Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
CBFB	865	genome.wustl.edu	37	16	67100613	67100613	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67100613	67100613	A	G	SNP	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	missense	c.311	p.N104S	1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	-	no_errors
CD93	22918	genome.wustl.edu	37	20	23066476	23066476	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23066476	23066476	G	A	SNP	CD93	NM_012072	human	genbank	57_37b	-1	reviewed	silent	c.354	p.G118	0.557	HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C	PatternScan_C_TYPE_LECTIN_1,HMMSmart_CLECT,superfamily_C-type_lectin_fold,HMMPfam_Lectin_C,HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
CLEC4A	50856	genome.wustl.edu	37	12	8290866	8290866	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8290866	8290866	A	T	SNP	CLEC4A	NM_016184	human	genbank	57_37b	+1	reviewed	missense	c.697	p.M233L	0.169	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CLEC4C	170482	genome.wustl.edu	37	12	7890152	7890152	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7890152	7890152	G	T	SNP	CLEC4C	NM_130441	human	genbank	57_37b	-1	reviewed	missense	c.254	p.T85N	0.001	superfamily_C-type lectin-like,HMMSmart_SM00034	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121238949	121238949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121238949	121238949	G	A	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	missense	c.1948	p.D650N	0.968	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
EIF2AK1	27102	genome.wustl.edu	37	7	6085747	6085747	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6085747	6085747	T	A	SNP	EIF2AK1	NM_014413	human	genbank	57_37b	-1	reviewed	silent	c.585	p.I195	0.999	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ENSG00000246861	0	genome.wustl.edu	37	20	17923089	17923089	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17923089	17923089	T	C	SNP	ENSG00000246861	ENST00000499129	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors
GPR162	27239	genome.wustl.edu	37	12	6936041	6936041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6936041	6936041	G	A	SNP	GPR162	NM_019858	human	genbank	57_37b	+1	reviewed	missense	c.1439	p.R480H	0.674	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
KNDC1	85442	genome.wustl.edu	37	10	135012162	135012162	+	Missense_Mutation	SNP	T	T	C	rs2998139	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135012162	135012162	T	C	SNP	KNDC1	NM_152643	human	genbank	57_37b	+1	validated	missense	c.2150	p.L717P	0.001	NULL	HMMSmart_SM00750,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF	-	
LOC100288650	0	genome.wustl.edu	37	16	28935782	28935782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28935782	28935782	C	T	SNP	LOC100288650	XM_002343464	human	genbank	57_37b	+1	model	missense	c.286	p.H96Y	1.000	NULL	NULL	-	no_errors
NEU4	129807	genome.wustl.edu	37	2	242758203	242758203	+	Silent	SNP	T	T	C	rs2293763	byCluster;by1000genomes	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242758203	242758203	T	C	SNP	NEU4	NM_080741	human	genbank	57_37b	+1	reviewed	silent	c.1320	p.A440	0.000	superfamily_Sialidase	superfamily_Sialidase	-	
PDZD2	23037	genome.wustl.edu	37	5	31799548	31799548	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	31799548	31799548	G	A	SNP	PDZD2	NM_178140	human	genbank	57_37b	+1	reviewed	missense	c.193	p.E65K	0.856	superfamily_PDZ domain-like	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PKD2L2	27039	genome.wustl.edu	37	5	137244512	137244512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137244512	137244512	G	A	SNP	PKD2L2	NM_014386	human	genbank	57_37b	+1	validated	missense	c.1205	p.R402H	1.000	HMMPfam_PKD_channel	HMMPfam_PKD_channel	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48839867	48839867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48839867	48839867	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	57_37b	-1	known	missense	c.2306	p.G769D	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
PTH2	113091	genome.wustl.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49926533	49926533	G	C	SNP	PTH2	NM_178449	human	genbank	57_37b	-1	validated	missense	c.64	p.L22V	0.132	NULL	NULL	-	no_errors
PTPN4	5775	genome.wustl.edu	37	2	120725478	120725478	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	120725478	120725478	A	G	SNP	PTPN4	NM_002830	human	genbank	57_37b	+1	reviewed	missense	c.2624	p.N875S	1.000	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PTPRU	10076	genome.wustl.edu	37	1	29630376	29630376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29630376	29630376	G	A	SNP	PTPRU	NM_005704	human	genbank	57_37b	+1	reviewed	missense	c.2516	p.R839H	1.000	NULL	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RTTN	25914	genome.wustl.edu	37	18	67727270	67727270	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	67727270	67727270	C	A	SNP	RTTN	NM_173630	human	genbank	57_37b	-1	validated	nonsense	c.4756	p.E1586*	0.286	NULL	superfamily_ARM repeat	-	no_errors
SDK2	54549	genome.wustl.edu	37	17	71394498	71394498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	71394498	71394498	G	A	SNP	SDK2	NM_001144952	human	genbank	57_37b	-1	provisional	missense	c.3164	p.S1055F	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
TC2N	123036	genome.wustl.edu	37	14	92278710	92278710	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92278710	92278710	A	G	SNP	TC2N	NM_001128595	human	genbank	57_37b	-1	validated	missense	c.247	p.S83P	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
TSHZ3	57616	genome.wustl.edu	37	19	31767562	31767562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31767562	31767562	C	T	SNP	TSHZ3	NM_020856	human	genbank	57_37b	-1	validated	missense	c.3137	p.C1046Y	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
TXNDC15	79770	genome.wustl.edu	37	5	134210139	134210139	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	134210139	134210139	C	T	SNP	TXNDC15	NM_024715	human	genbank	57_37b	+1	validated	nonsense	c.22	p.R8*	0.001	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	-	no_errors
XPO5	57510	genome.wustl.edu	37	6	43538686	43538686	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43538686	43538686	G	C	SNP	XPO5	NM_020750	human	genbank	57_37b	-1	validated	missense	c.346	p.L116V	0.508	superfamily_ARM repeat,HMMPfam_Xpo1	superfamily_ARM repeat,HMMPfam_Xpo1	-	no_errors
ZNF425	155054	genome.wustl.edu	37	7	148801590	148801590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148801590	148801590	C	T	SNP	ZNF425	NM_001001661	human	genbank	57_37b	-1	provisional	missense	c.1373	p.R458H	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF598	90850	genome.wustl.edu	37	16	2049640	2049640	+	Missense_Mutation	SNP	A	A	G	rs2286469	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0EA-01A-11D-A10Y-09	TCGA-BH-A0EA-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2049640	2049640	A	G	SNP	ZNF598	ENST00000431526	human	ensembl	57_37b	-1	known	missense	c.1910	p.M637T	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
