Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCB7	22	genome.wustl.edu	37	X	74296386	74296386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	74296386	74296386	G	A	SNP	ABCB7	NM_004299	human	genbank	57_37b	-1	reviewed	missense	c.560	p.A187V	1.000	superfamily_ABC_TM_1,HMMPfam_ABC_membrane	superfamily_ABC_TM_1,HMMPfam_ABC_membrane,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ADCY8	114	genome.wustl.edu	37	8	131826458	131826458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	131826458	131826458	G	A	SNP	ADCY8	NM_001115	human	genbank	57_37b	-1	reviewed	missense	c.2770	p.R924C	1.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
ANAPC5	51433	genome.wustl.edu	37	12	121775176	121775176	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121775176	121775176	T	A	SNP	ANAPC5	NM_016237	human	genbank	57_37b	-1	reviewed	missense	c.677	p.D226V	1.000	NULL	superfamily_TPR-like,HMMSmart_SM00028	-	no_errors
ANKRD50	57182	genome.wustl.edu	37	4	125593120	125593120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	125593120	125593120	T	C	SNP	ANKRD50	NM_020337	human	genbank	57_37b	-1	validated	missense	c.1312	p.M438V	0.998	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
ARHGAP6	395	genome.wustl.edu	37	X	11162155	11162155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	11162155	11162155	G	A	SNP	ARHGAP6	NM_013427	human	genbank	57_37b	-1	reviewed	silent	c.2121	p.G707	1.000	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ARHGEF9	23229	genome.wustl.edu	37	X	62917109	62917109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	62917109	62917109	C	T	SNP	ARHGEF9	NM_015185	human	genbank	57_37b	-1	validated	missense	c.457	p.E153K	1.000	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF	PatternScan_DH_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
CARD9	64170	genome.wustl.edu	37	9	139266463	139266463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139266463	139266463	G	A	SNP	CARD9	NM_052813	human	genbank	57_37b	-1	validated	missense	c.68	p.S23L	0.765	superfamily_DEATH domain,HMMPfam_CARD	superfamily_DEATH domain,HMMPfam_CARD	-	no_errors
CCR1	1230	genome.wustl.edu	37	3	46244889	46244889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46244889	46244889	C	T	SNP	CCR1	NM_001295	human	genbank	57_37b	-1	reviewed	missense	c.916	p.E306K	0.988	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CD97	976	genome.wustl.edu	37	19	14517708	14517708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14517708	14517708	G	A	SNP	CD97	NM_078481	human	genbank	57_37b	+1	reviewed	missense	c.2143	p.V715I	0.975	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CDC37L1	55664	genome.wustl.edu	37	9	4697194	4697194	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	4697194	4697194	C	T	SNP	CDC37L1	NM_017913	human	genbank	57_37b	+1	validated	missense	c.607	p.H203Y	1.000	HMMPfam_CDC37_M,superfamily_SSF101391	HMMPfam_CDC37_N,HMMPfam_CDC37_M,superfamily_SSF101391	-	no_errors
CHD1	1105	genome.wustl.edu	37	5	98235337	98235337	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	98235337	98235337	T	C	SNP	CHD1	NM_001270	human	genbank	57_37b	-1	reviewed	missense	c.932	p.K311R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Chromo domain-like,HMMSmart_SM00298	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors
CLDN5	7122	genome.wustl.edu	37	22	19511619	19511619	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19511619	19511619	A	G	SNP	CLDN5	NM_001130861	human	genbank	57_37b	-1	reviewed	missense	c.415	p.C139R	1.000	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
COL12A1	1303	genome.wustl.edu	37	6	75834939	75834939	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	75834939	75834939	A	C	SNP	COL12A1	NM_004370	human	genbank	57_37b	-1	reviewed	missense	c.6511	p.L2171V	0.268	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors
DDX27	55661	genome.wustl.edu	37	20	47855789	47855789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47855789	47855789	G	A	SNP	DDX27	NM_017895	human	genbank	57_37b	+1	reviewed	missense	c.1904	p.R635Q	0.895	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
ENSG00000244995	0	genome.wustl.edu	37	17	27901537	27901537	+	RNA	SNP	C	C	A	rs76884784	byFrequency;by1000genomes	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27901537	27901537	C	A	SNP	ENSG00000244995	ENST00000499995	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	
GHITM	27069	genome.wustl.edu	37	10	85902493	85902493	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85902493	85902493	T	C	SNP	GHITM	NM_014394	human	genbank	57_37b	+1	validated	missense	c.212	p.M71T	0.103	NULL	HMMPfam_UPF0005	-	no_errors
GNAI2	2771	genome.wustl.edu	37	3	50273876	50273876	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50273876	50273876	C	A	SNP	GNAI2	NM_002070	human	genbank	57_37b	+1	reviewed	missense	c.109	p.L37M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152185679	152185679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152185679	152185679	C	A	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	missense	c.8426	p.G2809V	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
ILVBL	10994	genome.wustl.edu	37	19	15227121	15227121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15227121	15227121	G	A	SNP	ILVBL	NM_006844	human	genbank	57_37b	-1	reviewed	missense	c.1313	p.A438V	0.000	superfamily_DHS-like NAD/FAD-binding domain	HMMPfam_TPP_enzyme_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding),superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_TPP_enzyme_M,HMMPfam_TPP_enzyme_C,PatternScan_TPP_ENZYMES	-	no_errors
KCNQ5	56479	genome.wustl.edu	37	6	73787062	73787062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	73787062	73787062	G	A	SNP	KCNQ5	NM_019842	human	genbank	57_37b	+1	reviewed	missense	c.634	p.A212T	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
KDM6A	7403	genome.wustl.edu	37	X	44894229	44894232	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	44894229	44894232	AAGT	-	DEL	KDM6A	NM_021140	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.618_619	p.E206fs	1.000:1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	(deletion:cds_exon[44894176,44894230], intron[44894231,44896899])	no_errors
KDM6A	7403	genome.wustl.edu	37	X	44894229	44894232	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	44894229	44894232	AAGT	-	DEL	KDM6A	NM_021140	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.618_619	p.E206fs	1.000:1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	(deletion:cds_exon[44894176,44894230], intron[44894231,44896899])	no_errors
L3MBTL2	83746	genome.wustl.edu	37	22	41605850	41605850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41605850	41605850	C	T	SNP	L3MBTL2	NM_031488	human	genbank	57_37b	+1	validated	missense	c.175	p.R59W	0.973	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60912928	60912928	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60912928	60912928	C	T	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.1958	p.R653H	0.026	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
LAMB4	22798	genome.wustl.edu	37	7	107688451	107688451	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107688451	107688451	C	T	SNP	LAMB4	NM_007356	human	genbank	57_37b	-1	validated	missense	c.4228	p.G1410S	0.214	NULL	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
LOC100131482	0	genome.wustl.edu	37	2	180679175	180679175	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	180679175	180679175	A	T	SNP	LOC100131482	XM_001722616	human	genbank	57_37b	+1	model	silent	c.198	p.V66	1.000	superfamily_Thioredoxin-like,HMMPfam_DIM1	superfamily_Thioredoxin-like,HMMPfam_DIM1	-	no_errors
LTBP1	4052	genome.wustl.edu	37	2	33500981	33500981	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	33500981	33500981	C	G	SNP	LTBP1	NM_206943	human	genbank	57_37b	+1	reviewed	missense	c.2986	p.R996G	0.116	HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
MCART6	401612	genome.wustl.edu	37	X	103349780	103349780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103349780	103349780	C	T	SNP	MCART6	NM_001012755	human	genbank	57_37b	-1	validated	missense	c.161	p.R54Q	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1155537	1155537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1155537	1155537	G	A	SNP	MUC5B	ENST00000406844	human	ensembl	57_37b	+1	known	silent	c.225	p.A75	0.000	HMMSmart_SM00216	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot	-	no_errors
MYL12A	10627	genome.wustl.edu	37	18	3253901	3253901	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	3253901	3253901	G	A	SNP	MYL12A	NM_006471	human	genbank	57_37b	+1	provisional	missense	c.196	p.D66N	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
MYL12A	10627	genome.wustl.edu	37	18	3254033	3254033	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	3254033	3254033	G	C	SNP	MYL12A	NM_006471	human	genbank	57_37b	+1	provisional	missense	c.328	p.D110H	1.000	HMMSmart_SM00054,superfamily_EF-hand	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
NDUFA1	4694	genome.wustl.edu	37	X	119005892	119005892	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119005892	119005892	C	T	SNP	NDUFA1	NM_004541	human	genbank	57_37b	+1	reviewed	silent	c.18	p.L6	0.799	NULL	NULL	-	no_errors
NUDT7	0	genome.wustl.edu	37	16	77759477	77759477	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77759477	77759477	A	G	SNP	NUDT7	NM_001105663	human	genbank	57_37b	+1	reviewed	missense	c.185	p.E62G	1.000	superfamily_NUDIX_hydrolase,HMMPfam_NUDIX,PatternScan_UPF0035	PatternScan_NUDIX,superfamily_NUDIX_hydrolase,HMMPfam_NUDIX,PatternScan_UPF0035	-	no_errors
OR4C15	81309	genome.wustl.edu	37	11	55322145	55322145	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55322145	55322145	C	T	SNP	OR4C15	NM_001001920	human	genbank	57_37b	+1	provisional	silent	c.363	p.F121	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,PatternScan_LECTIN_LEGUME_ALPHA,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCDH17	27253	genome.wustl.edu	37	13	58208939	58208939	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	58208939	58208939	T	A	SNP	PCDH17	NM_001040429	human	genbank	57_37b	+1	reviewed	silent	c.2259	p.G753	1.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PDXDC1	23042	genome.wustl.edu	37	16	15100357	15100357	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15100357	15100357	T	C	SNP	PDXDC1	NM_015027	human	genbank	57_37b	+1	validated	missense	c.496	p.F166L	0.998	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PNLIPRP1	5407	genome.wustl.edu	37	10	118357676	118357676	+	Missense_Mutation	SNP	C	C	T	rs2305205	byCluster;byFrequency;by1000genomes	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118357676	118357676	C	T	SNP	PNLIPRP1	NM_006229	human	genbank	57_37b	+1	provisional	missense	c.812	p.A271V	0.007	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	
POLE	5426	genome.wustl.edu	37	12	133253205	133253205	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133253205	133253205	G	T	SNP	POLE	NM_006231	human	genbank	57_37b	-1	validated	missense	c.836	p.T279N	1.000	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors
PTCHD1	139411	genome.wustl.edu	37	X	23353126	23353126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23353126	23353126	G	A	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	missense	c.134	p.R45H	1.000	NULL	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors
SEC16B	89866	genome.wustl.edu	37	1	177911130	177911130	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	177911130	177911130	C	T	SNP	SEC16B	NM_033127	human	genbank	57_37b	-1	validated	missense	c.1927	p.V643M	0.015	NULL	PatternScan_PHOSPHOPANTETHEINE	-	no_errors
SLITRK6	84189	genome.wustl.edu	37	13	86369908	86369908	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	86369908	86369908	C	A	SNP	SLITRK6	NM_032229	human	genbank	57_37b	-1	validated	missense	c.736	p.V246F	1.000	superfamily_L domain-like,HMMSmart_SM00082,HMMPfam_LRRCT	superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors
SNTB1	6641	genome.wustl.edu	37	8	121823729	121823729	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121823729	121823729	C	G	SNP	SNTB1	NM_021021	human	genbank	57_37b	-1	reviewed	missense	c.355	p.E119Q	1.000	HMMSmart_SM00233,superfamily_PH domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ	HMMSmart_SM00233,superfamily_PH domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_PH	-	no_errors
SOLH	6650	genome.wustl.edu	37	16	602313	602313	+	Silent	SNP	C	C	A	rs9930550	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-11A-13D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	602313	602313	C	A	SNP	SOLH	NM_005632	human	genbank	57_37b	+1	reviewed	silent	c.2520	p.A840	0.000	NULL	superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_zf-RanBP,superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS	-	
SPTLC2	9517	genome.wustl.edu	37	14	78043232	78043232	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	78043232	78043232	A	C	SNP	SPTLC2	NM_004863	human	genbank	57_37b	-1	validated	missense	c.509	p.V170G	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577081	7577081	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577081	7577081	T	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.857	p.E286A	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179463325	179463325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179463325	179463325	G	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.49309	p.L16437M	0.548	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
VWA5B1	127731	genome.wustl.edu	37	1	20656786	20656786	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	20656786	20656786	C	G	SNP	VWA5B1	NM_001039500	human	genbank	57_37b	+1	validated	missense	c.1368	p.H456Q	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	-	no_errors
ZNF320	162967	genome.wustl.edu	37	19	53384563	53384563	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0DL-01A-11D-A10Y-09	TCGA-BH-A0DL-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53384563	53384563	A	G	SNP	ZNF320	NM_207333	human	genbank	57_37b	-1	validated	silent	c.816	p.P272	0.441	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
