Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA13	154664	genome.wustl.edu	37	7	48352730	48352730	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48352730	48352730	G	A	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.9583	p.A3195T	0.055	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
ACAD9	28976	genome.wustl.edu	37	3	128631355	128631355	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128631355	128631355	C	G	SNP	ACAD9	NM_014049	human	genbank	57_37b	+1	validated	missense	c.1771	p.P591A	1.000	NULL	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	-	no_errors
ACOT8	10005	genome.wustl.edu	37	20	44485923	44485923	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44485923	44485923	T	G	SNP	ACOT8	NM_005469	human	genbank	57_37b	-1	reviewed	missense	c.32	p.Q11P	0.612	NULL	superfamily_SSF54637,HMMPfam_Acyl_CoA_thio	-	no_errors
AVPR1B	553	genome.wustl.edu	37	1	206224520	206224520	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206224520	206224520	T	A	SNP	AVPR1B	NM_000707	human	genbank	57_37b	+1	reviewed	missense	c.80	p.L27Q	0.963	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68844191	68844191	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68844191	68844191	C	A	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	missense	c.779	p.P260H	0.996	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
DDX12	440081	genome.wustl.edu	37	12	9573223	9573223	+	Missense_Mutation	SNP	C	C	A	rs4763936	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9573223	9573223	C	A	SNP	DDX12	NM_004400	human	genbank	57_37b	-1	validated	missense	c.2090	p.G697V	0.883	NULL	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	
DGKG	1608	genome.wustl.edu	37	3	185986591	185986591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185986591	185986591	G	A	SNP	DGKG	NM_001346	human	genbank	57_37b	-1	reviewed	missense	c.1115	p.T372M	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
DYRK1A	1859	genome.wustl.edu	37	21	38884543	38884543	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38884543	38884543	A	G	SNP	DYRK1A	NM_001396	human	genbank	57_37b	+1	reviewed	silent	c.2001	p.T667	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
EPHB1	2047	genome.wustl.edu	37	3	134920392	134920392	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134920392	134920392	C	A	SNP	EPHB1	NM_004441	human	genbank	57_37b	+1	reviewed	missense	c.2207	p.A736D	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
FAM123B	139285	genome.wustl.edu	37	X	63412049	63412049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63412049	63412049	G	A	SNP	FAM123B	NM_152424	human	genbank	57_37b	-1	validated	missense	c.1118	p.A373V	1.000	HMMPfam_WTX	HMMPfam_WTX	-	no_errors
FOXP3	50943	genome.wustl.edu	37	X	49107842	49107842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49107842	49107842	G	A	SNP	FOXP3	NM_014009	human	genbank	57_37b	-1	reviewed	missense	c.1249	p.R417W	0.997	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head"	"PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
GPR39	2863	genome.wustl.edu	37	2	133175212	133175212	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133175212	133175212	C	T	SNP	GPR39	NM_001508	human	genbank	57_37b	+1	validated	silent	c.597	p.H199	0.223	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GSDMC	56169	genome.wustl.edu	37	8	130777949	130777949	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	130777949	130777949	G	A	SNP	GSDMC	NM_031415	human	genbank	57_37b	-1	validated	silent	c.495	p.I165	0.001	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	no_errors
HS3ST4	9951	genome.wustl.edu	37	16	26147359	26147359	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	26147359	26147359	T	C	SNP	HS3ST4	ENST00000331351	human	ensembl	57_37b	+1	known	silent	c.1161	p.Y387	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
KIAA0430	9665	genome.wustl.edu	37	16	15692757	15692757	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15692757	15692757	T	C	SNP	KIAA0430	NM_014647	human	genbank	57_37b	-1	validated	silent	c.4938	p.Q1646	0.191	NULL	HMMPfam_DUF537,superfamily_RNA-binding domain RBD,HMMSmart_SM00360	-	no_errors
KIF21B	23046	genome.wustl.edu	37	1	200969636	200969636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200969636	200969636	C	T	SNP	KIF21B	NM_017596	human	genbank	57_37b	-1	provisional	missense	c.1567	p.A523T	0.000	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
LCE2B	26239	genome.wustl.edu	37	1	152659368	152659368	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152659368	152659368	C	A	SNP	LCE2B	NM_014357	human	genbank	57_37b	+1	reviewed	missense	c.49	p.P17T	0.996	NULL	NULL	-	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65270001	65270004	+	RNA	DEL	TGTT	TGTT	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65270001	65270004	TGTT	-	DEL	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.002:0.001:0.204:0.198	-	-	(deletion:rna[65265233,65273940])	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65270001	65270004	+	RNA	DEL	TGTT	TGTT	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65270001	65270004	TGTT	-	DEL	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.002:0.001:0.204:0.198	-	-	(deletion:rna[65265233,65273940])	no_errors
MMRN1	22915	genome.wustl.edu	37	4	90816310	90816310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90816310	90816310	C	T	SNP	MMRN1	NM_007351	human	genbank	57_37b	+1	reviewed	missense	c.188	p.A63V	0.093	NULL	HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
MSLNL	0	genome.wustl.edu	37	16	830786	830787	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	830786	830787	-	A	INS	MSLNL	NM_001025190	human	genbank	57_37b	-1	provisional	frame_shift_ins	c.215_214	p.R72fs	0.211:0.244	NULL	HMMPfam_Mesothelin	-	no_errors
NT5DC1	221294	genome.wustl.edu	37	6	116544201	116544201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	116544201	116544201	G	A	SNP	NT5DC1	NM_152729	human	genbank	57_37b	+1	validated	missense	c.709	p.D237N	1.000	HMMPfam_5_nucleotid	HMMPfam_5_nucleotid	-	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140530408	140530408	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140530408	140530408	C	-	DEL	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.570	p.P191fs	0.025	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	(deletion:cds_exon[140529839,140532223])	no_errors
PCDHB6	56130	genome.wustl.edu	37	5	140530408	140530408	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140530408	140530408	C	-	DEL	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.570	p.P191fs	0.025	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	(deletion:cds_exon[140529839,140532223])	no_errors
PHC1B	0	genome.wustl.edu	37	12	55805683	55805683	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55805683	55805683	G	A	SNP	PHC1B	ENST00000326184	human	ensembl	57_37b	-1	known	silent	c.2838	p.Y946	0.969	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	HMMPfam_zf-FCS,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
PHF12	57649	genome.wustl.edu	37	17	27238154	27238154	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27238154	27238154	G	A	SNP	PHF12	NM_001033561	human	genbank	57_37b	-1	validated	nonsense	c.2191	p.R731*	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SMAD/FHA domain	-	no_errors
PHF12	57649	genome.wustl.edu	37	17	27238154	27238154	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27238154	27238154	G	A	SNP	PHF12	NM_001033561	human	genbank	57_37b	-1	validated	nonsense	c.2191	p.R731*	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_SMAD/FHA domain	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
POGZ	23126	genome.wustl.edu	37	1	151377585	151377585	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151377585	151377585	A	G	SNP	POGZ	NM_015100	human	genbank	57_37b	-1	reviewed	missense	c.3926	p.L1309P	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674,HMMPfam_DDE	-	no_errors
POTEF	728378	genome.wustl.edu	37	2	130831831	130831831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	130831831	130831831	G	A	SNP	POTEF	NM_001099771	human	genbank	57_37b	-1	validated	missense	c.3214	p.R1072C	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
RGS7	6000	genome.wustl.edu	37	1	240975222	240975222	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240975222	240975222	A	C	SNP	RGS7	NM_002924	human	genbank	57_37b	-1	validated	missense	c.1078	p.L360V	0.999	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	superfamily_SSF46785,HMMSmart_DEP,HMMPfam_DEP,superfamily_G-protein_gamma-like,HMMPfam_G-gamma,HMMSmart_GGL,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors
SAAL1	113174	genome.wustl.edu	37	11	18105265	18105281	+	Frame_Shift_Del	DEL	TAGAGGAAGATCTACTG	TAGAGGAAGATCTACTG	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	TAGAGGAAGATCTACTG	TAGAGGAAGATCTACTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18105265	18105281	TAGAGGAAGATCTACTG	-	DEL	SAAL1	NM_138421	human	genbank	57_37b	-1	validated	frame_shift_del	c.1056_1043	p.V348fs	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.998:0.990:0.242:0.062	NULL	superfamily_ARM-type_fold	(deletion:cds_exon[18105082,18105278], intron[18105279,18108412])	no_errors
SAAL1	113174	genome.wustl.edu	37	11	18105265	18105281	+	Frame_Shift_Del	DEL	TAGAGGAAGATCTACTG	TAGAGGAAGATCTACTG	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	TAGAGGAAGATCTACTG	TAGAGGAAGATCTACTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18105265	18105281	TAGAGGAAGATCTACTG	-	DEL	SAAL1	NM_138421	human	genbank	57_37b	-1	validated	frame_shift_del	c.1056_1043	p.V348fs	0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.998:0.990:0.242:0.062	NULL	superfamily_ARM-type_fold	(deletion:cds_exon[18105082,18105278], intron[18105279,18108412])	no_errors
SESTD1	91404	genome.wustl.edu	37	2	180047811	180047811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	180047811	180047811	G	A	SNP	SESTD1	NM_178123	human	genbank	57_37b	-1	validated	missense	c.160	p.P54S	1.000	NULL	superfamily_Spectrin,HMMSmart_SPEC	-	no_errors
TBC1D29	26083	genome.wustl.edu	37	17	28887667	28887667	+	Silent	SNP	T	T	C	rs78888987	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28887667	28887667	T	C	SNP	TBC1D29	NM_015594	human	genbank	57_37b	+1	validated	silent	c.111	p.D37	1.000	superfamily_RabGAP_TBC	superfamily_RabGAP_TBC	-	
VILL	50853	genome.wustl.edu	37	3	38039827	38039827	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38039827	38039827	A	-	DEL	VILL	NM_015873	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.914	p.E305fs	1.000	superfamily_C-terminal gelsolin-like domain of Sec23/24,HMMSmart_SM00262,HMMPfam_Gelsolin	HMMSmart_SM00262,superfamily_Actin depolymerizing proteins,HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24,PatternScan_CYTOCHROME_B5_1,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	(deletion:cds_exon[38039757,38039855])	no_errors
WDFY3	23001	genome.wustl.edu	37	4	85708711	85708711	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	85708711	85708711	T	G	SNP	WDFY3	NM_014991	human	genbank	57_37b	-1	reviewed	missense	c.3825	p.L1275F	0.969	NULL	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cyclin-like,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
ZNF589	51385	genome.wustl.edu	37	3	48282695	48282695	+	Missense_Mutation	SNP	A	A	G	rs9847953	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-11A-22W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48282695	48282695	A	G	SNP	ZNF589	NM_016089	human	genbank	57_37b	+1	validated	missense	c.34	p.T12A	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF841	284371	genome.wustl.edu	37	19	52570087	52570087	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BA-01A-11W-A071-09	TCGA-BH-A0BA-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52570087	52570087	A	C	SNP	ZNF841	NM_001136499	human	genbank	57_37b	-1	validated	missense	c.1048	p.C350G	0.992	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_IG_MHC	-	no_errors
