	+	4	424	c.323G>A	c.(322-324)GGC>GAC	p.G108D	SH3TC1_uc003gkw.3_Missense_Mutation_p.G32D|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	108							binding			large_intestine(2)|pancreas(1)	3						ACCCTCCGGGGCCAGCTCCGC	0.687000													7	19					0	0	0	0
PCDH7	5099	broad.mit.edu	37	4	30725117	30725117	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr4:30725117G>A	uc003gsk.1	+	1	3081	c.2073G>A	c.(2071-2073)ACG>ACA	p.T691T	PCDH7_uc011bxw.1_Silent_p.T644T|PCDH7_uc011bxx.1_Silent_p.T691T	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	691	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						AAAATGACACGGGGACCATTT	0.483000													28	108					0	0	0	0
APBB2	323	broad.mit.edu	37	4	41015609	41015609	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr4:41015609C>T	uc003gvl.2	-	6	1456	c.826G>A	c.(826-828)GAT>AAT	p.D276N	APBB2_uc003gvm.2_Missense_Mutation_p.D276N|APBB2_uc003gvn.2_Missense_Mutation_p.D276N|APBB2_uc011byt.1_Missense_Mutation_p.D259N	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	276					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						CCTGTTTCATCCGGGGAGCTG	0.512000													35	149					0	0	0	0
PSD2	84249	broad.mit.edu	37	5	139218317	139218317	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr5:139218317G>A	uc003leu.1	+	13	2133	c.1928G>A	c.(1927-1929)TGT>TAT	p.C643Y		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	643					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGAAGTTCTGTCGGCCCCTG	0.617000													17	74					0	0	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531568	140531568	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr5:140531568C>T	uc003lir.2	+	1	1730	c.1730C>T	c.(1729-1731)GCG>GTG	p.A577V	PCDHB6_uc011dah.1_Missense_Mutation_p.A441V	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	577	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGCCCCGGGCGGCCGAGCCG	0.697000													17	74					0	0	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615609	140615609	+	Missense_Mutation	SNP	G	A	A	rs2909999	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr5:140615609G>A	uc003ljc.1	+	1	1672	c.1324G>A	c.(1324-1326)GAC>AAC	p.D442N		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCCGCCCCAGGACCCGCACCT	0.652000													56	249					0	0	0	0
OR2H1	26716	broad.mit.edu	37	6	29430086	29430086	+	Silent	SNP	A	G	G			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr6:29430086A>G	uc003nmi.2	+	3	983	c.540A>G	c.(538-540)CCA>CCG	p.P180P	OR2H1_uc003nmj.1_Silent_p.P180P|OR2H1_uc010jri.1_Silent_p.P102P	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGAGGTCCCATCTCTGATTC	0.502000													44	176					0	0	0	0
SPDEF	25803	broad.mit.edu	37	6	34506204	34506204	+	Silent	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr6:34506204G>A	uc003ojq.1	-	6	1270	c.855C>T	c.(853-855)GCC>GCT	p.A285A	SPDEF_uc011dsq.1_Silent_p.A269A	NM_012391	NP_036523	O95238	SPDEF_HUMAN	SAM pointed domain containing ets transcription	285	ETS.				negative regulation of survival gene product expression|negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(3)|ovary(1)|central_nervous_system(1)	5						GGGCCACCTGGGCTGAGTCCT	0.587000													23	96					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152451909	152451909	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr6:152451909C>T	uc010kiw.2	-	145	26701	c.26099G>A	c.(26098-26100)CGA>CAA	p.R8700Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R3224Q|SYNE1_uc003qos.3_Missense_Mutation_p.R3224Q|SYNE1_uc003qot.3_Missense_Mutation_p.R8652Q|SYNE1_uc003qou.3_Missense_Mutation_p.R8700Q|SYNE1_uc003qop.3_Missense_Mutation_p.R885Q|SYNE1_uc011eez.1_Intron|SYNE1_uc003qoq.3_Intron|SYNE1_uc003qor.3_Intron	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8700	Ser-rich.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ACACTTGCCTCGTGGCTGTTT	0.458000										HNSCC(10;0.0054)			8	33					0	0	0	0
COBL	23242	broad.mit.edu	37	7	51203860	51203860	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr7:51203860C>A	uc003tpr.3	-	6	1137	c.952G>T	c.(952-954)GAA>TAA	p.E318*	COBL_uc003tps.2_Nonsense_Mutation_p.E318*|COBL_uc011kcl.1_Nonsense_Mutation_p.E318*|COBL_uc010kzc.2_Nonsense_Mutation_p.E318*|COBL_uc003tpt.2_Nonsense_Mutation_p.E318*|COBL_uc003tpp.3_Nonsense_Mutation_p.E47*|COBL_uc003tpq.3_Nonsense_Mutation_p.E259*	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	318	Pro-rich.									skin(3)|ovary(2)	5	Glioma(55;0.08)					CCTACCTTTTCCGATGCCTTG	0.542000													22	41					1.64293e-13	1.74692e-13	1	0
PMS2L11	441263	broad.mit.edu	37	7	76631515	76631515	+	RNA	SNP	G	A	A	rs61737189	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr7:76631515G>A	uc003ufw.3	+	4		c.656G>A			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCCGCAGCGTCTGGATACA	0.617000													10	26					0	0	0	0
COL1A2	1278	broad.mit.edu	37	7	94038721	94038721	+	Missense_Mutation	SNP	G	A	A	rs145693444	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr7:94038721G>A	uc003ung.1	+	17	1351	c.880G>A	c.(880-882)GTT>ATT	p.V294I	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	294					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CTCCGGCCCCGTTGGACCTCC	0.502000										HNSCC(75;0.22)			35	45					0	0	0	0
C7orf58	79974	broad.mit.edu	37	7	120906436	120906436	+	Silent	SNP	C	T	T	rs145128194		TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr7:120906436C>T	uc003vjq.3	+	19	2913	c.2466C>T	c.(2464-2466)CCC>CCT	p.P822P		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	822						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CCTACTATCCCCAGTTCTGGA	0.403000													30	103					0	0	0	0
SGK223	157285	broad.mit.edu	37	8	8235417	8235417	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr8:8235417C>T	uc003wsh.3	-	2	502	c.502G>A	c.(502-504)GAG>AAG	p.E168K		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	168							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CCGCGGGGCTCAAGGTTGTGC	0.592000													23	50					0	0	0	0
SCARA3	51435	broad.mit.edu	37	8	27509034	27509034	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr8:27509034G>A	uc003xga.1	+	3	257	c.116G>A	c.(115-117)GGG>GAG	p.G39E	SCARA3_uc003xgb.1_Missense_Mutation_p.G39E	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	39	Cytoplasmic (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		GGCCGGCCAGGGCCCCGCTGC	0.617000													12	38					0	0	0	0
IKBKB	3551	broad.mit.edu	37	8	42177162	42177162	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr8:42177162C>T	uc003xow.1	+	15	1753	c.1576C>T	c.(1576-1578)CGG>TGG	p.R526W	IKBKB_uc010lxh.1_3'UTR|IKBKB_uc011lco.1_Intron|IKBKB_uc010lxj.1_Missense_Mutation_p.R303W|IKBKB_uc003xox.1_Missense_Mutation_p.R247W|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.R524W|IKBKB_uc010lxi.1_Intron|IKBKB_uc011lcr.1_Missense_Mutation_p.R467W	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	526					anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	GCTCTGTGGGCGGGTAGGAGA	0.438000											OREG0018747	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	22					0	0	0	0
SOX17	64321	broad.mit.edu	37	8	55372477	55372477	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr8:55372477C>T	uc003xsb.3	+	2	1371	c.1167C>T	c.(1165-1167)CCC>CCT	p.P389P		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	389	Sox C-terminal.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			TGAATCTCCCCGACAGCCACG	0.607000													23	66					0	0	0	0
SNX31	169166	broad.mit.edu	37	8	101589289	101589289	+	Silent	SNP	C	G	G	rs149337394	byFrequency	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr8:101589289C>G	uc003yjr.2	-	13	1336	c.1185G>C	c.(1183-1185)CCG>CCC	p.P395P	SNX31_uc011lha.1_Silent_p.P190P|SNX31_uc011lhb.1_Silent_p.P296P	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	395					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			TGCTTTGTTCCGGAACTTCAA	0.348000													43	101					0	0	0	0
OR13F1	138805	broad.mit.edu	37	9	107267480	107267480	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr9:107267480G>A	uc011lvm.1	+	1	937	c.937G>A	c.(937-939)GCC>ACC	p.A313T		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TTTTAATACTGCCTTCATTTC	0.358000													12	40					0	0	0	0
CCDC120	90060	broad.mit.edu	37	X	48925109	48925109	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:48925109G>A	uc010nik.2	+	10	1861	c.1354G>A	c.(1354-1356)GGC>AGC	p.G452S	CCDC120_uc011mmq.1_Missense_Mutation_p.G440S|CCDC120_uc004dmf.2_Missense_Mutation_p.G452S|CCDC120_uc010nil.2_Missense_Mutation_p.G452S|CCDC120_uc011mmr.1_Missense_Mutation_p.G452S|CCDC120_uc011mms.1_Missense_Mutation_p.G440S	NM_033626	NP_296375	Q96HB5	CC120_HUMAN	coiled-coil domain containing 120 isoform 3	452	Pro-rich.						protein binding			pancreas(1)	1						CTTGGACCGGGGCCTGCCCCG	0.716000													12	35					0	0	0	0
CPXCR1	53336	broad.mit.edu	37	X	88008652	88008652	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:88008652T>A	uc004efd.3	+	3	496	c.237T>A	c.(235-237)GAT>GAA	p.D79E	CPXCR1_uc004efc.3_Missense_Mutation_p.D79E	NM_033048	NP_149037	Q8N123	CPXCR_HUMAN	CPX chromosome region, candidate 1	79						intracellular	zinc ion binding			ovary(3)	3						TCCAAAAAGATCAACGAGAAG	0.458000													8	17					0	0	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117959418	117959418	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:117959418G>A	uc004equ.2	+	4	684	c.211G>A	c.(211-213)GTC>ATC	p.V71I		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	71					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						agtcaatggcgtcctgccaga	0.055000													22	58					0	0	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125298805	125298805	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:125298805C>T	uc004euk.1	-	1	1130	c.1103G>A	c.(1102-1104)GGC>GAC	p.G368D		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	368	WD 4.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GGAACCATGGCCGGTGCCCAC	0.652000													19	61					0	0	0	0
GABRQ	55879	broad.mit.edu	37	X	151815526	151815526	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:151815526G>C	uc004ffp.1	+	4	444	c.424G>C	c.(424-426)GAC>CAC	p.D142H		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	142	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTGGGTCCCTGACTGCTACTT	0.488000													27	69					0	0	0	0
PLXNA3	55558	broad.mit.edu	37	X	153695914	153695914	+	Silent	SNP	C	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chrX:153695914C>T	uc004flm.2	+	20	3641	c.3468C>T	c.(3466-3468)GCC>GCT	p.A1156A		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1156	IPT/TIG 4.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCGCGGCAGCCGGCAGCTCCC	0.662000													8	9					0	0	0	0
SAMD11	148398	broad.mit.edu	37	1	874816	874817	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:874816_874817insT	uc001abw.1	+	7	762_763	c.682_683insT	c.(682-684)CCCfs	p.P228fs	SAMD11_uc001abx.1_Intron	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	228						nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CTGGCATGATCCCCCTCATCAC	0.644													---	---	---							
LOC642587	642587	broad.mit.edu	37	1	209605637	209605648	+	In_Frame_Del	DEL	AGCAGCAGCAGC	-	-	rs3842530		TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr1:209605637_209605648delAGCAGCAGCAGC	uc009xcn.2	+	4	635_646	c.252_263delAGCAGCAGCAGC	c.(250-264)GTAGCAGCAGCAGCA>GTA	p.AAAA93del		NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		ccaccaccgTagcagcagcagcagcagcagca	0.283													---	---	---							
OR10A2	341276	broad.mit.edu	37	11	6891253	6891255	+	In_Frame_Del	DEL	TTC	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr11:6891253_6891255delTTC	uc001meu.1	+	1	268_270	c.268_270delTTC	c.(268-270)TTCdel	p.F94del		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	94	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TCAGATGTATTTCTTCTTCTTCT	0.517													---	---	---							
CBX5	23468	broad.mit.edu	37	12	54645832	54645832	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:54645832delT	uc001sfh.3	-	3	635	c.317delA	c.(316-318)AAGfs	p.K106fs	CBX5_uc001sfk.3_Frame_Shift_Del_p.K106fs|CBX5_uc001sfi.3_Frame_Shift_Del_p.K106fs|CBX5_uc001sfj.3_Frame_Shift_Del_p.K106fs	NM_001127322	NP_001120794	P45973	CBX5_HUMAN	heterochromatin protein 1-alpha	106					blood coagulation|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|nuclear centromeric heterochromatin|nuclear envelope|nucleolus|transcriptional repressor complex	methylated histone residue binding|protein binding, bridging|repressing transcription factor binding				0						TACCTCTCTCTTTTTTTTAGA	0.323													---	---	---							
Unknown	0	broad.mit.edu	37	12	97639114	97639115	+	IGR	DEL	AC	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr12:97639114_97639115delAC								NEDD1 (291653 upstream) : RMST (219684 downstream)																							CTACCCCCAAACACTATAACTC	0.421													---	---	---							
MRPL28	10573	broad.mit.edu	37	16	420374	420374	+	5'Flank	DEL	C	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr16:420374delC	uc002cgr.1	-						MRPL28_uc010bqu.1_5'Flank|MRPL28_uc002cgs.1_Intron|MRPL28_uc002cgt.1_Intron	NM_006428	NP_006419	Q13084	RM28_HUMAN	mitochondrial ribosomal protein L28 precursor						translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0		Hepatocellular(16;0.000105)|Lung NSC(18;0.0324)|all_lung(18;0.064)				gctaccccggcccccggctct	0.040													---	---	---							
KRTAP1-1	81851	broad.mit.edu	37	17	39197441	39197441	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr17:39197441delC	uc002hvw.1	-	1	273	c.209delG	c.(208-210)TGCfs	p.C70fs		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	70			Missing (in allele KAP1.7).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			TGGCTGGCAGCAGCTAGAGTC	0.587													---	---	---							
MLLT1	4298	broad.mit.edu	37	19	6222423	6222424	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:6222423_6222424insG	uc002mek.2	-	6	982_983	c.818_819insC	c.(817-819)CCAfs	p.P273fs		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	273	Poly-Pro.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						ggggtgggggtgggggCCCACC	0.550			T	MLL	AL								---	---	---							
MLL4	9757	broad.mit.edu	37	19	36215897	36215903	+	Frame_Shift_Del	DEL	TGGCCCC	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr19:36215897_36215903delTGGCCCC	uc010eei.2	+	11	3437_3443	c.3437_3443delTGGCCCC	c.(3436-3444)TTGGCCCCTfs	p.L1146fs		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1146_1148					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CAGGATGCTTTGGCCCCTGGCCCCTTT	0.585													---	---	---							
ASXL2	55252	broad.mit.edu	37	2	26022304	26022306	+	In_Frame_Del	DEL	CTG	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:26022304_26022306delCTG	uc002rgs.2	-	4	572_574	c.351_353delCAG	c.(349-354)AGCAGT>AGT	p.117_118SS>S		NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	117_118	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCCACCATCACTGCTGCTGCTGC	0.463													---	---	---							
Unknown	0	broad.mit.edu	37	2	130948314	130948315	+	IGR	INS	-	T	T	rs71396588		TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr2:130948314_130948315insT								FAM128B (15 upstream) : TUBA3E (1006 downstream)																							GTTGTCTACCGttttttttttt	0.406													---	---	---							
EIF2S2	8894	broad.mit.edu	37	20	32677659	32677661	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr20:32677659_32677661delCTT	uc002xaf.2	-	9	1046_1048	c.877_879delAAG	c.(877-879)AAGdel	p.K293del	EIF2S2_uc002xag.2_In_Frame_Del_p.K290del|EIF2S2_uc010ges.2_In_Frame_Del_p.K233del	NM_003908	NP_003899	P20042	IF2B_HUMAN	eukaryotic translation initiation factor 2 beta	293	C4-type (Potential).					cytosol|eukaryotic translation initiation factor 2 complex	metal ion binding|protein binding|translation initiation factor activity			large_intestine(1)	1						GTCGTGTGTCCTTCTGCAGGATT	0.488													---	---	---							
STMN3	50861	broad.mit.edu	37	20	62273563	62273565	+	In_Frame_Del	DEL	GTT	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr20:62273563_62273565delGTT	uc002yfr.1	-	4	461_463	c.379_381delAAC	c.(379-381)AACdel	p.N127del	STMN3_uc011abb.1_In_Frame_Del_p.N127del	NM_015894	NP_056978	Q9NZ72	STMN3_HUMAN	SCG10-like-protein	127	Potential.				cytoplasmic microtubule organization|intracellular signal transduction|negative regulation of Rac protein signal transduction|neuron projection development|regulation of cytoskeleton organization|regulation of Rac GTPase activity	cytoplasm	protein domain specific binding				0	all_cancers(38;2.31e-11)|all_epithelial(29;7.76e-13)		Epithelial(9;1.9e-09)|all cancers(9;1.22e-08)|BRCA - Breast invasive adenocarcinoma(10;8.86e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.00559)			GGCGGCTGAAGTTGTTATTCTCC	0.670													---	---	---							
Unknown	0	broad.mit.edu	37	22	20149825	20149827	+	IGR	DEL	ACC	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:20149825_20149827delACC								ZDHHC8 (14296 upstream) : LOC150197 (44028 downstream)																							caccatcactaccaccaccacca	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	22	25092133	25092134	+	IGR	INS	-	TCC	TCC	rs140281622	by1000genomes	TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr22:25092133_25092134insTCC								POM121L10P (37019 upstream) : PIWIL3 (22867 downstream)																							ctccttcccattcctcctcctc	0.292													---	---	---							
Unknown	0	broad.mit.edu	37	5	180708776	180708777	+	IGR	INS	-	G	G	rs140221514		TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr5:180708776_180708777insG								TRIM52 (20657 upstream) : None (None downstream)																							gggcggtaggagggggctggag	0.144													---	---	---							
BAT4	7918	broad.mit.edu	37	6	31630061	31630062	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr6:31630061_31630062insT	uc003nvn.2	-	3	1697_1698	c.1052_1053insA	c.(1051-1053)TACfs	p.Y351fs	C6orf47_uc003nvm.1_5'Flank|BAT4_uc003nvo.3_Frame_Shift_Ins_p.Y351fs|BAT4_uc003nvp.3_Frame_Shift_Ins_p.Y351fs|BAT4_uc003nvq.2_Frame_Shift_Ins_p.Y351fs	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	351						intracellular	nucleic acid binding				0						CGAGGTTCATGTAAGTCCTTAG	0.579													---	---	---							
C7orf27	221927	broad.mit.edu	37	7	2578389	2578389	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr7:2578389delG	uc003smi.2	-	14	1822	c.1780delC	c.(1780-1782)CTGfs	p.L594fs	C7orf27_uc003smh.3_Frame_Shift_Del_p.L26fs	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	594					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		AGGAGCTCCAGGAACAGGCTC	0.647													---	---	---							
NOTCH1	4851	broad.mit.edu	37	9	139400209	139400209	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7863-01A-11D-2229-08	TCGA-BB-7863-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	0bf356d5-1259-4042-9860-2f793f5fe32c	b93c12cc-bb24-4437-b373-3842d878e488	g.chr9:139400209delC	uc004chz.2	-	25	4139	c.4139delG	c.(4138-4140)GGCfs	p.G1380fs	NOTCH1_uc004cia.1_Frame_Shift_Del_p.G610fs	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1380	Extracellular (Potential).|EGF-like 35.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GCATTCGGGGCCCGTGAAGGG	0.697			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			---	---	---							
