Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTS9	56999	genome.wustl.edu	37	3	64554073	64554073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	64554073	64554073	G	A	SNP	ADAMTS9	NM_182920	human	genbank	57_37b	-1	reviewed	missense	c.4495	p.P1499S	1.000	HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ANKRD16	54522	genome.wustl.edu	37	10	5925971	5925971	+	Silent	SNP	C	C	A	rs631947	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5925971	5925971	C	A	SNP	ANKRD16	NM_001009941	human	genbank	57_37b	-1	validated	silent	c.648	p.G216	0.114	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	
C11orf84	144097	genome.wustl.edu	37	11	63586314	63586314	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63586314	63586314	A	C	SNP	C11orf84	NM_138471	human	genbank	57_37b	+1	predicted	silent	c.774	p.A258	0.998	NULL	NULL	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140866030	140866030	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140866030	140866030	T	-	DEL	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	frame_shift_del	c.1529	p.T511fs	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	(deletion:cds_exon[140865835,140866044])	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140866030	140866030	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140866030	140866030	T	-	DEL	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	frame_shift_del	c.1529	p.T511fs	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	(deletion:cds_exon[140865835,140866044])	no_errors
CSMD1	64478	genome.wustl.edu	37	8	2830770	2830770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	2830770	2830770	C	T	SNP	CSMD1	NM_033225	human	genbank	57_37b	-1	validated	missense	c.8795	p.R2932Q	0.997	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
CSPG4	1464	genome.wustl.edu	37	15	75983021	75983021	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75983021	75983021	G	A	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.385	p.L129	0.431	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
CYP2D6	1565	genome.wustl.edu	37	22	42523528	42523528	+	Missense_Mutation	SNP	C	C	T	rs1058172	byFrequency	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42523528	42523528	C	T	SNP	CYP2D6	NM_000106	human	genbank	57_37b	-1	reviewed	missense	c.1094	p.R365H	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	
DDX5	1655	genome.wustl.edu	37	17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62496266	62496266	G	-	DEL	DDX5	NM_004396	human	genbank	57_37b	-1	validated	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_P68HR	(deletion:cds_exon[62496041,62496444])	no_errors
DDX5	1655	genome.wustl.edu	37	17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62496266	62496266	G	-	DEL	DDX5	NM_004396	human	genbank	57_37b	-1	validated	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_P68HR	(deletion:cds_exon[62496041,62496444])	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117651408	117651408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117651408	117651408	G	A	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	missense	c.344	p.A115V	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
ENPEP	2028	genome.wustl.edu	37	4	111469355	111469355	+	Missense_Mutation	SNP	T	T	G	rs71603079	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	111469355	111469355	T	G	SNP	ENPEP	NM_001977	human	genbank	57_37b	+1	validated	missense	c.2024	p.V675G	0.000	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	
ENSG00000212228	0	genome.wustl.edu	37	16	11367988	11367988	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11367988	11367988	G	A	SNP	ENSG00000212228	ENST00000390926	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.223	-	-	-	no_errors
ETAA1	54465	genome.wustl.edu	37	2	67631500	67631500	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	67631500	67631500	T	C	SNP	ETAA1	NM_019002	human	genbank	57_37b	+1	validated	silent	c.1686	p.V562	0.000	NULL	NULL	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152188277	152188277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152188277	152188277	G	T	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	missense	c.5828	p.S1943Y	0.001	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
KDM5C	8242	genome.wustl.edu	37	X	53247017	53247017	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53247017	53247017	A	C	SNP	KDM5C	NM_004187	human	genbank	57_37b	-1	reviewed	silent	c.483	p.V161	1.000	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors
KRT36	8689	genome.wustl.edu	37	17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39645738	39645738	C	A	SNP	KRT36	NM_003771	human	genbank	57_37b	-1	reviewed	nonsense	c.379	p.E127*	0.939	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
KRT36	8689	genome.wustl.edu	37	17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39645738	39645738	C	A	SNP	KRT36	NM_003771	human	genbank	57_37b	-1	reviewed	nonsense	c.379	p.E127*	0.939	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
LOC100289633	0	genome.wustl.edu	37	11	32452241	32452241	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32452241	32452241	C	-	DEL	LOC100289633	XM_002343055	human	genbank	57_37b	+1	model	frame_shift_del	c.226	p.V77fs	0.002	NULL	NULL	(deletion:cds_exon[32452070,32452264])	no_errors
LOC653269	653269	genome.wustl.edu	37	2	131266746	131266746	+	Silent	SNP	C	C	T	rs62163654	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	131266746	131266746	C	T	SNP	LOC653269	XM_928585	human	genbank	57_37b	-1	model	silent	c.63	p.R21	0.006	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	
NOTCH4	4855	genome.wustl.edu	37	6	32191658	32191659	+	In_Frame_Ins	INS	-	-	AGCAGC	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32191658	32191659	-	AGCAGC	INS	NOTCH4	NM_004557	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.48_47	p.17in_frame_insLL	0.002:0.003	NULL	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
OSBPL8	114882	genome.wustl.edu	37	12	76793679	76793679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76793679	76793679	C	T	SNP	OSBPL8	NM_020841	human	genbank	57_37b	-1	reviewed	missense	c.442	p.V148I	1.000	superfamily_PH domain-like	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91873568	91873568	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	91873568	91873568	C	G	SNP	PCDH11X	NM_032968	human	genbank	57_37b	+1	reviewed	missense	c.3673	p.L1225V	0.822	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178921553	178921553	T	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1035	p.N345K	1.000	HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIPSL	266971	genome.wustl.edu	37	10	95720929	95720929	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95720929	95720929	C	A	SNP	PIPSL	ENST00000340582	human	ensembl	57_37b	-1	known	silent	c.225	p.L75	1.000	superfamily_SSF56104,HMMSmart_PIPKc	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_UIM	-	no_errors
RAD54B	25788	genome.wustl.edu	37	8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95384609	95384609	G	T	SNP	RAD54B	NM_012415	human	genbank	57_37b	-1	reviewed	nonsense	c.2522	p.S841*	0.992	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
RAD54B	25788	genome.wustl.edu	37	8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95384609	95384609	G	T	SNP	RAD54B	NM_012415	human	genbank	57_37b	-1	reviewed	nonsense	c.2522	p.S841*	0.992	NULL	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
RGL2	5863	genome.wustl.edu	37	6	33260312	33260312	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33260312	33260312	G	C	SNP	RGL2	NM_004761	human	genbank	57_37b	-1	validated	missense	c.2017	p.Q673E	1.000	superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF,superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
RPN1	6184	genome.wustl.edu	37	3	128356884	128356884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128356884	128356884	C	T	SNP	RPN1	NM_002950	human	genbank	57_37b	-1	reviewed	missense	c.391	p.V131M	0.825	HMMPfam_Ribophorin_I	HMMPfam_Ribophorin_I	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36171704	36171705	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36171704	36171705	-	TA	INS	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.861_860	p.L288fs	1.000:1.000	NULL	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors
SEPSECS	51091	genome.wustl.edu	37	4	25125665	25125665	+	Missense_Mutation	SNP	C	C	T	rs115959591	by1000genomes	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	25125665	25125665	C	T	SNP	SEPSECS	NM_016955	human	genbank	57_37b	-1	validated	missense	c.1157	p.R386Q	0.463	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_SLA_LP_auto_ag,PatternScan_PEROXIDASE_1	-	
SNHG10	283596	genome.wustl.edu	37	14	95999654	95999654	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95999654	95999654	T	C	SNP	SNHG10	NR_003138	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
SNORD14C	0	genome.wustl.edu	37	11	122930108	122930109	+	RNA	INS	-	-	TG	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122930108	122930109	-	TG	INS	SNORD14C	NR_001453	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.140:0.130	-	-	-	no_errors
TANC1	85461	genome.wustl.edu	37	2	160031601	160031601	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160031601	160031601	A	G	SNP	TANC1	NM_033394	human	genbank	57_37b	+1	validated	silent	c.1641	p.Q547	0.995	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors
TESC	54997	genome.wustl.edu	37	12	117494613	117494613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117494613	117494613	G	A	SNP	TESC	NM_017899	human	genbank	57_37b	-1	validated	silent	c.366	p.N122	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
TEX19	0	genome.wustl.edu	37	17	80320077	80320077	+	Silent	SNP	C	C	G	rs11557867	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80320077	80320077	C	G	SNP	TEX19	NM_207459	human	genbank	57_37b	+1	provisional	silent	c.51	p.L17	0.015	NULL	NULL	-	
TSC1	7248	genome.wustl.edu	37	9	135797350	135797350	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135797350	135797350	C	T	SNP	TSC1	NM_000368	human	genbank	57_37b	-1	reviewed	silent	c.519	p.A173	0.856	HMMPfam_Hamartin	HMMPfam_Hamartin	-	no_errors
