Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MIB2	142678	genome.wustl.edu	37	1	1559166	1559166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080875.2	+1	validated	p.P145L	1.000	4	0.000	8	1.000	7	100%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_ZZ,HMMSmart_SM00291
CAMTA1	23261	genome.wustl.edu	37	1	7797624	7797624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.N1218D	1.000	24	0%	35	74.3%	1	100%	probably_damaging(0.976)	tolerated(0.25)	neutral(0.455)	superfamily_Ankyrin repeat
MST1P9	11223	genome.wustl.edu	37	1	17086085	17086086	+	RNA	INS	-	-	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002729.2	-1	validated	NULL	0.998:0.997	-	-	-	-	-	-	-	-	-	-
TAS1R2	80834	genome.wustl.edu	37	1	19166892	19166892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.A574D	0.005	12	0%	30	33.3%	0	-	benign(0.208)	deleterious(0)	neutral(0.465)	HMMPfam_7tm_3
AHDC1	27245	genome.wustl.edu	37	1	27877168	27877168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029882.2	-1	validated	p.R487W	0.923	4	0.000	26	0.385	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFYC	4802	genome.wustl.edu	37	1	41218846	41218846	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440226	+1	known	p.Y8H	0.999	186	0%	338	34%	22	36.3%	-	-	-	NULL
CYP4B1	1580	genome.wustl.edu	37	1	47264759	47264759	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099772.1	+1	reviewed	p.V2	0.000	46	0%	229	63.3%	0	-	-	-	-	NULL
STIL	6491	genome.wustl.edu	37	1	47725965	47725965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.A1026T	1.000	344	0.3%	223	63.2%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOCK7	85440	genome.wustl.edu	37	1	63100574	63100574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	p.F302S	1.000	88	0%	130	17.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LEPR	3953	genome.wustl.edu	37	1	66070765	66070765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002303.4	+1	reviewed	p.S483Y	0.048	267	0%	477	27%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Fibronectin type III
PKN2	5586	genome.wustl.edu	37	1	89236088	89236088	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006256.2	+1	validated	p.K186	1.000	66	0%	236	64.4%	0	-	-	-	-	HMMPfam_HR1,HMMSmart_Hr1,superfamily_PKN_effector
COL11A1	1301	genome.wustl.edu	37	1	103540202	103540202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.T208K	1.000	368	0.5%	453	57.8%	0	-	unknown(0)	deleterious(0.03)	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
NTNG1	22854	genome.wustl.edu	37	1	108023295	108023295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113226.1	+1	validated	p.R485C	1.000	7	0.000	15	0.467	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin
FAM46C	54855	genome.wustl.edu	37	1	118165695	118165695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017709.3	+1	validated	p.V69I	1.000	24	0%	98	18.4%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_DUF1693
CTSK	1513	genome.wustl.edu	37	1	150772178	150772179	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000396.2	-1	reviewed	p.S209fs	0.005:0.440	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
OR10K1	391109	genome.wustl.edu	37	1	158436062	158436062	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004473.1	+1	provisional	p.T237	0.997	77	0%	246	26%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MNDA	4332	genome.wustl.edu	37	1	158815582	158815582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.K259R	0.000	130	0%	224	67.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_HIN
LY9	4063	genome.wustl.edu	37	1	160784477	160784477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002348.2	+1	validated	p.G333D	0.137	10	0%	59	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00409,superfamily_Immunoglobulin
CD247	919	genome.wustl.edu	37	1	167408593	167408593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198053.2	-1	reviewed	p.N69K	0.385	19	0%	62	64.5%	2	0%	benign(0.086)	tolerated(0.07)	neutral(0.326)	HMMPfam_ITAM,HMMSmart_SM00077
SELP	6403	genome.wustl.edu	37	1	169560664	169560664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003005.3	-1	reviewed	p.S813I	1.000	146	0%	165	30.3%	1	0%	possibly_damaging(0.855)	deleterious(0)	deleterious(0.774)	NULL
SCYL3	57147	genome.wustl.edu	37	1	169823890	169823890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181093.2	-1	validated	p.D564Y	0.000	117	0%	89	69.7%	1	100%	possibly_damaging(0.502)	deleterious(0.01)	deleterious(0.573)	NULL
CEP350	9857	genome.wustl.edu	37	1	179989165	179989165	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.A752	0.180	107	0%	260	70.4%	0	-	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	185992256	185992256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.T1907R	0.942	55	0%	150	32%	0	-	benign(0.335)	tolerated(0.47)	neutral(0.116)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186121942	186121942	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.L4986Q	0.998	153	0%	599	62.4%	0	-	possibly_damaging(0.8)	deleterious(0.02)	deleterious(0.684)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
ASPM	259266	genome.wustl.edu	37	1	197071035	197071035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.H2449R	0.000	91	0%	173	27.2%	3	33.3%	benign(0)	tolerated(0.24)	neutral(0.037)	superfamily_P-loop containing nucleoside triphosphate hydrolases
PCNXL2	80003	genome.wustl.edu	37	1	233395007	233395007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.Q201K	0.005	77	0%	313	26.8%	0	-	benign(0)	tolerated(1)	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237608716	237608716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.E396K	1.000	273	0%	344	31.1%	0	-	benign(0.15)	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815)
RYR2	6262	genome.wustl.edu	37	1	237993921	237993921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A4916D	1.000	142	0%	301	30.9%	0	-	probably_damaging(1)	-	-	NULL
GREM2	64388	genome.wustl.edu	37	1	240656392	240656392	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022469.3	-1	reviewed	p.V128	1.000	11	0%	42	16.7%	0	-	-	-	-	HMMPfam_DAN,HMMSmart_CT
OR2G3	81469	genome.wustl.edu	37	1	247769111	247769111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001914.1	+1	provisional	p.T75I	0.007	251	0%	623	31.1%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2M4	26245	genome.wustl.edu	37	1	248402864	248402864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017504.1	+1	provisional	p.S212T	0.000	145	0%	206	24.3%	0	-	benign(0.103)	tolerated(0.37)	neutral(0.027)	HMMPfam_7tm_1,superfamily_SSF81321
SNTG2	54221	genome.wustl.edu	37	2	1271240	1271240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018968.3	+1	reviewed	p.G394D	0.994	40	0%	157	24.2%	0	-	benign(0.012)	tolerated(0.61)	neutral(0.005)	NULL
SOX11	6664	genome.wustl.edu	37	2	5833011	5833011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003108.3	+1	reviewed	p.M53K	1.000	10	0%	56	17.9%	0	-	possibly_damaging(0.943)	deleterious(0)	deleterious(0.832)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
TRIB2	28951	genome.wustl.edu	37	2	12880966	12880966	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027303.1	+1	reviewed	NULL	1.000	38	0%	123	21.1%	1	0%	-	-	-	-
MATN3	4148	genome.wustl.edu	37	2	20200238	20200238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002381.4	-1	reviewed	p.G378S	1.000	69	0%	227	44.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
KLHL29	114818	genome.wustl.edu	37	2	23916358	23916358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000486442	+1	known	p.V501D	1.000	5	0.000	21	0.286	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_BACK
C2orf44	80304	genome.wustl.edu	37	2	24261057	24261059	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025203.2	-1	validated	p.E436in_frame_del	0.000:0.375:0.820	-	-	-	-	-	-	-	-	-	NULL
EFR3B	22979	genome.wustl.edu	37	2	25355863	25355863	+	Silent	SNP	G	G	A	rs137872758	by1000genomes	TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264719	+1	known	p.G293S	0.028	10	0%	29	44.8%	0	-	-	-	-	NULL
KIF3C	3797	genome.wustl.edu	37	2	26204163	26204163	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002254.6	-1	validated	p.H208	1.000	15	0%	106	22.6%	2	0%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNK3	3777	genome.wustl.edu	37	2	26950677	26950677	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002246.2	+1	reviewed	p.R142	0.718	11	0%	49	32.7%	1	100%	-	-	-	superfamily_Voltage-gated potassium channels
ATL2	64225	genome.wustl.edu	37	2	38570447	38570447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135673.1	-1	validated	p.F109S	1.000	80	0%	117	26.5%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
LOC728819	728819	genome.wustl.edu	37	2	43902644	43902644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101330.1	-1	provisional	p.I273T	0.921	174	0%	267	12.4%	0	-	-	-	-	NULL
SIX2	10736	genome.wustl.edu	37	2	45233417	45233417	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016932.4	-1	reviewed	p.P256	0.004	24	0%	173	26.6%	1	100%	-	-	-	NULL
VRK2	7444	genome.wustl.edu	37	2	58386545	58386545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130480.1	+1	reviewed	p.S415N	0.000	195	0%	208	16.8%	17	41.1%	possibly_damaging(0.49)	deleterious(0.01)	deleterious(0.569)	NULL
EHBP1	23301	genome.wustl.edu	37	2	63092038	63092038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015252.3	+1	reviewed	p.I345M	0.979	84	0%	77	44.2%	2	50%	benign(0.012)	deleterious(0.01)	neutral(0.406)	NULL
CEP68	23177	genome.wustl.edu	37	2	65299326	65299326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015147.2	+1	validated	p.P366S	0.000	18	0%	118	22%	0	-	benign(0.024)	tolerated(0.22)	neutral(0.043)	NULL
DUSP11	8446	genome.wustl.edu	37	2	74002108	74002108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003584.2	-1	reviewed	p.R128*	0.031	350	0%	462	18.6%	7	0%	-	-	-	HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
LRRTM1	347730	genome.wustl.edu	37	2	80530670	80530670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178839.4	-1	validated	p.T92M	1.000	20	0%	163	20.2%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	HMMPfam_LRR_1,superfamily_SSF52058
POU3F3	5455	genome.wustl.edu	37	2	105473061	105473061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006236.1	+1	provisional	p.A365T	1.000	16	0%	59	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA
STEAP3	55240	genome.wustl.edu	37	2	120020909	120020909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182915.2	+1	validated	p.V498I	1.000	12	0%	54	33.3%	11	90.9%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128387255	128387255	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.L1528	0.970	16	0%	55	36.4%	1	100%	-	-	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
RAB3GAP1	22930	genome.wustl.edu	37	2	135891570	135891570	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012233.2	+1	reviewed	p.R489H	1.000	169	0%	297	52.2%	8	50%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
THSD7B	80731	genome.wustl.edu	37	2	138413145	138413145	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080427.1	+1	provisional	p.A1311	0.000	48	0%	273	44.3%	0	-	-	-	-	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NEB	4703	genome.wustl.edu	37	2	152352790	152352790	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397337	-1	known	p.R296Q	1.000	477	0%	594	45.1%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
BAZ2B	29994	genome.wustl.edu	37	2	160303448	160303448	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.V181L	1.000	282	0%	436	46.3%	0	-	benign(0.428)	deleterious(0.04)	deleterious(0.488)	NULL
SLC38A11	151258	genome.wustl.edu	37	2	165795975	165795975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173512.1	-1	provisional	p.I96M	1.000	223	0%	465	23.4%	0	-	benign(0.006)	tolerated(0.09)	neutral(0.296)	HMMPfam_Aa_trans
MYO3B	140469	genome.wustl.edu	37	2	171355137	171355137	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.P1017H	1.000	153	0%	359	20.3%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DLX1	1745	genome.wustl.edu	37	2	172952984	172952984	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178120.4	+1	reviewed	p.*256	1.000	7	0.000	59	0.542	0	-	-	-	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175337925	175337925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.G210R	1.000	147	0%	156	25.6%	0	-	possibly_damaging(0.749)	tolerated(0.68)	neutral(0.277)	HMMPfam_Mem_trans
TTN	7273	genome.wustl.edu	37	2	179431927	179431927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P23741L	1.000	74	0%	130	25.4%	0	-	probably_damaging(0.99)	-	-	HMMPfam_fn3,HMMSmart_SM00060
NCKAP1	10787	genome.wustl.edu	37	2	183829471	183829471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205842.1	-1	validated	p.Y571C	1.000	157	0%	356	18%	19	21%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_Nckap1
PLCL1	5334	genome.wustl.edu	37	2	198950518	198950518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.A661	0.428	83	0%	202	23.3%	1	0%	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
KCTD18	130535	genome.wustl.edu	37	2	201371659	201371659	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152387.2	-1	validated	p.R27	0.336	73	0%	180	25.6%	3	66.6%	-	-	-	HMMPfam_K_tetra,superfamily_POZ domain
FAM126B	285172	genome.wustl.edu	37	2	201846569	201846569	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173822.3	-1	validated	p.E339	1.000	71	0%	283	20.5%	0	-	-	-	-	NULL
ABCA12	26154	genome.wustl.edu	37	2	215880329	215880329	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.L614R	0.727	132	0%	295	47.5%	0	-	possibly_damaging(0.8)	tolerated(0.1)	deleterious(0.587)	NULL
SLC19A3	80704	genome.wustl.edu	37	2	228560726	228560726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025243.3	-1	reviewed	p.V351I	0.000	40	0%	133	21.1%	0	-	benign(0.001)	tolerated(0.95)	-	HMMPfam_Folate_carrier,superfamily_MFS_gen_substrate_transporter
SPHKAP	80309	genome.wustl.edu	37	2	228883643	228883643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142644.1	-1	validated	p.M643V	0.022	114	0%	317	39.4%	0	-	benign(0)	tolerated(1)	-	NULL
SPATA3	130560	genome.wustl.edu	37	2	231861184	231861184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139073.3	+1	validated	p.R79L	0.000	83	0%	534	49.1%	0	-	possibly_damaging(0.626)	tolerated(0.42)	neutral(0.232)	NULL
AGAP1	116987	genome.wustl.edu	37	2	237028991	237028991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.R757Q	1.000	4	0.000	23	0.522	2	50%	benign(0.359)	tolerated(0.43)	neutral(0.128)	superfamily_Ankyrin repeat
TRAF3IP1	26146	genome.wustl.edu	37	2	239237890	239237890	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015650.3	+1	validated	p.G274	0.002	95	0%	618	22%	4	25%	-	-	-	HMMPfam_MIP-T3
ANKMY1	51281	genome.wustl.edu	37	2	241465653	241465653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016552.2	-1	validated	p.A299V	0.006	45	0%	122	23.8%	1	100%	probably_damaging(0.995)	tolerated(0.3)	deleterious(0.486)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SETD5	55209	genome.wustl.edu	37	3	9486932	9486932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.D463G	0.569	109	0%	282	31.2%	2	100%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
SCN5A	6331	genome.wustl.edu	37	3	38601789	38601789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.N1365S	1.000	89	0%	343	66.2%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN10A	6336	genome.wustl.edu	37	3	38798615	38798615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.S329Y	0.017	137	0%	251	61.4%	0	-	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_Ion_trans,superfamily_SSF81324
XIRP1	165904	genome.wustl.edu	37	3	39227360	39227360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.R1193W	0.000	8	0.000	32	0.312	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PTH1R	5745	genome.wustl.edu	37	3	46940035	46940035	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000313063	+1	known	p.P372	0.000	7	0.000	19	0.632	0	-	-	-	-	HMMPfam_7tm_2
DNAH1	25981	genome.wustl.edu	37	3	52400524	52400524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.G1857D	1.000	12	0%	44	61.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
ARHGEF3	50650	genome.wustl.edu	37	3	56835811	56835811	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000465659	-1	known	p.L56*	1.000	15	0%	42	33.3%	0	-	benign(0.312)	tolerated(0.56)	neutral(0.104)	NULL
FAM55C	91775	genome.wustl.edu	37	3	101540726	101540726	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134456.1	+1	validated	p.L536	0.993	19	0%	109	18.3%	4	50%	-	-	-	NULL
CBLB	868	genome.wustl.edu	37	3	105400581	105400581	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170662.3	-1	validated	p.S761	1.000	194	0%	361	11.1%	5	40%	-	-	-	NULL
BBX	56987	genome.wustl.edu	37	3	107463526	107463526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142568.1	+1	validated	p.R240H	1.000	117	0%	346	39.3%	0	-	benign(0.237)	deleterious(0)	neutral(0.468)	HMMPfam_DUF2028
ARHGAP31	57514	genome.wustl.edu	37	3	119133188	119133188	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.P804	0.001	15	0%	81	37%	0	-	-	-	-	NULL
ILDR1	286676	genome.wustl.edu	37	3	121711998	121711998	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.S489W	1.000	39	0%	156	19.9%	4	25%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
SLC41A3	54946	genome.wustl.edu	37	3	125786790	125786790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008485.1	-1	validated	p.Q91H	0.999	4	0.000	42	0.286	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
H1FOO	132243	genome.wustl.edu	37	3	129268081	129268081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153833.1	+1	reviewed	p.D206N	0.000	10	0%	62	51.6%	0	-	benign(0.103)	tolerated(0.43)	neutral(0.021)	NULL
PIK3R4	30849	genome.wustl.edu	37	3	130463570	130463570	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014602.2	-1	validated	p.T165fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
PLSCR2	57047	genome.wustl.edu	37	3	146171805	146171805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020359.1	-1	provisional	p.A156E	0.000	414	0%	538	24.7%	0	-	benign(0.003)	tolerated(0.51)	neutral(0.009)	HMMPfam_Scramblase
ZIC4	84107	genome.wustl.edu	37	3	147108916	147108916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000383075	-1	known	p.R269Q	1.000	8	0.000	18	0.278	0	-	benign(0.356)	deleterious(0.04)	neutral(0.462)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RNF13	11342	genome.wustl.edu	37	3	149589884	149589884	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007282.4	+1	reviewed	p.N88	1.000	351	0%	417	32.6%	6	50%	-	-	-	HMMPfam_PA,superfamily_Transferrin receptor ectodomain apical domain
MED12L	116931	genome.wustl.edu	37	3	150908552	150908552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053002.4	+1	reviewed	p.L601P	1.000	108	0%	405	24.2%	0	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
GOLIM4	27333	genome.wustl.edu	37	3	167747023	167747023	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014498.3	-1	reviewed	p.G501*	0.997	108	0%	495	17.4%	19	5.2%	-	-	-	NULL
NAALADL2	254827	genome.wustl.edu	37	3	175293962	175293962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207015.2	+1	validated	p.I596T	0.974	103	0%	273	15%	4	50%	benign(0.002)	tolerated(0.43)	neutral(0.013)	superfamily_Zn-dependent exopeptidases
ZMAT3	64393	genome.wustl.edu	37	3	178785362	178785362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022470.3	-1	reviewed	p.D60V	1.000	78	0%	513	12.1%	0	-	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	NULL
DVL3	1857	genome.wustl.edu	37	3	183884752	183884752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.P396H	1.000	47	0%	315	45.7%	45	46.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
VPS8	23355	genome.wustl.edu	37	3	184637916	184637916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009921.2	+1	validated	p.T795N	1.000	136	0%	138	33.3%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TP63	8626	genome.wustl.edu	37	3	189611996	189611996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003722.4	+1	reviewed	p.D583V	1.000	36	0%	196	22.4%	2	0%	benign(0.323)	tolerated(0.25)	neutral(0.138)	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2
ZNF518B	85460	genome.wustl.edu	37	4	10447039	10447039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.L305P	0.000	189	0%	254	64.6%	1	100%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GRXCR1	389207	genome.wustl.edu	37	4	42965026	42965026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080476.1	+1	provisional	p.V168I	0.996	149	0%	307	61.6%	0	-	probably_damaging(0.995)	tolerated(0.19)	deleterious(0.507)	HMMPfam_Glutaredoxin,superfamily_Thiordxn-like_fd
LPHN3	23284	genome.wustl.edu	37	4	62863946	62863946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.I1052V	1.000	364	0%	400	31.2%	1	100%	benign(0.001)	tolerated(0.79)	neutral(0.001)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
WDFY3	23001	genome.wustl.edu	37	4	85742581	85742581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.A416V	1.000	123	0%	206	28.6%	0	-	possibly_damaging(0.936)	tolerated(0.19)	neutral(0.431)	superfamily_ARM repeat
H2AFZ	3015	genome.wustl.edu	37	4	100870076	100870076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002106.3	-1	reviewed	p.A73T	1.000	112	0%	166	28.3%	431	46.8%	possibly_damaging(0.521)	deleterious(0.04)	deleterious(0.524)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
ANK2	287	genome.wustl.edu	37	4	114260443	114260443	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514960	+1	known	p.*299R	1.000	131	0%	233	24.9%	0	-	-	-	-	NULL
C4orf33	132321	genome.wustl.edu	37	4	130030679	130030679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099783.1	+1	validated	p.G116C	1.000	120	0%	166	31.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLL1	7092	genome.wustl.edu	37	4	166924636	166924636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012464.3	+1	reviewed	p.L242F	1.000	145	0%	429	58.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
TERT	7015	genome.wustl.edu	37	5	1272327	1272327	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198253.2	-1	reviewed	p.P785	0.000	4	0.000	41	0.317	0	-	-	-	-	superfamily_DNA/RNA polymerases
SRD5A1	6715	genome.wustl.edu	37	5	6656219	6656219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513117	+1	known	p.D108N	0.984	304	0%	519	21.4%	4	50%	unknown(0)	-	-	NULL
ADCY2	108	genome.wustl.edu	37	5	7690916	7690916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020546.2	+1	reviewed	p.F278Y	1.000	48	0%	216	22.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_CYCc,superfamily_A/G_cyclase
CDH9	1007	genome.wustl.edu	37	5	26881509	26881509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.R702S	1.000	222	0%	427	45.4%	0	-	probably_damaging(0.962)	tolerated(0.11)	deleterious(0.677)	HMMPfam_Cadherin_C
CDH9	1007	genome.wustl.edu	37	5	26988271	26988271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.W57L	1.000	204	0%	351	23.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Cadherin
NIM1	167359	genome.wustl.edu	37	5	43277223	43277223	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153361.2	+1	provisional	p.S119	1.000	84	0%	326	21.5%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLK2	10769	genome.wustl.edu	37	5	57752346	57752346	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006622.2	-1	validated	p.Q409	1.000	239	0%	707	22.6%	2	0%	-	-	-	NULL
EDIL3	10085	genome.wustl.edu	37	5	83680184	83680184	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005711.3	-1	reviewed	p.R3	0.199	7	0.000	46	0.217	0	-	-	-	-	NULL
NR2F1	7025	genome.wustl.edu	37	5	92929324	92929324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005654.4	+1	provisional	p.C350G	1.000	17	0%	48	45.8%	26	84.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
MAN2A1	4124	genome.wustl.edu	37	5	109155529	109155529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002372.2	+1	reviewed	p.G757C	0.036	117	0%	168	19%	2	0%	possibly_damaging(0.482)	tolerated(0.13)	neutral(0.412)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
CHSY3	337876	genome.wustl.edu	37	5	129243924	129243926	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175856.4	+1	validated	p.E320in_frame_del	0.824:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TGFBI	7045	genome.wustl.edu	37	5	135382676	135382676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000358.2	+1	reviewed	p.N199S	0.246	19	0%	60	28.3%	15	0%	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
SLC35A4	113829	genome.wustl.edu	37	5	139947679	139947679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080670.2	+1	provisional	p.A309T	1.000	17	0%	17	35.3%	52	23%	benign(0.355)	tolerated(0.05)	neutral(0.458)	HMMPfam_Nuc_sug_transp
PCDHA9	9752	genome.wustl.edu	37	5	140230244	140230244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.R722W	1.000	21	0%	95	20%	1	0%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
PCDHA11	56138	genome.wustl.edu	37	5	140249893	140249893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.N402I	0.752	35	0%	196	29.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140255429	140255429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.K124N	0.002	81	0%	209	16.3%	0	-	possibly_damaging(0.626)	tolerated(0.43)	neutral(0.232)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256415	140256415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.P453H	1.000	23	0%	116	39.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB3	56132	genome.wustl.edu	37	5	140482414	140482414	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018937.2	+1	reviewed	p.V727	0.000	76	0%	132	14.4%	16	12.5%	-	-	-	NULL
PCDHB16	57717	genome.wustl.edu	37	5	140563584	140563584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.A484T	1.000	17	0%	52	36.5%	3	33.3%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB11	56125	genome.wustl.edu	37	5	140580213	140580213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018931.2	+1	reviewed	p.R289H	0.000	164	0%	270	44.8%	1	100%	benign(0.002)	tolerated(0.32)	neutral(0.024)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA11	56105	genome.wustl.edu	37	5	140802742	140802742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.H650D	1.000	15	0%	33	42.4%	1	0%	possibly_damaging(0.815)	deleterious(0.03)	deleterious(0.672)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
JAKMIP2	9832	genome.wustl.edu	37	5	146997571	146997571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014790.3	-1	provisional	p.A750V	1.000	185	0%	724	25.8%	1	0%	possibly_damaging(0.767)	tolerated(0.14)	deleterious(0.534)	NULL
SH3TC2	79628	genome.wustl.edu	37	5	148384442	148384442	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024577.3	-1	reviewed	p.Y1233*	1.000	13	0%	79	17.7%	0	-	-	-	-	NULL
SLC36A1	206358	genome.wustl.edu	37	5	150859004	150859004	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078483.2	+1	reviewed	p.E371	0.000	59	0%	517	24.4%	1	100%	-	-	-	HMMPfam_Aa_trans
ATP10B	23120	genome.wustl.edu	37	5	160042867	160042867	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.L877	1.000	41	0%	137	51.8%	0	-	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
GABRB2	2561	genome.wustl.edu	37	5	160753381	160753381	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.L395	0.993	213	0%	342	19.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
FAM153A	285596	genome.wustl.edu	37	5	175536156	175536156	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393522	+1	known	p.I327S	0.004	224	0%	943	22%	0	-	-	-	-	NULL
GMDS	2762	genome.wustl.edu	37	6	1726689	1726689	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001500.2	-1	validated	p.H316	1.000	148	0%	354	26.3%	114	43.8%	-	-	-	superfamily_NAD(P)-bd
HIST1H2AC	8334	genome.wustl.edu	37	6	26124837	26124837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003512.3	+1	reviewed	p.K126R	1.000	40	0%	129	31%	20	45%	benign(0.125)	deleterious(0)	neutral(0.455)	superfamily_Histone-fold
TAF8	129685	genome.wustl.edu	37	6	42025135	42025135	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138572.2	+1	reviewed	p.T125S	1.000	25	0%	219	15.5%	31	12.9%	benign(0.116)	tolerated(0.52)	neutral(0.018)	NULL
LRRC73	221424	genome.wustl.edu	37	6	43475384	43475384	+	Splice_Site	SNP	T	T	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000468319	-1	known	NULL	0.771	32	0%	370	13%	4	50%	-	-	-	-
TCTE1	202500	genome.wustl.edu	37	6	44254263	44254263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182539.3	-1	validated	p.P95R	1.000	33	0%	245	13.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MUT	4594	genome.wustl.edu	37	6	49425672	49425672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000255.3	-1	reviewed	p.V162A	1.000	107	0%	91	25.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
BAG2	9532	genome.wustl.edu	37	6	57048630	57048630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004282.3	+1	reviewed	p.T93I	1.000	95	0%	219	19.6%	20	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KHDRBS2	202559	genome.wustl.edu	37	6	62887168	62887168	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152688.2	-1	validated	p.K47N	1.000	545	0%	573	16.2%	0	-	benign(0.389)	tolerated(0.49)	neutral(0.135)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129722454	129722454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.R1844H	0.967	89	0%	196	75%	0	-	benign(0.001)	tolerated(0.09)	neutral(0.296)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I,superfamily_SSF56399
GRM1	2911	genome.wustl.edu	37	6	146351219	146351219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.S189N	1.000	18	0%	63	41.3%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,superfamily_SSF53822
SYNE1	23345	genome.wustl.edu	37	6	152652436	152652436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.V4462M	0.960	66	0%	210	35.2%	0	-	possibly_damaging(0.785)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150
TAGAP	117289	genome.wustl.edu	37	6	159457890	159457890	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054114.3	-1	reviewed	p.E389Q	0.000	25	0%	78	38.5%	0	-	probably_damaging(0.996)	tolerated(0.44)	deleterious(0.474)	NULL
MAS1	4142	genome.wustl.edu	37	6	160328352	160328352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002377.2	+1	reviewed	p.L122P	1.000	58	0%	197	69%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
LPA	4018	genome.wustl.edu	37	6	161087331	161087331	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005577.2	-1	reviewed	e0+2	0.091	64	0%	100	61%	0	-	-	-	-	-
PLG	5340	genome.wustl.edu	37	6	161137733	161137733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000301.3	+1	reviewed	p.R242Q	0.036	53	0%	85	36.5%	0	-	probably_damaging(0.957)	tolerated(0.31)	neutral(0.428)	HMMPfam_Kringle,HMMSmart_KR,superfamily_Kringle-like,PatternScan_KRINGLE_1
PDE10A	10846	genome.wustl.edu	37	6	165829770	165829770	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130690.1	-1	validated	e12-1	1.000	164	0%	295	36.3%	0	-	-	-	-	-
TCTE3	6991	genome.wustl.edu	37	6	170144251	170144251	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174910.1	-1	provisional	p.K80N	0.001	170	0%	180	28.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PDGFA	5154	genome.wustl.edu	37	7	550552	550552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002607.5	-1	reviewed	p.N116S	1.000	4	0.000	45	0.178	52	30.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
GPER	2852	genome.wustl.edu	37	7	1131743	1131743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039966.1	+1	reviewed	p.A127T	0.810	20	0%	111	28.8%	5	60%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TNRC18	84629	genome.wustl.edu	37	7	5402334	5402334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.R1448W	0.997	21	0%	106	41.5%	14	21.4%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
RNF216	54476	genome.wustl.edu	37	7	5662580	5662580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207111.2	-1	reviewed	p.R895W	0.927	14	0%	166	17.5%	33	21.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC100131257	100131257	genome.wustl.edu	37	7	7118633	7118633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716696.1	-1	model	p.F191L	0.432	89	0%	105	41%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC340268	340268	genome.wustl.edu	37	7	9766853	9766853	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041608.1	+1	model	NULL	1.000	38	0%	118	23.7%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21940667	21940667	+	Missense_Mutation	SNP	G	G	A	rs138945257	by1000genomes	TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.R4456H	0.939	23	0%	120	15.8%	52	23%	benign(0.094)	tolerated(0.15)	neutral(0.248)	HMMPfam_Dynein_heavy
CCDC126	90693	genome.wustl.edu	37	7	23651033	23651033	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138771.3	+1	validated	p.T33	0.994	231	0%	475	37.9%	5	40%	-	-	-	NULL
MRPL32	64983	genome.wustl.edu	37	7	42974677	42974677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031903.2	+1	reviewed	p.R85H	1.000	100	0%	324	15.7%	69	18.8%	benign(0.019)	deleterious(0)	neutral(0.446)	NULL
NACAD	23148	genome.wustl.edu	37	7	45120588	45120588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258775	-1	known	p.A1480T	1.000	30	0%	176	40.3%	1	0%	possibly_damaging(0.93)	deleterious(0)	deleterious(0.821)	NULL
LANCL2	55915	genome.wustl.edu	37	7	55467755	55467755	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018697.3	+1	validated	p.T212	0.716	97	0%	554	17%	14	35.7%	-	-	-	HMMPfam_LANC_like
CHCHD2	51142	genome.wustl.edu	37	7	56172167	56172167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016139.2	-1	validated	p.R18W	1.000	14	0%	52	21.2%	362	23.4%	unknown(0)	deleterious(0)	-	NULL
HGF	3082	genome.wustl.edu	37	7	81350162	81350162	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.D390E	0.954	176	0%	388	34.8%	2	50%	benign(0.119)	tolerated(0.27)	neutral(0.043)	HMMSmart_SM00130
DBF4	10926	genome.wustl.edu	37	7	87516167	87516167	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.L136	0.998	594	0%	561	16.2%	4	0%	-	-	-	NULL
ZAN	7455	genome.wustl.edu	37	7	100364822	100364822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003386.1	+1	reviewed	p.A1601V	0.002	17	0%	100	18%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_VWD,HMMSmart_SM00216
LAMB1	3912	genome.wustl.edu	37	7	107580713	107580713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.R1161H	1.000	18	0%	188	18.6%	58	24.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
C7orf58	79974	genome.wustl.edu	37	7	120765888	120765888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024913.4	+1	validated	p.F359S	1.000	387	0%	1023	17.3%	0	-	possibly_damaging(0.446)	deleterious(0.01)	deleterious(0.551)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121612689	121612689	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002851.2	+1	reviewed	p.C133	1.000	167	0%	384	17.7%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ENSG00000232856	0	genome.wustl.edu	37	7	132719839	132719839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448615	-1	known	p.A50D	1.000	57	0%	200	10%	433	0%	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_EF1G,superfamily_eEF1-gamma domain
XKR5	389610	genome.wustl.edu	37	8	6679394	6679394	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207411.4	-1	validated	p.Y268	0.059	16	0%	147	19%	0	-	-	-	-	HMMPfam_XK-related
NEFL	4747	genome.wustl.edu	37	8	24811706	24811706	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000221169	-1	known	p.I386	1.000	350	0%	632	37.8%	7	28.5%	-	-	-	HMMPfam_Filament,PatternScan_IF
PPP2R2A	5520	genome.wustl.edu	37	8	26223851	26223851	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002717.3	+1	reviewed	p.S331	1.000	287	0%	607	19.8%	20	30%	-	-	-	superfamily_WD40 repeat-like
MBOAT4	619373	genome.wustl.edu	37	8	29990377	29990377	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100916.1	-1	validated	p.V130	1.000	20	0%	97	44.3%	0	-	-	-	-	HMMPfam_MBOAT
RAB11FIP1	80223	genome.wustl.edu	37	8	37734871	37734871	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002814.2	-1	validated	p.S190	0.002	233	0%	844	38.6%	3	33.3%	-	-	-	NULL
TACC1	6867	genome.wustl.edu	37	8	38677969	38677969	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006283.2	+1	reviewed	p.L403	0.052	72	0%	301	20.3%	2	0%	-	-	-	NULL
STMN2	11075	genome.wustl.edu	37	8	80553702	80553702	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007029.2	+1	provisional	p.R69*	0.969	75	0%	254	21.3%	0	-	-	-	-	HMMPfam_Stathmin,superfamily_Stathmin
LRP12	29967	genome.wustl.edu	37	8	105509325	105509325	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013437.4	-1	reviewed	p.C485	1.000	118	0%	480	14.8%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
ZFPM2	23414	genome.wustl.edu	37	8	106815021	106815021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012082.3	+1	reviewed	p.S904N	1.000	74	0%	186	16.7%	0	-	benign(0.097)	tolerated(0.32)	neutral(0.032)	NULL
ANGPT1	284	genome.wustl.edu	37	8	108359281	108359281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001146.3	-1	reviewed	p.Q114H	1.000	85	0%	530	36.6%	0	-	benign(0.088)	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113529341	113529341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.L1560F	0.999	149	0%	409	18.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
EXT1	2131	genome.wustl.edu	37	8	118817098	118817098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000127.2	-1	reviewed	p.A640T	1.000	159	0%	684	36.7%	42	50%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
MYC	4609	genome.wustl.edu	37	8	128750735	128750735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002467.4	+1	reviewed	p.A91V	0.834	10	0%	54	20.4%	19	15.7%	possibly_damaging(0.822)	tolerated(0.08)	deleterious(0.611)	HMMPfam_Myc_N
TSNARE1	203062	genome.wustl.edu	37	8	143425652	143425652	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145003.3	-1	validated	p.V140	1.000	7	0.000	42	0.310	1	0%	-	-	-	NULL
LYNX1	66004	genome.wustl.edu	37	8	143857093	143857093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023946.2	-1	reviewed	p.H24	0.942	18	0%	177	26%	1	0%	-	-	-	HMMPfam_UPAR_LY6,superfamily_Snake toxin-like
ZFP41	286128	genome.wustl.edu	37	8	144332293	144332293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173832.3	+1	provisional	p.R94W	0.000	40	0%	180	17.2%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZC3H3	23144	genome.wustl.edu	37	8	144550552	144550552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015117.2	-1	validated	p.R702K	1.000	5	0.000	68	0.485	10	10%	possibly_damaging(0.533)	deleterious(0.05)	deleterious(0.525)	HMMPfam_zf-CCCH,HMMSmart_SM00356
EPPK1	83481	genome.wustl.edu	37	8	144941902	144941902	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.T1840	0.000	177	0%	1069	39.2%	1	100%	-	-	-	NULL
CYHR1	50626	genome.wustl.edu	37	8	145678820	145678820	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138496.1	-1	validated	p.C90	1.000	23	0%	189	34.9%	15	26.6%	-	-	-	superfamily_RING/U-box
PSIP1	11168	genome.wustl.edu	37	9	15472646	15472646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128217.1	-1	validated	p.Q321K	1.000	418	0%	1047	38.3%	22	0%	benign(0.008)	tolerated(0.18)	neutral(0.056)	NULL
RPS6	6194	genome.wustl.edu	37	9	19378870	19378870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010.2	-1	reviewed	p.P62H	1.000	29	0%	67	62.7%	2636	90.8%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_Ribosomal_S6e,PatternScan_RIBOSOMAL_S6E
FAM75C1	441452	genome.wustl.edu	37	9	90536784	90536784	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.A654	0.001	57	0%	180	30%	0	-	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100075614	100075614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.A332V	0.000	23	0%	152	32.2%	0	-	probably_damaging(0.965)	tolerated(0.19)	neutral(0.456)	NULL
ASTN2	23245	genome.wustl.edu	37	9	119495724	119495724	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198187.3	-1	reviewed	p.C825	1.000	22	0%	90	34.4%	0	-	-	-	-	NULL
LOC389787	389787	genome.wustl.edu	37	9	120845431	120845431	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725747.2	-1	model	p.H43L	1.000	202	0%	316	62.3%	0	-	-	-	-	HMMPfam_TCTP,superfamily_Mss4-like
ZBTB34	403341	genome.wustl.edu	37	9	129642242	129642242	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099270.1	+1	validated	p.T184	0.001	26	0%	59	23.7%	0	-	-	-	-	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139283016	139283016	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003086.2	-1	validated	p.Q335*	1.000	25	0%	176	33%	1	0%	-	-	-	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
ARHGAP21	57584	genome.wustl.edu	37	10	24873527	24873527	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.G1897	0.001	109	0%	479	64.9%	24	100%	-	-	-	NULL
PTCHD3	374308	genome.wustl.edu	37	10	27702985	27702985	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.D65	0.000	3	0.000	17	0.824	0	-	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73464700	73464700	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.N922	0.032	4	0.000	13	0.769	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73464825	73464825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.R964Q	1.000	2	0.000	6	1.000	0	-	probably_damaging(0.999)	tolerated(0.63)	deleterious(0.494)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CTBP2	1488	genome.wustl.edu	37	10	126683110	126683110	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022802.2	-1	reviewed	p.S776	1.000	106	0%	264	25.4%	25	36%	-	-	-	HMMPfam_2-Hacid_dh,HMMPfam_2-Hacid_dh_C,superfamily_NAD(P)-bd
OR51B4	79339	genome.wustl.edu	37	11	5322931	5322931	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033179.2	-1	validated	p.V82	0.000	37	0%	190	12.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NAV2	89797	genome.wustl.edu	37	11	19955177	19955177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.L463F	1.000	64	0%	136	22.8%	0	-	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
LRRC4C	57689	genome.wustl.edu	37	11	40136527	40136527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020929.1	-1	validated	p.A439V	1.000	106	0%	192	67.2%	1	0%	benign(0.097)	tolerated(0.16)	neutral(0.067)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CHST1	8534	genome.wustl.edu	37	11	45671651	45671651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003654.4	-1	validated	p.V275M	0.913	7	0.000	21	0.714	1	0%	possibly_damaging(0.909)	tolerated(0.07)	deleterious(0.681)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
ENSG00000205035	0	genome.wustl.edu	37	11	49597858	49597858	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357667	+1	known	p.Q20*	1.000	57	0%	200	25%	0	-	-	-	-	NULL
OR5AS1	219447	genome.wustl.edu	37	11	55798011	55798011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001921.1	+1	provisional	p.M39I	0.010	176	0%	131	30.5%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_SSF81321
ENSG00000196779	0	genome.wustl.edu	37	11	57876778	57876778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357944	-1	known	p.A119V	1.000	23	0%	18	22.2%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
AHNAK	79026	genome.wustl.edu	37	11	62289509	62289509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.P4127L	0.936	154	0%	229	30.6%	2	0%	probably_damaging(0.96)	tolerated(0.14)	deleterious(0.653)	NULL
SF1	7536	genome.wustl.edu	37	11	64535057	64535057	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413725	-1	known	p.W11*	1.000	9	0.000	83	0.639	49	87.7%	unknown(0)	deleterious(0.01)	-	NULL
PCNXL3	399909	genome.wustl.edu	37	11	65387853	65387853	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032223.2	+1	validated	p.Y684	0.995	13	0%	74	37.8%	2	0%	-	-	-	NULL
LRP5	4041	genome.wustl.edu	37	11	68192574	68192574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002335.2	+1	reviewed	p.L1081M	1.000	19	0%	41	73.2%	20	100%	benign(0.001)	tolerated(0.74)	neutral(0.002)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
MRGPRF	116535	genome.wustl.edu	37	11	68773002	68773002	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098515.1	-1	validated	p.W259*	1.000	9	0.000	46	0.696	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
INPPL1	3636	genome.wustl.edu	37	11	71944186	71944186	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.W673*	1.000	27	0%	111	65.8%	3	33.3%	-	-	-	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
FAT3	120114	genome.wustl.edu	37	11	92257932	92257932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.N1142S	1.000	35	0%	118	55.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
TECTA	7007	genome.wustl.edu	37	11	121028594	121028594	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.R1450	1.000	11	0%	28	35.7%	0	-	-	-	-	HMMSmart_SM00215
LEPREL2	10536	genome.wustl.edu	37	12	6938023	6938024	+	Frame_Shift_Ins	INS	-	-	G	rs112583020	byCluster;by1000genomes	TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290510	+1	known	p.R141fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C1RL	51279	genome.wustl.edu	37	12	7249140	7249140	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016546.2	-1	validated	p.G437	0.001	25	0%	162	28.4%	6	16.6%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_SER
GSG1	83445	genome.wustl.edu	37	12	13238101	13238101	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080555.1	-1	validated	p.E275*	1.000	43	0%	108	20.4%	0	-	-	-	-	NULL
SLC38A2	54407	genome.wustl.edu	37	12	46757562	46757562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018976.4	-1	validated	p.A334V	1.000	260	0%	396	21.2%	9	0%	benign(0.001)	tolerated(0.47)	neutral(0.011)	HMMPfam_Aa_trans
ADCY6	112	genome.wustl.edu	37	12	49168472	49168472	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015270.3	-1	reviewed	e12+2	0.961	32	0%	215	25.6%	0	-	-	-	-	-
NCKAP5L	57701	genome.wustl.edu	37	12	50195699	50195699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037806.3	-1	validated	p.R95W	1.000	34	0%	359	21.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRT7	3855	genome.wustl.edu	37	12	52635264	52635265	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005556.3	+1	reviewed	p.E235fs	0.001:1.000	-	-	-	-	-	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KRT85	3891	genome.wustl.edu	37	12	52756743	52756743	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002283.3	-1	reviewed	p.T324	0.803	49	0%	332	22%	0	-	-	-	-	HMMPfam_Filament
KRT6C	286887	genome.wustl.edu	37	12	52867365	52867365	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173086.4	-1	reviewed	p.G53*	0.649	51	0%	159	13.2%	0	-	-	-	-	NULL
MARS	4141	genome.wustl.edu	37	12	57884413	57884413	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004990.2	+1	reviewed	p.P252	0.097	61	0%	259	40.5%	21	61.9%	-	-	-	NULL
PTPRB	5787	genome.wustl.edu	37	12	70954558	70954558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.L1442P	0.896	119	0%	277	24.2%	2	50%	possibly_damaging(0.609)	tolerated(0.38)	neutral(0.228)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GLIPR1L1	256710	genome.wustl.edu	37	12	75737520	75737520	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152779.2	+1	provisional	p.Q74	0.001	148	0%	265	29.1%	0	-	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
C12orf50	160419	genome.wustl.edu	37	12	88376937	88376937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	p.W388R	1.000	350	0%	254	20.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
POC1B	282809	genome.wustl.edu	37	12	89890993	89890993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172240.1	-1	provisional	p.A76V	1.000	46	0%	227	22.9%	6	16.6%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
NUDT4	11163	genome.wustl.edu	37	12	93788488	93788488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199040.2	+1	reviewed	p.Y68C	1.000	66	0%	301	49.2%	12	75%	probably_damaging(0.988)	tolerated(0.27)	deleterious(0.471)	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX
NEDD1	121441	genome.wustl.edu	37	12	97328801	97328801	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135175.1	+1	validated	p.G186	1.000	122	0%	297	22.9%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1
GAS2L3	283431	genome.wustl.edu	37	12	100994274	100994274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174942.1	+1	provisional	p.A45P	1.000	83	0%	341	20.5%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Calponin-homology domain CH-domain
CHST11	50515	genome.wustl.edu	37	12	105150997	105150997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018413.5	+1	validated	p.A159T	0.968	16	0%	86	27.9%	13	7.6%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Sulfotransfer_2
LOC341378	341378	genome.wustl.edu	37	12	106565450	106565450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715424.1	+1	model	p.E98D	1.000	270	0%	343	28.6%	0	-	-	-	-	NULL
ACACB	32	genome.wustl.edu	37	12	109696872	109696872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.M2152T	0.998	35	0%	169	25.4%	4	0%	possibly_damaging(0.671)	deleterious(0)	deleterious(0.682)	HMMPfam_Carboxyl_trans,superfamily_ClpP/crotonase
C12orf51	283450	genome.wustl.edu	37	12	112622300	112622300	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.S3068	0.981	20	0%	84	33.3%	3	66.6%	-	-	-	NULL
PTPN11	5781	genome.wustl.edu	37	12	112940031	112940031	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002834.3	+1	reviewed	p.P561	0.171	44	0%	149	24.8%	8	25%	-	-	-	NULL
MSI1	4440	genome.wustl.edu	37	12	120805881	120805881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002442.2	-1	reviewed	p.V66A	1.000	6	0.000	89	0.258	8	25%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF10	7556	genome.wustl.edu	37	12	133732893	133732893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015394.4	+1	reviewed	p.C354Y	1.000	206	0%	341	12.3%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MTUS2	23281	genome.wustl.edu	37	13	29674997	29674997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.P855R	0.997	15	0%	28	67.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FBXL3	26224	genome.wustl.edu	37	13	77581918	77581918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012158.2	-1	reviewed	p.L217I	1.000	52	0%	82	28%	5	20%	possibly_damaging(0.783)	deleterious(0.03)	deleterious(0.657)	superfamily_SSF52047
MYCBP2	23077	genome.wustl.edu	37	13	77651301	77651301	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.F3864L	1.000	212	0%	224	28.1%	1	100%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	NULL
SLAIN1	122060	genome.wustl.edu	37	13	78335193	78335193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040153.2	+1	validated	p.A308T	1.000	28	0%	97	30.9%	0	-	benign(0.3)	tolerated(0.1)	neutral(0.379)	NULL
OR4N2	390429	genome.wustl.edu	37	14	20295658	20295658	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004723.1	+1	provisional	p.L17	0.002	246	0%	253	61.7%	0	-	-	-	-	superfamily_SSF81321
CEBPE	1053	genome.wustl.edu	37	14	23586714	23586714	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001805.2	-1	reviewed	p.G276	0.996	12	0%	63	34.9%	0	-	-	-	-	NULL
TRIM9	114088	genome.wustl.edu	37	14	51467494	51467494	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015163.5	-1	reviewed	p.S457	0.996	53	0%	233	29.6%	3	33.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BMP4	652	genome.wustl.edu	37	14	54418720	54418720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001202.3	-1	reviewed	p.S74N	1.000	10	0%	29	24.1%	1	0%	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	HMMPfam_TGFb_propeptide
PSMA3	5684	genome.wustl.edu	37	14	58724681	58724681	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002788.2	+1	reviewed	p.Y123	1.000	163	0%	310	28.7%	226	45.1%	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
VRTN	55237	genome.wustl.edu	37	14	74823606	74823606	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018228.2	+1	validated	p.S40	0.998	15	0%	83	31.3%	0	-	-	-	-	NULL
BATF	10538	genome.wustl.edu	37	14	76012937	76012937	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006399.3	+1	reviewed	p.S102fs	0.829	-	-	-	-	-	-	-	-	-	NULL
TTC7B	145567	genome.wustl.edu	37	14	91059956	91059956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010854.1	-1	provisional	p.T661A	1.000	15	0%	65	58.5%	1	0%	benign(0.206)	tolerated(0.29)	neutral(0.049)	superfamily_TPR-like
IGHV4-61	28391	genome.wustl.edu	37	14	107095423	107095423	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390630	-1	known	p.S19	0.987	106	0%	66	10.6%	2	0%	-	-	-	NULL
OR4N4	283694	genome.wustl.edu	37	15	22382600	22382600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005241.1	+1	provisional	p.F43S	0.895	652	0%	1154	11.6%	0	-	benign(0.045)	tolerated(0.17)	neutral(0.061)	HMMPfam_7tm_1,superfamily_SSF81321
MGA	23269	genome.wustl.edu	37	15	41962146	41962146	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.I352F	0.969	74	0%	91	45.1%	0	-	benign(0.054)	deleterious(0)	neutral(0.448)	NULL
PLA2G4E	123745	genome.wustl.edu	37	15	42285138	42285138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080490.1	-1	provisional	p.R394C	0.997	26	0%	110	21.8%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
PLA2G4D	283748	genome.wustl.edu	37	15	42375408	42375408	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178034.3	-1	validated	p.S220	0.006	14	0%	97	27.8%	0	-	-	-	-	NULL
FBN1	2200	genome.wustl.edu	37	15	48764827	48764827	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.Q1419	1.000	23	0%	153	20.3%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
LEO1	123169	genome.wustl.edu	37	15	52258622	52258622	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138792.2	-1	provisional	p.D46	0.007	155	0%	478	23%	9	11.1%	-	-	-	NULL
CLPX	10845	genome.wustl.edu	37	15	65448152	65448152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006660.3	-1	provisional	p.E397K	1.000	269	0%	582	23%	8	75%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMSmart_SM00382,HMMPfam_AAA_2,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPL4	6124	genome.wustl.edu	37	15	66792697	66792697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000968.2	-1	reviewed	p.M284T	1.000	161	0%	338	24.6%	1433	32.4%	possibly_damaging(0.694)	deleterious(0)	deleterious(0.694)	NULL
CD276	80381	genome.wustl.edu	37	15	74000686	74000686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024736.1	+1	validated	p.P459H	0.994	66	0%	405	24.4%	19	15.7%	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
PTPN9	5780	genome.wustl.edu	37	15	75782565	75782565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002833.2	-1	reviewed	p.R349Q	0.518	132	0%	492	25.4%	6	0%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ADAMTS7	11173	genome.wustl.edu	37	15	79083544	79083544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014272.3	-1	reviewed	p.P281T	1.000	16	0%	98	28.6%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ADAMTSL3	57188	genome.wustl.edu	37	15	84694125	84694125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.D1531E	0.107	87	0%	338	46.2%	0	-	benign(0.002)	tolerated(1)	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
C15orf42	90381	genome.wustl.edu	37	15	90119236	90119236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.A140V	0.052	6	0.000	14	0.357	0	-	benign(0.42)	tolerated(0.16)	neutral(0.196)	NULL
NPRL3	8131	genome.wustl.edu	37	16	136809	136809	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077350.1	-1	validated	p.R535H	0.340	15	0%	65	70.8%	20	95%	-	-	-	HMMPfam_UPF0171
LOC342346	342346	genome.wustl.edu	37	16	4626297	4626297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145011.1	+1	predicted	p.A606T	0.017	12	0%	36	69.4%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
GRIN2A	2903	genome.wustl.edu	37	16	9862843	9862843	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000833.3	-1	reviewed	p.V820	0.987	19	0%	73	39.7%	0	-	-	-	-	HMMPfam_Lig_chan
ERCC4	2072	genome.wustl.edu	37	16	14041843	14041843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005236.2	+1	reviewed	p.R797I	0.041	142	0%	265	35.5%	0	-	possibly_damaging(0.687)	deleterious(0)	deleterious(0.690)	superfamily_Restrict_endonuc_II-like_core
NOMO1	23420	genome.wustl.edu	37	16	14989879	14989879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456867	+1	known	p.R1239W	0.000	252	0%	468	17.1%	34	17.6%	unknown(0)	deleterious(0)	-	NULL
MVP	9961	genome.wustl.edu	37	16	29841979	29841979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005115.3	+1	reviewed	p.R37W	1.000	25	0%	154	30.5%	50	36%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Vault
ZNF688	146542	genome.wustl.edu	37	16	30581565	30581565	+	Missense_Mutation	SNP	G	G	A	rs188824106	by1000genomes	TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145271.3	-1	validated	p.P168L	0.001	8	0.000	43	0.558	5	60%	possibly_damaging(0.777)	tolerated(0.37)	neutral(0.309)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31092802	31092802	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014699.3	+1	validated	p.L1719	0.863	34	0%	106	79.2%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000214627	0	genome.wustl.edu	37	16	32005809	32005809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398685	+1	known	p.R390W	0.813	23	0%	65	58.5%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
ABCC11	85320	genome.wustl.edu	37	16	48221195	48221195	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.A950	0.000	37	0%	161	62.7%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
EDC4	23644	genome.wustl.edu	37	16	67915236	67915236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.P902L	0.998	15	0%	62	51.6%	14	100%	possibly_damaging(0.521)	tolerated(0.22)	neutral(0.217)	NULL
WDR59	79726	genome.wustl.edu	37	16	74943405	74943405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030581.3	-1	validated	p.G546R	1.000	32	0%	99	64.6%	2	100%	possibly_damaging(0.663)	tolerated(0.08)	deleterious(0.534)	NULL
FAM57A	79850	genome.wustl.edu	37	17	641253	641253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024792.1	+1	provisional	p.A125V	0.000	35	0%	178	32%	19	52.6%	benign(0.001)	tolerated(1)	-	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
WRAP53	55135	genome.wustl.edu	37	17	7592200	7592200	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018081.2	+1	validated	p.P78	0.000	78	0%	108	58.3%	4	100%	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26961002	26961002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	p.R1058Q	1.000	13	0%	48	60.4%	6	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Fmp27_GFWDK
FKBP10	60681	genome.wustl.edu	37	17	39978633	39978633	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455106	+1	known	p.T378M	0.997	17	0%	93	26.9%	188	40.9%	-	-	-	HMMSmart_SM00054
KAT2A	2648	genome.wustl.edu	37	17	40269588	40269588	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021078.2	-1	validated	p.A485	0.989	3	0.000	10	0.800	27	100%	-	-	-	NULL
INTS2	57508	genome.wustl.edu	37	17	59944942	59944942	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020748.2	-1	validated	p.I1197	1.000	158	0%	169	28.4%	0	-	-	-	-	NULL
SDK2	54549	genome.wustl.edu	37	17	71434110	71434110	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416616	-1	known	p.S208C	0.316	18	0%	30	53.3%	1	100%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
TCEB3C	162699	genome.wustl.edu	37	18	44555147	44555147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145653.3	-1	reviewed	p.E356A	0.000	70	0%	620	16.5%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	HMMPfam_Elongin_A
HMHA1	23526	genome.wustl.edu	37	19	1085857	1085858	+	In_Frame_Ins	INS	-	-	GGACGA	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012292.2	+1	validated	p.1092in_frame_insED	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SH3GL1	6455	genome.wustl.edu	37	19	4362702	4362702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003025.2	-1	provisional	p.E254K	1.000	13	0%	62	21%	41	51.2%	benign(0.111)	tolerated(0.08)	neutral(0.308)	NULL
PTPRS	5802	genome.wustl.edu	37	19	5215577	5215577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.A1376T	0.854	24	0%	90	62.2%	5	40%	benign(0)	tolerated(0.91)	-	superfamily_(Phosphotyrosine protein) phosphatases II
MUC16	94025	genome.wustl.edu	37	19	9065283	9065283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E7388G	0.000	127	0%	240	32.5%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9074416	9074416	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.Q4344*	0.000	108	0%	355	74.9%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9088485	9088485	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.V1110	0.000	100	0%	242	28.9%	0	-	-	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204070	9204070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004456.1	+1	provisional	p.S50R	0.702	76	0%	275	67.6%	0	-	possibly_damaging(0.81)	tolerated(0.5)	neutral(0.315)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KEAP1	9817	genome.wustl.edu	37	19	10600021	10600022	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012289.3	-1	reviewed	p.I518fs	0.555:0.047	-	-	-	-	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ZNF100	163227	genome.wustl.edu	37	19	21909506	21909506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173531.3	-1	validated	p.W536C	1.000	164	0%	181	29.3%	2	0%	possibly_damaging(0.796)	deleterious(0.04)	deleterious(0.648)	superfamily_C2H2 and C2HC zinc fingers
CEBPG	1054	genome.wustl.edu	37	19	33870580	33870580	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001806.2	+1	reviewed	p.G145	0.027	70	0%	182	29.7%	44	43.1%	-	-	-	NULL
ZNF607	84775	genome.wustl.edu	37	19	38189192	38189192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032689.4	-1	validated	p.D614N	1.000	124	0%	145	26.2%	0	-	possibly_damaging(0.624)	deleterious(0)	deleterious(0.662)	superfamily_C2H2 and C2HC zinc fingers
SIPA1L3	23094	genome.wustl.edu	37	19	38621400	38621400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.G1044D	1.000	14	0%	47	27.7%	8	75%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
GSK3A	2931	genome.wustl.edu	37	19	42738559	42738559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019884.2	-1	validated	p.Y284H	1.000	50	0%	162	30.2%	33	51.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PSG8	440533	genome.wustl.edu	37	19	43268333	43268333	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182707.2	-1	validated	p.V55	0.005	394	0%	804	33.7%	0	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
PSG11	5680	genome.wustl.edu	37	19	43528919	43528919	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002785.2	-1	validated	p.G118	0.015	334	0%	723	26%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
QPCTL	54814	genome.wustl.edu	37	19	46196122	46196122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017659.3	+1	validated	p.G54D	0.471	6	0.000	16	0.688	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
PNMAL2	57469	genome.wustl.edu	37	19	46998049	46998049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020709.1	-1	validated	p.A225V	0.001	36	0%	72	36.1%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
NR1H2	7376	genome.wustl.edu	37	19	50881931	50881931	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007121.4	+1	validated	p.Q209K	0.903	17	0%	68	26.5%	24	45.8%	benign(0.139)	tolerated(0.62)	neutral(0.016)	superfamily_Nuclear receptor ligand-binding domain
SIGLEC7	27036	genome.wustl.edu	37	19	51647666	51647666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014385.2	+1	validated	p.L146S	0.080	47	0%	188	67%	0	-	probably_damaging(0.984)	tolerated(0.08)	deleterious(0.730)	HMMPfam_V-set,superfamily_Immunoglobulin
ZNF808	388558	genome.wustl.edu	37	19	53057924	53057924	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039886.3	+1	validated	p.H585	0.289	188	0%	94	19.1%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
AURKC	6795	genome.wustl.edu	37	19	57746705	57746705	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015878.1	+1	reviewed	p.L284	0.952	91	0%	184	63.6%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF460	10794	genome.wustl.edu	37	19	57802659	57802659	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006635.3	+1	validated	p.K250	1.000	74	0%	94	28.7%	3	0%	-	-	-	superfamily_SSF57667
ZNF587	84914	genome.wustl.edu	37	19	58353441	58353441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343662.1	+1	model	p.M411L	0.000	187	0%	173	24.9%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TRIM28	10155	genome.wustl.edu	37	19	59058829	59058829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005762.2	+1	reviewed	p.D225N	1.000	35	0%	86	31.4%	61	39.3%	possibly_damaging(0.473)	deleterious(0.03)	deleterious(0.520)	HMMPfam_zf-B_box,HMMSmart_SM00336
CPXM1	56265	genome.wustl.edu	37	20	2776718	2776718	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019609.4	-1	reviewed	p.L444	0.995	32	0%	298	18.1%	12	0%	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
NAA20	51126	genome.wustl.edu	37	20	20007511	20007511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016100.3	+1	validated	p.R85C	0.999	119	0%	695	40.3%	210	38.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM83C	128876	genome.wustl.edu	37	20	33875395	33875395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178468.4	-1	validated	p.R396H	0.040	36	0%	394	16.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC100288393	100288393	genome.wustl.edu	37	20	50769936	50769936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343724.1	+1	model	p.A130T	1.000	24	0%	109	28.4%	4	50%	-	-	-	NULL
CSTF1	1477	genome.wustl.edu	37	20	54978735	54978735	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033521.1	+1	reviewed	p.S416	0.997	19	0%	185	37.8%	31	58%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CASS4	57091	genome.wustl.edu	37	20	55027941	55027941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020356.3	+1	validated	p.P570L	1.000	66	0%	262	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serine_rich
SLCO4A1	28231	genome.wustl.edu	37	20	61288143	61288143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.A113T	1.000	5	0.000	33	0.364	5	40%	benign(0.008)	tolerated(0.06)	neutral(0.323)	HMMPfam_OATP,superfamily_MFS general substrate transporter
PRIC285	85441	genome.wustl.edu	37	20	62203546	62203546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.A65T	0.000	8	0.000	56	0.411	1	100%	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	NULL
KRTAP11-1	337880	genome.wustl.edu	37	21	32253406	32253406	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175858.2	-1	validated	p.G146	0.056	14	0%	74	40.5%	0	-	-	-	-	HMMPfam_PMG
MRAP	56246	genome.wustl.edu	37	21	33686912	33686912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206898.1	+1	reviewed	p.R86Q	0.008	51	0%	132	25%	9	22.2%	benign(0.091)	tolerated(0.16)	neutral(0.066)	NULL
URB1	9875	genome.wustl.edu	37	21	33694240	33694240	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.Q1785	0.998	4	0.000	77	0.338	4	25%	-	-	-	superfamily_ARM repeat
URB1	9875	genome.wustl.edu	37	21	33694875	33694875	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.K1751	1.000	29	0%	108	30.6%	4	25%	-	-	-	superfamily_ARM repeat
LOC100288232	100288232	genome.wustl.edu	37	21	43274799	43274799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343752.1	+1	model	p.A169T	0.998	4	0.000	19	0.211	1	0%	-	-	-	NULL
SLC37A1	54020	genome.wustl.edu	37	21	43974219	43974219	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018964.3	+1	reviewed	p.K272	0.991	151	0%	165	27.9%	10	50%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SIK1	150094	genome.wustl.edu	37	21	44838264	44838264	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173354.3	-1	validated	p.S540	0.005	5	0.000	25	0.280	3	33.3%	-	-	-	NULL
SIK1	150094	genome.wustl.edu	37	21	44838995	44838995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173354.3	-1	validated	p.E456D	1.000	8	0.000	23	0.652	3	100%	benign(0.054)	tolerated(0.36)	neutral(0.024)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47680752	47680752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.R1179H	0.001	61	0%	289	28.7%	10	60%	benign(0.001)	tolerated(0.13)	neutral(0.253)	NULL
ENSG00000215575	0	genome.wustl.edu	37	22	17063501	17063501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400600	-1	known	p.G17S	0.954	63	0%	115	22.6%	0	-	-	-	-	HMMPfam_CaKB
IGLV4-3	28786	genome.wustl.edu	37	22	23213894	23213894	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390318	+1	known	p.L17	0.001	13	0%	41	70.7%	0	-	-	-	-	NULL
HPS4	89781	genome.wustl.edu	37	22	26864583	26864583	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022081.4	-1	reviewed	p.V201	0.679	28	0%	160	65%	3	100%	-	-	-	NULL
ZC3H7B	23264	genome.wustl.edu	37	22	41735992	41735992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017590.4	+1	reviewed	p.K330R	1.000	16	0%	29	65.5%	3	100%	possibly_damaging(0.556)	tolerated(0.36)	neutral(0.209)	NULL
PKDREJ	10343	genome.wustl.edu	37	22	46657240	46657240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.Q660H	0.999	45	0%	45	40%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_REJ
TUBGCP6	85378	genome.wustl.edu	37	22	50662577	50662577	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	p.K755*	0.982	27	0%	76	64.5%	0	-	-	-	-	HMMPfam_Spc97_Spc98
ASMTL	8623	genome.wustl.edu	37	X	1540671	1540671	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004192.3	-1	reviewed	p.G375	0.990	152	0%	586	22.2%	8	37.5%	-	-	-	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
MXRA5	25878	genome.wustl.edu	37	X	3238160	3238160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.L1856F	0.004	85	0%	235	25.5%	2	100%	benign(0.003)	tolerated(0.07)	neutral(0.319)	HMMPfam_I-set,superfamily_Immunoglobulin
ATXN3L	92552	genome.wustl.edu	37	X	13337838	13337838	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135995.1	-1	validated	p.T72	0.995	246	0.4%	474	22.2%	0	-	-	-	-	HMMPfam_Josephin
GLRA2	2742	genome.wustl.edu	37	X	14625319	14625319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118885.1	+1	reviewed	p.G215A	1.000	254	0%	568	27.5%	0	-	possibly_damaging(0.755)	tolerated(0.27)	neutral(0.312)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
RBBP7	5931	genome.wustl.edu	37	X	16867363	16867363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444437	-1	known	p.R172C	0.001	158	0%	563	45.5%	0	-	benign(0.007)	tolerated(0.07)	neutral(0.319)	NULL
GPR64	10149	genome.wustl.edu	37	X	19031928	19031928	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079858.2	-1	validated	p.I325	0.118	71	0%	574	23.7%	1	100%	-	-	-	NULL
LOC100289205	100289205	genome.wustl.edu	37	X	23353157	23353157	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343809.1	-1	model	p.Q56*	1.000	14	0%	78	26.9%	0	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32486679	32486679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.S1033F	0.820	181	0%	320	18.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
FAM47B	170062	genome.wustl.edu	37	X	34961333	34961333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.H129N	0.005	80	0%	236	28%	0	-	possibly_damaging(0.485)	deleterious(0.01)	deleterious(0.567)	NULL
FAM47C	442444	genome.wustl.edu	37	X	37028177	37028177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.T565I	0.016	77	0%	193	20.2%	0	-	unknown(0)	deleterious(0.03)	-	NULL
ZNF81	347344	genome.wustl.edu	37	X	47775885	47775885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.E614K	0.996	181	0%	322	19.6%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC35A2	7355	genome.wustl.edu	37	X	48761926	48761926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032289.1	-1	provisional	p.H224Y	0.002	23	0%	119	27.7%	19	89.4%	unknown(0)	-	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49062095	49062095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.A1895V	0.999	23	0%	125	22.4%	0	-	benign(0.34)	deleterious(0)	deleterious(0.552)	NULL
SHROOM4	57477	genome.wustl.edu	37	X	50376870	50376870	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020717.3	-1	reviewed	p.Q735*	0.985	48	0%	81	13.6%	0	-	-	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54785189	54785189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.R440C	0.998	25	0%	165	52.7%	0	-	benign(0.186)	deleterious(0)	neutral(0.462)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ZXDA	7789	genome.wustl.edu	37	X	57935263	57935263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007156.4	-1	reviewed	p.S531F	1.000	137	0%	487	17%	1	0%	probably_damaging(0.978)	tolerated(0.09)	deleterious(0.717)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
EFNB1	1947	genome.wustl.edu	37	X	68058623	68058623	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004429.4	+1	reviewed	p.L98	1.000	29	0%	200	22.5%	5	100%	-	-	-	HMMPfam_Ephrin,superfamily_Cupredoxin
PGK1	5230	genome.wustl.edu	37	X	77380410	77380410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000291.3	+1	reviewed	p.E326K	1.000	96	0%	519	48.9%	247	0%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_PGK,superfamily_Phosphoglycerate kinase
POF1B	79983	genome.wustl.edu	37	X	84537293	84537293	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.L560	0.992	359	0%	684	22.1%	7	0%	-	-	-	NULL
RAB40AL	282808	genome.wustl.edu	37	X	102192955	102192955	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031834.1	+1	reviewed	p.R237*	1.000	115	0%	398	24.9%	0	-	-	-	-	NULL
GPR119	139760	genome.wustl.edu	37	X	129518744	129518744	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178471.2	-1	reviewed	p.T226	0.969	31	0%	178	41.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MIR450A1	554214	genome.wustl.edu	37	X	133674415	133674415	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362262	-1	known	NULL	0.957	467	0%	603	25.2%	0	-	-	-	-	-
ATP11C	286410	genome.wustl.edu	37	X	138823216	138823216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.H1026R	1.000	175	0%	291	26.1%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151092411	151092411	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011548.1	+1	reviewed	p.E92V	0.000	68	0%	121	22.3%	3	33.3%	probably_damaging(0.977)	tolerated(0.16)	deleterious(0.478)	NULL
ZNF275	10838	genome.wustl.edu	37	X	152612813	152612813	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080485.2	+1	validated	p.L224I	0.284	36	0%	170	20%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TREX2	11219	genome.wustl.edu	37	X	152710760	152710760	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080701.3	-1	reviewed	p.P43	0.000	7	0.000	96	0.240	0	-	-	-	-	HMMSmart_EXOIII,superfamily_RNaseH_fold,HMMPfam_Exonuc_X-T
ABCD1	215	genome.wustl.edu	37	X	153005561	153005561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000033.3	+1	reviewed	p.H502Y	1.000	15	0%	99	20.2%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540
OPN1LW	5956	genome.wustl.edu	37	X	153409871	153409871	+	Splice_Site	SNP	T	T	A	novel		TCGA-BS-A0TE-01A-11D-A10B-09	TCGA-BS-A0TE-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020061.4	+1	reviewed	e1+2	1.000	36	0%	253	22.5%	0	-	-	-	-	-
