Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ARID4A	5926	genome.wustl.edu	37	14	58830978	58830978	+	Missense_Mutation	SNP	A	A	G	rs2230098	byCluster;byFrequency;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58830978	58830978	A	G	SNP	ARID4A	NM_002892	human	genbank	57_37b	+1	reviewed	missense	c.2171	p.N724S	0.578	NULL	HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,HMMSmart_SM00298	-	
C22orf27	150291	genome.wustl.edu	37	22	31321948	31321948	+	RNA	SNP	G	A	A	rs2240176	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31321948	31321948	G	A	SNP	C22orf27	NR_026920	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.004	-	-	-	
C6orf132	647024	genome.wustl.edu	37	6	42072710	42072715	+	In_Frame_Del	DEL	CTCCTC	CTCCTC	-	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	CTCCTC	CTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42072710	42072715	CTCCTC	-	DEL	C6orf132	ENST00000341865	human	ensembl	57_37b	-1	known	in_frame_del	c.2940_2935	p.EE979in_frame_del	0.995:0.998:0.998:0.989:0.987:0.736	NULL	NULL	(deletion:cds_exon[42072201,42075321])	no_errors
CATSPER2	117155	genome.wustl.edu	37	15	43939311	43939311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43939311	43939311	G	C	SNP	CATSPER2	NM_172095	human	genbank	57_37b	-1	reviewed	missense	c.325	p.L109V	0.977	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
COQ9	57017	genome.wustl.edu	37	16	57493549	57493549	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57493549	57493549	T	-	DEL	COQ9	NM_020312	human	genbank	57_37b	+1	provisional	frame_shift_del	c.784	p.S262fs	1.000	HMMPfam_COQ9	HMMPfam_COQ9	(deletion:cds_exon[57493477,57493632])	no_errors
CP	1356	genome.wustl.edu	37	3	148930395	148930395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	148930395	148930395	G	A	SNP	CP	NM_000096	human	genbank	57_37b	-1	reviewed	silent	c.237	p.T79	0.298	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors
ELAC2	60528	genome.wustl.edu	37	17	12901771	12901771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12901771	12901771	G	A	SNP	ELAC2	NM_018127	human	genbank	57_37b	-1	reviewed	missense	c.1478	p.P493L	0.999	superfamily_Metallo-hydrolase/oxidoreductase	superfamily_Metallo-hydrolase/oxidoreductase,HMMPfam_Lactamase_B	-	no_errors
ELK3	2004	genome.wustl.edu	37	12	96653588	96653588	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	96653588	96653588	C	A	SNP	ELK3	NM_005230	human	genbank	57_37b	+1	reviewed	missense	c.1082	p.P361Q	1.000	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
ENSG00000228775	0	genome.wustl.edu	37	7	141427142	141427142	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141427142	141427142	A	T	SNP	ENSG00000228775	ENST00000454436	human	ensembl	57_37b	-1	known	missense	c.194	p.L65Q	0.315	NULL	NULL	-	no_errors
ENSG00000246262	0	genome.wustl.edu	37	19	21909348	21909352	+	RNA	DEL	TTATC	TTATC	-	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	TTATC	TTATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	21909348	21909352	TTATC	-	DEL	ENSG00000246262	ENST00000499210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.623:0.581:0.553:0.622:0.624	-	-	(deletion:rna[21906848,21910022])	no_errors
ENSG00000247418	0	genome.wustl.edu	37	19	14626433	14626433	+	RNA	SNP	T	G	G	rs8496	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14626433	14626433	T	G	SNP	ENSG00000247418	ENST00000500959	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.250	-	-	-	
FLJ46026	400627	genome.wustl.edu	37	17	471903	471903	+	RNA	SNP	G	C	C	rs2165843	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	471903	471903	G	C	SNP	FLJ46026	XR_041189	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.002	-	-	-	
FSTL4	23105	genome.wustl.edu	37	5	132585181	132585181	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132585181	132585181	A	T	SNP	FSTL4	NM_015082	human	genbank	57_37b	-1	validated	missense	c.815	p.V272D	0.994	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_EF-hand,PatternScan_EF_HAND_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors
KCNK4	50801	genome.wustl.edu	37	11	64064601	64064601	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64064601	64064601	T	A	SNP	KCNK4	NM_033310	human	genbank	57_37b	+1	reviewed	missense	c.324	p.N108K	0.981	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors
LMO7	4008	genome.wustl.edu	37	13	76370783	76370783	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	76370783	76370783	A	G	SNP	LMO7	NM_005358	human	genbank	57_37b	+1	reviewed	silent	c.516	p.T172	0.317	superfamily_Calponin-homology,HMMSmart_CH,HMMPfam_CH	superfamily_Calponin-homology,HMMSmart_CH,HMMPfam_CH,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LOC100291056	0	genome.wustl.edu	37	14	53806803	53806803	+	Nonstop_Mutation	SNP	A	A	G	rs7152983	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53806803	53806803	A	G	SNP	LOC100291056	XM_002347486	human	genbank	57_37b	-1	model	nonstop	c.109	p.*37Q	0.005	NULL	NULL	-	
LRCH1	23143	genome.wustl.edu	37	13	47279264	47279264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	47279264	47279264	G	A	SNP	LRCH1	NM_015116	human	genbank	57_37b	+1	validated	missense	c.1462	p.A488T	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,PatternScan_PTS_HPR_SER,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors
MMRN2	79812	genome.wustl.edu	37	10	88703812	88703812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	88703812	88703812	G	A	SNP	MMRN2	NM_024756	human	genbank	57_37b	-1	validated	silent	c.729	p.P243	1.000	NULL	HMMPfam_EMI,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
MYH7B	57644	genome.wustl.edu	37	20	33568852	33568852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33568852	33568852	C	T	SNP	MYH7B	NM_020884	human	genbank	57_37b	+1	validated	silent	c.642	p.S214	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,PatternScan_THIOL_PROTEASE_HIS,superfamily_tRNA-binding arm,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors
PDE2A	5138	genome.wustl.edu	37	11	72290428	72290428	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72290428	72290428	C	G	SNP	PDE2A	NM_002599	human	genbank	57_37b	-1	validated	splice_site	c.2257-1	e27-1	1.000	-	-	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RERE	473	genome.wustl.edu	37	1	8421203	8421203	+	Silent	SNP	T	C	C	rs13596	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8421203	8421203	T	C	SNP	RERE	NM_001042681	human	genbank	57_37b	-1	reviewed	silent	c.2364	p.P788	0.002	HMMPfam_Atrophin-1	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_GATA,HMMPfam_Atrophin-1	-	
RFPL1S	10740	genome.wustl.edu	37	22	29837198	29837199	+	RNA	INS	-	-	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29837198	29837199	-	A	INS	RFPL1S	NR_002727	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.015:0.012	-	-	-	no_errors
SCN2A	6326	genome.wustl.edu	37	2	166245338	166245338	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166245338	166245338	C	T	SNP	SCN2A	NM_001040142	human	genbank	57_37b	+1	reviewed	silent	c.5022	p.Y1674	0.954	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
TMEM120B	0	genome.wustl.edu	37	12	122212588	122212588	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122212588	122212588	G	A	SNP	TMEM120B	NM_001080825	human	genbank	57_37b	+1	validated	missense	c.797	p.R266Q	1.000	HMMPfam_TMPIT	HMMPfam_TMPIT	-	no_errors
UBAP2L	9898	genome.wustl.edu	37	1	154233514	154233514	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154233514	154233514	A	C	SNP	UBAP2L	NM_014847	human	genbank	57_37b	+1	validated	missense	c.2725	p.T909P	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
ZKSCAN1	7586	genome.wustl.edu	37	7	99631717	99631717	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0W3-01A-11D-A10G-09	TCGA-BH-A0W3-10A-01X-A10H-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99631717	99631717	C	G	SNP	ZKSCAN1	NM_003439	human	genbank	57_37b	+1	validated	missense	c.1589	p.S530C	0.227	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
