Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PUSL1	126789	genome.wustl.edu	37	1	1244876	1244876	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153339.1	+1	provisional	p.R122	0.060	8	0.000	30	0.400	11	36.3%	-	-	-	HMMPfam_PseudoU_synth_1,superfamily_Pseudouridine synthase
CCNL2	81669	genome.wustl.edu	37	1	1325671	1325671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408952	-1	known	p.V92I	1.000	43	0%	126	53.2%	325	48.3%	unknown(0)	tolerated(0.08)	-	NULL
KIAA1751	85452	genome.wustl.edu	37	1	1888075	1888075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080484.1	-1	predicted	p.Q667R	0.000	19	0%	79	38%	0	-	probably_damaging(0.959)	tolerated(0.84)	neutral(0.403)	NULL
MEGF6	1953	genome.wustl.edu	37	1	3407477	3407477	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001409.3	-1	validated	p.S1521	0.962	11	0%	60	56.7%	0	-	-	-	-	superfamily_EGF/Laminin
MEGF6	1953	genome.wustl.edu	37	1	3422687	3422687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001409.3	-1	validated	p.R635C	1.000	7	0.000	41	0.512	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00180,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
CHD5	26038	genome.wustl.edu	37	1	6185196	6185196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.V1453A	1.000	16	0%	41	31.7%	0	-	possibly_damaging(0.81)	tolerated(0.05)	deleterious(0.650)	HMMPfam_DUF1086
ESPN	83715	genome.wustl.edu	37	1	6505946	6505946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031475.2	+1	reviewed	p.Q472R	1.000	7	0.000	19	0.526	0	-	possibly_damaging(0.941)	deleterious(0.01)	deleterious(0.792)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	6880285	6880285	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.V30	1.000	91	0%	96	41.7%	146	55.4%	-	-	-	NULL
RERE	473	genome.wustl.edu	37	1	8526014	8526014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.I392V	1.000	11	0%	33	51.5%	4	25%	unknown(0)	tolerated(0.26)	-	HMMSmart_SM00717,superfamily_Homeodomain-like
H6PD	9563	genome.wustl.edu	37	1	9324383	9324383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004285.3	+1	reviewed	p.W611R	1.000	5	0.000	15	0.533	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glucosamine_iso,superfamily_SSF100950
CLCN6	1185	genome.wustl.edu	37	1	11888618	11888618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.C353F	1.000	85	0%	136	51.5%	0	-	probably_damaging(0.964)	tolerated(0.69)	neutral(0.408)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
PLOD1	5351	genome.wustl.edu	37	1	12027091	12027091	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000302.2	+1	reviewed	p.C566	0.998	38	0%	169	43.2%	135	40.7%	-	-	-	HMMSmart_P4Hc
FHAD1	114827	genome.wustl.edu	37	1	15627815	15627815	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052929.1	+1	provisional	p.S265R	0.059	43	0%	49	44.9%	0	-	probably_damaging(0.959)	tolerated(0.66)	neutral(0.405)	NULL
FHAD1	114827	genome.wustl.edu	37	1	15627853	15627853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052929.1	+1	provisional	p.N277K	0.000	40	0%	45	51.1%	0	-	benign(0.006)	tolerated(0.73)	neutral(0.002)	NULL
PLEKHM2	23207	genome.wustl.edu	37	1	16051897	16051897	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015164.2	+1	validated	p.T266	0.988	8	0.000	45	0.600	6	16.6%	-	-	-	NULL
IGSF21	84966	genome.wustl.edu	37	1	18618428	18618428	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412684	+1	known	p.T37A	0.836	21	0%	45	35.6%	0	-	-	-	-	NULL
TAS1R2	80834	genome.wustl.edu	37	1	19180815	19180815	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.R383	0.072	24	0%	89	42.7%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
ECE1	1889	genome.wustl.edu	37	1	21553687	21553687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001397.2	-1	reviewed	p.V605A	1.000	58	0%	109	36.7%	10	30%	possibly_damaging(0.462)	deleterious(0)	deleterious(0.596)	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
EPHB2	2048	genome.wustl.edu	37	1	23233421	23233421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004442.6	+1	reviewed	p.E704*	1.000	8	0.000	25	0.400	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
KDM1A	23028	genome.wustl.edu	37	1	23397737	23397737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015013.3	+1	reviewed	p.K454R	1.000	52	0%	44	50%	6	50%	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
LUZP1	7798	genome.wustl.edu	37	1	23417942	23417943	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.T938fs	0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
LUZP1	7798	genome.wustl.edu	37	1	23418835	23418835	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.P640	0.827	52	0%	91	40.7%	1	100%	-	-	-	NULL
HTR1D	3352	genome.wustl.edu	37	1	23520303	23520303	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000864.4	-1	validated	p.Y137S	1.000	55	0%	103	46.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
RHCE	6006	genome.wustl.edu	37	1	25729104	25729104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020485.3	-1	reviewed	p.I157V	0.000	115	0%	227	46.3%	0	-	benign(0.202)	tolerated(0.56)	neutral(0.026)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
EXTL1	2134	genome.wustl.edu	37	1	26355719	26355719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004455.2	+1	reviewed	p.F272S	1.000	13	0%	33	51.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Exostosin
ZNF683	257101	genome.wustl.edu	37	1	26688356	26688356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114759.1	-1	validated	p.G434V	0.000	47	0%	60	48.3%	17	0%	possibly_damaging(0.616)	deleterious(0.04)	deleterious(0.564)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27088666	27088666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.M759V	1.000	38	0%	66	40.9%	0	-	benign(0.01)	tolerated(0.07)	neutral(0.320)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27105564	27105564	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.I1725	0.995	57	0%	124	42.7%	8	37.5%	-	-	-	NULL
SLC9A1	6548	genome.wustl.edu	37	1	27429171	27429171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003047.3	-1	validated	p.K547E	1.000	17	0%	55	40%	4	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
COL16A1	1307	genome.wustl.edu	37	1	32167723	32167723	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001856.3	-1	reviewed	p.T24	1.000	36	0%	99	45.5%	0	-	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34190132	34190132	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.L917	1.000	16	0%	27	48.1%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
KIAA0319L	79932	genome.wustl.edu	37	1	35915518	35915518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024874.4	-1	reviewed	p.D768G	1.000	79	0%	56	44.6%	4	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00089,superfamily_PKD domain
CLSPN	63967	genome.wustl.edu	37	1	36202541	36202541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.A1295T	0.859	44	0%	65	35.4%	0	-	possibly_damaging(0.774)	tolerated(0.59)	neutral(0.293)	NULL
EIF2C4	192670	genome.wustl.edu	37	1	36282617	36282617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017629.2	+1	reviewed	p.K52E	1.000	88	0%	103	30.1%	0	-	benign(0.004)	tolerated(0.09)	neutral(0.296)	superfamily_PAZ domain
RRAGC	64121	genome.wustl.edu	37	1	39318152	39318152	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022157.2	-1	provisional	p.L217R	1.000	133	0%	132	48.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Gtr1_RagA,superfamily_SSF52540
MACF1	23499	genome.wustl.edu	37	1	39800067	39800067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.L1043M	0.008	67	0%	53	39.6%	0	-	possibly_damaging(0.437)	-	-	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399
MACF1	23499	genome.wustl.edu	37	1	39851548	39851548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.K3204R	1.000	28	0%	49	26.5%	1	0%	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMSmart_SPEC,superfamily_Spectrin
CAP1	10487	genome.wustl.edu	37	1	40530026	40530026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105530.1	+1	reviewed	p.L141R	1.000	100	0%	79	46.8%	13	7.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
RLF	6018	genome.wustl.edu	37	1	40701779	40701779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.F469V	1.000	63	0%	28	35.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RLF	6018	genome.wustl.edu	37	1	40703623	40703623	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012421.3	+1	validated	p.G1083	0.999	83	0%	67	47.8%	2	0%	-	-	-	NULL
SCMH1	22955	genome.wustl.edu	37	1	41493882	41493882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031694.2	-1	validated	p.K656R	1.000	5	0.000	37	0.378	70	54.2%	possibly_damaging(0.647)	tolerated(0.07)	deleterious(0.546)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
FOXJ3	22887	genome.wustl.edu	37	1	42647691	42647692	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014947.3	-1	validated	p.N550fs	0.996:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC30	728621	genome.wustl.edu	37	1	43042837	43042837	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080850.2	+1	validated	p.S334	0.991	110	0%	45	42.2%	0	-	-	-	-	NULL
TIE1	7075	genome.wustl.edu	37	1	43773174	43773174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005424.2	+1	provisional	p.T282A	1.000	12	0%	46	47.8%	0	-	benign(0.021)	tolerated(0.15)	neutral(0.242)	NULL
PTPRF	5792	genome.wustl.edu	37	1	44054579	44054579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.E286G	1.000	20	0%	94	46.8%	4	25%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
MAST2	23139	genome.wustl.edu	37	1	46348057	46348057	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015112.2	+1	validated	p.R164	1.000	205	0%	124	41.1%	3	33.3%	-	-	-	NULL
POMGNT1	55624	genome.wustl.edu	37	1	46655562	46655562	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017739.3	-1	reviewed	p.K583	0.930	29	0%	96	43.8%	58	60.3%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
DMBX1	127343	genome.wustl.edu	37	1	46976311	46976311	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147192.2	+1	reviewed	p.P111	0.982	14	0%	45	57.8%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
CYP4X1	260293	genome.wustl.edu	37	1	47498948	47498948	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178033.1	+1	reviewed	p.F134V	1.000	69	0%	58	31%	0	-	benign(0.184)	tolerated(0.09)	neutral(0.314)	HMMPfam_p450,superfamily_Cytochrome P450
BEND5	79656	genome.wustl.edu	37	1	49201967	49201967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024603.2	-1	validated	p.K351R	1.000	130	0%	98	45.9%	16	50%	benign(0.094)	tolerated(0.78)	neutral(0.008)	HMMPfam_BEN
AGBL4	84871	genome.wustl.edu	37	1	50162986	50162986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032785.3	-1	validated	p.Q94R	1.000	116	0%	67	37.3%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ZFYVE9	9372	genome.wustl.edu	37	1	52698922	52698922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004799.2	+1	reviewed	p.V15A	1.000	217	0%	126	27.8%	2	50%	benign(0.418)	deleterious(0)	deleterious(0.580)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52889651	52889651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.R1632G	1.000	44	0%	48	43.8%	34	35.2%	possibly_damaging(0.833)	deleterious(0)	deleterious(0.762)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52891081	52891081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.Q1604K	1.000	73	0%	81	38.3%	27	29.6%	benign(0.205)	deleterious(0)	neutral(0.465)	NULL
ZCCHC11	23318	genome.wustl.edu	37	1	52924016	52924016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.L1143I	1.000	57	0%	58	46.6%	4	25%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_PAP/OAS1 substrate-binding domain
GPX7	2882	genome.wustl.edu	37	1	53072423	53072423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015696.4	+1	validated	p.Q69R	1.000	19	0%	67	46.3%	11	27.2%	benign(0.125)	tolerated(0.14)	neutral(0.260)	HMMPfam_GSHPx,superfamily_Thiordxn-like_fd
CPT2	1376	genome.wustl.edu	37	1	53676885	53676885	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000098.2	+1	reviewed	p.S513	0.002	16	0%	35	42.9%	8	37.5%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
PARS2	25973	genome.wustl.edu	37	1	55223427	55223427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152268.3	-1	validated	p.T470A	0.658	17	0%	51	37.3%	1	100%	benign(0.012)	tolerated(0.8)	neutral(0.001)	superfamily_Anticodon-binding domain of Class II aaRS
C1orf168	199920	genome.wustl.edu	37	1	57207872	57207872	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004303.4	-1	validated	p.E522	0.999	237	0%	108	35.2%	1	100%	-	-	-	NULL
C8A	731	genome.wustl.edu	37	1	57351757	57351757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000562.2	+1	reviewed	p.G338D	1.000	70	0%	36	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN
INADL	10207	genome.wustl.edu	37	1	62232117	62232117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176877.2	+1	reviewed	p.F119S	0.990	156	0.6%	106	56.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PDZ domain-like
JAK1	3716	genome.wustl.edu	37	1	65316557	65316557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.Q562R	1.000	21	0%	62	33.9%	3	33.3%	benign(0)	tolerated(0.53)	neutral(0.007)	superfamily_SSF55550
SGIP1	84251	genome.wustl.edu	37	1	67108512	67108512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032291.2	+1	validated	p.E83G	1.000	55	0%	44	38.6%	1	0%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	NULL
LRRC7	57554	genome.wustl.edu	37	1	70573494	70573494	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.G1497	0.941	82	0%	86	45.3%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
HHLA3	11147	genome.wustl.edu	37	1	70833370	70833370	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031693.2	+1	validated	p.S109T	0.517	126	0%	74	54.1%	137	62%	unknown(0)	-	-	NULL
ZRANB2	9406	genome.wustl.edu	37	1	71544238	71544238	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203350.1	-1	validated	p.T40	1.000	127	0%	80	51.2%	6	50%	-	-	-	HMMPfam_zf-RanBP,superfamily_Znf265 first zinc-finger domain
TYW3	127253	genome.wustl.edu	37	1	75202288	75202288	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138467.2	+1	validated	p.L79	0.971	90	0%	120	40%	4	25%	-	-	-	HMMPfam_TYW3,superfamily_DUF207
ZZZ3	26009	genome.wustl.edu	37	1	78050242	78050242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015534.4	-1	provisional	p.L535P	1.000	187	0%	172	43.6%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM73A	374986	genome.wustl.edu	37	1	78332067	78332067	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198549.2	+1	predicted	p.Q518	0.455	131	0%	236	45.8%	1	100%	-	-	-	HMMPfam_DUF2217
CLCA2	9635	genome.wustl.edu	37	1	86921185	86921185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006536.5	+1	reviewed	p.K936R	0.001	84	0%	73	49.3%	0	-	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
CCBL2	56267	genome.wustl.edu	37	1	89427824	89427824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000260508	-1	known	p.I153T	1.000	99	0%	56	50%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
LOC100288649	100288649	genome.wustl.edu	37	1	89525904	89525904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342055.1	+1	model	p.G93S	0.741	42	0%	49	30.6%	3	0%	-	-	-	NULL
GBP7	388646	genome.wustl.edu	37	1	89613446	89613446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207398.2	-1	validated	p.K390R	0.002	118	0%	53	37.7%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
GBP5	115362	genome.wustl.edu	37	1	89732273	89732273	+	Splice_Site	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134486.1	-1	validated	e5-2	0.902	91	0%	105	45.7%	0	-	-	-	-	-
GBP5	115362	genome.wustl.edu	37	1	89732835	89732835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134486.1	-1	validated	p.N144D	0.999	35	0%	70	48.6%	1	0%	benign(0.001)	tolerated(0.05)	neutral(0.345)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1107	23285	genome.wustl.edu	37	1	92649686	92649686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015237.2	+1	validated	p.Q1288H	1.000	61	0%	61	37.7%	5	60%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
CCDC18	343099	genome.wustl.edu	37	1	93667511	93667511	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206886.2	+1	validated	p.Q372P	0.997	110	0%	99	45.5%	0	-	benign(0.314)	tolerated(0.25)	neutral(0.135)	NULL
ABCD3	5825	genome.wustl.edu	37	1	94955469	94955469	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002858.3	+1	reviewed	p.G420	0.160	162	0.6%	83	42.2%	2	0%	-	-	-	NULL
RWDD3	25950	genome.wustl.edu	37	1	95712133	95712133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429514	+1	known	p.C173R	1.000	246	0%	155	44.5%	15	40%	-	-	-	NULL
DPYD	1806	genome.wustl.edu	37	1	98144657	98144657	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000110.3	-1	reviewed	p.G282*	1.000	65	0%	49	36.7%	0	-	-	-	-	HMMPfam_Pyr_redox_2,superfamily_SSF51971
HIAT1	64645	genome.wustl.edu	37	1	100527433	100527433	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421661	+1	known	p.D77Y	1.000	538	0%	324	37.7%	2	50%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
LOC126987	126987	genome.wustl.edu	37	1	106623385	106623385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342097.1	-1	model	p.T225I	0.511	4	0.000	24	0.542	0	-	-	-	-	NULL
SLC25A24	29957	genome.wustl.edu	37	1	108690937	108690937	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013386.3	-1	validated	p.A298	0.855	232	0%	140	46.4%	0	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
PRPF38B	55119	genome.wustl.edu	37	1	109241906	109241906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018061.2	+1	validated	p.Q302R	1.000	21	0%	42	50%	28	46.4%	unknown(0)	tolerated(0.2)	-	NULL
AKNAD1	254268	genome.wustl.edu	37	1	109366021	109366021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152763.3	-1	validated	p.S713Y	0.009	219	0%	256	42.2%	0	-	benign(0)	tolerated(0.92)	-	NULL
WDR47	22911	genome.wustl.edu	37	1	109553951	109553951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142550.1	-1	validated	p.D246E	0.997	105	0%	91	48.4%	0	-	benign(0.009)	tolerated(0.17)	neutral(0.059)	NULL
KIAA1324	57535	genome.wustl.edu	37	1	109727754	109727754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020775.3	+1	validated	p.E347G	1.000	12	0%	45	60%	13	7.6%	probably_damaging(0.969)	tolerated(0.12)	deleterious(0.672)	superfamily_Growth factor receptor domain
SARS	6301	genome.wustl.edu	37	1	109778706	109778706	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006513.2	+1	reviewed	p.Y359*	1.000	36	0%	49	34.7%	26	23%	-	-	-	HMMPfam_tRNA-synt_2b,superfamily_Class II aaRS and biotin synthetases
CYB561D1	284613	genome.wustl.edu	37	1	110038621	110038621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134400.1	+1	validated	p.C166R	1.000	22	0%	81	39.5%	1	100%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Cytochrom_B561,HMMSmart_B561
AMPD2	271	genome.wustl.edu	37	1	110170130	110170130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004037.6	+1	validated	p.N368D	1.000	47	0%	275	44.4%	10	20%	benign(0.005)	tolerated(1)	-	NULL
CD53	963	genome.wustl.edu	37	1	111435117	111435118	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000560.3	+1	reviewed	p.M72fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Tetraspannin,PatternScan_TM4_1
DRAM2	128338	genome.wustl.edu	37	1	111667415	111667415	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178454.4	-1	validated	p.L96	1.000	85	0%	70	54.3%	11	72.7%	-	-	-	HMMPfam_Frag1
DENND2D	79961	genome.wustl.edu	37	1	111731340	111731340	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024901.3	-1	provisional	p.G361	0.011	53	0%	64	48.4%	17	41.1%	-	-	-	NULL
LOC100287536	100287536	genome.wustl.edu	37	1	111983882	111983882	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342100.1	+1	model	p.W76R	0.467	45	0%	96	39.6%	75	46.6%	-	-	-	NULL
MOV10	4343	genome.wustl.edu	37	1	113234384	113234384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130079.1	+1	validated	p.S312R	0.692	23	0%	61	57.4%	8	25%	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
MAGI3	260425	genome.wustl.edu	37	1	114184795	114184795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142782.1	+1	validated	p.N541K	1.000	72	1.4%	72	38.9%	0	-	benign(0.122)	tolerated(0.89)	neutral(0.010)	NULL
NRAS	4893	genome.wustl.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	T	C	rs11554290	byCluster	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002524.3	-1	reviewed	p.Q61R	1.000	75	0%	178	40.4%	2	50%	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
IGSF3	3321	genome.wustl.edu	37	1	117122362	117122362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001542.2	-1	validated	p.K1016E	0.997	6	0.000	25	0.280	2	0%	benign(0.01)	tolerated(1)	neutral(0.001)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
WARS2	10352	genome.wustl.edu	37	1	119575710	119575710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015836.3	-1	reviewed	p.K303E	1.000	45	0%	126	34.1%	23	39.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
PDE4DIP	9659	genome.wustl.edu	37	1	144854571	144854571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.L2300R	0.984	196	0%	193	20.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITGA10	8515	genome.wustl.edu	37	1	145539391	145539391	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003637.3	+1	reviewed	p.T1020	0.000	35	0%	73	54.8%	6	33.3%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
GPR89A	653519	genome.wustl.edu	37	1	145804268	145804268	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097612.1	-1	validated	p.Y171	1.000	280	0%	375	15.5%	0	-	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150923195	150923195	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145415.1	+1	reviewed	p.R614	0.481	56	0%	80	35%	3	66.6%	-	-	-	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
POGZ	23126	genome.wustl.edu	37	1	151384210	151384210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015100.2	-1	reviewed	p.D606G	0.996	23	0%	63	50.8%	6	66.6%	probably_damaging(0.978)	tolerated(0.33)	neutral(0.445)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CGN	57530	genome.wustl.edu	37	1	151503053	151503053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	p.R801L	0.447	9	0.000	18	0.444	2	50%	possibly_damaging(0.938)	deleterious(0.02)	deleterious(0.766)	NULL
S100A10	6281	genome.wustl.edu	37	1	151955722	151955722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002966.2	-1	reviewed	p.S71G	1.000	110	0%	162	45.1%	443	44.6%	benign(0)	deleterious(0)	neutral(0.445)	PatternScan_S100_CABP,superfamily_EF-hand
TCHHL1	126637	genome.wustl.edu	37	1	152059684	152059684	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008536.1	-1	provisional	p.D158	0.001	177	0%	219	37.4%	0	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152276158	152276158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.Q3735R	0.002	74	0%	146	40.4%	0	-	benign(0.34)	tolerated(0.43)	neutral(0.121)	NULL
SPRR2E	6704	genome.wustl.edu	37	1	153066134	153066134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024209.2	-1	validated	p.C32R	0.987	101	0%	130	47.7%	1	0%	unknown(0)	-	-	NULL
ILF2	3608	genome.wustl.edu	37	1	153638139	153638139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004515.2	-1	reviewed	p.V154F	1.000	81	0%	145	48.3%	33	45.4%	probably_damaging(0.956)	tolerated(0.12)	deleterious(0.660)	HMMPfam_DZF,HMMSmart_SM00572,superfamily_Nucleotidyltransferase
DENND4B	9909	genome.wustl.edu	37	1	153914441	153914441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.V320A	1.000	13	0%	35	54.3%	12	75%	possibly_damaging(0.577)	deleterious(0)	deleterious(0.643)	HMMPfam_DENN,HMMSmart_DENN
NUP210L	91181	genome.wustl.edu	37	1	154091262	154091262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207308.2	-1	validated	p.K450T	0.001	223	0%	167	48.5%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	superfamily_Invasin_intimin
ENSG00000246604	0	genome.wustl.edu	37	1	154184768	154184768	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502106	+1	novel	NULL	0.000	21	0%	57	40.4%	20	65%	-	-	-	-
ASH1L	55870	genome.wustl.edu	37	1	155340697	155340697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.E2137G	1.000	104	0%	172	41.9%	2	50%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_SET,HMMSmart_SM00570,superfamily_SET domain
ASH1L	55870	genome.wustl.edu	37	1	155448178	155448178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.S1495P	1.000	116	0%	110	47.3%	1	100%	possibly_damaging(0.836)	deleterious(0.03)	deleterious(0.684)	NULL
ASH1L	55870	genome.wustl.edu	37	1	155451536	155451536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.K375N	0.618	139	0%	94	39.4%	1	100%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
SMG5	23381	genome.wustl.edu	37	1	156228872	156228872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015327.2	-1	validated	p.E789G	1.000	6	0.000	27	0.333	17	52.9%	possibly_damaging(0.818)	tolerated(0.16)	neutral(0.368)	NULL
ARHGEF11	9826	genome.wustl.edu	37	1	156908253	156908253	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198236.1	-1	reviewed	p.S1383	0.997	43	0%	69	59.4%	5	40%	-	-	-	NULL
OR10R2	343406	genome.wustl.edu	37	1	158450506	158450506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004472.1	+1	provisional	p.L280R	0.997	115	0%	77	48.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158589074	158589074	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.F2156	1.000	145	0%	127	39.4%	0	-	-	-	-	superfamily_Spectrin repeat
OR6K3	391114	genome.wustl.edu	37	1	158687692	158687692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005327.2	-1	validated	p.W88R	0.025	49	0%	62	40.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_7tm_1,superfamily_SSF81321
CCDC19	25790	genome.wustl.edu	37	1	159863068	159863068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012337.2	-1	validated	p.S11P	0.995	37	0%	80	38.8%	1	0%	benign(0.396)	deleterious(0.04)	deleterious(0.476)	NULL
PEX19	5824	genome.wustl.edu	37	1	160249982	160249982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002857.3	-1	reviewed	p.K217Q	1.000	54	0%	93	47.3%	5	60%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Pex19
COPA	1314	genome.wustl.edu	37	1	160265890	160265890	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.A780	0.993	173	0%	146	37.7%	15	33.3%	-	-	-	HMMPfam_Coatomer_WDAD
CD244	51744	genome.wustl.edu	37	1	160811258	160811258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016382.3	-1	reviewed	p.R133C	0.000	35	0%	48	37.5%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
F11R	50848	genome.wustl.edu	37	1	160969739	160969739	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016946.4	-1	reviewed	p.T207	0.008	24	0%	67	38.8%	10	40%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
NDUFS2	4720	genome.wustl.edu	37	1	161179710	161179710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004550.4	+1	reviewed	p.G231R	1.000	26	0%	65	38.5%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Complex1_49kDa,superfamily_SSF56762
HSPA6	3310	genome.wustl.edu	37	1	161496060	161496060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002155.3	+1	validated	p.V538M	0.874	45	0%	133	41.4%	12	0%	possibly_damaging(0.828)	deleterious(0.01)	deleterious(0.720)	HMMPfam_HSP70,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain
OLFML2B	25903	genome.wustl.edu	37	1	161993166	161993166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.W19R	0.414	27	0%	100	37%	0	-	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
NUF2	83540	genome.wustl.edu	37	1	163325243	163325243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031423.3	+1	reviewed	p.F460S	0.120	159	0%	83	51.8%	6	50%	benign(0.071)	tolerated(0.11)	neutral(0.277)	NULL
ALDH9A1	223	genome.wustl.edu	37	1	165632326	165632326	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000696.3	-1	reviewed	p.T506	0.001	95	0%	107	27.1%	37	18.9%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
POU2F1	5451	genome.wustl.edu	37	1	167365649	167365649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002697.2	+1	provisional	p.W349R	1.000	99	0%	123	53.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains
DCAF6	55827	genome.wustl.edu	37	1	168035689	168035689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018442.2	+1	validated	p.K820E	1.000	81	0%	71	33.8%	35	51.4%	possibly_damaging(0.797)	tolerated(0.46)	neutral(0.311)	superfamily_WD40_like
C1orf112	55732	genome.wustl.edu	37	1	169799838	169799838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.Y467D	0.735	331	0%	123	48.8%	2	50%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
PRRC2C	23215	genome.wustl.edu	37	1	171509373	171509373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.R921Q	0.722	63	0%	61	44.3%	1	0%	probably_damaging(0.995)	tolerated(0.36)	deleterious(0.478)	NULL
SLC9A11	284525	genome.wustl.edu	37	1	173474404	173474404	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178527.3	-1	validated	p.S1098R	0.000	222	0%	109	37.6%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
SERPINC1	462	genome.wustl.edu	37	1	173873033	173873033	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000488.3	-1	reviewed	p.V463	0.000	129	0%	73	38.4%	0	-	-	-	-	superfamily_Prot_inh_serpin
RC3H1	149041	genome.wustl.edu	37	1	173921239	173921239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172071.2	-1	validated	p.K803R	1.000	168	0%	161	39.1%	1	0%	possibly_damaging(0.679)	tolerated(0.72)	neutral(0.243)	NULL
RABGAP1L	9910	genome.wustl.edu	37	1	174247839	174247839	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014857.3	+1	validated	p.R415	0.992	104	0%	148	25%	1	0%	-	-	-	NULL
TNR	7143	genome.wustl.edu	37	1	175375649	175375649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.V68L	1.000	64	0%	150	14.7%	0	-	benign(0.138)	tolerated(0.07)	neutral(0.331)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176564104	176564104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.V455A	0.002	26	0%	73	45.2%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176708891	176708891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.S1310P	1.000	35	0%	37	43.2%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
PAPPA2	60676	genome.wustl.edu	37	1	176738760	176738760	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020318.2	+1	validated	p.T1447	0.003	144	0%	76	43.4%	0	-	-	-	-	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
TOR1AIP2	163590	genome.wustl.edu	37	1	179815518	179815518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145034.3	-1	validated	p.F367	0.969	78	0%	103	48.5%	1	100%	-	-	-	HMMPfam_LAP1C
RGSL1	353299	genome.wustl.edu	37	1	182443440	182443440	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137669.1	+1	validated	p.Q398	0.074	71	0%	49	46.9%	0	-	-	-	-	superfamily_Regulator of G-protein signaling RGS
DHX9	1660	genome.wustl.edu	37	1	182828234	182828234	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.Q374	0.978	117	0%	86	43%	5	60%	-	-	-	NULL
LAMC1	3915	genome.wustl.edu	37	1	183087278	183087278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.R663G	1.000	125	0%	127	23.6%	0	-	benign(0.052)	tolerated(0.15)	neutral(0.244)	HMMPfam_Laminin_B,superfamily_Grow_fac_recept,HMMSmart_LamB
LAMC1	3915	genome.wustl.edu	37	1	183099621	183099621	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.T1141	1.000	54	0%	67	46.3%	2	0%	-	-	-	NULL
HMCN1	83872	genome.wustl.edu	37	1	186140524	186140524	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.I5210M	0.993	89	0%	85	40%	0	-	benign(0.323)	tolerated(0.19)	neutral(0.151)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PLA2G4A	5321	genome.wustl.edu	37	1	186957617	186957617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.F743L	0.980	177	0%	79	45.6%	71	43.6%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
CDC73	79577	genome.wustl.edu	37	1	193094329	193094329	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024529.4	+1	reviewed	p.V73	0.680	162	0%	310	38.4%	5	20%	-	-	-	NULL
KCNT2	343450	genome.wustl.edu	37	1	196288638	196288638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198503.2	-1	validated	p.Y775C	1.000	108	0%	31	48.4%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
CFHR2	3080	genome.wustl.edu	37	1	196928111	196928111	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005666.2	+1	validated	p.E238	0.455	118	0.8%	60	51.7%	0	-	-	-	-	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ASPM	259266	genome.wustl.edu	37	1	197070193	197070193	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.T2730P	0.000	48	0%	19	36.8%	0	-	benign(0.064)	tolerated(0.15)	neutral(0.245)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZBTB41	360023	genome.wustl.edu	37	1	197128703	197128703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.L839R	0.297	226	0%	212	40.6%	3	0%	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	NULL
FAM58BP	339521	genome.wustl.edu	37	1	200182862	200182862	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.T57	0.997	69	0%	188	46.8%	0	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
KIF14	9928	genome.wustl.edu	37	1	200550398	200550398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014875.2	-1	validated	p.K1089R	1.000	113	0%	131	41.2%	0	-	possibly_damaging(0.931)	tolerated(0.15)	deleterious(0.619)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200811148	200811148	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.E318D	0.988	398	0%	293	46.4%	2	0%	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	superfamily_Calponin-homology domain CH-domain
PKP1	5317	genome.wustl.edu	37	1	201282366	201282366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	p.S127G	0.361	12	0%	14	35.7%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
MFSD4	148808	genome.wustl.edu	37	1	205553189	205553189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181644.4	+1	validated	p.E266G	1.000	20	0%	85	43.5%	1	100%	possibly_damaging(0.478)	deleterious(0.02)	deleterious(0.541)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
C1orf186	440712	genome.wustl.edu	37	1	206239520	206239520	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331555	-1	known	p.N126	0.000	118	0.8%	130	40%	68	60.2%	-	-	-	NULL
IL24	11009	genome.wustl.edu	37	1	207075402	207075402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480741	+1	known	p.G56E	0.005	45	0%	114	45.6%	0	-	unknown(0)	-	-	NULL
CR1L	1379	genome.wustl.edu	37	1	207850821	207850821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175710.1	+1	validated	p.N62T	0.001	120	0%	178	42.7%	1	0%	benign(0.101)	tolerated(0.14)	neutral(0.257)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
INTS7	25896	genome.wustl.edu	37	1	212120019	212120019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015434.2	-1	provisional	p.I782T	1.000	154	0%	105	47.6%	2	50%	possibly_damaging(0.918)	tolerated(0.42)	neutral(0.383)	NULL
TMEM206	55248	genome.wustl.edu	37	1	212538612	212538612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018252.2	-1	validated	p.K333R	1.000	298	0%	206	36.4%	7	28.5%	probably_damaging(0.991)	tolerated(0.32)	neutral(0.468)	NULL
C1orf227	149643	genome.wustl.edu	37	1	213009355	213009355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024601.2	-1	predicted	p.V46A	0.183	129	0%	81	63%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
RPS6KC1	26750	genome.wustl.edu	37	1	213415093	213415094	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.S759fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
PROX1	5629	genome.wustl.edu	37	1	214171568	214171568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002763.3	+1	provisional	p.D564Y	1.000	37	0%	67	50.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Prox1
CENPF	1063	genome.wustl.edu	37	1	214795546	214795546	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016343.3	+1	reviewed	p.I330	0.002	211	0%	109	38.5%	0	-	-	-	-	NULL
USH2A	7399	genome.wustl.edu	37	1	216074101	216074101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.L2483I	0.168	46	0%	46	41.3%	0	-	benign(0.089)	deleterious(0.05)	neutral(0.352)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
USH2A	7399	genome.wustl.edu	37	1	216595196	216595196	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206933.2	-1	reviewed	p.V161	1.000	55	0%	57	40.4%	0	-	-	-	-	HMMSmart_SM00560,superfamily_Concanavalin A-like lectins/glucanases
LYPLAL1	127018	genome.wustl.edu	37	1	219366581	219366581	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138794.3	+1	validated	p.R117	1.000	124	0%	54	27.8%	1	0%	-	-	-	HMMPfam_Abhydrolase_2,superfamily_alpha/beta-Hydrolases
BROX	148362	genome.wustl.edu	37	1	222903388	222903388	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144695.2	+1	validated	p.A286	0.965	65	0%	75	38.7%	1	0%	-	-	-	HMMPfam_BRO1
DNAH14	127602	genome.wustl.edu	37	1	225230779	225230779	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001373.1	+1	validated	p.S577	0.003	113	0%	57	36.8%	0	-	-	-	-	NULL
C1orf55	163859	genome.wustl.edu	37	1	226180701	226180701	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152608.3	-1	validated	p.F81V	1.000	37	0%	63	44.4%	1	100%	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	NULL
LOC391169	391169	genome.wustl.edu	37	1	226681097	226681097	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_039983.2	-1	model	NULL	0.019	39	0%	34	41.2%	0	-	-	-	-	-
PSEN2	5664	genome.wustl.edu	37	1	227076664	227076664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000447.2	+1	reviewed	p.M234T	1.000	32	0%	127	47.2%	9	77.7%	benign(0.008)	tolerated(0.29)	neutral(0.029)	HMMPfam_Presenilin,HMMSmart_SM00730
CDC42BPA	8476	genome.wustl.edu	37	1	227288818	227288818	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003607.3	-1	reviewed	p.E708D	1.000	247	0%	106	50.9%	0	-	benign(0.002)	tolerated(0.12)	neutral(0.261)	NULL
WNT9A	7483	genome.wustl.edu	37	1	228113071	228113071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003395.2	-1	validated	p.L82P	1.000	4	0.000	11	0.455	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_wnt,HMMSmart_WNT1
OBSCN	84033	genome.wustl.edu	37	1	228461571	228461571	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098623.1	+1	reviewed	p.S1746	0.000	13	0%	46	52.2%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
C1orf96	126731	genome.wustl.edu	37	1	229462599	229462599	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145257.3	-1	validated	p.S174	0.039	412	0.2%	360	43.1%	1	0%	-	-	-	NULL
NUP133	55746	genome.wustl.edu	37	1	229641811	229641811	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018230.2	-1	reviewed	p.M93V	1.000	78	0%	103	39.8%	1	100%	benign(0.006)	tolerated(0.92)	-	HMMPfam_Nup133_N
DISC1	27185	genome.wustl.edu	37	1	232162285	232162285	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018662.2	+1	reviewed	p.D804	1.000	67	0%	41	51.2%	2	50%	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233388205	233388205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014801.3	-1	provisional	p.T675A	0.996	106	0%	99	15.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
HEATR1	55127	genome.wustl.edu	37	1	236735757	236735757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.R1221G	0.994	213	0%	204	37.7%	2	0%	benign(0.023)	tolerated(0.33)	neutral(0.025)	superfamily_ARM-type_fold
MTR	4548	genome.wustl.edu	37	1	237013715	237013715	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.F529	1.000	110	0%	96	56.2%	3	66.6%	-	-	-	HMMPfam_Pterin_bind,superfamily_Dihydropteroate synthetase-like
MTR	4548	genome.wustl.edu	37	1	237060869	237060869	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.Y1241	1.000	341	0%	630	42.2%	2	50%	-	-	-	superfamily_Methionine synthase activation domain-like
RYR2	6262	genome.wustl.edu	37	1	237693784	237693784	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.K960	0.990	180	0%	165	42.4%	0	-	-	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237886435	237886435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.D3521G	1.000	221	0%	191	45%	0	-	possibly_damaging(0.895)	-	-	NULL
RYR2	6262	genome.wustl.edu	37	1	237947794	237947794	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.L4261P	0.213	45	0%	71	43.7%	0	-	benign(0.267)	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240370260	240370260	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.T716	0.000	34	0%	76	46.1%	0	-	-	-	-	NULL
WDR64	128025	genome.wustl.edu	37	1	241842790	241842790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000366552	+1	known	p.T163A	0.998	56	0%	56	48.2%	0	-	probably_damaging(0.987)	tolerated(0.56)	neutral(0.443)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR64	128025	genome.wustl.edu	37	1	241951197	241951197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144625.4	+1	validated	p.R461*	1.000	182	0.5%	188	42.6%	0	-	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243504345	243504345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006642.2	+1	validated	p.L409S	0.839	204	0%	153	36.6%	7	42.8%	benign(0.027)	tolerated(0.81)	neutral(0.002)	NULL
ADSS	159	genome.wustl.edu	37	1	244586155	244586155	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126.2	-1	reviewed	p.G215	0.794	495	0%	150	38.7%	2	50%	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
AHCTF1	25909	genome.wustl.edu	37	1	247016560	247016560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.T1466A	0.000	91	0%	65	24.6%	2	50%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
OR2T11	127077	genome.wustl.edu	37	1	248790015	248790015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001964.1	-1	provisional	p.L139I	0.004	13	0%	12	58.3%	0	-	benign(0.127)	tolerated(0.16)	neutral(0.070)	HMMPfam_7tm_1,superfamily_SSF81321
TPO	7173	genome.wustl.edu	37	2	1488574	1488574	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446278	+1	known	p.P47L	0.222	9	0.000	26	0.462	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PXDN	7837	genome.wustl.edu	37	2	1643158	1643158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.Y1330C	0.852	63	0%	158	15.8%	9	33.3%	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1947077	1947077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.R61I	1.000	114	0%	212	46.2%	0	-	unknown(0)	deleterious(0.01)	-	superfamily_SSF103637
KIDINS220	57498	genome.wustl.edu	37	2	8910800	8910800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020738.2	-1	validated	p.R1004K	1.000	83	0%	50	38%	1	0%	benign(0.045)	tolerated(0.63)	neutral(0.006)	NULL
ATP6V1C2	245973	genome.wustl.edu	37	2	10918777	10918777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039362.1	+1	reviewed	p.F348S	1.000	24	0%	170	37.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-ATPase_C
PDIA6	10130	genome.wustl.edu	37	2	10942672	10942672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005742.2	-1	validated	p.E38D	1.000	123	0%	164	45.7%	7	57.1%	benign(0.219)	tolerated(0.25)	neutral(0.058)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
LPIN1	23175	genome.wustl.edu	37	2	11905720	11905720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145693.1	+1	reviewed	p.L18R	1.000	29	0%	138	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipin_N
DDX1	1653	genome.wustl.edu	37	2	15769729	15769729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004939.1	+1	reviewed	p.W627R	1.000	50	0%	46	41.3%	116	38.7%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_P-loop containing nucleoside triphosphate hydrolases
C2orf44	80304	genome.wustl.edu	37	2	24260580	24260580	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025203.2	-1	validated	p.S595	0.380	123	0%	83	54.2%	0	-	-	-	-	NULL
ASXL2	55252	genome.wustl.edu	37	2	25967267	25967267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018263.4	-1	validated	p.T647A	1.000	55	0%	112	42.9%	0	-	unknown(0)	tolerated(0.16)	-	NULL
TMEM214	54867	genome.wustl.edu	37	2	27262945	27262945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017727.4	+1	validated	p.V557A	0.019	23	0%	100	38%	35	37.1%	benign(0.019)	tolerated(0.11)	neutral(0.273)	HMMPfam_DUF2359
CGREF1	10669	genome.wustl.edu	37	2	27325438	27325438	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006569.5	-1	validated	p.H34	0.000	11	0%	45	35.6%	0	-	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27448625	27448625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.F558S	1.000	33	0%	114	47.4%	0	-	benign(0.223)	deleterious(0)	neutral(0.467)	HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,superfamily_SSF56059
BRE	9577	genome.wustl.edu	37	2	28268666	28268666	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004899.3	+1	validated	p.K190	1.000	83	0%	101	42.6%	8	0%	-	-	-	HMMPfam_BRE
FOSL2	2355	genome.wustl.edu	37	2	28634913	28634913	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005253.3	+1	reviewed	p.I193	1.000	15	0%	29	55.2%	10	50%	-	-	-	NULL
FOSL2	2355	genome.wustl.edu	37	2	28635086	28635086	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005253.3	+1	reviewed	p.I251S	0.995	6	0.000	19	0.316	13	38.4%	probably_damaging(0.962)	tolerated(0.17)	neutral(0.464)	NULL
CLIP4	79745	genome.wustl.edu	37	2	29355022	29355022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024692.4	+1	validated	p.L93P	1.000	256	0%	128	45.3%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Ankyrin repeat
BIRC6	57448	genome.wustl.edu	37	2	32696115	32696115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.V2172A	1.000	205	0%	234	42.7%	2	0%	possibly_damaging(0.891)	deleterious(0.01)	deleterious(0.756)	NULL
BIRC6	57448	genome.wustl.edu	37	2	32724627	32724627	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.T2828S	1.000	114	0%	126	43.7%	1	100%	benign(0.001)	tolerated(0.75)	neutral(0.002)	NULL
ENSG00000181250	0	genome.wustl.edu	37	2	33952561	33952561	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322472	-1	known	p.S94	0.873	7	0.000	36	0.306	0	-	-	-	-	HMMPfam_MARVEL
SULT6B1	391365	genome.wustl.edu	37	2	37406678	37406678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032377.1	-1	provisional	p.H113R	1.000	107	0%	99	55.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM82A1	151393	genome.wustl.edu	37	2	38202415	38202415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144713.3	+1	validated	p.L408I	0.679	248	0%	366	47.3%	1	0%	benign(0.003)	tolerated(0.43)	neutral(0.013)	NULL
ATL2	64225	genome.wustl.edu	37	2	38570527	38570527	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443098	-1	known	p.R81K	0.969	95	0%	57	40.4%	1	100%	-	-	-	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC3A1	6519	genome.wustl.edu	37	2	44531376	44531376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000341.3	+1	reviewed	p.N411D	0.656	146	0%	78	39.7%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
CAMKMT	79823	genome.wustl.edu	37	2	44970822	44970822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024766.3	+1	validated	p.M229V	1.000	85	0%	49	53.1%	3	33.3%	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NRXN1	9378	genome.wustl.edu	37	2	51254850	51254850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.R188G	0.057	6	0.000	38	0.421	0	-	possibly_damaging(0.816)	tolerated(0.4)	neutral(0.325)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
EFEMP1	2202	genome.wustl.edu	37	2	56145069	56145069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039348.1	-1	reviewed	p.Q83R	0.985	100	0%	209	45%	0	-	benign(0.315)	tolerated(0.14)	neutral(0.348)	NULL
PAPOLG	64895	genome.wustl.edu	37	2	60983615	60983615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022894.2	+1	reviewed	p.M1T	1.000	25	0%	51	39.2%	2	50%	benign(0.005)	deleterious(0)	neutral(0.445)	NULL
KIAA1841	84542	genome.wustl.edu	37	2	61333717	61333717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129993.1	+1	validated	p.C511R	0.045	164	0%	192	39.1%	1	0%	benign(0.141)	tolerated(0.1)	neutral(0.298)	NULL
MDH1	4190	genome.wustl.edu	37	2	63821630	63821630	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005917.2	+1	reviewed	p.P4	0.585	129	0%	128	38.3%	30	46.6%	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
AFTPH	54812	genome.wustl.edu	37	2	64779282	64779282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203437.2	+1	validated	p.P225L	0.961	49	0%	65	46.2%	1	100%	possibly_damaging(0.614)	deleterious(0.04)	deleterious(0.562)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71576705	71576705	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.N207	1.000	122	0%	91	47.3%	1	0%	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73830428	73830428	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.K4119T	1.000	169	0%	125	43.2%	28	60.7%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	NULL
SLC4A5	57835	genome.wustl.edu	37	2	74452120	74452120	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451608	-1	known	e24+1	1.000	97	0%	156	48.1%	0	-	benign(0.095)	deleterious(0)	neutral(0.452)	-
DNAH6	1768	genome.wustl.edu	37	2	84811162	84811162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.M757V	1.000	157	0.6%	140	10.7%	0	-	benign(0.253)	deleterious(0.04)	neutral(0.375)	NULL
RNF181	51255	genome.wustl.edu	37	2	85824228	85824229	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016494.3	+1	validated	p.N111fs	1.000:0.994	-	-	-	-	-	-	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
POLR1A	25885	genome.wustl.edu	37	2	86274358	86274358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015425.3	-1	validated	p.Q888R	0.993	42	0%	92	35.9%	2	50%	benign(0.026)	tolerated(0.34)	neutral(0.024)	HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
LOC344065	344065	genome.wustl.edu	37	2	95880404	95880404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_292895.7	+1	model	p.I224V	0.008	14	0%	16	50%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NCAPH	23397	genome.wustl.edu	37	2	97019069	97019069	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015341.3	+1	reviewed	p.D312E	0.969	64	0%	94	42.6%	0	-	benign(0.005)	tolerated(0.2)	neutral(0.049)	HMMPfam_Barren
LOC653924	653924	genome.wustl.edu	37	2	97747748	97747748	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719255.2	+1	model	p.T71	0.994	8	0.000	18	0.500	0	-	-	-	-	NULL
ACTR1B	10120	genome.wustl.edu	37	2	98276021	98276041	+	Splice_Site	DEL	CCTCACCTGCCCTGACCAGAA	CCTCACCTGCCCTGACCAGAA	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	CCTCACCTGCCCTGACCAGAA	CCTCACCTGCCCTGACCAGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460427	-1	known	NULL	0.001:0.024	-	-	-	-	-	-	-	-	-	-
VWA3B	200403	genome.wustl.edu	37	2	98928361	98928361	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144992.4	+1	provisional	p.R1201*	0.002	12	0%	32	18.8%	2	50%	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99634681	99634681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025244.2	-1	validated	p.L685P	0.876	151	0%	110	45.5%	8	62.5%	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	NULL
TXNDC9	10190	genome.wustl.edu	37	2	99938615	99938615	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005783.3	-1	reviewed	p.K122	0.991	136	0%	129	38.8%	6	33.3%	-	-	-	superfamily_Thiordxn-like_fd
REV1	51455	genome.wustl.edu	37	2	100055064	100055064	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016316.2	-1	reviewed	p.T404	1.000	47	0%	56	48.2%	7	71.4%	-	-	-	superfamily_DNA/RNA polymerases
MAP4K4	9448	genome.wustl.edu	37	2	102452423	102452424	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145686.2	+1	reviewed	p.K253fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP4K4	9448	genome.wustl.edu	37	2	102472450	102472450	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421882	+1	known	p.R155G	1.000	150	0%	191	40.3%	18	72.2%	-	-	-	superfamily_Protein kinase-like (PK-like)
IL18R1	8809	genome.wustl.edu	37	2	103013192	103013192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003855.2	+1	reviewed	p.L491P	0.997	122	0%	112	31.2%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
IL18RAP	8807	genome.wustl.edu	37	2	103040643	103040643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417414	+1	known	p.I148T	0.000	137	0%	90	35.6%	0	-	-	-	-	NULL
NCK2	8440	genome.wustl.edu	37	2	106498188	106498188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004720.2	+1	reviewed	p.E211K	1.000	7	0.000	78	0.526	10	40%	benign(0.268)	tolerated(0.05)	neutral(0.374)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
RGPD3	653489	genome.wustl.edu	37	2	107041488	107041488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144013.1	-1	validated	p.T979A	1.000	158	0.6%	85	41.2%	2	0%	benign(0.005)	tolerated(0.12)	neutral(0.261)	NULL
RGPD4	285190	genome.wustl.edu	37	2	108487588	108487588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182588.2	+1	validated	p.Q1043R	1.000	95	0%	56	42.9%	0	-	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109382906	109382906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.F1971L	1.000	127	0%	77	42.9%	7	42.8%	possibly_damaging(0.888)	-	-	NULL
RANBP2	5903	genome.wustl.edu	37	2	109383782	109383782	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006267.4	+1	reviewed	p.S2263A	1.000	339	0.3%	137	46.7%	9	44.4%	probably_damaging(0.987)	-	-	NULL
SLC35F5	80255	genome.wustl.edu	37	2	114493388	114493388	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447673	-1	known	p.S16G	0.978	124	0%	65	47.7%	2	100%	-	-	-	NULL
PTPN4	5775	genome.wustl.edu	37	2	120720255	120720255	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002830.2	+1	reviewed	p.T782P	1.000	68	2.9%	56	14.3%	9	11.1%	benign(0.279)	tolerated(0.26)	neutral(0.064)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
GLI2	2736	genome.wustl.edu	37	2	121712946	121712946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005270.4	+1	reviewed	p.M195V	0.978	8	0.000	26	0.346	0	-	benign(0)	tolerated(1)	-	NULL
MKI67IP	84365	genome.wustl.edu	37	2	122488592	122488592	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032390.4	-1	reviewed	p.K147	0.743	262	0%	250	44.4%	35	51.4%	-	-	-	NULL
SAP130	79595	genome.wustl.edu	37	2	128783765	128783765	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024545.3	-1	validated	p.P60	0.967	26	0%	143	37.1%	2	50%	-	-	-	NULL
MGAT5	4249	genome.wustl.edu	37	2	135199351	135199351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002410.3	+1	validated	p.M631T	1.000	17	0%	34	47.1%	0	-	possibly_damaging(0.794)	tolerated(0.67)	neutral(0.300)	NULL
KYNU	8942	genome.wustl.edu	37	2	143685266	143685266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003937.2	+1	reviewed	p.I110N	0.998	145	0%	163	39.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
GALNT13	114805	genome.wustl.edu	37	2	155265593	155265593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052917.2	+1	validated	p.Q465R	1.000	219	0%	84	41.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
ACVR1C	130399	genome.wustl.edu	37	2	158390510	158390510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145259.2	-1	validated	p.N468D	1.000	82	0%	59	42.4%	0	-	probably_damaging(0.994)	tolerated(0.31)	deleterious(0.479)	HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ACVR1C	130399	genome.wustl.edu	37	2	158406724	158406724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145259.2	-1	validated	p.V242A	0.998	179	0%	199	39.7%	0	-	possibly_damaging(0.687)	deleterious(0)	deleterious(0.690)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PKP4	8502	genome.wustl.edu	37	2	159481832	159481832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.H349R	1.000	7	0.000	37	0.595	5	40%	probably_damaging(0.957)	tolerated(0.12)	deleterious(0.661)	NULL
TANC1	85461	genome.wustl.edu	37	2	160055563	160055563	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033394.2	+1	validated	p.T1081	1.000	65	0%	128	48.4%	3	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PLA2R1	22925	genome.wustl.edu	37	2	160826696	160826696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.I875V	1.000	196	0%	60	38.3%	0	-	possibly_damaging(0.524)	tolerated(0.45)	neutral(0.189)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160843804	160843804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.C634R	1.000	50	0%	31	41.9%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ITGB6	3694	genome.wustl.edu	37	2	160983020	160983020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000888.3	-1	provisional	p.S585P	0.955	33	0%	29	44.8%	0	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMPfam_EGF_2,superfamily_EGF/Laminin
COBLL1	22837	genome.wustl.edu	37	2	165551729	165551729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014900.3	-1	validated	p.Y763H	1.000	325	0%	224	45.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN1A	6323	genome.wustl.edu	37	2	166848296	166848296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.Q1819R	1.000	98	0%	46	39.1%	0	-	benign(0.117)	deleterious(0.02)	neutral(0.393)	NULL
SCN9A	6335	genome.wustl.edu	37	2	167056090	167056090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.S1676G	1.000	241	0%	269	42%	0	-	benign(0.135)	deleterious(0.02)	neutral(0.395)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN9A	6335	genome.wustl.edu	37	2	167168024	167168024	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002977.3	-1	reviewed	p.Y81*	1.000	40	0%	42	40.5%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168106682	168106682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.F2927S	1.000	53	0%	40	57.5%	0	-	probably_damaging(1)	tolerated(0.31)	deleterious(0.527)	NULL
XIRP2	129446	genome.wustl.edu	37	2	168108293	168108293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152381.4	+1	validated	p.G3464E	0.997	66	0%	36	47.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRP2	4036	genome.wustl.edu	37	2	169993921	169993921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.K4534T	0.007	90	0%	83	43.4%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
LRP2	4036	genome.wustl.edu	37	2	170034342	170034342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.H3455R	0.998	179	0%	143	46.2%	0	-	benign(0.061)	tolerated(0.18)	neutral(0.060)	HMMPfam_Ldl_recept_b,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170493790	170493790	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.S674	0.852	114	0%	67	34.3%	16	43.7%	-	-	-	NULL
C2orf77	129881	genome.wustl.edu	37	2	170531438	170531438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085447.1	-1	validated	p.K136R	1.000	217	0%	138	44.9%	0	-	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	NULL
PHOSPHO2	493911	genome.wustl.edu	37	2	170557502	170557502	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008489.2	+1	provisional	p.F7	1.000	105	0%	95	38.9%	2	50%	-	-	-	HMMPfam_Put_Phosphatase,superfamily_HAD-like
MYO3B	140469	genome.wustl.edu	37	2	171070934	171070934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138995.3	+1	validated	p.R123G	0.998	39	0%	64	50%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZAK	51776	genome.wustl.edu	37	2	174052288	174052288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016653.2	+1	reviewed	p.M118L	1.000	231	0%	77	46.8%	1	0%	possibly_damaging(0.64)	deleterious(0.02)	deleterious(0.607)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
GPR155	151556	genome.wustl.edu	37	2	175346304	175346304	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.P127	0.532	96	0%	147	46.9%	0	-	-	-	-	HMMPfam_Mem_trans
HOXD4	3233	genome.wustl.edu	37	2	177016574	177016574	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014621.2	+1	reviewed	p.S71	0.282	4	0.000	12	0.500	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179414325	179414325	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.L28140R	0.999	70	0%	60	41.7%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179426396	179426396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.P25585S	1.000	80	0%	52	9.6%	0	-	possibly_damaging(0.935)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179437215	179437215	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.V21980A	0.963	75	0%	58	36.2%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179446419	179446419	+	Silent	SNP	G	G	T	rs187378247	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S19624*	0.045	63	0%	41	41.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179463771	179463771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.D16319G	1.000	76	0%	41	43.9%	1	100%	benign(0.04)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179481335	179481335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.E13493D	1.000	128	0%	57	42.1%	1	0%	benign(0.29)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179604346	179604346	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342175	-1	known	p.F4367	0.000	113	0%	58	39.7%	0	-	-	-	-	NULL
CCDC141	285025	genome.wustl.edu	37	2	179701836	179701836	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173648.2	-1	provisional	p.S795	0.000	43	0%	31	41.9%	0	-	-	-	-	NULL
NCKAP1	10787	genome.wustl.edu	37	2	183791546	183791546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205842.1	-1	validated	p.M1096V	1.000	230	0%	91	38.5%	8	25%	benign(0.123)	tolerated(0.12)	neutral(0.271)	HMMPfam_Nckap1
NCKAP1	10787	genome.wustl.edu	37	2	183793628	183793628	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205842.1	-1	validated	e29-1	1.000	97	0%	49	38.8%	0	-	-	-	-	-
COL5A2	1290	genome.wustl.edu	37	2	189932994	189932994	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.G420	0.166	51	0%	52	28.8%	0	-	-	-	-	HMMPfam_Collagen
WDR75	84128	genome.wustl.edu	37	2	190329926	190329926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032168.1	+1	provisional	p.E412G	0.851	155	0%	89	37.1%	13	53.8%	benign(0.005)	tolerated(0.37)	neutral(0.019)	superfamily_WD40_like
MYO1B	4430	genome.wustl.edu	37	2	192248004	192248004	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	e14-2	1.000	251	0%	139	45.3%	0	-	-	-	-	-
SDPR	8436	genome.wustl.edu	37	2	192711304	192711304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004657.5	-1	reviewed	p.E116D	1.000	11	0%	75	37.3%	1	0%	possibly_damaging(0.717)	tolerated(0.08)	deleterious(0.559)	NULL
DNAH7	56171	genome.wustl.edu	37	2	196682518	196682518	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.G3109	0.482	151	0%	138	42.8%	1	0%	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196765186	196765186	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.P1456	0.769	46	0%	56	39.3%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GTF3C3	9330	genome.wustl.edu	37	2	197664288	197664288	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012086.2	-1	provisional	p.I16	0.985	86	0%	166	50.6%	0	-	-	-	-	NULL
PGAP1	80055	genome.wustl.edu	37	2	197755585	197755585	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024989.3	-1	validated	p.I380	1.000	134	0%	95	36.8%	0	-	-	-	-	NULL
RFTN2	130132	genome.wustl.edu	37	2	198436963	198436963	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144629.2	-1	validated	p.K425	0.963	176	0%	165	43%	1	0%	-	-	-	NULL
SGOL2	151246	genome.wustl.edu	37	2	201436260	201436260	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152524.5	+1	validated	p.T397	0.995	42	0%	25	36%	0	-	-	-	-	NULL
ENSG00000207116	0	genome.wustl.edu	37	2	201694782	201694782	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384388	+1	novel	NULL	0.005	122	0%	108	52.8%	0	-	-	-	-	-
NIF3L1	60491	genome.wustl.edu	37	2	201759985	201759985	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136039.2	+1	validated	e3-2	0.981	112	0%	100	43%	7	100%	-	-	-	-
CASP8	841	genome.wustl.edu	37	2	202141572	202141572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.M287T	1.000	73	0%	152	42.1%	3	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMSmart_SM00115,superfamily_Caspase-like
ALS2CR11	151254	genome.wustl.edu	37	2	202359442	202359442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439140	-1	known	p.R541M	0.962	43	0%	33	42.4%	0	-	probably_damaging(0.999)	-	-	NULL
BMPR2	659	genome.wustl.edu	37	2	203420831	203420831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001204.6	+1	reviewed	p.S815G	0.358	46	0%	65	38.5%	5	40%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
DYTN	391475	genome.wustl.edu	37	2	207569664	207569664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093730.1	-1	provisional	p.L129P	1.000	127	0%	64	39.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_efhand_2,superfamily_SSF47473
CREB1	1385	genome.wustl.edu	37	2	208440111	208440111	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134442.3	+1	reviewed	p.I221M	1.000	38	0%	60	43.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RPE	6120	genome.wustl.edu	37	2	210880817	210880817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199229.1	+1	provisional	p.I108T	1.000	114	0%	119	51.3%	5	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ribul_P_3_epim,superfamily_Ribulose-phoshate binding barrel
BARD1	580	genome.wustl.edu	37	2	215645705	215645705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000465.2	-1	reviewed	p.V298A	0.000	93	0%	53	24.5%	0	-	benign(0.004)	tolerated(0.72)	neutral(0.002)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215838758	215838758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.L1826S	0.993	388	0%	206	44.2%	0	-	possibly_damaging(0.514)	tolerated(0.54)	neutral(0.180)	NULL
MARCH4	57574	genome.wustl.edu	37	2	217142543	217142543	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020814.2	-1	validated	p.A239	0.996	18	0%	20	35%	0	-	-	-	-	NULL
CXCR2	3579	genome.wustl.edu	37	2	219000311	219000311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001557.3	+1	reviewed	p.C263R	1.000	32	0%	53	39.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PRKAG3	53632	genome.wustl.edu	37	2	219692562	219692562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017431.2	-1	reviewed	p.W272R	1.000	104	0%	198	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CBS
FEV	54738	genome.wustl.edu	37	2	219846787	219846787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017521.2	-1	reviewed	p.Y107H	1.000	9	0.000	67	0.433	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785
CCDC108	255101	genome.wustl.edu	37	2	219892704	219892704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.Y627H	0.449	13	0%	21	38.1%	1	0%	possibly_damaging(0.466)	tolerated(0.54)	neutral(0.161)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219903673	219903673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194302.2	-1	provisional	p.L33P	0.003	163	0%	178	45.5%	0	-	possibly_damaging(0.881)	-	-	NULL
INHA	3623	genome.wustl.edu	37	2	220439929	220439929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002191.2	+1	reviewed	p.N261I	0.952	16	0%	92	40.2%	4	0%	benign(0.372)	tolerated(0.06)	neutral(0.441)	HMMPfam_TGF_beta,superfamily_Cystine-knot cytokines
EPHA4	2043	genome.wustl.edu	37	2	222298975	222298975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004438.3	-1	reviewed	p.A795T	1.000	58	0%	81	42%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
WDFY1	57590	genome.wustl.edu	37	2	224777004	224777004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020830.3	-1	reviewed	p.R82Q	1.000	61	0%	86	50%	1	0%	possibly_damaging(0.936)	tolerated(0.43)	neutral(0.395)	HMMSmart_SM00320,superfamily_WD40 repeat-like
DOCK10	55619	genome.wustl.edu	37	2	225729366	225729366	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014689.2	-1	validated	p.H502	0.991	91	0%	122	44.3%	0	-	-	-	-	NULL
COL4A4	1286	genome.wustl.edu	37	2	227872073	227872073	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.S1681R	1.000	66	0%	197	36.5%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
COL4A4	1286	genome.wustl.edu	37	2	227979372	227979372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000092.4	-1	reviewed	p.F177S	1.000	272	0%	105	36.2%	0	-	possibly_damaging(0.847)	tolerated(0.41)	neutral(0.340)	NULL
COL4A3	1285	genome.wustl.edu	37	2	228173703	228173703	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000091.3	+1	reviewed	p.N1517K	0.992	68	0%	71	38%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
PID1	55022	genome.wustl.edu	37	2	230020653	230020653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017933.4	-1	validated	p.L51M	0.711	32	0%	40	45%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SPATA3	130560	genome.wustl.edu	37	2	231861022	231861022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139073.3	+1	validated	p.N25S	0.001	82	0%	255	43.5%	0	-	possibly_damaging(0.763)	tolerated(0.63)	neutral(0.286)	NULL
HTR2B	3357	genome.wustl.edu	37	2	231974010	231974010	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000867.4	-1	validated	p.L223	0.925	117	0%	55	41.8%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
EFHD1	80303	genome.wustl.edu	37	2	233498649	233498649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025202.3	+1	validated	p.N79D	1.000	4	0.000	13	0.462	0	-	possibly_damaging(0.484)	deleterious(0.03)	deleterious(0.525)	NULL
NGEF	25791	genome.wustl.edu	37	2	233748693	233748693	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424488	-1	known	p.Q125P	0.000	36	0%	99	52.5%	2	50%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ATG16L1	55054	genome.wustl.edu	37	2	234171859	234171859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030803.6	+1	validated	p.E98A	1.000	82	0%	80	40%	3	33.3%	possibly_damaging(0.829)	tolerated(0.16)	neutral(0.374)	superfamily_WD40 repeat-like,HMMPfam_ATG16
DGKD	8527	genome.wustl.edu	37	2	234357970	234357970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.R612S	0.988	15	0%	75	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
COL6A3	1293	genome.wustl.edu	37	2	238247749	238247749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.F2826L	1.000	95	0%	76	48.7%	7	0%	possibly_damaging(0.88)	-	-	NULL
LRRFIP1	9208	genome.wustl.edu	37	2	238688168	238688168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137550.1	+1	validated	p.Q639R	1.000	26	0%	47	42.6%	21	57.1%	probably_damaging(0.963)	tolerated(0.15)	deleterious(0.647)	NULL
ESPNL	339768	genome.wustl.edu	37	2	239039396	239039396	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194312.2	+1	validated	p.R681	0.000	4	0.000	20	0.400	0	-	-	-	-	NULL
PASK	23178	genome.wustl.edu	37	2	242063386	242063386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015148.2	-1	validated	p.L961P	0.000	13	0%	54	44.4%	7	28.5%	benign(0.005)	tolerated(0.36)	neutral(0.020)	NULL
HDLBP	3069	genome.wustl.edu	37	2	242181891	242181891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005336.3	-1	validated	p.H718R	0.973	18	0%	54	53.7%	58	44.8%	benign(0.005)	deleterious(0.05)	neutral(0.345)	HMMSmart_KH,superfamily_SSF54791
ATG4B	23192	genome.wustl.edu	37	2	242593007	242593007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013325.4	+1	reviewed	p.C89R	1.000	8	0.000	44	0.318	32	56.2%	benign(0.004)	tolerated(0.58)	neutral(0.005)	HMMPfam_Peptidase_C54
CHL1	10752	genome.wustl.edu	37	3	361544	361544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.S29P	0.779	128	0%	67	46.3%	1	100%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
CPNE9	151835	genome.wustl.edu	37	3	9771200	9771200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153635.2	+1	validated	p.F496V	1.000	21	0%	124	45.2%	1	0%	possibly_damaging(0.86)	deleterious(0.02)	deleterious(0.716)	superfamily_SSF53300
TADA3	10474	genome.wustl.edu	37	3	9825750	9825750	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006354.2	-1	reviewed	p.L356	0.991	9	0.000	31	0.290	236	49.1%	-	-	-	HMMPfam_Ada3
TMEM111	55831	genome.wustl.edu	37	3	10016098	10016098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018447.1	-1	provisional	p.I128V	1.000	116	0%	108	37%	51	49%	benign(0.006)	tolerated(0.31)	neutral(0.027)	HMMPfam_DUF850
SEC13	6396	genome.wustl.edu	37	3	10345786	10345786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183352.1	-1	reviewed	p.K260R	1.000	26	0%	33	45.5%	194	42.7%	benign(0.102)	tolerated(0.28)	neutral(0.040)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
FGD5	152273	genome.wustl.edu	37	3	14862754	14862754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.R726G	0.048	16	0%	44	29.5%	0	-	probably_damaging(0.961)	deleterious(0)	deleterious(0.849)	NULL
FGD5	152273	genome.wustl.edu	37	3	14939507	14939507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152536.3	+1	validated	p.A991T	0.005	17	0%	25	68%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
ZFYVE20	64145	genome.wustl.edu	37	3	15131961	15131961	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022340.2	-1	validated	p.Y78	0.998	145	0%	233	46.8%	0	-	-	-	-	NULL
ANKRD28	23243	genome.wustl.edu	37	3	15727531	15727531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015199.2	-1	provisional	p.G686E	1.000	137	0%	158	42.4%	1	0%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KCNH8	131096	genome.wustl.edu	37	3	19295166	19295166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144633.2	+1	reviewed	p.N33D	1.000	127	0%	73	50.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF55785
SGOL1	151648	genome.wustl.edu	37	3	20212685	20212685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012410.2	-1	provisional	p.L441P	0.996	68	0%	81	53.1%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
LRRC3B	116135	genome.wustl.edu	37	3	26751690	26751690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052953.2	+1	provisional	p.V176E	1.000	38	0%	23	21.7%	0	-	benign(0.003)	tolerated(1)	-	superfamily_SSF52058
ZCWPW2	152098	genome.wustl.edu	37	3	28476663	28476663	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428875	+1	known	p.W115*	1.000	119	0%	78	44.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
TGFBR2	7048	genome.wustl.edu	37	3	30713624	30713624	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024847.2	+1	reviewed	p.L342	0.544	30	0%	59	45.8%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PDCD6IP	10015	genome.wustl.edu	37	3	33895379	33895379	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013374.4	+1	validated	p.H633	0.999	67	0%	44	40.9%	2	0%	-	-	-	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37368077	37368077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002078.4	+1	reviewed	p.Q1567R	0.940	46	0%	31	35.5%	4	50%	benign(0.091)	deleterious(0.05)	neutral(0.352)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38153707	38153707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.M1174T	0.927	23	0%	44	40.9%	10	60%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38161956	38161956	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.S1574	0.702	29	0%	67	35.8%	24	16.6%	-	-	-	NULL
XYLB	9942	genome.wustl.edu	37	3	38438622	38438622	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005108.3	+1	reviewed	p.C470	0.986	113	0%	247	44.1%	1	100%	-	-	-	HMMPfam_FGGY_C,superfamily_SSF53067
WDR48	57599	genome.wustl.edu	37	3	39129639	39129639	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020839.2	+1	provisional	p.R499*	0.999	57	0%	76	42.1%	2	0%	-	-	-	NULL
GORASP1	64689	genome.wustl.edu	37	3	39144201	39144201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031899.2	-1	reviewed	p.R106C	0.928	44	0%	133	45.9%	10	20%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
XIRP1	165904	genome.wustl.edu	37	3	39226116	39226116	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.T1607	0.000	37	0%	170	44.1%	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266125	41266125	+	Missense_Mutation	SNP	C	C	T	rs121913413	byCluster	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.T41I	1.000	33	0%	32	56.2%	23	34.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANO10	55129	genome.wustl.edu	37	3	43640117	43640117	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018075.3	-1	validated	p.I127L	1.000	303	0%	166	42.8%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
ABHD5	51099	genome.wustl.edu	37	3	43743874	43743874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016006.4	+1	reviewed	p.N101D	0.000	152	0%	164	44.5%	2	0%	benign(0)	tolerated(0.87)	neutral(0.001)	superfamily_SSF53474
ABHD5	51099	genome.wustl.edu	37	3	43759311	43759311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016006.4	+1	reviewed	p.I308V	1.000	83	0%	64	43.8%	8	50%	benign(0.005)	tolerated(0.38)	neutral(0.018)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
C3orf77	375337	genome.wustl.edu	37	3	44283874	44283874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.L110S	0.001	15	0%	39	56.4%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44286630	44286630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145030.1	+1	validated	p.N878D	0.305	68	0%	111	39.6%	0	-	benign(0.039)	tolerated(0.12)	neutral(0.263)	NULL
CCR5	1234	genome.wustl.edu	37	3	46414381	46414381	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000579.3	+1	reviewed	e1-2	0.728	28	0%	37	45.9%	0	-	-	-	-	-
FBXW12	285231	genome.wustl.edu	37	3	48423486	48423486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207102.2	+1	validated	p.H402Q	0.000	66	0%	89	43.8%	0	-	probably_damaging(0.999)	tolerated(0.39)	deleterious(0.506)	superfamily_WD40_like
PLXNB1	5364	genome.wustl.edu	37	3	48460728	48460728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448774	-1	known	p.F725C	0.986	5	0.000	22	0.318	28	57.1%	unknown(0)	-	-	NULL
IMPDH2	3615	genome.wustl.edu	37	3	49063774	49063774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000884.2	-1	reviewed	p.I330T	1.000	53	0%	175	41.1%	46	43.4%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_SSF51412
LAMB2	3913	genome.wustl.edu	37	3	49159217	49159217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.L1667P	0.954	31	0%	137	36.5%	328	44.8%	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	NULL
CDHR4	389118	genome.wustl.edu	37	3	49836820	49836820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007540.2	-1	provisional	p.G34S	0.855	52	0%	214	48.6%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
MON1A	84315	genome.wustl.edu	37	3	49947800	49947800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032355.3	-1	validated	p.F474L	1.000	17	0%	107	43.9%	17	47%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_Mon1
VPRBP	9730	genome.wustl.edu	37	3	51458366	51458366	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	p.I633	1.000	72	0%	76	48.7%	2	50%	-	-	-	superfamily_ARM repeat
ALAS1	211	genome.wustl.edu	37	3	52238026	52238026	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000688.4	+1	validated	p.K192T	1.000	78	0%	90	48.9%	5	40%	possibly_damaging(0.73)	tolerated(0.4)	neutral(0.283)	NULL
WDR82	80335	genome.wustl.edu	37	3	52294471	52294471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025222.3	-1	validated	p.E158G	1.000	64	0%	128	33.6%	13	69.2%	benign(0.022)	tolerated(0.16)	neutral(0.060)	HMMSmart_SM00320,superfamily_WD40 repeat-like
PBRM1	55193	genome.wustl.edu	37	3	52637555	52637555	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018165.4	-1	validated	p.R889*	0.960	301	0%	128	38.3%	0	-	-	-	-	NULL
FAM208A	23272	genome.wustl.edu	37	3	56657354	56657354	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015224.3	-1	validated	p.D1138V	0.005	187	0%	91	49.5%	19	31.5%	benign(0.052)	tolerated(0.1)	neutral(0.289)	NULL
HESX1	8820	genome.wustl.edu	37	3	57232257	57232257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003865.2	-1	reviewed	p.K176E	0.995	271	0.4%	178	55.1%	2	50%	benign(0.253)	deleterious(0.01)	neutral(0.432)	NULL
FLNB	2317	genome.wustl.edu	37	3	58080675	58080675	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001457.3	+1	reviewed	p.K300	1.000	84	0%	54	40.7%	1	100%	-	-	-	HMMSmart_IG_FLMN,superfamily_Ig_E-set,HMMPfam_Filamin
PTPRG	5793	genome.wustl.edu	37	3	62142877	62142877	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.P273	0.006	72	0%	55	45.5%	1	100%	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ADAMTS9	56999	genome.wustl.edu	37	3	64524944	64524944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182920.1	-1	reviewed	p.S1850G	0.345	35	0%	63	39.7%	4	25%	benign(0.072)	tolerated(0.38)	neutral(0.023)	HMMPfam_GON
LRIG1	26018	genome.wustl.edu	37	3	66431203	66431203	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015541.2	-1	validated	p.P951	0.007	13	0%	27	33.3%	98	32.6%	-	-	-	NULL
SUCLG2	8801	genome.wustl.edu	37	3	67578573	67578573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003848.3	-1	reviewed	p.G134S	1.000	326	0%	137	38%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-grasp_2,superfamily_SSF56059
RYBP	23429	genome.wustl.edu	37	3	72428499	72428499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012234.4	-1	validated	p.K70E	1.000	431	0%	200	25%	5	20%	unknown(0)	tolerated(0.15)	-	NULL
RYBP	23429	genome.wustl.edu	37	3	72428501	72428501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012234.4	-1	validated	p.E69G	1.000	430	0%	192	41.7%	5	40%	unknown(0)	tolerated(0.12)	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77614115	77614115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002942.3	+1	reviewed	p.S565G	1.000	30	0%	47	46.8%	1	100%	benign(0.006)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GBE1	2632	genome.wustl.edu	37	3	81548282	81548282	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000158.3	-1	reviewed	p.M677T	0.872	112	0%	96	34.4%	6	33.3%	-	-	-	NULL
GBE1	2632	genome.wustl.edu	37	3	81584449	81584449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264326	-1	known	p.N611D	0.993	179	0%	73	54.8%	4	0%	benign(0)	tolerated(1)	-	HMMPfam_Alpha-amylase_C,superfamily_Glycosyl hydrolase domain
FILIP1L	11259	genome.wustl.edu	37	3	99567753	99567753	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.T923S	0.971	133	0%	148	41.2%	5	0%	probably_damaging(0.991)	tolerated(0.33)	neutral(0.468)	NULL
FILIP1L	11259	genome.wustl.edu	37	3	99569678	99569678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182909.2	-1	validated	p.V281A	1.000	153	0%	165	35.8%	2	0%	benign(0)	tolerated(1)	-	HMMPfam_CortBP2
TBC1D23	55773	genome.wustl.edu	37	3	100016877	100016877	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018309.2	+1	validated	p.N329	1.000	72	1.4%	81	38.3%	2	0%	-	-	-	superfamily_Rhodanese/Cell cycle control phosphatase
TBC1D23	55773	genome.wustl.edu	37	3	100037936	100037936	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018309.2	+1	validated	p.S556T	1.000	117	0%	68	38.2%	2	0%	probably_damaging(0.991)	tolerated(0.54)	neutral(0.452)	NULL
IMPG2	50939	genome.wustl.edu	37	3	100963522	100963522	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016247.2	-1	validated	p.S551	0.922	104	0%	61	39.3%	0	-	-	-	-	NULL
IMPG2	50939	genome.wustl.edu	37	3	101023017	101023017	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016247.2	-1	validated	p.S158	0.998	151	0%	114	50%	0	-	-	-	-	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101390757	101390757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000461821	-1	known	p.V204A	0.000	57	0%	99	40.4%	0	-	unknown(0)	-	-	NULL
HHLA2	11148	genome.wustl.edu	37	3	108076817	108076817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007072.2	+1	provisional	p.L271P	0.859	168	0%	64	28.1%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
MYH15	22989	genome.wustl.edu	37	3	108189565	108189565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.T475A	1.000	58	0%	64	48.4%	0	-	benign(0.056)	tolerated(1)	neutral(0.004)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1524	57650	genome.wustl.edu	37	3	108279571	108279571	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.L584	0.988	311	0%	135	40.7%	1	0%	-	-	-	NULL
KIAA1524	57650	genome.wustl.edu	37	3	108288299	108288299	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020890.2	-1	validated	p.Q350	0.993	55	0%	22	31.8%	1	100%	-	-	-	superfamily_ARM repeat
DZIP3	9666	genome.wustl.edu	37	3	108353782	108353782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014648.3	+1	validated	p.K294R	0.999	326	0%	80	46.3%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	NULL
PHLDB2	90102	genome.wustl.edu	37	3	111685472	111685472	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134438.1	+1	validated	p.S1030	0.991	35	0%	69	44.9%	2	0%	-	-	-	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111927219	111927219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183061.1	-1	validated	p.Y598D	0.001	137	0%	31	41.9%	0	-	possibly_damaging(0.512)	tolerated(0.12)	neutral(0.432)	superfamily_Voltage-gated potassium channels
WDR52	55779	genome.wustl.edu	37	3	113122749	113122749	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018338.3	-1	validated	p.M374L	0.612	131	0%	144	41%	7	85.7%	benign(0)	tolerated(1)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
KIAA2018	205717	genome.wustl.edu	37	3	113383237	113383237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.D60G	1.000	338	0%	100	34%	0	-	benign(0.039)	deleterious(0.05)	neutral(0.347)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
KIAA1407	57577	genome.wustl.edu	37	3	113720512	113720512	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020817.1	-1	predicted	p.Q698P	1.000	419	0%	177	38.4%	10	70%	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	NULL
POGLUT1	56983	genome.wustl.edu	37	3	119211199	119211199	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152305.2	+1	validated	p.E365*	1.000	178	0%	136	39%	3	0%	-	-	-	HMMSmart_SM00672,HMMPfam_DUF821
STXBP5L	9515	genome.wustl.edu	37	3	121100198	121100198	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014980.2	+1	validated	p.K826	1.000	91	0%	64	45.3%	0	-	-	-	-	NULL
EAF2	55840	genome.wustl.edu	37	3	121573665	121573665	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018456.4	+1	validated	p.K111	1.000	34	0%	29	58.6%	16	43.7%	-	-	-	HMMPfam_EAF
SLC15A2	6565	genome.wustl.edu	37	3	121642109	121642110	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021082.3	+1	validated	p.L334fs	0.999:0.995	-	-	-	-	-	-	-	-	-	HMMPfam_PTR2,superfamily_MFS_gen_substrate_transporter
ILDR1	286676	genome.wustl.edu	37	3	121720678	121720678	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175924.2	-1	provisional	p.W138*	1.000	65	0%	143	43.4%	2	50%	-	-	-	HMMSmart_IG,superfamily_SSF48726
PARP9	83666	genome.wustl.edu	37	3	122274418	122274418	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031458.2	-1	validated	p.A235	0.994	91	0%	128	42.2%	4	75%	-	-	-	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
HSPBAP1	79663	genome.wustl.edu	37	3	122459289	122459289	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024610.4	-1	provisional	p.Q457P	0.000	126	0%	220	46.4%	41	56%	possibly_damaging(0.531)	deleterious(0.02)	deleterious(0.562)	NULL
RPN1	6184	genome.wustl.edu	37	3	128344420	128344420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002950.3	-1	reviewed	p.F451S	1.000	69	0%	91	50.5%	323	46.7%	possibly_damaging(0.819)	deleterious(0.03)	deleterious(0.674)	HMMPfam_Ribophorin_I
PLXND1	23129	genome.wustl.edu	37	3	129291780	129291780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015103.2	-1	validated	p.V948M	1.000	4	0.000	47	0.404	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
COL6A5	256076	genome.wustl.edu	37	3	130107955	130107955	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.I798	0.018	105	0%	73	42.5%	0	-	-	-	-	HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130114088	130114088	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.S1116	0.204	88	0%	57	31.6%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
COL6A5	256076	genome.wustl.edu	37	3	130116666	130116666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153264.5	+1	validated	p.S1270G	0.168	109	0%	88	43.2%	0	-	benign(0.058)	-	-	superfamily_SSF53300
PIK3R4	30849	genome.wustl.edu	37	3	130463893	130463893	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014602.2	-1	validated	p.I57S	1.000	76	0%	96	35.4%	0	-	benign(0.229)	tolerated(0.1)	neutral(0.309)	HMMPfam_Pkinase_Tyr,superfamily_Kinase_like
DNAJC13	23317	genome.wustl.edu	37	3	132211364	132211364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.Y1244H	1.000	123	0%	83	42.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_ARM repeat
AMOTL2	51421	genome.wustl.edu	37	3	134078146	134078146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016201.2	-1	reviewed	p.A695T	0.334	17	0%	59	50.8%	2	50%	possibly_damaging(0.692)	tolerated(0.29)	neutral(0.277)	NULL
MSL2	55167	genome.wustl.edu	37	3	135870183	135870184	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018133.3	-1	validated	p.A513fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
STAG1	10274	genome.wustl.edu	37	3	136141831	136141831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005862.2	-1	reviewed	p.E569G	1.000	355	0%	182	40.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
DBR1	51163	genome.wustl.edu	37	3	137881151	137881151	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016216.2	-1	validated	p.N405	0.020	159	0%	153	41.8%	4	50%	-	-	-	NULL
FAIM	55179	genome.wustl.edu	37	3	138341081	138341081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033030.1	+1	validated	p.Y89H	0.356	119	0%	74	41.9%	9	66.6%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_FAIM1
RASA2	5922	genome.wustl.edu	37	3	141328724	141328724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006506.2	+1	reviewed	p.C779R	1.000	165	0%	72	37.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GK5	256356	genome.wustl.edu	37	3	141906610	141906610	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039547.2	-1	validated	p.A185	0.102	185	0%	125	43.2%	0	-	-	-	-	HMMPfam_FGGY_N,superfamily_Actin-like ATPase domain
AGTR1	185	genome.wustl.edu	37	3	148459374	148459374	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000685.4	+1	reviewed	p.Y184	0.025	117	0%	101	40.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
HPS3	84343	genome.wustl.edu	37	3	148880571	148880571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032383.3	+1	reviewed	p.Q796R	1.000	119	0%	91	46.2%	52	51.9%	possibly_damaging(0.517)	tolerated(0.06)	deleterious(0.496)	NULL
CP	1356	genome.wustl.edu	37	3	148897439	148897439	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000096.3	-1	reviewed	p.L855	0.000	137	0%	76	40.8%	32	53.1%	-	-	-	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3
RNF13	11342	genome.wustl.edu	37	3	149678722	149678722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007282.4	+1	reviewed	p.L326S	0.908	70	0%	94	52.1%	4	25%	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	NULL
AADACL2	344752	genome.wustl.edu	37	3	151475372	151475372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207365.3	+1	validated	p.K399T	0.203	136	0%	57	43.9%	0	-	benign(0.11)	deleterious(0.04)	neutral(0.357)	superfamily_alpha/beta-Hydrolases
MBNL1	4154	genome.wustl.edu	37	3	152165443	152165443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207293.1	+1	validated	p.K299R	1.000	104	0%	97	36.1%	6	33.3%	probably_damaging(0.955)	deleterious(0.02)	deleterious(0.782)	NULL
SLC33A1	9197	genome.wustl.edu	37	3	155571118	155571118	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004733.2	-1	reviewed	p.A223	0.029	31	0%	86	50%	1	0%	-	-	-	superfamily_MFS general substrate transporter
SMC4	10051	genome.wustl.edu	37	3	160141268	160141268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.R692H	1.000	159	0.6%	89	42.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160141369	160141369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.R726G	0.998	268	0%	139	46.8%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMC4	10051	genome.wustl.edu	37	3	160150823	160150823	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002800.1	+1	validated	p.P1180	0.976	110	0%	104	48.1%	3	100%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRC31	79782	genome.wustl.edu	37	3	169574573	169574573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024727.2	-1	validated	p.Q192R	0.162	177	0%	88	37.5%	0	-	possibly_damaging(0.701)	tolerated(0.13)	deleterious(0.504)	superfamily_RNI-like
PHC3	80012	genome.wustl.edu	37	3	169820416	169820416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.R895H	1.000	50	0%	20	55%	5	60%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
PHC3	80012	genome.wustl.edu	37	3	169846843	169846843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.S473P	1.000	57	0%	85	34.1%	1	0%	benign(0.009)	tolerated(0.14)	neutral(0.250)	NULL
TNIK	23043	genome.wustl.edu	37	3	170885009	170885009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015028.2	-1	validated	p.S275I	1.000	206	0%	136	42.6%	0	-	benign(0.088)	tolerated(0.18)	neutral(0.062)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NLGN1	22871	genome.wustl.edu	37	3	173998822	173998822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014932.2	+1	reviewed	p.Q734R	1.000	90	0%	63	36.5%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.Q546P	1.000	107	0%	71	33.8%	0	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
ZNF639	51193	genome.wustl.edu	37	3	179051976	179051976	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016331.1	+1	provisional	p.C408	1.000	112	0%	113	33.6%	14	21.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PEX5L	51555	genome.wustl.edu	37	3	179593217	179593217	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.D185V	1.000	217	0%	294	41.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
MCCC1	56922	genome.wustl.edu	37	3	182770009	182770009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020166.3	-1	reviewed	p.V298A	1.000	86	0%	124	40.3%	1	100%	benign(0.045)	deleterious(0.03)	neutral(0.367)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
B3GNT5	84002	genome.wustl.edu	37	3	182988032	182988032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032047.4	+1	reviewed	p.E149G	1.000	49	0%	45	44.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Galactosyl_T
YEATS2	55689	genome.wustl.edu	37	3	183476686	183476686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018023.4	+1	validated	p.V530A	0.922	144	0%	113	38.1%	0	-	benign(0)	tolerated(1)	-	NULL
PARL	55486	genome.wustl.edu	37	3	183551561	183551561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018622.5	-1	reviewed	p.G294V	1.000	38	0%	76	36.8%	82	43.9%	possibly_damaging(0.833)	deleterious(0.02)	deleterious(0.701)	HMMPfam_Rhomboid
DVL3	1857	genome.wustl.edu	37	3	183888118	183888118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.S576G	1.000	8	0.000	24	0.500	62	41.9%	unknown(0)	deleterious(0.03)	-	NULL
PSMD2	5708	genome.wustl.edu	37	3	184024578	184024578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002808.3	+1	reviewed	p.E664K	1.000	140	0%	303	38.6%	59	30.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ARM-type_fold
TRA2B	6434	genome.wustl.edu	37	3	185639898	185639898	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004593.2	-1	validated	p.N180S	1.000	125	0%	128	46.1%	26	65.3%	benign(0.018)	tolerated(0.92)	neutral(0.001)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TBCCD1	55171	genome.wustl.edu	37	3	186269013	186269013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134415.1	-1	validated	p.I534L	0.997	129	0%	148	43.9%	12	58.3%	benign(0.001)	tolerated(0.8)	neutral(0.001)	NULL
DNAJB11	51726	genome.wustl.edu	37	3	186289893	186289893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016306.4	+1	validated	p.F26L	1.000	71	0%	159	44%	9	44.4%	benign(0.146)	tolerated(0.11)	neutral(0.284)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
EIF4A2	1974	genome.wustl.edu	37	3	186505341	186505341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001967.3	+1	validated	p.S323P	1.000	112	0%	208	46.6%	132	47.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
BCL6	604	genome.wustl.edu	37	3	187447093	187447093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.P367L	1.000	30	0%	138	13%	28	7.1%	benign(0.002)	deleterious(0.02)	neutral(0.383)	NULL
BCL6	604	genome.wustl.edu	37	3	187447287	187447287	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.E302D	1.000	38	0%	130	37.7%	37	40.5%	benign(0.049)	tolerated(0.24)	neutral(0.041)	NULL
BCL6	604	genome.wustl.edu	37	3	187447566	187447566	+	Silent	SNP	G	G	T	rs33922911	byCluster;byFrequency;by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130845.1	-1	reviewed	p.S209	0.099	22	0%	92	46.7%	17	70.5%	-	-	-	NULL
TP63	8626	genome.wustl.edu	37	3	189526205	189526205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003722.4	+1	reviewed	p.D157Y	1.000	51	0%	159	43.4%	0	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
LEPREL1	55214	genome.wustl.edu	37	3	189704624	189704624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018192.3	-1	validated	p.L381M	0.997	72	0%	68	32.4%	0	-	possibly_damaging(0.644)	deleterious(0.05)	deleterious(0.571)	NULL
IL1RAP	3556	genome.wustl.edu	37	3	190374360	190374360	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000317757	+1	known	p.T676	0.974	20	0%	55	41.8%	0	-	-	-	-	NULL
MB21D2	151963	genome.wustl.edu	37	3	192516950	192516950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178496.3	-1	validated	p.D234G	1.000	91	0%	145	51%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ATP13A5	344905	genome.wustl.edu	37	3	192997193	192997193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198505.2	-1	provisional	p.L1093M	0.864	87	0%	68	38.2%	0	-	benign(0.012)	tolerated(0.38)	neutral(0.018)	superfamily_SSF81665
ATP13A4	84239	genome.wustl.edu	37	3	193185121	193185121	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428352	-1	known	p.P6L	0.022	25	0%	30	43.3%	0	-	-	-	-	HMMPfam_E1-E2_ATPase
OPA1	4976	genome.wustl.edu	37	3	193372701	193372701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130837.2	+1	reviewed	p.I688T	1.000	117	0%	56	35.7%	6	33.3%	possibly_damaging(0.879)	deleterious(0.01)	deleterious(0.748)	NULL
MUC4	4585	genome.wustl.edu	37	3	195513605	195513605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.P1616S	0.016	141	2.8%	286	11.9%	1	0%	possibly_damaging(0.948)	-	-	NULL
LMLN	89782	genome.wustl.edu	37	3	197762718	197762718	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136049.2	+1	reviewed	p.P594	0.979	73	0%	131	32.1%	1	0%	-	-	-	"HMMPfam_Peptidase_M8,superfamily_Metalloproteases (""zincins"") catalytic domain"
GAK	2580	genome.wustl.edu	37	4	887767	887767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005255.2	-1	validated	p.F258I	1.000	8	0.000	51	0.471	11	54.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_Kinase_like,HMMPfam_Pkinase
SLC26A1	10861	genome.wustl.edu	37	4	984935	984935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022042.2	-1	reviewed	p.L186P	0.479	6	0.000	22	0.409	5	80%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SLBP	7884	genome.wustl.edu	37	4	1698020	1698020	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006527.2	-1	reviewed	p.R180*	0.997	131	0%	167	44.3%	9	0%	-	-	-	NULL
WHSC1	7468	genome.wustl.edu	37	4	1957436	1957436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042424.2	+1	reviewed	p.C845*	1.000	5	0.000	27	0.407	9	44.4%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
HAUS3	79441	genome.wustl.edu	37	4	2233702	2233702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024511.5	-1	provisional	p.E588D	0.997	136	0%	79	39.2%	3	33.3%	probably_damaging(0.989)	tolerated(0.61)	neutral(0.444)	NULL
MFSD10	10227	genome.wustl.edu	37	4	2934906	2934906	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507272	-1	known	e3-2	1.000	14	0%	65	47.7%	30	36.6%	-	-	-	-
NOP14	8602	genome.wustl.edu	37	4	2940929	2940929	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003703.1	-1	validated	p.S820	0.000	144	0%	307	42%	10	30%	-	-	-	HMMPfam_Nop14
DOK7	285489	genome.wustl.edu	37	4	3491473	3491473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173660.4	+1	reviewed	p.L241P	1.000	4	0.000	22	0.409	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TMEM128	85013	genome.wustl.edu	37	4	4239580	4239580	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032927.2	-1	provisional	p.I137F	0.998	97	0%	128	26.6%	13	38.4%	benign(0.139)	deleterious(0.01)	neutral(0.418)	NULL
CYTL1	54360	genome.wustl.edu	37	4	5016953	5016953	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509419	-1	known	p.Y68C	0.690	86	0%	138	43.5%	0	-	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6826412	6826412	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	e1+1	1.000	50	0%	72	43.1%	2	100%	-	-	-	-
GRPEL1	80273	genome.wustl.edu	37	4	7064164	7064164	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025196.2	-1	provisional	p.T85	0.517	90	0%	210	42.4%	34	44.1%	-	-	-	HMMPfam_GrpE
SORCS2	57537	genome.wustl.edu	37	4	7533325	7533325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020777.2	+1	reviewed	p.N206S	1.000	19	0%	77	49.4%	0	-	benign(0.004)	tolerated(0.66)	neutral(0.003)	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
HTRA3	94031	genome.wustl.edu	37	4	8305971	8305971	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053044.2	+1	provisional	p.Y387*	0.454	20	0%	85	32.9%	1	0%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
LOC100287077	100287077	genome.wustl.edu	37	4	8620979	8620979	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342426.1	-1	model	p.Q152	0.000	8	0.000	42	0.548	0	-	-	-	-	NULL
ENSG00000219492	0	genome.wustl.edu	37	4	9388999	9388999	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508324	-1	known	p.K5	0.846	265	0%	156	34.6%	0	-	-	-	-	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10445928	10445928	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.S675	0.978	95	0%	67	29.9%	1	0%	-	-	-	NULL
RAB28	9364	genome.wustl.edu	37	4	13476025	13476025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017979.2	-1	reviewed	p.L60V	0.942	176	0%	100	49%	5	60%	benign(0)	tolerated(1)	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
BOD1L	259282	genome.wustl.edu	37	4	13597536	13597536	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.G2684	0.000	141	0%	115	46.1%	1	100%	-	-	-	NULL
BOD1L	259282	genome.wustl.edu	37	4	13606000	13606000	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.S842T	1.000	369	0%	284	44.7%	0	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	superfamily_SSF81995
CC2D2A	57545	genome.wustl.edu	37	4	15517530	15517530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.R307K	0.994	28	0%	51	43.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM200B	285550	genome.wustl.edu	37	4	15689465	15689465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145191.1	+1	validated	p.K289E	1.000	63	0%	55	43.6%	1	100%	benign(0.176)	tolerated(0.55)	neutral(0.023)	NULL
TAPT1	202018	genome.wustl.edu	37	4	16215511	16215511	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153365.2	-1	reviewed	p.L70	0.995	325	0%	178	48.9%	0	-	-	-	-	NULL
MED28	80306	genome.wustl.edu	37	4	17623294	17623294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025205.3	+1	provisional	p.V104A	1.000	86	0%	81	34.6%	23	39.1%	benign(0.104)	tolerated(0.63)	neutral(0.011)	NULL
LCORL	254251	genome.wustl.edu	37	4	17885652	17885652	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382226	-1	known	p.S500	1.000	112	0%	71	26.8%	1	0%	-	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20550700	20550700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.L813P	0.989	256	0%	122	45.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PPARGC1A	10891	genome.wustl.edu	37	4	23814463	23814463	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013261.3	-1	reviewed	p.H642	0.999	90	0%	97	41.2%	0	-	-	-	-	superfamily_RNA-binding domain RBD
ZCCHC4	29063	genome.wustl.edu	37	4	25363488	25363488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024936.2	+1	validated	p.Y340C	1.000	68	0%	48	47.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBPJ	3516	genome.wustl.edu	37	4	26432143	26432143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005349.2	+1	validated	p.R396G	1.000	62	0%	70	40%	63	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIG,superfamily_E set domains
DTHD1	401124	genome.wustl.edu	37	4	36292120	36292120	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136536.3	+1	validated	p.D48V	1.000	202	0%	102	40.2%	0	-	benign(0.059)	deleterious(0.02)	neutral(0.387)	NULL
N4BP2	55728	genome.wustl.edu	37	4	40104192	40104192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018177.3	+1	reviewed	p.S243P	0.260	85	0%	52	51.9%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
RBM47	54502	genome.wustl.edu	37	4	40440109	40440109	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098634.1	-1	validated	p.Q268*	1.000	6	0.000	51	0.392	3	0%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ATP8A1	10396	genome.wustl.edu	37	4	42557994	42557994	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006095.2	-1	reviewed	p.Q468	0.999	199	0%	168	51.2%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
GABRA4	2557	genome.wustl.edu	37	4	46979580	46979580	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000809.2	-1	reviewed	p.I114N	1.000	201	0%	110	37.3%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
NFXL1	152518	genome.wustl.edu	37	4	47886396	47886396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152995.4	-1	validated	p.L628S	0.718	41	0%	58	41.4%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00438
FIP1L1	81608	genome.wustl.edu	37	4	54324841	54324841	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030917.3	+1	reviewed	p.Y507	1.000	83	0%	37	40.5%	60	36.6%	-	-	-	NULL
CEP135	9662	genome.wustl.edu	37	4	56819412	56819412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025009.3	+1	validated	p.L92P	0.996	129	0%	108	47.2%	0	-	possibly_damaging(0.501)	deleterious(0)	deleterious(0.612)	NULL
LPHN3	23284	genome.wustl.edu	37	4	62936114	62936114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.D1300Y	0.998	64	0%	69	42%	0	-	possibly_damaging(0.453)	deleterious(0)	deleterious(0.593)	HMMPfam_Latrophilin
EPHA5	2044	genome.wustl.edu	37	4	66230764	66230764	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.I736N	1.000	208	0%	96	42.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CENPC1	1060	genome.wustl.edu	37	4	68359665	68359665	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001812.2	-1	reviewed	p.T743S	0.987	138	0%	114	43%	9	33.3%	benign(0.067)	tolerated(0.48)	neutral(0.015)	NULL
YTHDC1	91746	genome.wustl.edu	37	4	69184568	69184568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031732.2	-1	validated	p.D566V	1.000	109	0%	83	38.6%	20	45%	unknown(0)	deleterious(0)	-	NULL
UGT2A1	10941	genome.wustl.edu	37	4	70465019	70465019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006798.2	-1	validated	p.P270H	1.000	96	0%	48	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
PROL1	58503	genome.wustl.edu	37	4	71275323	71275323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021225.4	+1	reviewed	p.I93S	0.001	211	0%	321	43%	0	-	possibly_damaging(0.767)	-	-	NULL
AMBN	258	genome.wustl.edu	37	4	71472270	71472270	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016519.4	+1	reviewed	p.P389	0.982	23	0%	27	37%	0	-	-	-	-	HMMPfam_Amelin,HMMSmart_SM00817
ANKRD17	26057	genome.wustl.edu	37	4	73963901	73963901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.N1637S	1.000	195	0%	178	43.8%	6	33.3%	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74019637	74019637	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.N398	1.000	64	0%	92	52.2%	2	100%	-	-	-	HMMPfam_Ank,superfamily_Ankyrin repeat
ALB	213	genome.wustl.edu	37	4	74280785	74280785	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000477.5	+1	reviewed	p.D364E	0.000	206	0%	120	42.5%	0	-	benign(0)	tolerated(1)	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
THAP6	152815	genome.wustl.edu	37	4	76442188	76442188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144721.4	+1	validated	p.Q96R	1.000	116	0%	182	54.9%	0	-	benign(0.026)	tolerated(0.18)	neutral(0.057)	NULL
G3BP2	9908	genome.wustl.edu	37	4	76584079	76584079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012297.4	-1	validated	p.H42R	1.000	114	0%	164	43.9%	6	33.3%	unknown(0)	-	-	HMMPfam_NTF2,superfamily_NTF2-like
SHROOM3	57619	genome.wustl.edu	37	4	77661799	77661799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.F825L	0.000	11	0%	40	42.5%	1	0%	benign(0)	tolerated(1)	-	NULL
CNOT6L	246175	genome.wustl.edu	37	4	78695785	78695785	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000515506	-1	known	p.S100P	1.000	77	0%	97	46.4%	1	0%	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SEC31A	22872	genome.wustl.edu	37	4	83774724	83774724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077207.1	-1	reviewed	p.Q718R	1.000	92	0%	76	43.4%	23	39.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HERC6	55008	genome.wustl.edu	37	4	89334369	89334369	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017912.3	+1	validated	p.P503	0.991	123	0%	94	36.2%	3	100%	-	-	-	NULL
ATOH1	474	genome.wustl.edu	37	4	94750106	94750106	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005172.1	+1	reviewed	p.W10L	1.000	9	0.000	29	0.586	0	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
C4orf17	84103	genome.wustl.edu	37	4	100451032	100451032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032149.2	+1	validated	p.C155R	0.000	108	0%	88	48.9%	0	-	benign(0.31)	tolerated(0.24)	neutral(0.134)	NULL
CENPE	1062	genome.wustl.edu	37	4	104053963	104053963	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001813.2	-1	validated	p.F2271I	0.984	297	0%	158	38.6%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
TET2	54790	genome.wustl.edu	37	4	106157137	106157137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.R680G	0.001	66	0%	78	56.4%	0	-	probably_damaging(0.968)	deleterious(0.04)	deleterious(0.759)	NULL
GSTCD	79807	genome.wustl.edu	37	4	106640293	106640293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031720.2	+1	validated	p.Q168R	0.000	42	0%	38	50%	0	-	benign(0.001)	tolerated(0.48)	neutral(0.011)	superfamily_Glutathione S-transferase (GST) C-terminal domain
RPL34	6164	genome.wustl.edu	37	4	109546291	109546291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000995.3	+1	reviewed	p.R93C	1.000	156	0%	55	34.5%	8029	45.4%	benign(0.011)	deleterious(0)	neutral(0.445)	HMMPfam_Ribosomal_L34e
LOC389217	389217	genome.wustl.edu	37	4	110474797	110474797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001717714.1	-1	model	p.L165I	1.000	11	0%	17	47.1%	0	-	-	-	-	HMMPfam_NAP
LRIT3	345193	genome.wustl.edu	37	4	110773023	110773023	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198506.2	+1	validated	p.L115	0.959	26	0%	36	47.2%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
C4orf21	55345	genome.wustl.edu	37	4	113479375	113479375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505019	-1	known	p.G1684V	0.000	78	0%	164	51.2%	5	40%	benign(0.344)	tolerated(0.05)	neutral(0.454)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ANK2	287	genome.wustl.edu	37	4	114290684	114290684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001148.4	+1	reviewed	p.G3778E	1.000	14	0.000	8	0.625	0	-	probably_damaging(1)	-	-	NULL
SEC24D	9871	genome.wustl.edu	37	4	119661885	119661885	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.D724V	1.000	54	0%	59	37.3%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sec23_BS,superfamily_beta-sandwich domain of Sec23/24
PDE5A	8654	genome.wustl.edu	37	4	120422387	120422477	+	Frame_Shift_Del	DEL	TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA	TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA	TCTTCTCCCTGTTCATTAGATCCTGAAAATACAAATACAGACCAGACACACAGATGTGCATTTATTTATTTAGTTAGTTATTACTTTATTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083.3	-1	reviewed	p.D803fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
KIAA1109	84162	genome.wustl.edu	37	4	123167408	123167408	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446180	+1	known	p.I286T	0.967	87	1.1%	34	52.9%	0	-	-	-	-	NULL
KIAA1109	84162	genome.wustl.edu	37	4	123176053	123176053	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446180	+1	known	p.L629P	0.017	93	0%	74	33.8%	0	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126240054	126240054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.I830V	1.000	48	0%	154	46.1%	0	-	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126411551	126411551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.L4525P	1.000	37	0%	47	34%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCDH10	57575	genome.wustl.edu	37	4	134072029	134072029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.D245G	1.000	15	0%	62	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
SMARCA5	8467	genome.wustl.edu	37	4	144469261	144469261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003601.2	+1	reviewed	p.F985L	1.000	116	0%	79	53.2%	48	47.9%	possibly_damaging(0.733)	tolerated(0.1)	deleterious(0.554)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_SLIDE
FREM3	166752	genome.wustl.edu	37	4	144620167	144620167	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329798	-1	known	p.L554	0.001	20	0%	82	48.8%	0	-	-	-	-	NULL
OTUD4	54726	genome.wustl.edu	37	4	146071745	146071745	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102653.1	-1	reviewed	p.S328	0.003	183	0.5%	195	42.6%	0	-	-	-	-	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152571386	152571386	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109977.1	+1	predicted	p.P731	0.000	69	0%	67	47.8%	2	50%	-	-	-	NULL
LRAT	9227	genome.wustl.edu	37	4	155670149	155670149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004744.3	+1	reviewed	p.V185A	1.000	305	0%	354	41.8%	0	-	benign(0.073)	tolerated(0.29)	neutral(0.034)	NULL
NPY2R	4887	genome.wustl.edu	37	4	156135096	156135096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000910.2	+1	provisional	p.G2D	1.000	93	0%	172	47.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MAP9	79884	genome.wustl.edu	37	4	156274072	156274072	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039580.1	-1	validated	p.V560	0.999	333	0%	115	35.7%	1	0%	-	-	-	NULL
ETFDH	2110	genome.wustl.edu	37	4	159618812	159618812	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004453.2	+1	reviewed	p.H311Q	0.954	179	0%	147	40.1%	5	60%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_FAD/NAD(P)-binding domain
FNIP2	57600	genome.wustl.edu	37	4	159790523	159790523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020840.1	+1	validated	p.L912P	0.000	9	0.000	8	0.625	0	-	probably_damaging(0.957)	tolerated(0.33)	neutral(0.425)	NULL
NPY1R	4886	genome.wustl.edu	37	4	164247674	164247674	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000909.4	-1	validated	p.N11	0.077	241	0%	190	43.2%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
NPY5R	4889	genome.wustl.edu	37	4	164271441	164271441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006174.2	+1	provisional	p.D6N	0.256	103	0%	135	37.8%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	superfamily_SSF81321
TRIM60	166655	genome.wustl.edu	37	4	165961440	165961440	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152620.2	+1	reviewed	p.R72	0.000	98	0%	172	44.2%	0	-	-	-	-	superfamily_SSF57850
KLHL2	11275	genome.wustl.edu	37	4	166215609	166215609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007246.3	+1	validated	p.S215A	1.000	233	0%	93	41.9%	5	0%	benign(0.317)	deleterious(0.01)	deleterious(0.505)	HMMPfam_BACK
DDX60	55601	genome.wustl.edu	37	4	169194492	169194492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017631.5	-1	validated	p.S838G	0.001	69	0%	87	33.3%	0	-	benign(0)	tolerated(0.5)	neutral(0.010)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GALNT7	51809	genome.wustl.edu	37	4	174235157	174235157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017423.2	+1	reviewed	p.F480V	1.000	96	0%	78	34.6%	4	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Nucleotide-diphospho-sugar transferases
FBXO8	26269	genome.wustl.edu	37	4	175160160	175160160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012180.2	-1	reviewed	p.L253I	1.000	100	0%	81	45.7%	12	75%	benign(0.129)	tolerated(0.05)	neutral(0.356)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
CDKN2AIP	55602	genome.wustl.edu	37	4	184367365	184367365	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017632.2	+1	provisional	p.S176	0.001	41	0%	137	43.8%	2	50%	-	-	-	NULL
TLR3	7098	genome.wustl.edu	37	4	187005015	187005015	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003265.2	+1	reviewed	p.F725	0.978	113	0%	98	37.8%	1	0%	-	-	-	NULL
KLKB1	3818	genome.wustl.edu	37	4	187172790	187172790	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000892.3	+1	reviewed	p.C340G	0.998	253	0%	236	39%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_APPLE,PatternScan_APPLE,HMMPfam_PAN_1
FAT1	2195	genome.wustl.edu	37	4	187540503	187540503	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.K2413Q	0.956	47	0%	39	33.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187542225	187542225	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.E1839*	1.000	60	0%	53	35.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC127	133957	genome.wustl.edu	37	5	216866	216866	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145265.2	-1	provisional	p.P33	0.752	87	0%	207	34.3%	3	66.6%	-	-	-	NULL
EXOC3	11336	genome.wustl.edu	37	5	447830	447830	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007277.4	+1	reviewed	p.L109	0.989	8	0.000	43	0.744	4	75%	-	-	-	NULL
SLC6A3	6531	genome.wustl.edu	37	5	1416241	1416241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044.4	-1	reviewed	p.Y335H	1.000	38	0%	163	44.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_SNF
C5orf38	153571	genome.wustl.edu	37	5	2755148	2755148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178569.2	+1	provisional	p.R137I	0.005	109	0%	174	49.4%	1	0%	unknown(0)	-	-	NULL
PAPD7	11044	genome.wustl.edu	37	5	6753066	6753066	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006999.4	+1	reviewed	p.S450	0.000	56	0%	205	47.3%	4	50%	-	-	-	NULL
CTNND2	1501	genome.wustl.edu	37	5	10973663	10973663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.T1194A	1.000	35	0%	60	51.7%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
ZNF622	90441	genome.wustl.edu	37	5	16465344	16465344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033414.2	-1	provisional	p.P144L	1.000	45	0%	107	52.3%	4	50%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
MYO10	4651	genome.wustl.edu	37	5	16703175	16703175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012334.2	-1	validated	p.K790R	0.006	129	0%	173	28.3%	9	11.1%	benign(0.037)	tolerated(0.57)	neutral(0.008)	HMMPfam_IQ,HMMSmart_IQ,superfamily_SSF52540
CDH9	1007	genome.wustl.edu	37	5	26903828	26903828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016279.3	-1	reviewed	p.S306N	1.000	135	0%	126	42.9%	0	-	benign(0.408)	tolerated(0.27)	neutral(0.166)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ADAMTS12	81792	genome.wustl.edu	37	5	33577049	33577049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.R1028G	0.000	81	0%	102	36.3%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
RXFP3	51289	genome.wustl.edu	37	5	33938067	33938067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016568.3	+1	validated	p.A408T	0.946	5	0.000	25	0.360	0	-	benign(0.002)	tolerated(0.41)	neutral(0.015)	superfamily_SSF81321
SPEF2	79925	genome.wustl.edu	37	5	35654804	35654804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.Q318H	0.997	61	0%	43	46.5%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPEF2	79925	genome.wustl.edu	37	5	35806967	35806967	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.T1723	0.001	124	0%	58	50%	13	53.8%	-	-	-	HMMPfam_hATC
LMBRD2	92255	genome.wustl.edu	37	5	36122513	36122513	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007527.1	-1	validated	p.L330R	1.000	115	0%	55	52.7%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LMBR1
NIPBL	25836	genome.wustl.edu	37	5	36985595	36985595	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.P771	0.733	49	0%	82	43.9%	0	-	-	-	-	superfamily_ARM repeat
NIPBL	25836	genome.wustl.edu	37	5	37049388	37049388	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.L2313	1.000	80	0%	76	44.7%	2	100%	-	-	-	superfamily_ARM repeat
C5orf42	65250	genome.wustl.edu	37	5	37183342	37183342	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023073.3	-1	predicted	p.L528	0.004	206	0%	143	50.3%	0	-	-	-	-	NULL
WDR70	55100	genome.wustl.edu	37	5	37722992	37722992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018034.2	+1	provisional	p.K518T	1.000	97	0%	59	35.6%	47	42.5%	possibly_damaging(0.83)	deleterious(0.01)	deleterious(0.721)	NULL
OSMR	9180	genome.wustl.edu	37	5	38925391	38925391	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003999.2	+1	reviewed	p.Y710	0.261	60	0%	47	34%	16	75%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
DAB2	1601	genome.wustl.edu	37	5	39376971	39376971	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.L640	1.000	45	0%	57	63.2%	7	28.5%	-	-	-	NULL
FBXO4	26272	genome.wustl.edu	37	5	41941323	41941323	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012176.2	+1	reviewed	p.T368	0.652	216	0%	149	36.9%	22	31.8%	-	-	-	NULL
CCDC152	100129792	genome.wustl.edu	37	5	42762544	42762544	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134848.1	+1	validated	e2-1	1.000	145	0%	91	36.3%	0	-	-	-	-	-
GPBP1	65056	genome.wustl.edu	37	5	56527023	56527023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127235.2	+1	validated	p.R96C	1.000	105	0%	131	48.9%	19	52.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KIF2A	3796	genome.wustl.edu	37	5	61643936	61643936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098511.1	+1	validated	p.P74L	1.000	105	0%	104	48.1%	9	44.4%	probably_damaging(0.989)	tolerated(0.33)	neutral(0.464)	NULL
RGS7BP	401190	genome.wustl.edu	37	5	63803660	63803660	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029875.1	+1	provisional	p.C96	1.000	20	0%	118	44.9%	1	0%	-	-	-	NULL
CENPK	64105	genome.wustl.edu	37	5	64848335	64848335	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022145.3	-1	validated	p.T51	0.730	142	0%	81	34.6%	0	-	-	-	-	NULL
ERBB2IP	55914	genome.wustl.edu	37	5	65320241	65320241	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018695.2	+1	reviewed	p.L260	1.000	118	0%	63	36.5%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
ERBB2IP	55914	genome.wustl.edu	37	5	65371029	65371029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018695.2	+1	reviewed	p.R1271G	1.000	43	0%	84	44%	12	8.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_PDZ
PIK3R1	5295	genome.wustl.edu	37	5	67584577	67584577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181524.1	+1	reviewed	p.Q5R	1.000	120	0%	237	51.5%	1	100%	benign(0.119)	tolerated(0.11)	neutral(0.281)	NULL
MARVELD2	153562	genome.wustl.edu	37	5	68728461	68728461	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038603.2	+1	validated	p.P430	0.000	35	0%	55	47.3%	2	50%	-	-	-	NULL
NSA2	10412	genome.wustl.edu	37	5	74069744	74069744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014886.3	+1	provisional	p.F192L	1.000	106	0%	63	55.6%	312	41.3%	benign(0.199)	deleterious(0.04)	neutral(0.368)	HMMPfam_Ribosomal_S8e
POC5	134359	genome.wustl.edu	37	5	74990653	74990653	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099271.1	-1	validated	p.N173H	1.000	132	0%	95	36.8%	6	16.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
SV2C	22987	genome.wustl.edu	37	5	75427697	75427697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.Y41C	1.000	98	0%	79	49.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS_gen_substrate_transporter
IQGAP2	10788	genome.wustl.edu	37	5	75884742	75884742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006633.2	+1	validated	p.F157S	1.000	125	0%	83	33.7%	0	-	benign(0.019)	deleterious(0)	neutral(0.446)	HMMPfam_CH,superfamily_Calponin-homology domain CH-domain
AGGF1	55109	genome.wustl.edu	37	5	76342248	76342248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018046.3	+1	validated	p.M316T	1.000	104	0%	167	38.9%	3	0%	benign(0.002)	tolerated(0.63)	neutral(0.004)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79029280	79029280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.E1564D	0.001	72	0%	39	35.9%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
ZCCHC9	84240	genome.wustl.edu	37	5	80604784	80604784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131035.1	+1	validated	p.K185N	1.000	199	0%	161	42.2%	14	21.4%	benign(0.394)	deleterious(0.01)	deleterious(0.532)	HMMPfam_zf-CCHC,HMMSmart_SM00343,superfamily_Retrovirus zinc finger-like domains
VCAN	1462	genome.wustl.edu	37	5	82815466	82815466	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.L447	0.216	72	0%	61	60.7%	0	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82817216	82817216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.T1031P	0.003	48	0%	31	35.5%	0	-	benign(0.013)	tolerated(0.1)	neutral(0.287)	NULL
VCAN	1462	genome.wustl.edu	37	5	82834420	82834420	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.V1866	0.000	37	0%	45	40%	0	-	-	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86674321	86674323	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.L819in_frame_del	1.000:0.992:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RasGAP,HMMSmart_SM00323,superfamily_GTPase activation domain GAP
CCNH	902	genome.wustl.edu	37	5	86703989	86703989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001239.2	-1	reviewed	p.F110S	1.000	82	0%	70	45.7%	12	50%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
GPR98	84059	genome.wustl.edu	37	5	89913724	89913724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.D104G	0.998	107	0%	95	41.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89941819	89941819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.L978P	0.439	159	0%	97	40.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	89979951	89979951	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.S2071	0.017	93	0%	60	35%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90004707	90004707	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509621	+1	known	p.L501P	0.973	173	0%	171	41.5%	0	-	-	-	-	NULL
GPR98	84059	genome.wustl.edu	37	5	90050869	90050869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.L3816S	1.000	118	0%	97	44.3%	0	-	probably_damaging(0.992)	tolerated(0.25)	deleterious(0.484)	NULL
GPR98	84059	genome.wustl.edu	37	5	90149927	90149927	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.D5835Y	0.456	145	0%	217	50.2%	0	-	benign(0.163)	tolerated(0.07)	neutral(0.334)	NULL
TTC37	9652	genome.wustl.edu	37	5	94852889	94852889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.Q751R	0.909	212	0%	67	40.3%	3	66.6%	benign(0.174)	tolerated(0.4)	neutral(0.032)	superfamily_Prenyl_trans
TTC37	9652	genome.wustl.edu	37	5	94864790	94864790	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.P303	0.964	56	0%	78	42.3%	2	0%	-	-	-	HMMSmart_TPR,superfamily_SSF48452
ERAP1	51752	genome.wustl.edu	37	5	96139605	96139605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016442.3	-1	validated	p.S9A	0.023	41	0%	94	46.8%	1	0%	benign(0.002)	tolerated(0.89)	-	NULL
RIOK2	55781	genome.wustl.edu	37	5	96503536	96503536	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018343.2	-1	validated	p.K344	0.001	74	0%	42	54.8%	8	37.5%	-	-	-	NULL
CHD1	1105	genome.wustl.edu	37	5	98192207	98192207	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.A1670	1.000	103	0%	93	46.2%	10	40%	-	-	-	NULL
SLCO4C1	353189	genome.wustl.edu	37	5	101597657	101597657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_180991.4	-1	validated	p.S327Y	1.000	159	0.6%	101	40.6%	0	-	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO6A1	133482	genome.wustl.edu	37	5	101735323	101735323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173488.3	-1	validated	p.F584L	0.021	166	0%	69	50.7%	0	-	possibly_damaging(0.765)	tolerated(0.19)	neutral(0.333)	HMMPfam_OATP,superfamily_MFS general substrate transporter
PPIP5K2	23262	genome.wustl.edu	37	5	102522058	102522058	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015216.2	+1	provisional	p.L1069	1.000	44	0%	52	44.2%	0	-	-	-	-	NULL
NREP	9315	genome.wustl.edu	37	5	111311066	111311066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142475.1	-1	validated	p.E14*	0.000	99	0%	177	45.2%	0	-	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112173624	112173624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.N778S	1.000	47	0%	43	48.8%	0	-	possibly_damaging(0.533)	tolerated(0.07)	deleterious(0.499)	NULL
TMED7	51014	genome.wustl.edu	37	5	114952081	114952081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181836.5	-1	validated	p.H167R	1.000	74	0%	84	42.9%	3	66.6%	probably_damaging(0.982)	tolerated(0.12)	deleterious(0.687)	HMMPfam_EMP24_GP25L
CDO1	1036	genome.wustl.edu	37	5	115142133	115142133	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001801.2	-1	validated	p.D162	0.000	176	0%	161	44.1%	0	-	-	-	-	HMMPfam_CDO_I
ZNF608	57507	genome.wustl.edu	37	5	123983535	123983535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020747.2	-1	validated	p.D848Y	1.000	38	0%	135	43%	2	100%	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
LMNB1	4001	genome.wustl.edu	37	5	126161746	126161746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005573.2	+1	reviewed	p.S520P	1.000	49	0%	59	52.5%	10	50%	benign(0.387)	deleterious(0)	deleterious(0.569)	HMMPfam_IF_tail,superfamily_Lamin A/C globular tail domain
CTXN3	613212	genome.wustl.edu	37	5	126993302	126993302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048252.2	+1	validated	p.T30K	0.997	80	0%	40	32.5%	0	-	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	NULL
FBN2	2201	genome.wustl.edu	37	5	127714517	127714517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.Y557C	1.000	51	0%	28	50%	0	-	possibly_damaging(0.903)	tolerated(0.18)	neutral(0.414)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
RAPGEF6	51735	genome.wustl.edu	37	5	130771776	130771776	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308008	-1	known	p.K1348	1.000	339	0%	311	45.7%	0	-	-	-	-	NULL
FNIP1	96459	genome.wustl.edu	37	5	131006245	131006245	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133372.2	-1	validated	p.S1007T	0.996	47	0%	60	50%	0	-	benign(0.001)	tolerated(0.85)	neutral(0.001)	NULL
RAD50	10111	genome.wustl.edu	37	5	131939633	131939633	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005732.3	+1	reviewed	p.R807	1.000	80	0%	45	48.9%	2	50%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF3A	11127	genome.wustl.edu	37	5	132039168	132039168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007054.5	-1	validated	p.L458I	1.000	321	0%	216	42.6%	0	-	probably_damaging(0.986)	tolerated(0.16)	deleterious(0.494)	NULL
SAR1B	51128	genome.wustl.edu	37	5	133948404	133948404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033503.2	-1	reviewed	p.F74C	1.000	29	0%	48	41.7%	29	31%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SAR,HMMPfam_Arf,superfamily_SSF52540
DDX46	9879	genome.wustl.edu	37	5	134113268	134113268	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014829.2	+1	reviewed	p.D206	1.000	210	0%	155	41.9%	20	45%	-	-	-	NULL
H2AFY	9555	genome.wustl.edu	37	5	134705209	134705209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.G122R	1.000	77	0%	123	39.8%	51	37.2%	probably_damaging(0.996)	tolerated(0.16)	deleterious(0.521)	superfamily_Histone-fold
KDM3B	51780	genome.wustl.edu	37	5	137726894	137726894	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016604.3	+1	validated	p.L525	1.000	171	0%	119	49.6%	2	0%	-	-	-	NULL
CTNNA1	1495	genome.wustl.edu	37	5	138261077	138261077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001903.2	+1	validated	p.K627R	1.000	25	0%	57	42.1%	64	39%	benign(0)	tolerated(1)	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139889375	139889375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.F1307V	1.000	75	0%	59	35.6%	14	57.1%	possibly_damaging(0.67)	tolerated(0.62)	neutral(0.241)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
SRA1	10011	genome.wustl.edu	37	5	139931572	139931572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035235.2	-1	reviewed	p.T129A	0.582	23	0%	87	39.1%	114	45.6%	benign(0.021)	tolerated(0.19)	neutral(0.051)	HMMPfam_SRA1
SLC35A4	113829	genome.wustl.edu	37	5	139947202	139947202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080670.2	+1	provisional	p.M150L	0.970	17	0%	46	28.3%	13	38.4%	benign(0.011)	tolerated(0.75)	neutral(0.002)	HMMPfam_Nuc_sug_transp,superfamily_SSF103481
PCDHA9	9752	genome.wustl.edu	37	5	140229335	140229335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.S419P	0.000	23	0%	109	48.6%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140263889	140263889	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.S679L	0.000	4	0.000	32	0.469	0	-	benign(0.004)	tolerated(0.26)	neutral(0.034)	NULL
PCDHB7	56129	genome.wustl.edu	37	5	140554680	140554680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018940.2	+1	reviewed	p.G755V	0.218	29	0%	202	44.1%	0	-	possibly_damaging(0.937)	deleterious(0.01)	deleterious(0.788)	NULL
PCDHB8	56128	genome.wustl.edu	37	5	140558805	140558805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.S397Y	0.044	54	0%	156	39.1%	0	-	possibly_damaging(0.472)	deleterious(0)	deleterious(0.601)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559237	140559237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019120.2	+1	reviewed	p.A541D	0.941	19	0%	105	42.9%	0	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA5	56110	genome.wustl.edu	37	5	140744010	140744010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.E38G	1.000	20	0%	90	46.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB3	56102	genome.wustl.edu	37	5	140752382	140752382	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032097.1	+1	reviewed	p.S807	0.962	92	0%	180	38.9%	0	-	-	-	-	NULL
PCDHGB5	56101	genome.wustl.edu	37	5	140779998	140779998	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.Q768	0.000	206	0%	566	41%	0	-	-	-	-	NULL
PCDHGC5	56097	genome.wustl.edu	37	5	140869908	140869908	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018929.2	+1	reviewed	p.T367	0.393	65	0%	275	39.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141034936	141034936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.M1381T	1.000	23	0%	62	58.1%	51	45%	probably_damaging(0.959)	deleterious(0.01)	deleterious(0.808)	NULL
ARAP3	64411	genome.wustl.edu	37	5	141038026	141038026	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.A1144	0.698	51	0%	189	43.9%	47	55.3%	-	-	-	HMMPfam_RA
NDFIP1	80762	genome.wustl.edu	37	5	141511805	141511805	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030571.3	+1	reviewed	p.G60	0.998	83	0%	98	49%	29	51.7%	-	-	-	HMMPfam_DUF2370
LARS	51520	genome.wustl.edu	37	5	145493761	145493761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020117.9	-1	reviewed	p.F1147L	1.000	51	0%	48	43.8%	138	44.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCYOX1L	78991	genome.wustl.edu	37	5	148743721	148743721	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024028.3	+1	validated	p.S140R	1.000	67	0%	298	40.9%	3	33.3%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	HMMPfam_Prenylcys_lyase,superfamily_FAD/NAD(P)-binding domain
ARHGEF37	389337	genome.wustl.edu	37	5	149011705	149011705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001669.2	+1	validated	p.L660S	1.000	48	0%	94	44.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
FAT2	2196	genome.wustl.edu	37	5	150946578	150946578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.K639E	0.514	154	0%	99	46.5%	0	-	possibly_damaging(0.442)	deleterious(0.03)	deleterious(0.509)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
LARP1	23367	genome.wustl.edu	37	5	154169883	154169883	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	e2-2	1.000	31	0%	86	36%	0	-	-	-	-	-
LARP1	23367	genome.wustl.edu	37	5	154183836	154183836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015315.3	+1	validated	p.R762C	0.999	31	0%	80	42.5%	12	58.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HAVCR2	84868	genome.wustl.edu	37	5	156533846	156533846	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032782.3	-1	validated	p.E62	0.000	44	0%	50	38%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
FAM71B	153745	genome.wustl.edu	37	5	156590216	156590216	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130899.2	-1	validated	p.E354*	0.000	25	0%	30	53.3%	0	-	-	-	-	NULL
C1QTNF2	114898	genome.wustl.edu	37	5	159776297	159776297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031908.4	-1	validated	p.E291K	1.000	29	0%	68	52.9%	1	0%	possibly_damaging(0.938)	tolerated(0.13)	deleterious(0.636)	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
MAT2B	27430	genome.wustl.edu	37	5	162943750	162943750	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421814	+1	known	p.E251	0.000	48	0%	60	45%	0	-	-	-	-	HMMPfam_RmlD_sub_bind
RARS	5917	genome.wustl.edu	37	5	167919668	167919668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002887.3	+1	reviewed	p.L62P	1.000	107	0%	80	41.2%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain
SLIT3	6586	genome.wustl.edu	37	5	168134982	168134982	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.K948R	1.000	8	0.000	18	0.333	1	0%	probably_damaging(0.998)	tolerated(0.31)	deleterious(0.501)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin
DOCK2	1794	genome.wustl.edu	37	5	169506071	169506071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004946.2	+1	validated	p.R1696L	0.999	43	0%	51	43.1%	1	0%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
MSX2	4488	genome.wustl.edu	37	5	174156441	174156441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002449.4	+1	reviewed	p.F220S	1.000	22	0%	87	51.7%	69	43.4%	possibly_damaging(0.694)	tolerated(0.09)	deleterious(0.545)	NULL
UIMC1	51720	genome.wustl.edu	37	5	176395953	176395953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016290.3	-1	provisional	p.Q268R	0.993	33	0%	105	42.9%	1	100%	benign(0.133)	tolerated(0.17)	neutral(0.070)	NULL
NSD1	64324	genome.wustl.edu	37	5	176687066	176687066	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.I1681	0.990	58	0%	138	39.1%	0	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger
RAB24	53917	genome.wustl.edu	37	5	176728799	176728799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031677.2	-1	validated	p.G186D	1.000	18	0%	121	43%	221	45.2%	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176824910	176824910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003052.4	+1	reviewed	p.A515T	0.999	19	0%	95	48.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Na_Pi_cotrans
ZFP2	80108	genome.wustl.edu	37	5	178358543	178358543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030613.2	+1	provisional	p.N77D	0.001	87	0%	82	54.9%	2	0%	benign(0.049)	tolerated(0.29)	neutral(0.032)	NULL
GRM6	2916	genome.wustl.edu	37	5	178419154	178419154	+	Silent	SNP	G	G	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000319065	-1	known	p.G93	0.005	14	0%	20	35%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
ZNF879	345462	genome.wustl.edu	37	5	178459787	178459787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136116.1	+1	provisional	p.R280G	1.000	54	0%	70	48.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BTNL3	10917	genome.wustl.edu	37	5	180432438	180432438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197975.1	+1	validated	p.K323E	0.150	110	0%	99	63.6%	0	-	possibly_damaging(0.902)	tolerated(1)	neutral(0.357)	HMMSmart_PRY
TRIM41	90933	genome.wustl.edu	37	5	180659802	180659802	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503114	+1	known	p.V332A	1.000	7	0.000	37	0.568	4	0%	-	-	-	NULL
SERPINB9	5272	genome.wustl.edu	37	6	2890602	2890602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004155.4	-1	validated	p.L309P	1.000	68	0%	66	50%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
FAM50B	26240	genome.wustl.edu	37	6	3850586	3850586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012135.1	+1	provisional	p.K181E	0.999	6	0.000	13	0.462	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_XAP5
FAM50B	26240	genome.wustl.edu	37	6	3850879	3850879	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012135.1	+1	provisional	p.S278	1.000	16	0%	38	44.7%	12	0%	-	-	-	HMMPfam_XAP5
PRPF4B	8899	genome.wustl.edu	37	6	4032619	4032619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.K290E	1.000	69	0%	51	54.9%	0	-	probably_damaging(0.985)	tolerated(0.16)	deleterious(0.491)	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4052327	4052327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.S771G	1.000	73	0%	106	38.7%	1	100%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GCM2	9247	genome.wustl.edu	37	6	10876230	10876230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004752.3	-1	reviewed	p.H159R	1.000	191	0%	234	41.9%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_GCM,superfamily_GCM_motif
LOC221710	221710	genome.wustl.edu	37	6	11134758	11134758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135575.1	+1	validated	p.S67P	0.002	146	0%	49	44.9%	7	28.5%	benign(0.278)	-	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124532	12124532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.N1502D	0.000	76	0%	72	43.1%	0	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
GFOD1	54438	genome.wustl.edu	37	6	13470128	13470128	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033069.2	-1	predicted	p.M129L	0.000	235	0%	114	43.9%	0	-	unknown(0)	-	-	NULL
DTNBP1	84062	genome.wustl.edu	37	6	15638032	15638032	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032122.3	-1	reviewed	p.Y55	1.000	55	0%	86	45.3%	7	57.1%	-	-	-	NULL
KIF13A	63971	genome.wustl.edu	37	6	17873612	17873612	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022113.4	-1	validated	p.Y72	1.000	161	0%	162	43.8%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000200681	0	genome.wustl.edu	37	6	18307268	18307268	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000363811	-1	novel	NULL	0.437	133	0%	99	45.5%	0	-	-	-	-	-
MBOAT1	154141	genome.wustl.edu	37	6	20144532	20144532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080480.1	-1	provisional	p.V113A	1.000	136	0%	103	42.7%	6	66.6%	benign(0.014)	tolerated(0.26)	neutral(0.035)	NULL
CDKAL1	54901	genome.wustl.edu	37	6	20546588	20546588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017774.3	+1	reviewed	p.S3P	1.000	107	0%	104	44.2%	2	0%	benign(0.001)	deleterious(0.03)	neutral(0.364)	NULL
KIAA0319	9856	genome.wustl.edu	37	6	24564457	24564457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014809.3	-1	reviewed	p.D802N	0.994	10	0%	17	47.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00089,superfamily_PKD domain
ACOT13	55856	genome.wustl.edu	37	6	24701831	24701831	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018473.3	+1	reviewed	p.H137	1.000	148	0%	127	30.7%	158	56.9%	-	-	-	superfamily_Thioesterase/thiol ester dehydrase-isomerase
HIST1H2BF	8343	genome.wustl.edu	37	6	26199855	26199855	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003522.3	+1	reviewed	p.Q23	1.000	43	0%	142	40.1%	0	-	-	-	-	superfamily_Histone-fold
POM121L2	94026	genome.wustl.edu	37	6	27278260	27278260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444565	-1	known	p.S564P	0.007	62	0%	84	41.7%	0	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
HIST1H3J	8356	genome.wustl.edu	37	6	27858425	27858425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003535.2	-1	reviewed	p.L49S	1.000	7	0.000	25	0.560	0	-	probably_damaging(1)	-	-	HMMSmart_SM00428,superfamily_Histone-fold
GPX5	2880	genome.wustl.edu	37	6	28501822	28501822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001509.2	+1	reviewed	p.N182D	1.000	65	0%	60	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thiordxn-like_fd
TRIM31	11074	genome.wustl.edu	37	6	30079484	30079484	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007028.3	-1	reviewed	p.K152Q	0.369	197	0%	317	47%	2	100%	possibly_damaging(0.88)	tolerated(0.14)	deleterious(0.593)	NULL
ABCF1	23	genome.wustl.edu	37	6	30554058	30554058	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025091.1	+1	reviewed	p.S621R	1.000	14	0%	35	34.3%	11	45.4%	possibly_damaging(0.598)	deleterious(0.05)	deleterious(0.552)	NULL
ATF6B	1388	genome.wustl.edu	37	6	32084593	32084593	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004381.4	-1	reviewed	e16-1	1.000	28	0%	99	48.5%	1	100%	-	-	-	-
ITPR3	3710	genome.wustl.edu	37	6	33653552	33653552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.P1872L	1.000	8	0.000	32	0.438	14	64.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RIH_assoc
LEMD2	221496	genome.wustl.edu	37	6	33746088	33746088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181336.3	-1	validated	p.M363V	1.000	24	0%	93	38.7%	25	52%	benign(0.081)	deleterious(0.02)	neutral(0.389)	NULL
GRM4	2914	genome.wustl.edu	37	6	34004123	34004123	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.A588	0.067	4	0.000	27	0.444	0	-	-	-	-	NULL
ANKS1A	23294	genome.wustl.edu	37	6	35047375	35047375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015245.2	+1	validated	p.H789R	0.998	26	0%	75	52%	1	0%	possibly_damaging(0.553)	tolerated(0.24)	neutral(0.226)	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology
RPL10A	4736	genome.wustl.edu	37	6	35438049	35438049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007104.4	+1	reviewed	p.P135L	1.000	37	0%	88	43.2%	2323	47%	benign(0.195)	deleterious(0.05)	neutral(0.364)	HMMPfam_Ribosomal_L1,PatternScan_RIBOSOMAL_L1,superfamily_Ribosomal protein L1
PNPLA1	285848	genome.wustl.edu	37	6	36259299	36259299	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145716.1	+1	validated	p.S41	0.268	17	0%	70	44.3%	0	-	-	-	-	HMMPfam_Patatin
MTCH1	23787	genome.wustl.edu	37	6	36938237	36938237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014341.1	-1	provisional	p.M306V	1.000	15	0%	45	42.2%	70	48.5%	benign(0)	tolerated(0.43)	neutral(0.013)	superfamily_Mitochondrial carrier
TMEM217	221468	genome.wustl.edu	37	6	37186319	37186319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145316.3	-1	validated	p.I163T	0.000	82	0%	90	42.2%	0	-	benign(0.031)	tolerated(0.06)	neutral(0.324)	NULL
CCDC167	154467	genome.wustl.edu	37	6	37452636	37452636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138493.2	-1	validated	p.R47K	0.965	34	0%	95	53.7%	57	31.5%	benign(0)	tolerated(0.98)	-	NULL
MDGA1	266727	genome.wustl.edu	37	6	37605869	37605869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505425	-1	known	p.L963P	0.000	27	0%	85	47.1%	0	-	unknown(0)	tolerated(0.15)	-	NULL
DNAH8	1769	genome.wustl.edu	37	6	38890885	38890885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001371.2	+1	validated	p.T3355A	0.001	40	0%	35	71.4%	0	-	benign(0.01)	tolerated(1)	neutral(0.001)	NULL
DAAM2	23500	genome.wustl.edu	37	6	39835441	39835441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015345.2	+1	validated	p.L195P	1.000	12	0%	28	25%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Drf_GBD
LRFN2	57497	genome.wustl.edu	37	6	40400660	40400660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020737.1	-1	provisional	p.I65V	1.000	10	0%	20	30%	0	-	benign(0)	tolerated(0.99)	-	superfamily_L domain-like
TREML2	79865	genome.wustl.edu	37	6	41162432	41162432	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024807.2	-1	validated	p.L172	0.000	29	0%	150	42.7%	0	-	-	-	-	NULL
TREML4	285852	genome.wustl.edu	37	6	41197400	41197400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000358696	+1	known	p.C163R	0.002	31	0%	47	40.4%	0	-	-	-	-	NULL
FOXP4	116113	genome.wustl.edu	37	6	41552534	41552534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012426.1	+1	reviewed	p.P110S	1.000	9	0.000	40	0.550	5	40%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	NULL
CUL7	9820	genome.wustl.edu	37	6	43011323	43011323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.L1073P	1.000	5	0.000	14	0.357	9	55.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
CUL7	9820	genome.wustl.edu	37	6	43014723	43014723	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.G764	0.255	27	0%	72	40.3%	4	100%	-	-	-	NULL
NFKBIE	4794	genome.wustl.edu	37	6	44230331	44230331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004556.2	-1	validated	p.Q284R	1.000	17	0%	105	56.2%	7	0%	possibly_damaging(0.584)	tolerated(0.16)	neutral(0.261)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
CDC5L	988	genome.wustl.edu	37	6	44358050	44358050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001253.2	+1	reviewed	p.W31R	1.000	221	0%	282	39%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SANT,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding
CDC5L	988	genome.wustl.edu	37	6	44397637	44397637	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001253.2	+1	reviewed	p.K694M	1.000	67	0%	57	43.9%	17	41.1%	benign(0.29)	tolerated(0.12)	neutral(0.350)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46657394	46657394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.N510S	0.001	61	0%	151	47%	0	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	HMMPfam_TUDOR
TDRD6	221400	genome.wustl.edu	37	6	46659036	46659036	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.K1057	0.995	93	0%	165	45.5%	0	-	-	-	-	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
GPR116	221395	genome.wustl.edu	37	6	46834771	46834771	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098518.1	-1	validated	p.P575	0.216	101	0%	86	47.7%	0	-	-	-	-	NULL
GPR115	221393	genome.wustl.edu	37	6	47681542	47681542	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153838.3	+1	validated	p.S187	0.000	33	0%	35	54.3%	0	-	-	-	-	NULL
MUT	4594	genome.wustl.edu	37	6	49425413	49425413	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000255.3	-1	reviewed	p.Y248	0.994	108	0%	79	40.5%	5	60%	-	-	-	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
LOC647163	647163	genome.wustl.edu	37	6	52268209	52268209	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001725956.2	-1	model	p.E17*	1.000	17	0%	67	41.8%	0	-	benign(0.027)	tolerated(0.47)	neutral(0.012)	NULL
MLIP	90523	genome.wustl.edu	37	6	54034342	54034342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138569.2	+1	validated	p.P304Q	1.000	232	0%	88	47.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
DST	667	genome.wustl.edu	37	6	56328521	56328521	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.L4954	0.911	29	0%	52	50%	5	20%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56458981	56458981	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E1446A	1.000	34	0%	27	44.4%	0	-	benign(0.089)	-	-	NULL
DST	667	genome.wustl.edu	37	6	56463430	56463430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.E1301D	1.000	249	0%	86	39.5%	1	100%	possibly_damaging(0.796)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56489961	56489961	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.I1071	0.993	176	0%	195	42.6%	0	-	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
KIAA1586	57691	genome.wustl.edu	37	6	56918938	56918938	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020931.2	+1	validated	p.S547	0.995	79	0%	74	36.5%	0	-	-	-	-	NULL
ZNF451	26036	genome.wustl.edu	37	6	57015654	57015654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.F916I	1.000	141	0%	80	47.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRIM2	5558	genome.wustl.edu	37	6	57246834	57246834	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000425433	+1	known	p.P187	1.000	309	0%	217	26.7%	2	50%	-	-	-	HMMPfam_DNA_primase_lrg
PHF3	23469	genome.wustl.edu	37	6	64421206	64421206	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505138	+1	known	p.L104R	1.000	107	0%	75	48%	7	57.1%	-	-	-	HMMPfam_SPOC
COL19A1	1310	genome.wustl.edu	37	6	70900040	70900040	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.E1017*	1.000	347	0%	118	42.4%	0	-	-	-	-	NULL
FAM135A	57579	genome.wustl.edu	37	6	71190664	71190664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.D201E	1.000	167	0%	84	44%	1	0%	benign(0.1)	tolerated(0.84)	neutral(0.008)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71237993	71237993	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	e13-2	1.000	130	0%	80	50%	0	-	-	-	-	-
SMAP1	60682	genome.wustl.edu	37	6	71567931	71567931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044305.1	+1	reviewed	p.Q423R	1.000	12	0%	27	37%	7	28.5%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	NULL
B3GAT2	135152	genome.wustl.edu	37	6	71571416	71571416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080742.2	-1	reviewed	p.L308I	1.000	120	0%	81	44.4%	28	25%	probably_damaging(0.96)	deleterious(0.04)	deleterious(0.752)	superfamily_Nucleotide-diphospho-sugar transferases
COL12A1	1303	genome.wustl.edu	37	6	75827141	75827141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004370.5	-1	reviewed	p.I2492	0.128	106	0%	54	46.3%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
FILIP1	27145	genome.wustl.edu	37	6	76024555	76024555	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015687.2	-1	validated	p.L331	0.987	287	0%	160	40%	0	-	-	-	-	HMMPfam_CortBP2
MYO6	4646	genome.wustl.edu	37	6	76532568	76532568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004999.3	+1	reviewed	p.C63R	1.000	229	0.4%	74	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
IMPG1	3617	genome.wustl.edu	37	6	76782178	76782178	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001563.2	-1	provisional	p.F10I	0.672	253	0%	100	37%	0	-	benign(0.011)	deleterious(0.04)	neutral(0.349)	NULL
PHIP	55023	genome.wustl.edu	37	6	79655035	79655035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.S1604P	0.865	270	0%	138	43.5%	3	33.3%	benign(0)	tolerated(0.83)	neutral(0.001)	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83847765	83847765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015018.2	+1	validated	p.Y1335C	1.000	86	0%	59	42.4%	0	-	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
RIPPLY2	134701	genome.wustl.edu	37	6	84566959	84566959	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009994.1	+1	provisional	e4-2	1.000	98	0%	171	45%	0	-	-	-	-	-
KIAA1009	22832	genome.wustl.edu	37	6	84884490	84884490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	p.E661*	1.000	285	0%	120	37.5%	0	-	-	-	-	NULL
KIAA1009	22832	genome.wustl.edu	37	6	84904689	84904689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	p.N314D	0.000	419	0%	475	42.9%	0	-	benign(0.153)	tolerated(0.08)	neutral(0.314)	NULL
LOC100289483	100289483	genome.wustl.edu	37	6	86351149	86351149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342647.1	+1	model	p.C21R	1.000	145	0%	202	44.1%	13	61.5%	-	-	-	NULL
ORC3	23595	genome.wustl.edu	37	6	88344575	88344575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181837.1	+1	reviewed	p.L400I	0.658	216	0%	126	42.9%	4	100%	benign(0.189)	tolerated(0.18)	neutral(0.074)	NULL
RNGTT	8732	genome.wustl.edu	37	6	89479568	89479568	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003800.3	-1	validated	p.D455A	1.000	259	0%	80	41.2%	2	100%	benign(0.03)	tolerated(0.21)	neutral(0.045)	HMMPfam_mRNA_cap_enzyme,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
MDN1	23195	genome.wustl.edu	37	6	90382011	90382011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.T4568A	0.996	42	0%	77	46.8%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
MAP3K7	6885	genome.wustl.edu	37	6	91257010	91257010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145331.1	-1	reviewed	p.S393P	1.000	88	0%	139	40.3%	7	42.8%	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	NULL
SIM1	6492	genome.wustl.edu	37	6	100838931	100838931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.S536Y	1.000	40	0%	64	43.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_SIM_C
LIN28B	389421	genome.wustl.edu	37	6	105526633	105526633	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004317.2	+1	provisional	p.S243*	0.991	59	0%	24	41.7%	0	-	-	-	-	NULL
BVES	11149	genome.wustl.edu	37	6	105577343	105577343	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007073.3	-1	reviewed	p.R88*	1.000	52	0%	103	40.8%	0	-	-	-	-	NULL
AKD1	221264	genome.wustl.edu	37	6	109863339	109863339	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424296	-1	known	p.V166	0.977	337	0%	155	47.7%	0	-	-	-	-	superfamily_SSF52540
SLC22A16	85413	genome.wustl.edu	37	6	110757086	110757086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033125.2	-1	provisional	p.Y464H	0.998	77	0%	88	43.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC16A10	117247	genome.wustl.edu	37	6	111498515	111498515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018593.4	+1	validated	p.K197Q	1.000	65	0%	107	44.9%	0	-	possibly_damaging(0.752)	deleterious(0.02)	deleterious(0.659)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
TSPYL4	23270	genome.wustl.edu	37	6	116574636	116574636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021648.4	-1	validated	p.V179A	0.000	32	0%	106	50%	4	75%	benign(0.005)	tolerated(0.94)	-	NULL
FAM26E	254228	genome.wustl.edu	37	6	116836906	116836906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153711.2	+1	validated	p.N228K	0.000	113	0%	91	41.8%	0	-	benign(0.004)	tolerated(0.3)	neutral(0.029)	NULL
MAN1A1	4121	genome.wustl.edu	37	6	119628150	119628150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005907.2	-1	reviewed	p.K204R	1.000	210	0%	119	47.1%	0	-	benign(0.021)	tolerated(0.42)	neutral(0.015)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
SERINC1	57515	genome.wustl.edu	37	6	122775014	122775014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020755.2	-1	provisional	p.I164V	1.000	102	0%	80	42.5%	3	0%	benign(0.333)	deleterious(0)	deleterious(0.549)	HMMPfam_Serinc
CLVS2	134829	genome.wustl.edu	37	6	123319050	123319050	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010852.2	+1	provisional	p.D43A	1.000	35	0%	156	43.6%	0	-	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_CRAL_TRIO_N,superfamily_CRAL/TRIO N-terminal domain
HINT3	135114	genome.wustl.edu	37	6	126298820	126298820	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138571.4	+1	validated	p.*183R	1.000	177	0%	76	38.2%	2	50%	-	-	-	NULL
THEMIS	387357	genome.wustl.edu	37	6	128040909	128040909	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010923.2	-1	reviewed	p.K606	0.031	203	0%	107	45.8%	0	-	-	-	-	NULL
L3MBTL3	84456	genome.wustl.edu	37	6	130387503	130387503	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032438.1	+1	validated	p.C290	1.000	66	0%	45	40%	4	100%	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
EPB41L2	2037	genome.wustl.edu	37	6	131229989	131229989	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001431.3	-1	validated	p.P275	0.973	169	0%	83	12%	2	50%	-	-	-	HMMPfam_FERM_N,PatternScan_FERM_1,HMMSmart_B41,superfamily_SSF54236
STX7	8417	genome.wustl.edu	37	6	132789610	132789610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003569.2	-1	validated	p.D181G	1.000	267	0%	123	37.4%	7	14.2%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
HBS1L	10767	genome.wustl.edu	37	6	135286419	135286419	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006620.3	-1	reviewed	p.*685G	1.000	150	0%	71	45.1%	28	35.7%	-	-	-	NULL
REPS1	85021	genome.wustl.edu	37	6	139241431	139241431	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415951	-1	known	p.I168V	0.887	354	0%	181	38.1%	3	33.3%	-	-	-	NULL
NMBR	4829	genome.wustl.edu	37	6	142396996	142396996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.P321Q	1.000	58	0%	45	35.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
GPR126	57211	genome.wustl.edu	37	6	142689047	142689047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198569.2	+1	reviewed	p.V149F	1.000	51	0%	51	41.2%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_CUB,superfamily_CUB
HIVEP2	3097	genome.wustl.edu	37	6	143091489	143091489	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.E1463*	1.000	153	0%	243	44.9%	3	66.6%	-	-	-	NULL
HIVEP2	3097	genome.wustl.edu	37	6	143095185	143095185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006734.3	-1	provisional	p.N231H	1.000	50	0%	105	41.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LTV1	84946	genome.wustl.edu	37	6	144178922	144178922	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032860.3	+1	provisional	p.E191	1.000	107	0%	88	40.9%	13	38.4%	-	-	-	HMMPfam_LTV
UTRN	7402	genome.wustl.edu	37	6	144837436	144837436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.F1772L	0.938	106	0%	40	32.5%	3	100%	benign(0)	tolerated(1)	-	NULL
UTRN	7402	genome.wustl.edu	37	6	145093051	145093051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007124.2	+1	reviewed	p.T2835K	1.000	51	0%	51	45.1%	2	50%	possibly_damaging(0.715)	deleterious(0.04)	deleterious(0.608)	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP
RAET1L	154064	genome.wustl.edu	37	6	150342213	150342213	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130900.2	-1	validated	p.S153	0.001	265	0%	400	47.2%	0	-	-	-	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
MTHFD1L	25902	genome.wustl.edu	37	6	151358233	151358233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015440.3	+1	validated	p.I943V	1.000	44	0%	45	37.8%	37	40.5%	possibly_damaging(0.734)	tolerated(0.3)	neutral(0.297)	HMMPfam_FTHFS,superfamily_P-loop containing nucleoside triphosphate hydrolases
RMND1	55005	genome.wustl.edu	37	6	151766483	151766483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017909.2	-1	validated	p.Q155R	1.000	93	0%	161	41%	8	62.5%	benign(0.23)	deleterious(0.03)	neutral(0.388)	NULL
SYNE1	23345	genome.wustl.edu	37	6	152629695	152629696	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.H5758fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152652073	152652073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.I4583V	1.000	277	0%	161	41%	0	-	possibly_damaging(0.868)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152652486	152652486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.R4445I	0.997	43	0%	79	43%	0	-	probably_damaging(0.999)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152751763	152751763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182961.2	-1	reviewed	p.T1515A	0.996	128	0%	97	40.2%	0	-	benign(0.394)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
FBXO5	26271	genome.wustl.edu	37	6	153292541	153292541	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.K367	1.000	60	0%	104	31.7%	2	50%	-	-	-	NULL
FBXO5	26271	genome.wustl.edu	37	6	153296143	153296143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.M239I	1.000	191	0%	209	37.8%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
FBXO5	26271	genome.wustl.edu	37	6	153296570	153296570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012177.3	-1	reviewed	p.G97E	0.130	209	0%	271	34.7%	2	100%	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
ARID1B	57492	genome.wustl.edu	37	6	157495218	157495218	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017519.2	+1	validated	p.E963D	1.000	90	0%	78	39.7%	3	66.6%	possibly_damaging(0.617)	tolerated(0.56)	neutral(0.221)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160468290	160468290	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.N717	0.036	64	0%	77	45.5%	0	-	-	-	-	superfamily_Mannose 6-phosphate receptor domain
IGF2R	3482	genome.wustl.edu	37	6	160501309	160501309	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	e39+2	0.972	15	0%	50	36%	1	100%	-	-	-	-
AGPAT4	56895	genome.wustl.edu	37	6	161557582	161557582	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020133.2	-1	reviewed	p.L376R	1.000	32	0%	98	38.8%	4	0%	benign(0.013)	tolerated(0.86)	neutral(0.001)	NULL
UNC93A	54346	genome.wustl.edu	37	6	167705020	167705020	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018974.3	+1	validated	p.F15V	0.996	122	0%	172	36%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF895,superfamily_MFS_gen_substrate_transporter
LOC100289471	100289471	genome.wustl.edu	37	6	169648505	169648505	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342681.1	+1	model	e1-2	0.000	6	0.000	39	0.410	0	-	-	-	-	-
PHF10	55274	genome.wustl.edu	37	6	170110429	170110429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018288.3	-1	reviewed	p.S339Y	0.006	99	0%	155	41.9%	9	44.4%	benign(0.159)	tolerated(0.07)	neutral(0.333)	NULL
SUN1	23353	genome.wustl.edu	37	7	883046	883046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130965.2	+1	reviewed	p.F183fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MRP
GNA12	2768	genome.wustl.edu	37	7	2771138	2771138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007353.2	-1	validated	p.N275D	1.000	23	0%	71	46.5%	9	66.6%	probably_damaging(0.982)	tolerated(0.58)	neutral(0.431)	HMMPfam_G-alpha,superfamily_SSF52540
CARD11	84433	genome.wustl.edu	37	7	2983886	2983886	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.K215T	1.000	16	0%	40	42.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PMS2	5395	genome.wustl.edu	37	7	6035205	6035205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000535.5	-1	reviewed	p.Q288R	1.000	59	0%	119	48.7%	7	28.5%	possibly_damaging(0.917)	deleterious(0.02)	deleterious(0.751)	HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like
CYTH3	9265	genome.wustl.edu	37	7	6213283	6213283	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004227.3	-1	reviewed	e6+1	1.000	115	0%	170	50%	0	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11082384	11082384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000303905	+1	known	p.L752P	1.000	306	0%	184	44%	27	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RING,HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,PatternScan_ZF_PHD_1,HMMPfam_PHD
THSD7A	221981	genome.wustl.edu	37	7	11419327	11419327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	p.V1507A	0.960	35	0%	41	56.1%	1	0%	benign(0.122)	tolerated(0.76)	neutral(0.011)	NULL
THSD7A	221981	genome.wustl.edu	37	7	11501636	11501636	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015204.2	-1	validated	e10+2	1.000	34	0%	44	50%	1	100%	-	-	-	-
TWISTNB	221830	genome.wustl.edu	37	7	19738110	19738110	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002926.1	-1	validated	p.K282	0.295	85	0%	113	43.4%	1	0%	-	-	-	NULL
MACC1	346389	genome.wustl.edu	37	7	20197899	20197899	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182762.3	-1	validated	p.Y695	1.000	155	0%	76	46.1%	1	0%	-	-	-	superfamily_DEATH domain
DNAH11	8701	genome.wustl.edu	37	7	21675637	21675637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.F1555S	1.000	119	0%	104	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
DNAH11	8701	genome.wustl.edu	37	7	21882215	21882215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.I3589T	1.000	147	0%	93	50.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GPNMB	10457	genome.wustl.edu	37	7	23313810	23313810	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005340.1	+1	reviewed	p.L562	1.000	47	0%	39	38.5%	5	0%	-	-	-	NULL
OSBPL3	26031	genome.wustl.edu	37	7	24892253	24892253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.V343A	1.000	26	0%	42	47.6%	2	100%	benign(0.015)	deleterious(0.03)	neutral(0.365)	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26225319	26225319	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	p.T667	0.010	49	0%	82	35.4%	31	22.5%	-	-	-	NULL
CBX3	11335	genome.wustl.edu	37	7	26251822	26251822	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007276.3	+1	reviewed	p.A182	1.000	70	0%	60	23.3%	4	50%	-	-	-	NULL
HOXA1	3198	genome.wustl.edu	37	7	27134120	27134120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.S316Y	1.000	15	0%	98	54.1%	0	-	benign(0.113)	deleterious(0)	neutral(0.454)	NULL
FKBP9	11328	genome.wustl.edu	37	7	33039856	33039856	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007270.3	+1	validated	p.Y452	0.422	74	0%	152	30.3%	4	25%	-	-	-	HMMPfam_FKBP_C,superfamily_SSF54534
BBS9	27241	genome.wustl.edu	37	7	33427642	33427642	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000434373	+1	known	p.*234R	0.996	62	0%	104	43.3%	5	20%	-	-	-	NULL
HECW1	23072	genome.wustl.edu	37	7	43540347	43540347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.L1163M	1.000	94	0%	128	36.7%	1	100%	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
ZMIZ2	83637	genome.wustl.edu	37	7	44802856	44802856	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031449.3	+1	validated	p.I568	1.000	31	0%	104	51.9%	94	59.5%	-	-	-	NULL
NACAD	23148	genome.wustl.edu	37	7	45120312	45120312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000258775	-1	known	p.Q1534R	1.000	15	0%	89	43.8%	3	33.3%	benign(0.359)	deleterious(0)	deleterious(0.558)	NULL
HUS1	3364	genome.wustl.edu	37	7	48008864	48008864	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004507.2	-1	reviewed	p.L198I	0.800	409	0%	286	42.7%	4	50%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Hus1
UPP1	7378	genome.wustl.edu	37	7	48139359	48139359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003364.2	+1	validated	p.F46S	1.000	124	0%	146	42.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Purine and uridine phosphorylases
ZNF107	51427	genome.wustl.edu	37	7	64167168	64167168	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013746.1	+1	validated	p.C162	0.035	32	0%	46	45.7%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RABGEF1	27342	genome.wustl.edu	37	7	66248718	66248718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014504.2	+1	validated	p.T135A	1.000	104	0%	72	33.3%	0	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	superfamily_SSF109993
RABGEF1	27342	genome.wustl.edu	37	7	66270163	66270163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014504.2	+1	validated	p.D286G	1.000	69	0%	75	45.3%	15	46.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993
LAT2	7462	genome.wustl.edu	37	7	73635986	73635986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014146.3	+1	reviewed	p.Y118H	0.007	45	0%	109	41.3%	1	0%	possibly_damaging(0.926)	tolerated(0.07)	deleterious(0.694)	NULL
PION	54103	genome.wustl.edu	37	7	76957927	76957927	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017439.3	-1	validated	p.N587K	0.000	181	0%	94	33%	8	87.5%	benign(0.014)	tolerated(0.88)	neutral(0.001)	NULL
HGF	3082	genome.wustl.edu	37	7	81388045	81388045	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000601.4	-1	reviewed	p.K110	0.881	203	0%	128	44.5%	1	0%	-	-	-	HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Kringle-like,superfamily_Hairpin loop containing domain-like
PCLO	27445	genome.wustl.edu	37	7	82453556	82453556	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426442	-1	known	p.Q1133R	1.000	95	0%	100	40%	1	100%	-	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82580023	82580023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.E3294V	1.000	57	0%	76	42.1%	0	-	probably_damaging(0.995)	-	-	NULL
PCLO	27445	genome.wustl.edu	37	7	82580161	82580161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.Q3248R	1.000	28	0%	40	37.5%	0	-	possibly_damaging(0.891)	-	-	NULL
STEAP4	79689	genome.wustl.edu	37	7	87912245	87912245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024636.2	-1	validated	p.K232R	0.853	112	0%	66	42.4%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	NULL
STEAP2	261729	genome.wustl.edu	37	7	89866209	89866209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394632	+1	known	p.F397S	0.004	141	0%	98	45.9%	21	71.4%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89903409	89903409	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039706.2	+1	validated	p.P323	0.995	124	0%	82	35.4%	2	0%	-	-	-	superfamily_ARM-type_fold
AKAP9	10142	genome.wustl.edu	37	7	91630937	91630937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E569G	1.000	72	0%	48	41.7%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
AKAP9	10142	genome.wustl.edu	37	7	91724479	91724479	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.E3241*	1.000	87	0%	53	37.7%	3	0%	-	-	-	NULL
KRIT1	889	genome.wustl.edu	37	7	91855063	91855063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004912.3	-1	reviewed	p.K409E	1.000	436	0%	369	46.6%	6	50%	benign(0.103)	deleterious(0.03)	neutral(0.372)	superfamily_Ankyrin repeat
PEX1	5189	genome.wustl.edu	37	7	92148327	92148327	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000466.2	-1	reviewed	p.A113	0.998	274	0%	191	39.8%	0	-	-	-	-	superfamily_ADC-like,HMMPfam_PEX-1N
SAMD9	54809	genome.wustl.edu	37	7	92733856	92733856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017654.2	-1	validated	p.S519P	0.970	104	0%	88	47.7%	1	100%	possibly_damaging(0.861)	tolerated(0.17)	neutral(0.392)	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92765062	92765062	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.L75M	0.000	170	0%	119	43.7%	0	-	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	superfamily_SAM/Pointed domain
ASNS	440	genome.wustl.edu	37	7	97486112	97486112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001673.4	-1	reviewed	p.G307V	1.000	98	0%	75	44%	24	70.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asn_synthase,superfamily_SSF52402
ASNS	440	genome.wustl.edu	37	7	97493674	97493674	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001673.4	-1	reviewed	p.T128	0.733	99	0%	85	29.4%	17	70.5%	-	-	-	HMMPfam_GATase_2,superfamily_SSF56235
TECPR1	25851	genome.wustl.edu	37	7	97872903	97872903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015395.1	-1	provisional	p.I178T	1.000	21	0%	58	39.7%	3	33.3%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98547077	98547077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.D1584G	1.000	22	0%	50	32%	1	0%	possibly_damaging(0.783)	tolerated(0.09)	deleterious(0.589)	superfamily_ARM repeat
PTCD1	26024	genome.wustl.edu	37	7	99032599	99032599	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015545.2	-1	validated	p.F89	1.000	31	0%	109	36.7%	0	-	-	-	-	NULL
TAF6	6878	genome.wustl.edu	37	7	99709413	99709413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005641.2	-1	reviewed	p.I280V	1.000	24	0%	127	39.4%	16	43.7%	possibly_damaging(0.714)	deleterious(0.02)	deleterious(0.641)	NULL
AGFG2	3268	genome.wustl.edu	37	7	100148117	100148117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006076.4	+1	reviewed	p.K138N	1.000	157	0%	170	45.9%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
PCOLCE	5118	genome.wustl.edu	37	7	100204049	100204049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002593.3	+1	reviewed	p.S246P	1.000	9	0.000	64	0.297	102	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ZAN	7455	genome.wustl.edu	37	7	100391654	100391654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427578	+1	known	p.Q2688H	0.001	9	0.000	38	0.474	0	-	unknown(0)	-	-	NULL
SRRT	51593	genome.wustl.edu	37	7	100485720	100485720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015908.5	+1	validated	p.L795R	1.000	28	0%	184	47.3%	167	40.1%	possibly_damaging(0.844)	tolerated(0.35)	neutral(0.344)	HMMPfam_ARS2
ACHE	43	genome.wustl.edu	37	7	100490887	100490887	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015831.2	-1	reviewed	p.E323*	0.975	8	0.000	59	0.508	0	-	-	-	-	HMMPfam_COesterase,superfamily_SSF53474
MUC17	140453	genome.wustl.edu	37	7	100681252	100681252	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.P2185	0.134	113	0%	121	36.4%	0	-	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100682702	100682702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.G2669*	0.003	73	0%	113	50.4%	0	-	-	-	-	NULL
FIS1	51024	genome.wustl.edu	37	7	100883143	100883143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016068.2	-1	validated	p.G135S	1.000	6	0.000	41	0.561	373	48.5%	unknown(0)	-	-	NULL
ORC5	5001	genome.wustl.edu	37	7	103807265	103807265	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002553.2	-1	reviewed	p.L315	0.997	105	0%	131	45.8%	4	75%	-	-	-	NULL
MLL5	55904	genome.wustl.edu	37	7	104751041	104751041	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.L1321R	0.268	127	0%	122	35.2%	16	25%	possibly_damaging(0.462)	tolerated(0.21)	neutral(0.196)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107570033	107570033	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002291.2	-1	reviewed	p.A1523	0.746	100	0%	122	42.6%	75	32%	-	-	-	NULL
TMEM168	64418	genome.wustl.edu	37	7	112407776	112407776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.T524A	1.000	28	0%	14	50%	1	0%	possibly_damaging(0.649)	tolerated(0.1)	deleterious(0.514)	NULL
TMEM168	64418	genome.wustl.edu	37	7	112415294	112415294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022484.4	-1	validated	p.L403S	1.000	74	0%	66	33.3%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MDFIC	29969	genome.wustl.edu	37	7	114619644	114619644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393486	+1	known	p.T101P	0.149	67	0%	42	31%	1	0%	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
WNT2	7472	genome.wustl.edu	37	7	116963072	116963072	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024047.1	-1	reviewed	NULL	1.000	7	0.000	55	0.473	1	0%	-	-	-	-
KCND2	3751	genome.wustl.edu	37	7	119915204	119915204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.R173K	1.000	25	0%	85	44.7%	0	-	benign(0.19)	tolerated(0.23)	neutral(0.059)	NULL
KCND2	3751	genome.wustl.edu	37	7	119915634	119915634	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.T316	0.000	43	0%	167	41.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LMOD2	442721	genome.wustl.edu	37	7	123296107	123296107	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.L30	1.000	27	0%	28	57.1%	0	-	-	-	-	NULL
ZNF800	168850	genome.wustl.edu	37	7	127013394	127013394	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000265827	-1	known	e4+2	1.000	160	0%	88	40.9%	0	-	-	-	-	-
OPN1SW	611	genome.wustl.edu	37	7	128415770	128415770	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001708.2	-1	reviewed	p.Q25	1.000	26	0%	57	35.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CCDC136	64753	genome.wustl.edu	37	7	128445448	128445448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022742.3	+1	validated	p.Q273R	0.378	25	0%	37	43.2%	0	-	benign(0.297)	tolerated(0.53)	neutral(0.100)	NULL
STRA8	346673	genome.wustl.edu	37	7	134939933	134939933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182489.1	+1	provisional	p.N292D	0.000	87	0%	108	43.5%	0	-	benign(0)	tolerated(1)	-	NULL
NUP205	23165	genome.wustl.edu	37	7	135285616	135285616	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	e16-2	1.000	380	0%	210	44.8%	0	-	-	-	-	-
ZC3HAV1	56829	genome.wustl.edu	37	7	138761051	138761051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020119.3	-1	reviewed	p.C560R	0.980	66	0%	103	41.7%	4	75%	possibly_damaging(0.828)	deleterious(0)	deleterious(0.758)	NULL
KLRG2	346689	genome.wustl.edu	37	7	139138360	139138360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393039	-1	known	p.P284H	1.000	7	0.000	26	0.462	0	-	unknown(0)	-	-	NULL
TRBV7-8	28590	genome.wustl.edu	37	7	142099635	142099635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390359	-1	known	p.Q56R	0.005	43	0%	51	27.5%	0	-	possibly_damaging(0.812)	tolerated(0.1)	deleterious(0.592)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
EPHA1	2041	genome.wustl.edu	37	7	143088824	143088824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005232.4	-1	reviewed	p.P914L	0.985	17	0%	53	37.7%	49	30.6%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
ARHGEF5	7984	genome.wustl.edu	37	7	144068342	144068342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.R1207Q	0.141	80	0%	140	20.7%	4	25%	benign(0.108)	deleterious(0.05)	neutral(0.354)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
CUL1	8454	genome.wustl.edu	37	7	148487426	148487426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003592.2	+1	validated	p.T567A	1.000	98	0%	148	46.6%	16	31.2%	benign(0.2)	tolerated(0.4)	neutral(0.035)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
ZNF786	136051	genome.wustl.edu	37	7	148769512	148769512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.P118T	0.000	58	0%	165	46.1%	2	50%	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
ZNF398	57541	genome.wustl.edu	37	7	148875741	148875741	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170686.2	+1	reviewed	p.D259	0.965	52	0%	121	49.6%	3	100%	-	-	-	NULL
ZNF862	643641	genome.wustl.edu	37	7	149558307	149558307	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099220.1	+1	provisional	p.R686	1.000	7	0.000	21	0.619	6	50%	-	-	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151879155	151879155	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170606.2	-1	reviewed	p.S1930	0.000	46	0%	37	48.6%	0	-	-	-	-	NULL
NOM1	64434	genome.wustl.edu	37	7	156756639	156756639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138400.1	+1	provisional	p.M651T	1.000	91	0%	105	43.8%	3	66.6%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
UBE3C	9690	genome.wustl.edu	37	7	157060412	157060412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014671.2	+1	validated	p.Y1072C	0.999	43	0%	136	36.8%	11	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MIR153-2	406945	genome.wustl.edu	37	7	157367048	157367048	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385225	-1	known	NULL	1.000	51	0%	126	42.9%	0	-	-	-	-	-
PTPRN2	5799	genome.wustl.edu	37	7	157959832	157959832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002847.3	-1	reviewed	p.D234G	0.035	5	0.000	43	0.488	0	-	benign(0.244)	deleterious(0.03)	neutral(0.389)	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158482643	158482643	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017760.5	-1	validated	p.G180	1.000	94	0%	63	49.2%	0	-	-	-	-	NULL
FBXO25	26260	genome.wustl.edu	37	8	385641	385641	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183421.1	+1	reviewed	p.E105	1.000	97	0%	55	45.5%	2	50%	-	-	-	NULL
XKR6	286046	genome.wustl.edu	37	8	10756041	10756041	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382461	-1	known	p.S226Y	1.000	66	0%	58	53.4%	0	-	-	-	-	HMMPfam_XK-related
BLK	640	genome.wustl.edu	37	8	11420545	11420545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001715.2	+1	validated	p.T413I	1.000	11	0%	60	45%	0	-	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PCM1	5108	genome.wustl.edu	37	8	17843071	17843071	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006197.3	+1	validated	p.H1408	1.000	95	0%	110	39.1%	10	40%	-	-	-	NULL
CSGALNACT1	55790	genome.wustl.edu	37	8	19276174	19276174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.Q407R	1.000	87	0%	57	36.8%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_CHGN,superfamily_SSF53448
LPL	4023	genome.wustl.edu	37	8	19813489	19813489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311322	+1	known	p.C305R	1.000	51	0%	50	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
LPL	4023	genome.wustl.edu	37	8	19818465	19818465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311322	+1	known	p.D398G	0.997	143	0%	45	28.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
FAM160B2	64760	genome.wustl.edu	37	8	21959293	21959293	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022749.5	+1	validated	p.P594	0.031	21	0%	110	45.5%	92	46.7%	-	-	-	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22477160	22477160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.W913R	1.000	9	0.000	52	0.365	46	41.3%	possibly_damaging(0.926)	tolerated(0.21)	neutral(0.418)	NULL
ADAM28	10863	genome.wustl.edu	37	8	24201060	24201060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014265.4	+1	reviewed	p.W651C	1.000	46	0%	91	45.1%	105	53.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	PatternScan_EGF_2
EXTL3	2137	genome.wustl.edu	37	8	28574701	28574701	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001440.2	+1	provisional	p.Y375	0.990	4	0.000	33	0.424	1	0%	-	-	-	HMMPfam_Exostosin
TEX15	56154	genome.wustl.edu	37	8	30700635	30700635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.A1967S	0.001	112	0%	45	40%	0	-	benign(0.005)	tolerated(0.11)	neutral(0.272)	NULL
TEX15	56154	genome.wustl.edu	37	8	30702526	30702526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.Q1336H	0.000	167	0%	119	42%	0	-	possibly_damaging(0.842)	tolerated(0.16)	neutral(0.382)	NULL
NRG1	3084	genome.wustl.edu	37	8	32505761	32505761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013959.3	+1	reviewed	p.K175N	0.886	105	0%	265	41.9%	0	-	benign(0.304)	tolerated(0.05)	neutral(0.440)	NULL
ADAM32	203102	genome.wustl.edu	37	8	39022345	39022345	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145004.5	+1	validated	p.L219	0.994	248	0%	172	38.4%	1	100%	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
ANK1	286	genome.wustl.edu	37	8	41522411	41522411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142445.1	-1	reviewed	p.L44P	1.000	10	0%	49	30.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
KAT6A	7994	genome.wustl.edu	37	8	41791031	41791031	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	p.Y1569	0.331	24	0%	118	44.1%	2	0%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41832220	41832220	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099412.1	-1	validated	e7+2	1.000	171	0%	105	31.4%	0	-	-	-	-	-
PRKDC	5591	genome.wustl.edu	37	8	48694765	48694765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.L3815P	0.981	55	0%	65	41.5%	3	0%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48697738	48697738	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.K3680N	0.922	150	0%	181	42%	3	33.3%	benign(0.085)	deleterious(0.03)	neutral(0.370)	superfamily_Protein kinase-like (PK-like)
PRKDC	5591	genome.wustl.edu	37	8	48848299	48848299	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314191	-1	known	p.S480	1.000	68	0%	79	54.4%	1	100%	-	-	-	superfamily_ARM repeat
MCM4	4173	genome.wustl.edu	37	8	48882479	48882479	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005914.2	+1	reviewed	p.L432	0.967	76	0%	140	43.6%	1	0%	-	-	-	HMMSmart_MCM
SNTG1	54212	genome.wustl.edu	37	8	51571167	51571167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018967.2	+1	reviewed	p.W328R	1.000	115	0%	54	46.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00233,superfamily_PH domain-like
PXDNL	137902	genome.wustl.edu	37	8	52325771	52325771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.L615I	0.997	201	0%	291	49.8%	0	-	benign(0.016)	tolerated(0.19)	neutral(0.050)	NULL
ST18	9705	genome.wustl.edu	37	8	53049159	53049159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014682.2	-1	validated	p.Q764R	1.000	40	0%	41	36.6%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	superfamily_SSF103637
ST18	9705	genome.wustl.edu	37	8	53092736	53092736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014682.2	-1	validated	p.S75G	0.378	121	0%	148	41.9%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53555272	53555272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.R1363Q	1.000	427	0.2%	134	48.5%	2	0%	possibly_damaging(0.747)	tolerated(0.1)	deleterious(0.560)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53558314	53558314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.R1312I	1.000	152	0%	68	41.2%	3	0%	possibly_damaging(0.856)	deleterious(0.01)	deleterious(0.736)	NULL
RB1CC1	9821	genome.wustl.edu	37	8	53568809	53568809	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014781.4	-1	reviewed	p.K1194Q	1.000	380	0%	210	39.5%	1	100%	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
IMPAD1	54928	genome.wustl.edu	37	8	57876368	57876368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017813.3	-1	validated	p.K355R	1.000	28	0%	31	41.9%	1	100%	benign(0.113)	tolerated(0.3)	neutral(0.037)	HMMPfam_Inositol_P
CHD7	55636	genome.wustl.edu	37	8	61763845	61763845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.D1878N	1.000	152	0%	89	37.1%	1	0%	possibly_damaging(0.937)	tolerated(0.14)	deleterious(0.633)	NULL
TRIM55	84675	genome.wustl.edu	37	8	67064668	67064668	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_184085.1	+1	reviewed	p.E348*	0.103	69	0%	65	41.5%	0	-	-	-	-	NULL
C8orf46	254778	genome.wustl.edu	37	8	67425791	67425791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152765.3	+1	validated	p.R120Q	1.000	17	0%	60	60%	2	100%	probably_damaging(0.975)	tolerated(0.13)	deleterious(0.669)	NULL
VCPIP1	80124	genome.wustl.edu	37	8	67576776	67576776	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025054.4	-1	validated	p.R806	1.000	133	0%	195	41.5%	1	100%	-	-	-	NULL
C8orf84	157869	genome.wustl.edu	37	8	73993283	73993283	+	Missense_Mutation	SNP	G	G	A	rs150036727	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153225.3	-1	validated	p.P127L	0.000	6	0.167	17	0.588	229	48.4%	benign(0.012)	tolerated(0.71)	neutral(0.002)	HMMSmart_TSP1
HNF4G	3174	genome.wustl.edu	37	8	76470901	76470901	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004133.4	+1	validated	p.D284	0.986	168	0%	71	39.4%	1	100%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
SLC10A5	347051	genome.wustl.edu	37	8	82605955	82605955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010893.2	-1	validated	p.Y418C	1.000	94	0%	54	50%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
RALYL	138046	genome.wustl.edu	37	8	85785545	85785545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100391.1	+1	validated	p.K213E	1.000	136	0%	70	51.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
PSKH2	85481	genome.wustl.edu	37	8	87076630	87076630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033126.1	-1	provisional	p.L139P	1.000	27	0%	63	49.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MMP16	4325	genome.wustl.edu	37	8	89068484	89068484	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005941.4	-1	reviewed	p.K415	1.000	106	0%	35	45.7%	0	-	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
OSGIN2	734	genome.wustl.edu	37	8	90937219	90937219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126111.1	+1	validated	p.P370L	1.000	72	0%	57	31.6%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_FAD/NAD(P)-binding domain
SLC26A7	115111	genome.wustl.edu	37	8	92350457	92350457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134266.1	+1	reviewed	p.Q292R	1.000	257	0.4%	105	42.9%	0	-	benign(0.025)	tolerated(0.48)	neutral(0.011)	HMMPfam_Sulfate_transp
RBM12B	389677	genome.wustl.edu	37	8	94746449	94746449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203390.2	-1	validated	p.H730Q	0.001	6	0.000	38	0.368	4	25%	benign(0.04)	deleterious(0.03)	neutral(0.367)	NULL
RBM12B	389677	genome.wustl.edu	37	8	94748072	94748072	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203390.2	-1	validated	p.H189	0.031	135	0%	230	42.2%	4	25%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SDC2	6383	genome.wustl.edu	37	8	97620652	97620652	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002998.3	+1	reviewed	p.T132	0.458	98	0%	57	43.9%	82	46.3%	-	-	-	HMMPfam_Syndecan
MATN2	4147	genome.wustl.edu	37	8	99019445	99019445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002380.3	+1	reviewed	p.K480N	1.000	20	0%	61	42.6%	3	33.3%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
NIPAL2	79815	genome.wustl.edu	37	8	99264767	99264767	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024759.1	-1	provisional	p.G100	0.960	25	0%	51	43.1%	0	-	-	-	-	HMMPfam_DUF803,superfamily_SSF103481
SPAG1	6674	genome.wustl.edu	37	8	101252959	101252959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003114.3	+1	reviewed	p.Y870F	1.000	110	0%	89	40.4%	4	100%	benign(0.214)	tolerated(0.53)	neutral(0.029)	NULL
RRM2B	50484	genome.wustl.edu	37	8	103237118	103237118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015713.4	-1	reviewed	p.K150N	1.000	149	0%	111	45%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Ribonuc_red_sm,superfamily_Ferritin-like
UBR5	51366	genome.wustl.edu	37	8	103359210	103359210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.D166G	1.000	26	0%	39	59%	1	100%	possibly_damaging(0.888)	tolerated(0.07)	deleterious(0.666)	NULL
OXR1	55074	genome.wustl.edu	37	8	107718791	107718791	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018002.2	+1	validated	p.R348*	1.000	58	0%	62	43.5%	1	0%	-	-	-	NULL
EIF3E	3646	genome.wustl.edu	37	8	109254087	109254087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001568.2	-1	validated	p.N49I	1.000	200	0%	131	41.2%	22	54.5%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_eIF3_N
NUDCD1	84955	genome.wustl.edu	37	8	110308739	110308739	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032869.3	-1	validated	p.C111	0.003	108	0%	82	46.3%	1	0%	-	-	-	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110504113	110504113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.W3376R	1.000	28	0%	60	38.3%	5	40%	benign(0.234)	tolerated(0.29)	neutral(0.053)	HMMSmart_SM00710,superfamily_Pectin lyase-like
CSMD3	114788	genome.wustl.edu	37	8	113314020	113314020	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	e53+2	1.000	112	0%	97	43.3%	0	-	-	-	-	-
CSMD3	114788	genome.wustl.edu	37	8	113348978	113348978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.D2308Y	1.000	93	0%	67	49.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113988155	113988155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.H418R	1.000	220	0.5%	150	36%	0	-	unknown(0)	deleterious(0)	-	NULL
UTP23	84294	genome.wustl.edu	37	8	117783954	117783954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032334.2	+1	validated	p.L208S	1.000	55	0%	50	44%	3	100%	possibly_damaging(0.914)	deleterious(0.02)	deleterious(0.749)	NULL
RAD21	5885	genome.wustl.edu	37	8	117875482	117875482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.R54Q	1.000	159	0%	137	39.4%	9	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rad21_Rec8_N
MED30	90390	genome.wustl.edu	37	8	118540964	118540964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080651.2	+1	validated	p.Q84H	0.918	127	0%	151	47%	7	28.5%	possibly_damaging(0.913)	deleterious(0.03)	deleterious(0.729)	NULL
SAMD12	401474	genome.wustl.edu	37	8	119391750	119391750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207506.2	-1	validated	p.K171R	0.000	141	0%	107	40.2%	0	-	benign(0.301)	deleterious(0)	deleterious(0.537)	NULL
ENPP2	5168	genome.wustl.edu	37	8	120595979	120595979	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.I559	0.978	196	0%	120	46.7%	0	-	-	-	-	superfamily_Alkaline phosphatase-like
ATAD2	29028	genome.wustl.edu	37	8	124358425	124358425	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.P811	0.998	78	0%	55	49.1%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SQLE	6713	genome.wustl.edu	37	8	126021290	126021290	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003129.3	+1	reviewed	p.V300	0.222	197	0%	179	41.3%	6	66.6%	-	-	-	HMMPfam_SE,superfamily_SSF51905
MYC	4609	genome.wustl.edu	37	8	128752945	128752945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002467.4	+1	reviewed	p.V369D	1.000	35	0%	103	49.5%	16	43.7%	benign(0)	tolerated(1)	-	NULL
EFR3A	23167	genome.wustl.edu	37	8	132952757	132952757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015137.3	+1	validated	p.C8R	1.000	121	0%	107	46.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTK2	5747	genome.wustl.edu	37	8	141669667	141669667	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005607.3	-1	reviewed	p.Q1041H	0.946	46	0%	100	48%	33	39.3%	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_Focal_AT,superfamily_Focal_AT
EPPK1	83481	genome.wustl.edu	37	8	144940264	144940264	+	Missense_Mutation	SNP	G	G	T	rs141324367		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.F2386L	1.000	35	0%	211	31.3%	8	50%	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	HMMSmart_SM00250,superfamily_Plakin repeat
PLEC	5339	genome.wustl.edu	37	8	144996955	144996955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.E2518G	1.000	4	0.000	8	0.500	23	30.4%	probably_damaging(0.972)	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	145004570	145004570	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.C950	0.996	4	0.000	22	0.455	6	33.3%	-	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
SHARPIN	81858	genome.wustl.edu	37	8	145153828	145153828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030974.3	-1	validated	p.T373P	1.000	12	0%	87	28.7%	314	52.8%	probably_damaging(0.999)	tolerated(0.23)	deleterious(0.532)	HMMPfam_zf-RanBP,HMMSmart_SM00547,superfamily_NZF domain
FOXD4	2298	genome.wustl.edu	37	9	118107	118107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207305.3	-1	validated	p.R5G	0.976	21	0%	104	31.7%	2	0%	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
DOCK8	81704	genome.wustl.edu	37	9	377046	377046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203447.3	+1	reviewed	p.V691M	1.000	8	0.000	13	0.462	2	0%	possibly_damaging(0.768)	tolerated(0.1)	deleterious(0.571)	NULL
RFX3	5991	genome.wustl.edu	37	9	3247939	3247939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002919.2	-1	reviewed	p.M687I	0.002	91	0%	49	36.7%	0	-	benign(0)	-	-	NULL
CD274	29126	genome.wustl.edu	37	9	5463113	5463113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014143.3	+1	validated	p.V225A	0.858	111	0%	87	37.9%	0	-	probably_damaging(0.969)	deleterious(0.05)	deleterious(0.757)	HMMSmart_SM00409,superfamily_Immunoglobulin
ERMP1	79956	genome.wustl.edu	37	9	5801252	5801252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024896.2	-1	validated	p.L664R	1.000	231	0%	147	40.8%	2	50%	possibly_damaging(0.846)	deleterious(0.03)	deleterious(0.690)	NULL
LOC645969	645969	genome.wustl.edu	37	9	6278942	6278942	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342907.1	+1	model	p.N66	1.000	297	0%	384	47.1%	0	-	-	-	-	HMMPfam_SelT
UHRF2	115426	genome.wustl.edu	37	9	6420974	6420974	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152896.1	+1	reviewed	p.L72	1.000	101	0%	166	42.8%	2	100%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
PTPRD	5789	genome.wustl.edu	37	9	8341877	8341877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.M1588T	1.000	252	0%	141	37.6%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTPRD	5789	genome.wustl.edu	37	9	8521393	8521393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.M282T	1.000	101	0%	52	42.3%	0	-	possibly_damaging(0.513)	tolerated(0.16)	neutral(0.232)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
LOC138864	138864	genome.wustl.edu	37	9	14069295	14069295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342892.1	+1	model	p.M122T	0.981	71	0%	32	46.9%	0	-	-	-	-	HMMPfam_Mt_ATP-synt_D
FREM1	158326	genome.wustl.edu	37	9	14824037	14824037	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.R719W	0.994	74	0%	47	44.7%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
PSIP1	11168	genome.wustl.edu	37	9	15486003	15486003	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128217.1	-1	validated	e5+1	1.000	237	0%	180	42.8%	11	100%	-	-	-	-
KIAA1797	54914	genome.wustl.edu	37	9	20764956	20764956	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.R195*	0.161	151	0%	72	51.4%	2	0%	-	-	-	NULL
IFNA8	3445	genome.wustl.edu	37	9	21409744	21409744	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002170.3	+1	validated	p.*190L	0.000	89	0%	87	36.8%	0	-	-	-	-	NULL
TOPORS	10210	genome.wustl.edu	37	9	32542291	32542291	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005802.3	-1	reviewed	p.F744	0.999	243	0%	184	43.5%	0	-	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630348	32630348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.L1744I	0.990	130	0%	196	44.9%	0	-	probably_damaging(0.994)	tolerated(0.46)	neutral(0.464)	NULL
BAG1	573	genome.wustl.edu	37	9	33255272	33255272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004323.5	-1	reviewed	p.N328S	0.984	19	0%	45	44.4%	177	37.8%	benign(0.013)	tolerated(0.89)	neutral(0.001)	superfamily_BAG domain
ANKRD18B	441459	genome.wustl.edu	37	9	33567210	33567210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.M1017T	0.002	18	0%	10	50%	0	-	possibly_damaging(0.794)	tolerated(0.05)	deleterious(0.643)	NULL
UNC13B	10497	genome.wustl.edu	37	9	35403533	35403533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006377.3	+1	reviewed	p.R1476K	1.000	28	0%	44	34.1%	11	63.6%	possibly_damaging(0.906)	tolerated(0.08)	deleterious(0.659)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TLN1	7094	genome.wustl.edu	37	9	35704812	35704812	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006289.3	-1	reviewed	p.I1912L	1.000	15	0%	92	46.7%	18	55.5%	benign(0.017)	tolerated(0.15)	neutral(0.241)	HMMPfam_VBS
GBA2	57704	genome.wustl.edu	37	9	35738217	35738217	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378088	-1	known	p.G11	0.000	58	0%	174	41.4%	23	56.5%	-	-	-	NULL
GNE	10020	genome.wustl.edu	37	9	36219883	36219883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128227.1	-1	reviewed	p.Y621D	1.000	36	0%	103	49.5%	1	0%	possibly_damaging(0.807)	deleterious(0)	deleterious(0.748)	HMMPfam_ROK,superfamily_SSF53067
GNE	10020	genome.wustl.edu	37	9	36223467	36223467	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128227.1	-1	reviewed	p.N469	1.000	170	0%	129	16.3%	2	0%	-	-	-	HMMPfam_ROK,superfamily_SSF53067
RNF38	152006	genome.wustl.edu	37	9	36357786	36357786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022781.4	-1	reviewed	p.S242G	1.000	17	0%	48	45.8%	5	40%	possibly_damaging(0.706)	deleterious(0.01)	deleterious(0.659)	NULL
DCAF10	79269	genome.wustl.edu	37	9	37860048	37860048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024345.3	+1	validated	p.V390A	1.000	57	0%	56	42.9%	3	33.3%	benign(0.001)	tolerated(0.14)	neutral(0.249)	superfamily_WD40 repeat-like
MAMDC2	256691	genome.wustl.edu	37	9	72723296	72723296	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153267.4	+1	validated	p.F106	0.303	117	0%	42	52.4%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
TMC1	117531	genome.wustl.edu	37	9	75406926	75406926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138691.2	+1	reviewed	p.L450P	1.000	267	0%	132	43.2%	0	-	possibly_damaging(0.901)	tolerated(0.08)	deleterious(0.657)	NULL
TRPM6	140803	genome.wustl.edu	37	9	77455036	77455036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.T150A	0.932	115	0.9%	153	41.8%	0	-	unknown(0)	tolerated(0.46)	-	NULL
C9orf41	138199	genome.wustl.edu	37	9	77598705	77598705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152420.1	-1	predicted	p.F403S	1.000	139	0%	78	47.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_N2227,superfamily_SSF53335
VPS13A	23230	genome.wustl.edu	37	9	80018161	80018161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.N3067D	1.000	260	0%	116	50%	4	50%	benign(0)	deleterious(0)	neutral(0.445)	NULL
KIF27	55582	genome.wustl.edu	37	9	86506303	86506303	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.D572	0.998	194	0%	111	51.4%	0	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90535941	90535941	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.A373	0.011	55	0%	156	44.2%	0	-	-	-	-	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90538261	90538261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.R1147W	0.000	88	0%	219	45.2%	0	-	-	-	-	NULL
NFIL3	4783	genome.wustl.edu	37	9	94171799	94171799	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005384.2	-1	validated	p.K406	0.926	102	0%	244	45.5%	11	45.4%	-	-	-	HMMPfam_Vert_IL3-reg_TF
CENPP	401541	genome.wustl.edu	37	9	95374861	95374862	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012267.1	+1	validated	p.L236fs	0.956:0.228	-	-	-	-	-	-	-	-	-	NULL
PHF2	5253	genome.wustl.edu	37	9	96437249	96437249	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005392.3	+1	reviewed	p.F889	1.000	31	0%	92	43.5%	9	55.5%	-	-	-	NULL
FBP2	8789	genome.wustl.edu	37	9	97346904	97346904	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003837.2	-1	reviewed	p.I127	0.389	67	0%	143	36.4%	0	-	-	-	-	HMMPfam_FBPase,superfamily_SSF56655
C9orf3	84909	genome.wustl.edu	37	9	97535336	97535336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032823.3	+1	provisional	p.C284R	1.000	59	0%	95	50.5%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	superfamily_SSF63737
C9orf102	375748	genome.wustl.edu	37	9	98684692	98684692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010895.2	+1	validated	p.K480E	0.995	64	0%	71	45.1%	0	-	possibly_damaging(0.541)	tolerated(0.76)	neutral(0.184)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100082479	100082479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020893.1	+1	predicted	p.K567R	0.903	75	0%	92	43.5%	4	50%	unknown(0)	deleterious(0.03)	-	NULL
NCBP1	4686	genome.wustl.edu	37	9	100403116	100403116	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002486.4	+1	reviewed	p.N25	0.999	109	0%	121	45.5%	0	-	-	-	-	NULL
NR4A3	8013	genome.wustl.edu	37	9	102606981	102606981	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173200.1	+1	reviewed	p.Q446	0.997	68	0%	59	45.8%	0	-	-	-	-	superfamily_Str_ncl_receptor
TEX10	54881	genome.wustl.edu	37	9	103109156	103109156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017746.3	-1	validated	p.L238S	1.000	96	0%	156	41.7%	0	-	possibly_damaging(0.703)	deleterious(0.01)	deleterious(0.658)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767096	105767096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001340.3	+1	reviewed	p.K100N	0.020	98	0%	80	38.8%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ABCA1	19	genome.wustl.edu	37	9	107646735	107646735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.G92E	1.000	83	0%	80	53.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KLF4	9314	genome.wustl.edu	37	9	110249589	110249589	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004235.4	-1	validated	p.P362	0.948	27	0%	142	47.2%	1	100%	-	-	-	NULL
EPB41L4B	54566	genome.wustl.edu	37	9	112013779	112013779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019114.3	-1	validated	p.V431A	0.998	58	0%	72	9.7%	4	0%	benign(0.104)	tolerated(0.34)	neutral(0.031)	NULL
MUSK	4593	genome.wustl.edu	37	9	113547199	113547199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005592.3	+1	reviewed	p.I497V	0.999	256	0%	296	45.6%	0	-	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	NULL
MUSK	4593	genome.wustl.edu	37	9	113562624	113562624	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005592.3	+1	reviewed	p.E656*	1.000	29	0%	76	47.4%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PTGR1	22949	genome.wustl.edu	37	9	114348403	114348403	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012212.3	-1	reviewed	p.I84	0.104	51	0%	98	43.9%	36	91.6%	-	-	-	superfamily_GroES_like
ENSG00000221734	0	genome.wustl.edu	37	9	117554487	117554487	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408807	+1	novel	NULL	0.001	104	0%	31	48.4%	0	-	-	-	-	-
TNC	3371	genome.wustl.edu	37	9	117849490	117849490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.C174G	1.000	11	0%	28	39.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_EGF_1,PatternScan_EGF_2
FBXW2	26190	genome.wustl.edu	37	9	123526990	123526990	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012164.3	-1	reviewed	p.P404	0.989	32	0%	73	49.3%	34	47%	-	-	-	superfamily_WD40 repeat-like
PSMD5	5711	genome.wustl.edu	37	9	123586876	123586876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.F301S	1.000	97	0%	60	38.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB
CNTRL	11064	genome.wustl.edu	37	9	123927284	123927284	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.L1829F	0.006	86	0%	54	9.3%	5	0%	possibly_damaging(0.775)	tolerated(0.14)	deleterious(0.538)	superfamily_tRNA-binding arm
OR1Q1	158131	genome.wustl.edu	37	9	125377621	125377621	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012364.1	+1	provisional	p.E202G	0.714	58	0%	79	44.3%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	HMMPfam_7tm_1,superfamily_SSF81321
RABGAP1	23637	genome.wustl.edu	37	9	125746950	125746950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012197.3	+1	validated	p.G113R	1.000	42	2.4%	41	39%	3	66.6%	probably_damaging(0.991)	tolerated(0.79)	neutral(0.445)	NULL
DENND1A	57706	genome.wustl.edu	37	9	126143797	126143797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020946.1	-1	validated	p.K982E	1.000	7	0.000	75	0.440	6	16.6%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
GPR144	347088	genome.wustl.edu	37	9	127216355	127216355	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334810	+1	known	p.F353V	0.977	9	0.000	15	0.267	0	-	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	NULL
GOLGA1	2800	genome.wustl.edu	37	9	127644802	127644802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002077.3	-1	reviewed	p.L651R	1.000	12	0%	41	36.6%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GAPVD1	26130	genome.wustl.edu	37	9	128104530	128104530	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015635.2	+1	validated	p.E1027*	1.000	118	0%	101	43.6%	0	-	-	-	-	NULL
STXBP1	6812	genome.wustl.edu	37	9	130438143	130438143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003165.3	+1	reviewed	p.V391I	1.000	54	0%	110	46.4%	1	100%	possibly_damaging(0.71)	tolerated(0.06)	deleterious(0.579)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
ENG	2022	genome.wustl.edu	37	9	130581107	130581107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114753.1	-1	reviewed	p.K439R	0.001	38	0%	108	38%	68	17.6%	possibly_damaging(0.81)	tolerated(0.2)	neutral(0.354)	HMMPfam_Zona_pellucida
SLC25A25	114789	genome.wustl.edu	37	9	130865958	130865958	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006641.1	+1	validated	e5-2	1.000	45	0%	98	52%	1	100%	-	-	-	-
FAM73B	84895	genome.wustl.edu	37	9	131823625	131823625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032809.2	+1	predicted	p.R337K	1.000	9	0.000	47	0.447	6	33.3%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_DUF2217
TTF1	7270	genome.wustl.edu	37	9	135275576	135275576	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007344.2	-1	validated	p.A479	0.004	42	0%	123	35%	0	-	-	-	-	NULL
CEL	1056	genome.wustl.edu	37	9	135942540	135942540	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001807.3	+1	reviewed	p.T284	0.087	18	0%	117	29.9%	7	42.8%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
ADAMTS13	11093	genome.wustl.edu	37	9	136321196	136321196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.C1192R	0.989	6	0.000	41	0.415	9	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Spermadhesin CUB domain
WDR5	11091	genome.wustl.edu	37	9	137021645	137021645	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017588.2	+1	reviewed	p.S278	0.025	100	0%	261	39.5%	11	54.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
COL5A1	1289	genome.wustl.edu	37	9	137620561	137620561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.P278T	1.000	26	0%	88	26.1%	0	-	unknown(0)	tolerated(0.8)	-	NULL
COL5A1	1289	genome.wustl.edu	37	9	137717703	137717703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.T1674A	1.000	23	0%	83	44.6%	6	0%	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_COLFI
CAMSAP1	157922	genome.wustl.edu	37	9	138774830	138774830	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015447.3	-1	validated	p.S85	0.931	26	0%	69	47.8%	2	100%	-	-	-	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139272727	139272727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003086.2	-1	validated	p.I1184M	0.000	9	0.000	25	0.320	22	54.5%	benign(0.354)	deleterious(0)	deleterious(0.556)	NULL
PMPCA	23203	genome.wustl.edu	37	9	139316428	139316428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015160.1	+1	provisional	p.R470C	1.000	5	0.000	30	0.467	52	38.4%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	superfamily_LuxS/MPP-like metallohydrolase
FBXW5	54461	genome.wustl.edu	37	9	139836644	139836644	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018998.2	-1	reviewed	p.Q317P	0.000	19	0%	92	47.8%	78	39.7%	benign(0)	tolerated(0.27)	neutral(0.034)	superfamily_WD40 repeat-like
NDOR1	27158	genome.wustl.edu	37	9	140110730	140110730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144027.1	+1	reviewed	p.P511L	1.000	13	0%	45	42.2%	18	33.3%	benign(0.004)	-	-	NULL
ENTPD8	377841	genome.wustl.edu	37	9	140329717	140329717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033113.1	-1	validated	p.L412P	0.395	5	0.000	43	0.465	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
EHMT1	79813	genome.wustl.edu	37	9	140611199	140611199	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024757.4	+1	reviewed	p.L63P	0.001	25	0%	76	50%	8	25%	-	-	-	NULL
IDI2-AS1	55853	genome.wustl.edu	37	10	1089833	1089833	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024628.1	+1	validated	NULL	0.000	73	0%	108	10.2%	3	0%	-	-	-	-
FAM208B	54906	genome.wustl.edu	37	10	5789920	5789920	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.L1512	0.000	49	0%	54	50%	5	100%	-	-	-	NULL
SFMBT2	57713	genome.wustl.edu	37	10	7285633	7285633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029880.1	-1	provisional	p.D336G	0.996	35	0%	39	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
FAM107B	83641	genome.wustl.edu	37	10	14572385	14572385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031453.2	-1	predicted	p.K200I	1.000	137	0%	123	46.3%	3	0%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMPfam_DUF1151
PTER	9317	genome.wustl.edu	37	10	16526598	16526598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001484.1	+1	validated	p.Q72R	0.025	75	0%	52	38.5%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	HMMPfam_PTE,superfamily_Metallo-dependent hydrolases
PTPLA	9200	genome.wustl.edu	37	10	17641288	17641288	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014241.3	-1	reviewed	e5+1	1.000	57	0%	65	33.8%	0	-	-	-	-	-
NEBL	10529	genome.wustl.edu	37	10	21139352	21139352	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006393.2	-1	reviewed	p.S363*	1.000	316	0%	170	38.8%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
SPAG6	9576	genome.wustl.edu	37	10	22653836	22653836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012443.2	+1	reviewed	p.Q59R	1.000	59	0%	66	39.4%	0	-	benign(0.011)	deleterious(0.03)	neutral(0.365)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PTF1A	256297	genome.wustl.edu	37	10	23482774	23482774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178161.2	+1	reviewed	p.L309P	1.000	54	0%	184	37%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24762554	24762554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.L415P	0.015	18	0%	19	52.6%	2	100%	benign(0.039)	tolerated(0.08)	neutral(0.302)	NULL
PRTFDC1	56952	genome.wustl.edu	37	10	25226158	25226158	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020200.5	-1	provisional	p.R98	0.009	102	0%	91	46.2%	6	16.6%	-	-	-	HMMPfam_Pribosyltran,superfamily_PRTase-like
MYO3A	53904	genome.wustl.edu	37	10	26286128	26286128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.D150G	1.000	155	0%	56	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
MASTL	84930	genome.wustl.edu	37	10	27459916	27459916	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.T676	0.953	124	0%	84	31%	6	0%	-	-	-	superfamily_Kinase_like
MASTL	84930	genome.wustl.edu	37	10	27459939	27459939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.S684L	0.995	117	0%	70	51.4%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like
PTCHD3	374308	genome.wustl.edu	37	10	27687530	27687530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.D666G	0.000	183	0%	97	50.5%	0	-	benign(0.311)	deleterious(0.04)	neutral(0.446)	HMMPfam_Patched
LYZL1	84569	genome.wustl.edu	37	10	29580824	29580824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032517.4	+1	validated	p.I56V	0.343	35	2.9%	64	29.7%	0	-	benign(0)	tolerated(0.79)	neutral(0.001)	NULL
KIAA1462	57608	genome.wustl.edu	37	10	30318028	30318028	+	Missense_Mutation	SNP	G	G	A	rs182760536	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020848.2	-1	validated	p.P350L	0.993	45	0%	72	50%	0	-	benign(0.095)	deleterious(0)	neutral(0.452)	NULL
KIF5B	3799	genome.wustl.edu	37	10	32311825	32311825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004521.2	-1	validated	p.M622T	1.000	296	0%	269	44.6%	6	33.3%	benign(0.011)	tolerated(0.15)	neutral(0.241)	NULL
LOC646360	646360	genome.wustl.edu	37	10	37626619	37626619	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078419.1	+1	model	NULL	1.000	273	0%	157	44.6%	0	-	-	-	-	-
ZNF32	7580	genome.wustl.edu	37	10	44139506	44139506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005368.1	-1	validated	p.T272A	1.000	21	0%	84	44%	104	39.4%	unknown(0)	deleterious(0)	-	NULL
C10orf10	11067	genome.wustl.edu	37	10	45472880	45472880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007021.3	-1	reviewed	p.R200I	0.004	4	0.000	35	0.457	5	0%	probably_damaging(0.96)	tolerated(0.11)	deleterious(0.675)	NULL
FAM170B	170370	genome.wustl.edu	37	10	50340213	50340213	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311787	-1	known	p.D99	0.011	13	0%	36	58.3%	0	-	-	-	-	NULL
FAM21A	387680	genome.wustl.edu	37	10	51889703	51889703	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005751.1	+1	validated	p.D1204	0.997	252	0%	150	39.3%	12	41.6%	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	56089359	56089359	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.A239	0.824	201	0%	55	54.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ANK3	288	genome.wustl.edu	37	10	61833754	61833754	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.E2295	0.983	120	0%	80	53.7%	0	-	-	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	61835126	61835126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.K1838R	1.000	75	0%	60	43.3%	0	-	possibly_damaging(0.892)	-	-	NULL
ANK3	288	genome.wustl.edu	37	10	62038908	62038908	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	e3-2	1.000	47	0%	28	39.3%	0	-	-	-	-	-
ARID5B	84159	genome.wustl.edu	37	10	63810764	63810764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456911	+1	known	p.R284L	0.004	89	0%	34	64.7%	0	-	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63851453	63851453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.M744R	0.763	74	0%	66	40.9%	3	33.3%	benign(0.005)	deleterious(0.02)	neutral(0.383)	NULL
ARID5B	84159	genome.wustl.edu	37	10	63852147	63852147	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.S975	0.016	17	0%	35	48.6%	2	0%	-	-	-	NULL
RTKN2	219790	genome.wustl.edu	37	10	63957867	63957867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145307.2	-1	provisional	p.K544E	0.989	252	0%	171	45.6%	0	-	benign(0.309)	deleterious(0.01)	deleterious(0.502)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64973314	64973314	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032776.1	-1	validated	p.H871	1.000	92	0%	95	44.2%	1	0%	-	-	-	NULL
SIRT1	23411	genome.wustl.edu	37	10	69669102	69669102	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142498.1	+1	reviewed	p.E125	1.000	105	0%	87	46%	4	50%	-	-	-	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain
DNA2	1763	genome.wustl.edu	37	10	70209804	70209804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080449.1	-1	provisional	p.S393Y	1.000	200	0%	142	48.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TET1	80312	genome.wustl.edu	37	10	70405569	70405569	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.L1028H	0.238	113	0%	74	51.4%	0	-	benign(0.267)	deleterious(0.01)	neutral(0.434)	NULL
DDX50	79009	genome.wustl.edu	37	10	70706331	70706331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024045.1	+1	reviewed	p.R720L	1.000	24	0%	45	40%	95	46.3%	unknown(0)	deleterious(0.04)	-	NULL
PPA1	5464	genome.wustl.edu	37	10	71969379	71969379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021129.3	-1	reviewed	p.R192W	1.000	163	0%	162	49.4%	127	39.3%	benign(0.006)	tolerated(0.2)	neutral(0.049)	HMMPfam_Pyrophosphatase,superfamily_Pyrophosphatase
KIAA1274	27143	genome.wustl.edu	37	10	72294269	72294269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014431.2	+1	validated	p.M371V	1.000	39	0%	94	38.3%	4	25%	benign(0)	tolerated(1)	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73455245	73455245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.L787P	1.000	29	0%	91	39.6%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Cadherin,superfamily_Cadherin-like
VCL	7414	genome.wustl.edu	37	10	75843245	75843245	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014000.2	+1	reviewed	p.T332	0.995	46	0%	39	38.5%	2	50%	-	-	-	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
SFTPD	6441	genome.wustl.edu	37	10	81706323	81706323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003019.4	-1	validated	p.M31I	0.000	38	0%	55	50.9%	0	-	benign(0)	-	-	NULL
FAM190B	54462	genome.wustl.edu	37	10	86131069	86131069	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018999.2	+1	validated	p.N87K	0.672	84	0%	52	38.5%	0	-	benign(0.006)	tolerated(0.93)	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R233*	0.984	108	0%	83	55.4%	18	11.1%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
IFIT3	3437	genome.wustl.edu	37	10	91099718	91099718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031683.2	+1	validated	p.K436E	0.240	54	0%	40	42.5%	14	50%	benign(0)	tolerated(1)	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
HECTD2	143279	genome.wustl.edu	37	10	93242744	93242744	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182765.3	+1	validated	p.T244	1.000	49	0%	91	51.6%	2	0%	-	-	-	NULL
BTAF1	9044	genome.wustl.edu	37	10	93740313	93740313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.K585E	1.000	179	0%	172	45.9%	3	0%	benign(0.01)	tolerated(0.63)	neutral(0.004)	superfamily_ARM repeat
MYOF	26509	genome.wustl.edu	37	10	95076507	95076507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.W1888R	1.000	111	0%	120	38.3%	39	51.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
MYOF	26509	genome.wustl.edu	37	10	95163954	95163954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013451.3	-1	reviewed	p.M251T	0.984	81	0%	41	22%	1	100%	benign(0.002)	tolerated(0.39)	neutral(0.016)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLCE1	51196	genome.wustl.edu	37	10	96005707	96005707	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.I809L	0.990	15	0%	27	33.3%	0	-	benign(0.019)	deleterious(0.04)	neutral(0.350)	HMMSmart_SM00147,superfamily_Ras GEF
CYP2C18	1562	genome.wustl.edu	37	10	96493102	96493102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000772.2	+1	reviewed	p.E400*	0.540	212	0%	130	47.7%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CYP2C9	1559	genome.wustl.edu	37	10	96702070	96702070	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000771.3	+1	reviewed	p.C151	0.790	123	0%	146	40.4%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
C10orf12	26148	genome.wustl.edu	37	10	98743747	98743747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015652.2	+1	predicted	p.N867S	0.915	58	0%	52	40.4%	1	0%	benign(0.425)	tolerated(0.09)	neutral(0.434)	NULL
C10orf28	27291	genome.wustl.edu	37	10	99968339	99968339	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014472.4	+1	validated	p.T156	0.018	107	0%	47	36.2%	0	-	-	-	-	NULL
ABCC2	1244	genome.wustl.edu	37	10	101603601	101603601	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.E1263*	1.000	123	0%	339	41.6%	0	-	-	-	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
HIF1AN	55662	genome.wustl.edu	37	10	102296357	102296357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017902.2	+1	validated	p.M123V	1.000	76	0%	116	50.9%	1	0%	benign(0)	tolerated(0.66)	neutral(0.003)	superfamily_SSF51197
SFXN3	81855	genome.wustl.edu	37	10	102795329	102795329	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030971.3	+1	validated	p.H83	0.989	12	0%	55	45.5%	4	0%	-	-	-	HMMPfam_Mtc
HPS6	79803	genome.wustl.edu	37	10	103826899	103826899	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024747.4	+1	reviewed	p.E556	0.026	4	0.000	29	0.517	18	50%	-	-	-	NULL
PSD	5662	genome.wustl.edu	37	10	104164680	104164680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002779.3	-1	provisional	p.W844R	1.000	5	0.000	49	0.571	6	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CYP17A1	1586	genome.wustl.edu	37	10	104597099	104597099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000102.3	-1	reviewed	p.L7P	0.006	25	0%	38	26.3%	0	-	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	NULL
SLK	9748	genome.wustl.edu	37	10	105762303	105762303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014720.2	+1	provisional	p.M456T	0.000	109	0%	67	35.8%	0	-	benign(0.039)	tolerated(0.43)	neutral(0.015)	superfamily_Protein kinase-like (PK-like)
WDR96	80217	genome.wustl.edu	37	10	105903311	105903311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025145.5	-1	provisional	p.A1344D	0.000	117	0%	82	35.4%	1	100%	benign(0.017)	tolerated(0.7)	neutral(0.003)	superfamily_WD40 repeat-like
TCF7L2	6934	genome.wustl.edu	37	10	114911632	114911632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030756.4	+1	reviewed	p.L361F	1.000	58	0%	48	47.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
TDRD1	56165	genome.wustl.edu	37	10	115962035	115962035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198795.1	+1	reviewed	p.K225T	0.967	414	0%	122	44.3%	0	-	probably_damaging(0.977)	tolerated(0.5)	neutral(0.429)	NULL
AFAP1L2	84632	genome.wustl.edu	37	10	116056818	116056818	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001936.1	-1	validated	p.P783	0.028	67	0%	164	44.5%	3	33.3%	-	-	-	NULL
ABLIM1	3983	genome.wustl.edu	37	10	116361699	116361699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002313.5	-1	reviewed	p.H89R	1.000	37	0%	51	47.1%	0	-	benign(0.397)	tolerated(0.29)	neutral(0.157)	superfamily_Glucocorticoid receptor-like (DNA-binding domain)
HSPA12A	259217	genome.wustl.edu	37	10	118435948	118435948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025015.2	-1	validated	p.L451R	1.000	34	0%	104	28.8%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53067
KCNK18	338567	genome.wustl.edu	37	10	118969619	118969619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181840.1	+1	provisional	p.T322A	1.000	295	0%	284	47.5%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Ion_trans_2,superfamily_SSF81324
DMBT1	1755	genome.wustl.edu	37	10	124392751	124392751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.F2019L	0.406	40	0%	113	53.1%	4	50%	probably_damaging(0.987)	tolerated(0.09)	deleterious(0.733)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
C10orf137	26098	genome.wustl.edu	37	10	127429069	127429069	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015608.2	+1	validated	p.S639	0.999	110	0%	90	46.7%	5	60%	-	-	-	NULL
BCCIP	56647	genome.wustl.edu	37	10	127516130	127516130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016567.3	+1	reviewed	p.F82V	1.000	181	0%	193	42%	13	61.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
MKI67	4288	genome.wustl.edu	37	10	129901658	129901658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.T2816A	0.000	193	0%	198	45.5%	0	-	possibly_damaging(0.936)	tolerated(0.1)	deleterious(0.668)	NULL
STK32C	282974	genome.wustl.edu	37	10	134038821	134038821	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173575.2	-1	reviewed	p.S264	0.992	13	0%	64	43.8%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NKX6-2	84504	genome.wustl.edu	37	10	134598513	134598513	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177400.2	-1	validated	p.D247	1.000	17	0%	110	36.4%	0	-	-	-	-	NULL
TTC40	54777	genome.wustl.edu	37	10	134648919	134648919	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368586	-1	known	p.R2211	0.863	5	0.000	22	0.591	0	-	-	-	-	NULL
GPR123	84435	genome.wustl.edu	37	10	134895364	134895364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392609	+1	known	p.S157F	0.000	11	0%	55	52.7%	0	-	unknown(0)	-	-	NULL
KNDC1	85442	genome.wustl.edu	37	10	135020767	135020767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152643.6	+1	validated	p.N1236D	1.000	5	0.000	26	0.462	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	superfamily_Ras GEF
ECHS1	1892	genome.wustl.edu	37	10	135176419	135176419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004092.3	-1	reviewed	p.M276V	1.000	92	0%	237	36.7%	362	50.5%	possibly_damaging(0.914)	deleterious(0)	deleterious(0.810)	superfamily_SSF52096
B4GALNT4	338707	genome.wustl.edu	37	11	373207	373207	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178537.4	+1	validated	p.S184	0.055	16	0%	86	40.7%	7	71.4%	-	-	-	HMMPfam_PA14,HMMSmart_PA14
PKP3	11187	genome.wustl.edu	37	11	404048	404048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007183.2	+1	reviewed	p.L728P	1.000	10	0%	44	36.4%	175	30.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
KRTAP5-6	440023	genome.wustl.edu	37	11	1718669	1718669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012416.1	+1	validated	p.G65D	0.232	23	0%	132	49.2%	0	-	unknown(0)	tolerated(0.13)	-	PatternScan_VWFC_1
CHRNA10	57053	genome.wustl.edu	37	11	3691139	3691139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020402.2	-1	provisional	p.K32E	1.000	35	0%	150	42%	0	-	possibly_damaging(0.875)	deleterious(0.02)	deleterious(0.723)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
NUP98	4928	genome.wustl.edu	37	11	3726556	3726556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016320.4	-1	reviewed	p.E986K	1.000	157	0%	90	41.1%	3	66.6%	benign(0.05)	deleterious(0)	neutral(0.448)	NULL
OR51F2	119694	genome.wustl.edu	37	11	4843534	4843534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004753.1	+1	provisional	p.S307G	0.998	118	0%	103	34%	0	-	possibly_damaging(0.631)	tolerated(0.32)	neutral(0.244)	superfamily_SSF81321
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5626774	5626774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003819.2	+1	reviewed	p.G271R	0.998	27	0%	71	49.3%	0	-	probably_damaging(1)	tolerated(0.19)	deleterious(0.549)	NULL
TRIM22	10346	genome.wustl.edu	37	11	5730452	5730452	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006074.3	+1	reviewed	p.W357*	1.000	162	0%	116	46.6%	36	30.5%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
OR56A5	390084	genome.wustl.edu	37	11	5989423	5989423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343047.1	-1	model	p.F101S	0.997	57	0%	121	45.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SMPD1	6609	genome.wustl.edu	37	11	6414846	6414846	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000543.3	+1	reviewed	e4-1	1.000	36	0%	142	44.4%	1	100%	-	-	-	-
TPP1	1200	genome.wustl.edu	37	11	6638262	6638262	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.L211	0.996	38	0%	199	51.3%	4	75%	-	-	-	superfamily_Subtilisin-like
TPP1	1200	genome.wustl.edu	37	11	6640116	6640116	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.R40	0.940	19	0%	58	43.1%	1	0%	-	-	-	superfamily_Protease propeptides/inhibitors,HMMPfam_Pro-kuma_activ
OR2D2	120776	genome.wustl.edu	37	11	6913501	6913501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003700.1	-1	provisional	p.I77M	0.000	70	0%	66	42.4%	0	-	possibly_damaging(0.753)	tolerated(0.1)	deleterious(0.563)	HMMPfam_7tm_1,superfamily_SSF81321
AKIP1	56672	genome.wustl.edu	37	11	8938869	8938869	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020642.3	+1	validated	p.G148	0.085	85	0%	95	37.9%	22	27.2%	-	-	-	NULL
DENND5A	23258	genome.wustl.edu	37	11	9225325	9225325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015213.2	-1	validated	p.N277K	0.990	28	0%	38	55.3%	0	-	benign(0.01)	tolerated(0.41)	neutral(0.015)	HMMPfam_DENN,HMMSmart_SM00799
IPO7	10527	genome.wustl.edu	37	11	9457907	9457907	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006391.2	+1	reviewed	p.I754	1.000	83	0%	148	50%	15	60%	-	-	-	superfamily_ARM-type_fold
IPO7	10527	genome.wustl.edu	37	11	9459506	9459506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006391.2	+1	reviewed	p.V825A	1.000	213	0%	134	44.8%	8	50%	benign(0.001)	tolerated(0.39)	neutral(0.016)	superfamily_ARM-type_fold
SBF2	81846	genome.wustl.edu	37	11	9810727	9810727	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.R1621	1.000	37	0%	60	36.7%	6	50%	-	-	-	NULL
GALNTL4	374378	genome.wustl.edu	37	11	11292835	11292835	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.G560	1.000	12	0%	25	40%	6	16.6%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins
MICAL2	9645	genome.wustl.edu	37	11	12244956	12244956	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014632.2	+1	provisional	e10-2	0.998	33	0%	65	46.2%	0	-	-	-	-	-
PIK3C2A	5286	genome.wustl.edu	37	11	17170313	17170313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.I450T	0.990	134	0%	77	53.2%	3	100%	benign(0.052)	deleterious(0.01)	neutral(0.409)	HMMPfam_PI3K_rbd,HMMSmart_SM00144,superfamily_Ubiquitin-like
GTF2H1	2965	genome.wustl.edu	37	11	18362806	18362806	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142307.1	+1	validated	e5-2	1.000	72	0%	92	50%	0	-	-	-	-	-
LDHAL6A	160287	genome.wustl.edu	37	11	18499244	18499244	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144071.1	+1	validated	p.I263S	1.000	216	0%	153	48.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C
NAV2	89797	genome.wustl.edu	37	11	19955752	19955752	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182964.5	+1	validated	p.S654	0.999	25	0%	51	49%	2	50%	-	-	-	NULL
LGR4	55366	genome.wustl.edu	37	11	27393235	27393235	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018490.2	-1	validated	p.D502	0.000	182	0%	136	40.4%	1	100%	-	-	-	NULL
LIN7C	55327	genome.wustl.edu	37	11	27520226	27520226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018362.3	-1	validated	p.M188I	1.000	277	0%	245	38%	1	0%	benign(0.018)	tolerated(0.17)	neutral(0.059)	superfamily_PDZ domain-like
DCDC1	341019	genome.wustl.edu	37	11	31327912	31327912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181807.2	-1	validated	p.K153R	1.000	136	0%	65	41.5%	0	-	possibly_damaging(0.494)	tolerated(0.26)	neutral(0.199)	NULL
ELP4	26610	genome.wustl.edu	37	11	31625362	31625362	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019040.3	+1	reviewed	p.S187	1.000	146	0%	87	48.3%	4	50%	-	-	-	HMMPfam_PAXNEB
CAPRIN1	4076	genome.wustl.edu	37	11	34118181	34118181	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005898.4	+1	validated	p.L621	1.000	21	0%	76	48.7%	42	33.3%	-	-	-	NULL
ELF5	2001	genome.wustl.edu	37	11	34504029	34504029	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198381.1	-1	reviewed	p.L152V	1.000	150	0%	87	47.1%	0	-	benign(0.011)	tolerated(0.67)	neutral(0.003)	NULL
RAG2	5897	genome.wustl.edu	37	11	36614195	36614195	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.K508	0.882	143	0%	128	37.5%	0	-	-	-	-	HMMPfam_RAG2
ALX4	60529	genome.wustl.edu	37	11	44297011	44297011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021926.3	-1	reviewed	p.T222A	1.000	20	0%	100	48%	0	-	benign(0.006)	deleterious(0.04)	neutral(0.349)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
CHST1	8534	genome.wustl.edu	37	11	45671611	45671611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003654.4	-1	validated	p.M288T	0.052	8	0.000	31	0.516	13	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CHRM4	1132	genome.wustl.edu	37	11	46407153	46407153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.T319A	0.732	33	0%	147	42.2%	0	-	benign(0.031)	tolerated(0.56)	neutral(0.008)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CKAP5	9793	genome.wustl.edu	37	11	46839958	46839958	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008938.1	-1	validated	p.L52M	0.998	121	0%	133	44.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
C11orf49	79096	genome.wustl.edu	37	11	47183135	47183135	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003677.1	+1	validated	p.K320	0.995	12	0%	20	60%	52	32.6%	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47299761	47299761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.F381L	1.000	92	0%	213	42.7%	1	100%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_DENN,HMMSmart_SM00799
FNBP4	23360	genome.wustl.edu	37	11	47765619	47765619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015308.2	-1	validated	p.R448G	1.000	154	0%	171	45%	8	62.5%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
NUP160	23279	genome.wustl.edu	37	11	47825013	47825013	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015231.1	-1	validated	p.L918	1.000	268	0%	149	48.3%	1	100%	-	-	-	NULL
OR4S1	256148	genome.wustl.edu	37	11	48328456	48328456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004725.1	+1	provisional	p.S228P	0.025	65	0%	110	40%	0	-	benign(0)	deleterious(0.05)	neutral(0.345)	HMMPfam_7tm_1,superfamily_SSF81321
OR4C3	256144	genome.wustl.edu	37	11	48346855	48346855	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004702.1	+1	provisional	p.C121*	0.000	175	0%	130	23.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SERPING1	710	genome.wustl.edu	37	11	57381833	57381833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000062.2	+1	reviewed	p.C428R	1.000	78	0%	60	35%	1347	49.6%	probably_damaging(1)	tolerated(0.38)	deleterious(0.517)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
TMX2	51075	genome.wustl.edu	37	11	57506177	57506177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015959.2	+1	validated	p.E161D	0.998	153	0%	269	45.4%	11	45.4%	unknown(0)	-	-	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
ZFP91	80829	genome.wustl.edu	37	11	58380260	58380260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053023.3	+1	reviewed	p.R312S	1.000	113	0%	77	49.4%	5	40%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC643637	643637	genome.wustl.edu	37	11	58811011	58811011	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343101.1	+1	model	p.P70	0.364	66	0%	104	24%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)
FAM111A	63901	genome.wustl.edu	37	11	58919517	58919517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142519.1	+1	validated	p.M126V	0.850	78	0%	104	46.2%	7	42.8%	benign(0.117)	tolerated(0.07)	neutral(0.329)	NULL
MS4A10	341116	genome.wustl.edu	37	11	60557936	60557936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206893.3	+1	validated	p.A43V	0.008	29	0%	39	56.4%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
GANAB	23193	genome.wustl.edu	37	11	62400063	62400063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198335.2	-1	validated	p.D346N	1.000	11	0%	61	39.3%	13	53.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
INTS5	80789	genome.wustl.edu	37	11	62414643	62414643	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030628.1	-1	provisional	p.I970S	1.000	13	0%	73	39.7%	70	54.2%	benign(0.01)	tolerated(0.08)	neutral(0.300)	NULL
SLC22A24	283238	genome.wustl.edu	37	11	62863511	62863511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136506.1	-1	validated	p.F341Y	0.005	78	0%	74	13.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
RTN3	10313	genome.wustl.edu	37	11	63449116	63449116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201428.1	+1	validated	p.E3G	1.000	7	0.000	32	0.469	7	42.8%	unknown(0)	deleterious(0.01)	-	NULL
MARK2	2011	genome.wustl.edu	37	11	63663107	63663107	+	Splice_Site	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039469.2	+1	reviewed	e2+2	1.000	61	0%	141	48.2%	1	100%	-	-	-	-
FLRT1	23769	genome.wustl.edu	37	11	63884535	63884535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013280.4	+1	reviewed	p.N266H	0.994	14	0%	19	42.1%	0	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMSmart_SM00369,superfamily_L domain-like
VEGFB	7423	genome.wustl.edu	37	11	64003732	64003732	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003377.3	+1	provisional	p.M103L	1.000	57	0%	180	41.7%	149	38.2%	possibly_damaging(0.612)	deleterious(0.01)	deleterious(0.618)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
GPR137	56834	genome.wustl.edu	37	11	64054021	64054021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020155.3	+1	validated	p.V9L	1.000	15	0%	74	36.5%	16	31.2%	benign(0.053)	deleterious(0.04)	neutral(0.352)	NULL
ATG2A	23130	genome.wustl.edu	37	11	64678182	64678182	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015104.2	-1	validated	e12-2	0.994	7	0.000	68	0.412	0	-	-	-	-	-
CATSPER1	117144	genome.wustl.edu	37	11	65789294	65789294	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.L496	0.001	52	0%	164	40.9%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RBM4B	83759	genome.wustl.edu	37	11	66436112	66436112	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031492.2	-1	provisional	p.R355	1.000	32	0%	61	45.9%	21	42.8%	-	-	-	NULL
SPTBN2	6712	genome.wustl.edu	37	11	66482823	66482823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.N118S	0.996	33	0%	130	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
CHKA	1119	genome.wustl.edu	37	11	67837659	67837659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001277.2	-1	reviewed	p.L289P	1.000	101	0%	84	42.9%	29	41.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)
IGHMBP2	3508	genome.wustl.edu	37	11	68703748	68703748	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002180.2	+1	reviewed	p.A600	0.001	18	0%	85	44.7%	9	33.3%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
KRTAP5-9	3846	genome.wustl.edu	37	11	71259752	71259752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005553.3	+1	validated	p.C17G	1.000	27	0%	89	50.6%	3	0%	unknown(0)	tolerated(0.43)	-	NULL
KRTAP5-11	440051	genome.wustl.edu	37	11	71293428	71293428	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005405.2	-1	validated	p.C152*	0.998	25	0%	155	47.1%	0	-	-	-	-	NULL
NUMA1	4926	genome.wustl.edu	37	11	71720095	71720095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.L1659P	1.000	14	0%	48	50%	39	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71724563	71724563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.L1329S	0.099	9	0.000	18	0.389	45	53.3%	probably_damaging(0.981)	deleterious(0.04)	deleterious(0.774)	NULL
NUMA1	4926	genome.wustl.edu	37	11	71729440	71729440	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	e9+2	1.000	25	0%	45	46.7%	1	100%	-	-	-	-
LOC220077	220077	genome.wustl.edu	37	11	71961253	71961253	+	RNA	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_017002.2	-1	model	NULL	1.000	10	0%	38	39.5%	0	-	-	-	-	-
PDE2A	5138	genome.wustl.edu	37	11	72292949	72292949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002599.3	-1	validated	p.Y632H	1.000	30	0%	172	41.9%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	superfamily_HD-domain/PDEase-like
ARHGEF17	9828	genome.wustl.edu	37	11	73076571	73076571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.E1896G	1.000	16	0%	94	39.4%	23	47.8%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
SLCO2B1	11309	genome.wustl.edu	37	11	74904550	74904550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007256.3	+1	validated	p.F455L	0.000	16	0%	58	36.2%	0	-	benign(0)	tolerated(1)	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
ARRB1	408	genome.wustl.edu	37	11	74988472	74988472	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004041.3	-1	validated	p.P213	1.000	118	0%	274	37.6%	1	0%	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
WNT11	7481	genome.wustl.edu	37	11	75897990	75897990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447195	-1	known	p.W214R	0.000	7	0.000	11	0.545	9	44.4%	benign(0.001)	deleterious(0)	neutral(0.445)	HMMPfam_wnt,HMMSmart_WNT1
WNT11	7481	genome.wustl.edu	37	11	75902773	75902773	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004626.2	-1	reviewed	p.L242R	1.000	10	0%	36	33.3%	8	50%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMPfam_wnt,HMMSmart_WNT1
PRKRIR	5612	genome.wustl.edu	37	11	76063168	76063168	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004705.2	-1	provisional	p.V342	0.998	67	0%	57	36.8%	3	33.3%	-	-	-	NULL
C11orf30	56946	genome.wustl.edu	37	11	76261144	76261144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.D1308G	1.000	57	0%	47	42.6%	5	60%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
ALG8	79053	genome.wustl.edu	37	11	77832183	77832183	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024079.4	-1	reviewed	p.E136*	1.000	297	0%	190	44.7%	3	0%	-	-	-	HMMPfam_Alg6_Alg8
ODZ4	26011	genome.wustl.edu	37	11	78369281	78369281	+	Missense_Mutation	SNP	C	C	T	rs148029717	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R2711Q	1.000	30	0%	74	44.6%	0	-	probably_damaging(1)	tolerated(0.36)	deleterious(0.520)	NULL
PRCP	5547	genome.wustl.edu	37	11	82571083	82571083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199418.2	-1	reviewed	p.N103S	1.000	240	0%	133	42.1%	3	66.6%	benign(0)	tolerated(0.89)	-	HMMPfam_Peptidase_S28,superfamily_SSF53474
RAB30	27314	genome.wustl.edu	37	11	82708321	82708321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014488.3	-1	provisional	p.V13A	1.000	124	0%	121	43.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
C11orf73	51501	genome.wustl.edu	37	11	86017481	86017481	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016401.3	+1	validated	p.N75	1.000	84	0%	51	43.1%	33	57.5%	-	-	-	HMMPfam_DUF775
FAT3	120114	genome.wustl.edu	37	11	92577262	92577262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.D3577Y	1.000	63	0%	67	50.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC67	159989	genome.wustl.edu	37	11	93127651	93127651	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181645.3	+1	validated	p.E356	1.000	73	0%	77	45.5%	0	-	-	-	-	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93435968	93435968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.R1827G	0.000	71	0%	75	41.3%	1	0%	benign(0.018)	tolerated(1)	neutral(0.001)	NULL
KIAA1731	85459	genome.wustl.edu	37	11	93456393	93456393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033395.1	+1	validated	p.Q2045R	0.000	120	0%	60	50%	0	-	possibly_damaging(0.539)	tolerated(0.07)	deleterious(0.502)	NULL
MED17	9440	genome.wustl.edu	37	11	93535110	93535110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004268.4	+1	reviewed	p.T480A	1.000	114	0%	64	56.2%	12	50%	probably_damaging(0.996)	tolerated(0.48)	deleterious(0.472)	HMMPfam_DUF2364
MTMR2	8898	genome.wustl.edu	37	11	95581040	95581040	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016156.5	-1	reviewed	p.S339	1.000	221	0%	118	39.8%	2	50%	-	-	-	HMMPfam_Myotub-related,superfamily_SSF52799
BIRC2	329	genome.wustl.edu	37	11	102248842	102248842	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.C595	1.000	153	0%	187	39.6%	25	72%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4
MMP27	64066	genome.wustl.edu	37	11	102567426	102567426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022122.2	-1	reviewed	p.N254D	0.000	170	0%	104	33.7%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
MMP10	4319	genome.wustl.edu	37	11	102647354	102647354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002425.2	-1	reviewed	p.Q259R	1.000	52	0%	87	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
ACAT1	38	genome.wustl.edu	37	11	108004559	108004559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000019.3	+1	reviewed	p.V45L	1.000	67	0%	110	40%	3	66.6%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ACAT1	38	genome.wustl.edu	37	11	108010927	108010927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000019.3	+1	reviewed	p.T239A	1.000	120	0%	57	59.6%	12	58.3%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Thiolase_N,superfamily_Thiolase-like
ATM	472	genome.wustl.edu	37	11	108206584	108206584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	p.L2722M	1.000	110	0%	63	42.9%	8	62.5%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1
LOC728196	728196	genome.wustl.edu	37	11	111384318	111384318	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040780.2	+1	model	NULL	0.000	46	0%	88	42%	1	0%	-	-	-	-
SIK2	23235	genome.wustl.edu	37	11	111582955	111582955	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015191.1	+1	validated	p.P374	0.589	19	0%	64	31.2%	2	100%	-	-	-	superfamily_Protein kinase-like (PK-like)
NCAM1	4684	genome.wustl.edu	37	11	113140958	113140958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433634	+1	known	p.I182T	1.000	33	0%	156	37.2%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
ZBTB16	7704	genome.wustl.edu	37	11	114057690	114057690	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018011.1	+1	reviewed	p.F461	0.907	83	0%	141	33.3%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DSCAML1	57453	genome.wustl.edu	37	11	117651260	117651260	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.T164	0.983	19	0%	149	47.7%	0	-	benign(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
MPZL3	196264	genome.wustl.edu	37	11	118107809	118107809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198275.1	-1	provisional	p.V136A	1.000	104	0%	61	54.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PHLDB1	23187	genome.wustl.edu	37	11	118509632	118509632	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144758.1	+1	validated	p.S853R	0.899	10	0%	35	25.7%	14	85.7%	possibly_damaging(0.471)	tolerated(0.4)	neutral(0.171)	NULL
CBL	867	genome.wustl.edu	37	11	119170234	119170234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.R822G	0.997	24	0%	59	35.6%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	NULL
USP2	9099	genome.wustl.edu	37	11	119243518	119243518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004205.4	-1	validated	p.S225G	1.000	7	0.000	42	0.381	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
TRIM29	23650	genome.wustl.edu	37	11	120008238	120008238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012101.3	-1	reviewed	p.S168P	0.297	5	0.000	23	0.391	0	-	unknown(0)	-	-	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120318612	120318612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.K540R	0.991	68	0%	34	47.1%	6	16.6%	benign(0.004)	tolerated(0.64)	neutral(0.003)	HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS
GRIK4	2900	genome.wustl.edu	37	11	120769319	120769319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014619.2	+1	reviewed	p.N415D	1.000	28	0%	99	40.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
HSPA8	3312	genome.wustl.edu	37	11	122931435	122931435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006597.3	-1	reviewed	p.M93V	0.994	79	0%	167	43.1%	37	32.4%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_HSP70,superfamily_Actin-like ATPase domain
CLMP	79827	genome.wustl.edu	37	11	122944266	122944266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024769.2	-1	validated	p.K346N	1.000	81	0%	166	47.6%	0	-	possibly_damaging(0.894)	tolerated(0.17)	neutral(0.411)	NULL
SCN3B	55800	genome.wustl.edu	37	11	123516391	123516391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040151.1	-1	reviewed	p.M41I	1.000	30	0%	41	41.5%	0	-	possibly_damaging(0.45)	tolerated(0.33)	neutral(0.171)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CDON	50937	genome.wustl.edu	37	11	125891414	125891414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016952.4	-1	validated	p.D26E	0.997	60	0%	51	54.9%	0	-	probably_damaging(0.995)	tolerated(0.2)	deleterious(0.507)	superfamily_Immunoglobulin
ADAMTS15	170689	genome.wustl.edu	37	11	130343024	130343024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139055.2	+1	reviewed	p.G721R	0.995	14	0%	46	34.8%	0	-	benign(0.148)	deleterious(0.05)	neutral(0.358)	HMMPfam_ADAM_spacer1
IGSF9B	22997	genome.wustl.edu	37	11	133790033	133790033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.L1196P	1.000	12	0%	24	41.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133794738	133794738	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.N699I	1.000	21	0%	78	46.2%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_FN_III-like
CCDC77	84318	genome.wustl.edu	37	12	549859	549859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032358.3	+1	validated	p.E373G	0.965	128	0%	88	36.4%	1	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
B4GALNT3	283358	genome.wustl.edu	37	12	663004	663004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173593.3	+1	validated	p.S639G	0.997	29	0%	105	45.7%	16	31.2%	possibly_damaging(0.775)	deleterious(0.02)	deleterious(0.671)	NULL
WNK1	65125	genome.wustl.edu	37	12	1005566	1005566	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.K1971	0.000	67	0%	83	39.8%	4	0%	-	-	-	NULL
ERC1	23085	genome.wustl.edu	37	12	1137166	1137166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178040.2	+1	reviewed	p.R33S	1.000	17	0%	31	38.7%	0	-	unknown(0)	deleterious(0)	-	NULL
EFCAB4B	84766	genome.wustl.edu	37	12	3749945	3749945	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144959.1	-1	validated	p.R424	0.007	67	0%	65	35.4%	2	0%	-	-	-	NULL
ENSG00000118976	0	genome.wustl.edu	37	12	3949293	3949293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000237841	+1	known	p.Y276H	1.000	187	0%	348	48.6%	0	-	-	-	-	NULL
AKAP3	10566	genome.wustl.edu	37	12	4737145	4737145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.V308A	1.000	76	1.3%	102	65.7%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP3	10566	genome.wustl.edu	37	12	4737592	4737592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.L159S	0.548	95	0%	127	60.6%	0	-	benign(0.259)	deleterious(0.01)	neutral(0.433)	HMMSmart_SM00807
KCNA6	3742	genome.wustl.edu	37	12	4920235	4920235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002235.3	+1	reviewed	p.V343A	1.000	22	0%	80	45%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_Ion_trans,superfamily_SSF81324
VWF	7450	genome.wustl.edu	37	12	6061567	6061567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.L2702P	1.000	50	0%	125	40%	36	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
TAPBPL	55080	genome.wustl.edu	37	12	6567916	6567916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018009.4	+1	validated	p.R337Q	0.337	37	0%	76	43.4%	14	21.4%	possibly_damaging(0.478)	tolerated(0.2)	neutral(0.207)	HMMSmart_SM00407,superfamily_Immunoglobulin
LEPREL2	10536	genome.wustl.edu	37	12	6942757	6942757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290510	+1	known	p.D404G	0.997	24	0%	201	42.3%	12	16.6%	possibly_damaging(0.555)	tolerated(0.07)	deleterious(0.508)	NULL
LPCAT3	10162	genome.wustl.edu	37	12	7091886	7091886	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005768.5	-1	validated	p.L106R	0.994	75	0%	124	32.3%	4	25%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CD163L1	283316	genome.wustl.edu	37	12	7525943	7525943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.A1235T	0.002	23	0%	45	37.8%	0	-	benign(0.156)	tolerated(0.32)	neutral(0.038)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
NANOG	79923	genome.wustl.edu	37	12	7945597	7945597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024865.2	+1	validated	p.S68Y	1.000	86	0%	103	49.5%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SLC2A3	6515	genome.wustl.edu	37	12	8082419	8082419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006931.2	-1	validated	p.E241G	1.000	141	0%	182	36.8%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
PZP	5858	genome.wustl.edu	37	12	9312536	9312536	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002864.2	-1	validated	p.T1045	0.194	104	0%	151	41.1%	0	-	-	-	-	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
CLEC9A	283420	genome.wustl.edu	37	12	10215710	10215710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207345.2	+1	provisional	p.Y126D	0.005	172	0%	83	42.2%	1	0%	probably_damaging(0.982)	tolerated(0.09)	deleterious(0.723)	HMMSmart_SM00034,superfamily_C-type lectin-like
TAS2R8	50836	genome.wustl.edu	37	12	10958774	10958774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023918.1	-1	reviewed	p.F269S	0.001	54	0%	26	57.7%	0	-	benign(0.057)	deleterious(0)	neutral(0.448)	HMMPfam_TAS2R,superfamily_SSF81321
GRIN2B	2904	genome.wustl.edu	37	12	13715757	13715757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000834.3	-1	reviewed	p.H1472R	1.000	57	0%	132	40.9%	0	-	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMPfam_NMDAR2_C
EPS8	2059	genome.wustl.edu	37	12	15803870	15803870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004447.5	-1	reviewed	p.M441V	0.013	62	0%	125	42.4%	1	100%	benign(0)	tolerated(1)	-	NULL
STRAP	11171	genome.wustl.edu	37	12	16047036	16047036	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007178.3	+1	validated	p.S153	1.000	191	0%	185	42.2%	8	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PIK3C2G	5288	genome.wustl.edu	37	12	18477980	18477980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004570.4	+1	reviewed	p.L407S	0.997	291	0%	234	47.9%	1	100%	benign(0)	tolerated(1)	-	NULL
CASC1	55259	genome.wustl.edu	37	12	25297503	25297503	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018272.3	-1	validated	p.V266	0.000	195	0%	147	42.2%	2	100%	-	-	-	NULL
ASUN	55726	genome.wustl.edu	37	12	27067003	27067003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018164.2	-1	validated	p.N493S	1.000	383	0.3%	122	36.9%	12	50%	possibly_damaging(0.806)	tolerated(0.37)	neutral(0.323)	HMMPfam_DUF2151
ERGIC2	51290	genome.wustl.edu	37	12	29496110	29496110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016570.2	-1	validated	p.F311V	0.929	60	0%	54	46.3%	11	27.2%	benign(0.282)	deleterious(0.02)	deleterious(0.470)	HMMPfam_DUF1692
DDX11	1663	genome.wustl.edu	37	12	31249809	31249809	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152438.1	+1	reviewed	p.A549	0.000	17	0%	80	43.8%	8	50%	-	-	-	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138616	32138616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.D1576G	0.111	90	0%	75	50.7%	6	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
FGD4	121512	genome.wustl.edu	37	12	32755211	32755211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139241.2	+1	reviewed	p.E318G	1.000	121	0%	108	42.6%	0	-	benign(0.002)	tolerated(0.17)	neutral(0.059)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
YARS2	51067	genome.wustl.edu	37	12	32903673	32903673	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040436.1	-1	validated	p.E361	0.996	161	0%	240	46.7%	18	50%	-	-	-	HMMPfam_tRNA-synt_1b,superfamily_SSF52374
SYT10	341359	genome.wustl.edu	37	12	33579239	33579239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198992.2	-1	provisional	p.E115*	1.000	206	0%	157	45.2%	0	-	-	-	-	NULL
C12orf40	283461	genome.wustl.edu	37	12	40078720	40078720	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031748.2	+1	validated	p.G446	0.091	174	0%	83	37.3%	0	-	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40634339	40634339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.L209S	0.337	204	0%	107	44.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_ARM-type_fold
CNTN1	1272	genome.wustl.edu	37	12	41352958	41352958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001843.2	+1	reviewed	p.K576E	0.051	62	0%	32	53.1%	0	-	benign(0.023)	tolerated(0.06)	neutral(0.324)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ADAMTS20	80070	genome.wustl.edu	37	12	43821126	43821126	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.Y1364	0.766	26	0%	41	58.5%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PUS7L	83448	genome.wustl.edu	37	12	44148900	44148900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098614.1	-1	validated	p.I50T	0.000	310	0%	187	41.7%	0	-	benign(0)	tolerated(1)	-	superfamily_PsdUridine_synth_cat_dom
TWF1	5756	genome.wustl.edu	37	12	44191146	44191146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002822.3	-1	reviewed	p.L274P	1.000	240	0%	213	44.6%	8	50%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
NELL2	4753	genome.wustl.edu	37	12	44917208	44917208	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.L672	0.962	47	0%	75	38.7%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
NELL2	4753	genome.wustl.edu	37	12	45209787	45209787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.I156T	1.000	151	0%	161	45.3%	0	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl
SCAF11	9169	genome.wustl.edu	37	12	46316294	46316294	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.D1399	0.993	219	0%	102	47.1%	21	38%	-	-	-	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321011	46321011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004719.2	-1	validated	p.K825E	0.998	202	0%	133	40.6%	3	66.6%	possibly_damaging(0.907)	tolerated(0.44)	neutral(0.373)	NULL
SLC38A2	54407	genome.wustl.edu	37	12	46758954	46758954	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018976.4	-1	validated	p.G194	0.872	140	0%	129	47.3%	3	0%	-	-	-	HMMPfam_Aa_trans
AMIGO2	347902	genome.wustl.edu	37	12	47472570	47472570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143668.1	-1	validated	p.R72S	1.000	74	0%	143	42.7%	0	-	benign(0.035)	tolerated(0.11)	neutral(0.274)	HMMSmart_LRRNT,superfamily_SSF52058
SLC48A1	55652	genome.wustl.edu	37	12	48174054	48174054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017842.2	+1	validated	p.S144I	1.000	26	0%	73	54.8%	7	57.1%	probably_damaging(0.99)	tolerated(0.14)	deleterious(0.691)	NULL
HDAC7	51564	genome.wustl.edu	37	12	48177992	48177992	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015401.3	-1	reviewed	p.W934R	1.000	7	0.000	44	0.568	75	45.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52768
SENP1	29843	genome.wustl.edu	37	12	48490171	48490171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014554.2	-1	validated	p.T59A	0.999	135	0%	149	43.6%	0	-	benign(0.009)	tolerated(0.09)	neutral(0.297)	NULL
MLL2	8085	genome.wustl.edu	37	12	49427174	49427174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.K3772E	0.543	12	0%	54	48.1%	3	66.6%	unknown(0)	-	-	NULL
TUBA1B	10376	genome.wustl.edu	37	12	49522706	49522706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006082.2	-1	validated	p.G131S	1.000	39	0%	201	37.3%	83	22.8%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
AQP2	359	genome.wustl.edu	37	12	50348467	50348467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000486.5	+1	reviewed	p.V194I	0.016	71	1.4%	289	42.6%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_MIP,superfamily_MIP
LARP4	113251	genome.wustl.edu	37	12	50860778	50860778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199188.2	+1	validated	p.T480A	1.000	144	0%	190	42.1%	1	100%	benign(0.001)	tolerated(0.06)	neutral(0.323)	NULL
LARP4	113251	genome.wustl.edu	37	12	50867863	50867863	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199188.2	+1	validated	p.S589	0.967	48	0%	111	40.5%	0	-	-	-	-	NULL
SCN8A	6334	genome.wustl.edu	37	12	52080887	52080887	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.T166	0.987	157	0%	107	39.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KRT75	9119	genome.wustl.edu	37	12	52822525	52822525	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004693.2	-1	reviewed	p.Y346	0.302	61	0%	128	48.4%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
KRT77	374454	genome.wustl.edu	37	12	53097178	53097178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175078.2	-1	reviewed	p.M14T	0.977	51	0%	150	56%	0	-	unknown(0)	tolerated(0.24)	-	NULL
EIF4B	1975	genome.wustl.edu	37	12	53412757	53412757	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001417.4	+1	validated	p.E109D	1.000	105	0%	76	35.5%	12	25%	possibly_damaging(0.61)	tolerated(0.09)	deleterious(0.508)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TENC1	23371	genome.wustl.edu	37	12	53452496	53452496	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015319.2	+1	reviewed	e17-2	0.974	12	0%	61	49.2%	6	100%	-	-	-	-
OR10A7	121364	genome.wustl.edu	37	12	55615080	55615080	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005280.1	+1	provisional	p.I91N	0.010	242	0%	149	36.9%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C74	254783	genome.wustl.edu	37	12	55641281	55641281	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005490.1	+1	provisional	p.S70	0.000	161	0%	154	46.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OR6C74	254783	genome.wustl.edu	37	12	55641510	55641510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005490.1	+1	provisional	p.W147R	0.995	55	0%	72	43.1%	0	-	possibly_damaging(0.834)	deleterious(0)	deleterious(0.762)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C4	341418	genome.wustl.edu	37	12	55945299	55945299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005494.1	+1	provisional	p.T97A	0.014	85	1.2%	88	33%	0	-	benign(0)	tolerated(0.98)	-	HMMPfam_7tm_1,superfamily_SSF81321
CD63	967	genome.wustl.edu	37	12	56119360	56119360	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001780.4	-1	reviewed	p.G234	1.000	32	0%	106	44.3%	3794	44.2%	-	-	-	NULL
GDF11	10220	genome.wustl.edu	37	12	56142546	56142546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005811.3	+1	reviewed	p.T208A	1.000	17	0%	45	22.2%	10	40%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
PMEL	6490	genome.wustl.edu	37	12	56350000	56350000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006928.3	-1	validated	p.S453Y	0.992	13	0%	45	33.3%	1	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
ERBB3	2065	genome.wustl.edu	37	12	56482341	56482341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.D297Y	1.000	90	0%	105	52.4%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Furin-like,superfamily_Growth factor receptor domain
ANKRD52	283373	genome.wustl.edu	37	12	56642656	56642656	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	e16-2	1.000	11	0%	42	33.3%	0	-	-	-	-	-
NACA	4666	genome.wustl.edu	37	12	57112966	57112966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113203.1	-1	validated	p.S783Y	0.182	40	0%	59	40.7%	0	-	unknown(0)	-	-	NULL
STAT6	6778	genome.wustl.edu	37	12	57492328	57492328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003153.4	-1	reviewed	p.S707P	0.000	35	0%	112	36.6%	161	37.8%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
LRP1	4035	genome.wustl.edu	37	12	57567078	57567078	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.C1097	1.000	16	0%	65	40%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
LRP1	4035	genome.wustl.edu	37	12	57597257	57597257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.D3635G	0.990	4	0.000	20	0.450	5	20%	possibly_damaging(0.776)	tolerated(0.36)	neutral(0.309)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
SRGAP1	57522	genome.wustl.edu	37	12	64480777	64480777	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	e11-2	1.000	343	0%	71	42.3%	0	-	-	-	-	-
CAND1	55832	genome.wustl.edu	37	12	67699464	67699464	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018448.3	+1	validated	p.S672	1.000	50	0%	41	36.6%	2	50%	-	-	-	superfamily_ARM repeat
MDM1	56890	genome.wustl.edu	37	12	68696631	68696631	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017440.4	-1	reviewed	p.L581	0.002	50	0%	47	51.1%	6	16.6%	-	-	-	NULL
MDM2	4193	genome.wustl.edu	37	12	69233289	69233289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002392.3	+1	reviewed	p.D385G	0.980	116	0%	76	32.9%	3	100%	benign(0.005)	tolerated(0.1)	neutral(0.286)	NULL
MDM2	4193	genome.wustl.edu	37	12	69233329	69233329	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002392.3	+1	reviewed	p.E398	1.000	120	0%	84	61.9%	2	0%	unknown(0)	tolerated(0.4)	-	NULL
CPSF6	11052	genome.wustl.edu	37	12	69652731	69652731	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007007.2	+1	validated	p.P352	0.686	38	2.6%	88	45.5%	23	30.4%	-	-	-	NULL
ENSG00000246966	0	genome.wustl.edu	37	12	70932092	70932092	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501222	+1	known	NULL	0.006	37	0%	42	57.1%	0	-	-	-	-	-
LGR5	8549	genome.wustl.edu	37	12	71974112	71974112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003667.2	+1	provisional	p.N487K	0.015	123	0%	156	45.5%	13	46.1%	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	superfamily_L domain-like
CCDC59	29080	genome.wustl.edu	37	12	82750886	82750886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014167.4	-1	validated	p.K106R	1.000	234	0%	345	47%	20	45%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
ALX1	8092	genome.wustl.edu	37	12	85677587	85677587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006982.2	+1	reviewed	p.H155R	1.000	38	0%	77	42.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
RASSF9	9182	genome.wustl.edu	37	12	86199679	86199679	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005447.3	-1	reviewed	p.E37*	1.000	112	0%	88	40.9%	0	-	-	-	-	HMMSmart_SM00314
C12orf50	160419	genome.wustl.edu	37	12	88379815	88379815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152589.1	-1	predicted	p.R313I	1.000	216	0%	107	36.4%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
CEP290	80184	genome.wustl.edu	37	12	88465627	88465627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.L1929S	1.000	437	0%	168	45.8%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCN	1634	genome.wustl.edu	37	12	91546888	91546888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001920.3	-1	reviewed	p.L244P	1.000	147	0%	136	46.3%	78	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
PLEKHG7	440107	genome.wustl.edu	37	12	93157879	93157879	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004330.2	+1	validated	p.V281	0.000	171	0%	137	38%	5	40%	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
EEA1	8411	genome.wustl.edu	37	12	93196347	93196347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003566.3	-1	validated	p.Q835K	0.985	502	0%	158	47.5%	0	-	benign(0.009)	tolerated(0.39)	neutral(0.017)	NULL
CCDC41	51134	genome.wustl.edu	37	12	94725593	94725593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042399.1	-1	validated	p.E530D	1.000	276	0%	217	47.5%	13	46.1%	possibly_damaging(0.895)	tolerated(0.28)	neutral(0.384)	NULL
VEZT	55591	genome.wustl.edu	37	12	95688088	95688088	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017599.3	+1	validated	p.V521	0.000	114	0%	127	54.3%	10	70%	-	-	-	NULL
APAF1	317	genome.wustl.edu	37	12	99042441	99042441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181861.1	+1	reviewed	p.M59T	0.012	159	0%	308	44.5%	0	-	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_CARD,superfamily_WD40 repeat-like
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452984	100452984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.T691A	0.958	81	0%	104	36.5%	0	-	benign(0.271)	tolerated(0.29)	neutral(0.058)	NULL
UHRF1BP1L	23074	genome.wustl.edu	37	12	100453161	100453161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.D632Y	1.000	15	0%	21	57.1%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
GOLGA2P5	55592	genome.wustl.edu	37	12	100564373	100564373	+	RNA	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024261.1	-1	validated	NULL	0.990	4	0.000	13	0.538	0	-	-	-	-	-
GNPTAB	79158	genome.wustl.edu	37	12	102140979	102140979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.I1245K	0.999	252	0%	174	31.6%	2	0%	benign(0.126)	tolerated(0.15)	neutral(0.252)	NULL
POLR3B	55703	genome.wustl.edu	37	12	106848441	106848441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018082.5	+1	validated	p.Y749H	1.000	77	0%	52	38.5%	0	-	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	HMMPfam_RNA_pol_Rpb2_6,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
RIC8B	55188	genome.wustl.edu	37	12	107254061	107254061	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018157.2	+1	validated	p.K441T	1.000	71	0%	61	45.9%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ric8
MTERFD3	80298	genome.wustl.edu	37	12	107371353	107371353	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033050.1	-1	validated	p.P380	0.986	205	0%	122	44.3%	4	25%	-	-	-	NULL
CRY1	1407	genome.wustl.edu	37	12	107393632	107393632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004075.3	-1	validated	p.K278N	1.000	98	0%	47	46.8%	1	0%	possibly_damaging(0.901)	tolerated(0.13)	deleterious(0.609)	HMMPfam_FAD_binding_7,superfamily_Cryptochrome/photolyase FAD-binding domain
BTBD11	121551	genome.wustl.edu	37	12	108011214	108011214	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018072.1	+1	validated	e9+1	1.000	41	0%	67	50.7%	0	-	-	-	-	-
FICD	11153	genome.wustl.edu	37	12	108912197	108912197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007076.2	+1	validated	p.A108T	1.000	11	0%	52	44.2%	0	-	benign(0.044)	tolerated(0.06)	neutral(0.325)	superfamily_SSF48452
FICD	11153	genome.wustl.edu	37	12	108912305	108912305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007076.2	+1	validated	p.T144P	0.986	11	0%	52	36.5%	2	100%	benign(0.208)	tolerated(0.06)	neutral(0.343)	superfamily_SSF48452
CORO1C	23603	genome.wustl.edu	37	12	109072092	109072092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014325.2	-1	reviewed	p.N92D	1.000	21	0%	35	54.3%	5	20%	benign(0.095)	tolerated(0.12)	neutral(0.268)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ACACB	32	genome.wustl.edu	37	12	109637256	109637256	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.D893Y	1.000	57	0%	78	42.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Single hybrid motif
MYO1H	283446	genome.wustl.edu	37	12	109870701	109870701	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101421.3	+1	provisional	e19-1	1.000	27	0%	42	42.9%	0	-	-	-	-	-
GIT2	9815	genome.wustl.edu	37	12	110403334	110403334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057169.3	-1	reviewed	p.Q271H	0.981	95	0%	85	37.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GIT_SHD,HMMSmart_SM00555
IFT81	28981	genome.wustl.edu	37	12	110570417	110570417	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143779.1	+1	validated	p.G165	1.000	81	0%	85	40%	1	100%	-	-	-	NULL
MAPKAPK5	8550	genome.wustl.edu	37	12	112330835	112330835	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139078.1	+1	reviewed	p.E464D	1.000	108	0%	98	35.7%	22	27.2%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
NAA25	80018	genome.wustl.edu	37	12	112486217	112486217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.Y587H	1.000	143	0%	111	45.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NatB_MDM20,superfamily_TPR-like
C12orf51	283450	genome.wustl.edu	37	12	112677783	112677783	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.A1247	1.000	42	0%	69	39.1%	1	100%	-	-	-	NULL
PTPN11	5781	genome.wustl.edu	37	12	112926959	112926959	+	Missense_Mutation	SNP	C	C	T	rs191525506	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002834.3	+1	reviewed	p.R527C	1.000	57	0%	61	32.8%	2	100%	benign(0.041)	tolerated(0.05)	neutral(0.348)	NULL
OAS2	4939	genome.wustl.edu	37	12	113444398	113444398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016817.2	+1	reviewed	p.Y550C	0.638	40	0%	36	44.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
TPCN1	53373	genome.wustl.edu	37	12	113716018	113716018	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143819.1	+1	validated	p.Y475	0.539	230	0%	205	40.5%	4	50%	-	-	-	NULL
TBX5	6910	genome.wustl.edu	37	12	114804192	114804193	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000192.3	-1	reviewed	p.E253fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MED13L	23389	genome.wustl.edu	37	12	116418598	116418598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.F1774S	1.000	51	0%	50	62%	3	100%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TRAP_240kDa
KSR2	283455	genome.wustl.edu	37	12	117962906	117962906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173598.4	-1	validated	p.Q628R	1.000	26	0%	55	50.9%	0	-	benign(0.31)	tolerated(0.62)	neutral(0.101)	superfamily_Protein kinase-like (PK-like)
GCN1L1	10985	genome.wustl.edu	37	12	120621479	120621479	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.K107Q	1.000	17	0%	31	41.9%	0	-	benign(0.192)	tolerated(0.61)	neutral(0.022)	superfamily_ARM repeat
RNF10	9921	genome.wustl.edu	37	12	121000804	121000804	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014868.4	+1	reviewed	p.V395	0.254	116	0%	165	44.8%	43	32.5%	-	-	-	NULL
SETD1B	23067	genome.wustl.edu	37	12	122268116	122268116	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.S1915A	1.000	22	0%	64	43.8%	8	25%	unknown(0)	-	-	HMMSmart_PostSET
LRRC43	254050	genome.wustl.edu	37	12	122669273	122669273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098519.1	+1	validated	p.T120A	0.042	28	0%	94	45.7%	0	-	benign(0.056)	tolerated(0.47)	neutral(0.014)	superfamily_Outer arm dynein light chain 1
KNTC1	9735	genome.wustl.edu	37	12	123034378	123034378	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.S351	0.131	185	0%	109	45%	0	-	-	-	-	NULL
KNTC1	9735	genome.wustl.edu	37	12	123107049	123107049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.E2137G	1.000	124	0%	57	42.1%	17	29.4%	benign(0.079)	deleterious(0.03)	neutral(0.370)	NULL
DNAH10	196385	genome.wustl.edu	37	12	124317800	124317800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207437.3	+1	validated	p.L1444P	1.000	99	0%	80	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
TMEM132B	114795	genome.wustl.edu	37	12	126138565	126138565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.T849N	0.997	50	0%	36	25%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
SFSWAP	6433	genome.wustl.edu	37	12	132262624	132262624	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004592.2	+1	reviewed	p.T719	0.267	29	0%	96	54.2%	44	36.3%	-	-	-	NULL
DDX51	317781	genome.wustl.edu	37	12	132624296	132624296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175066.3	-1	validated	p.M620V	0.994	24	0%	88	39.8%	19	42.1%	benign(0.205)	deleterious(0.02)	neutral(0.403)	superfamily_SSF52540
ANKLE2	23141	genome.wustl.edu	37	12	133306631	133306631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015114.1	-1	validated	p.N706T	0.000	47	0%	109	41.3%	37	64.8%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
MPHOSPH8	54737	genome.wustl.edu	37	13	20242544	20242544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017520.3	+1	validated	p.I734M	0.976	128	0%	116	39.7%	5	40%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PARP4	143	genome.wustl.edu	37	13	25075965	25075965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006437.3	-1	reviewed	p.H47R	0.990	139	0%	166	41%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
RNF17	56163	genome.wustl.edu	37	13	25363486	25363486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031277.2	+1	reviewed	p.I262V	0.989	61	0%	40	42.5%	0	-	benign(0.017)	deleterious(0)	neutral(0.445)	NULL
SNORD102	26771	genome.wustl.edu	37	13	27829215	27829215	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002574.1	+1	provisional	NULL	1.000	104	0%	77	35.1%	0	-	-	-	-	-
RPL21	6144	genome.wustl.edu	37	13	27830372	27830372	+	Silent	SNP	C	C	T	rs9793060	byCluster	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000982.3	+1	reviewed	p.H98	1.000	48	0%	70	37.1%	74	0%	-	-	-	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain
MTIF3	219402	genome.wustl.edu	37	13	28011374	28011374	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152912.4	-1	reviewed	p.N166T	0.999	249	0%	182	36.3%	153	52.2%	possibly_damaging(0.754)	tolerated(0.09)	deleterious(0.575)	superfamily_Translation initiation factor IF3 C-terminal domain
LNX2	222484	genome.wustl.edu	37	13	28143281	28143281	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.C180*	0.004	57	0%	61	41%	1	0%	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32929407	32929407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.C2473R	0.000	61	0%	35	42.9%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33344372	33344372	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015032.3	+1	reviewed	p.S1246R	0.277	59	0%	29	44.8%	5	40%	benign(0.114)	deleterious(0.04)	neutral(0.358)	NULL
STARD13	90627	genome.wustl.edu	37	13	33703173	33703173	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178006.3	-1	validated	p.T547	0.321	38	0%	68	41.2%	0	-	-	-	-	NULL
NBEA	26960	genome.wustl.edu	37	13	35733742	35733742	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015678.4	+1	validated	p.S1145*	1.000	99	0%	72	33.3%	0	-	-	-	-	superfamily_ARM repeat
CCNA1	8900	genome.wustl.edu	37	13	37011837	37011837	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003914.3	+1	reviewed	p.P123	0.005	65	0%	118	55.9%	7	57.1%	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39438600	39438600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.Y2614H	1.000	71	0%	49	65.3%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PROSER1	80209	genome.wustl.edu	37	13	39587538	39587538	+	Silent	SNP	C	C	T	rs187828982	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025138.3	-1	validated	p.S617	0.189	56	0%	118	44.9%	6	66.6%	-	-	-	NULL
NHLRC3	387921	genome.wustl.edu	37	13	39616266	39616266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012754.2	+1	validated	p.K137R	0.982	252	0%	387	44.4%	4	50%	possibly_damaging(0.909)	tolerated(0.36)	neutral(0.382)	superfamily_SSF101898
AKAP11	11215	genome.wustl.edu	37	13	42875466	42875466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016248.2	+1	reviewed	p.S862P	0.002	13	0%	17	47.1%	0	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	NULL
TSC22D1	8848	genome.wustl.edu	37	13	45009014	45009014	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183422.2	-1	validated	p.L990	1.000	42	0%	118	53.4%	46	52.1%	-	-	-	HMMPfam_TSC22,PatternScan_TSC22
TSC22D1	8848	genome.wustl.edu	37	13	45148779	45148779	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183422.2	-1	validated	p.S478C	1.000	70	0%	136	45.6%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RCBTB2	1102	genome.wustl.edu	37	13	49086226	49086226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001268.2	-1	reviewed	p.C201R	1.000	111	0%	123	40.7%	2	50%	possibly_damaging(0.62)	tolerated(0.54)	neutral(0.224)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
CAB39L	81617	genome.wustl.edu	37	13	49885131	49885131	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079670.1	-1	validated	e8-2	1.000	80	0%	106	33%	0	-	-	-	-	-
KCNRG	283518	genome.wustl.edu	37	13	50590137	50590137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173605.1	+1	validated	p.R170G	1.000	40	0%	59	44.1%	3	0%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
INTS6	26512	genome.wustl.edu	37	13	51943205	51943205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012141.2	-1	reviewed	p.Q782H	0.799	206	0%	135	38.5%	7	57.1%	possibly_damaging(0.459)	tolerated(0.12)	neutral(0.411)	NULL
UTP14C	9724	genome.wustl.edu	37	13	52603421	52603421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021645.5	+1	validated	p.G161R	0.728	55	0%	58	56.9%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	HMMPfam_Utp14
NEK5	341676	genome.wustl.edu	37	13	52684507	52684507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199289.1	-1	provisional	p.G146W	1.000	478	0.2%	167	41.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DIAPH3	81624	genome.wustl.edu	37	13	60385043	60385043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.E1014D	0.798	441	0%	202	43.1%	0	-	benign(0.008)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00498,superfamily_Formin homology 2 domain (FH2 domain)
DIAPH3	81624	genome.wustl.edu	37	13	60485872	60485872	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042517.1	-1	validated	p.V788	0.690	101	0%	61	47.5%	0	-	-	-	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
KLHL1	57626	genome.wustl.edu	37	13	70456434	70456434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.L403P	1.000	55	0%	96	42.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BACK
MYCBP2	23077	genome.wustl.edu	37	13	77740590	77740590	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.R2034	0.996	100	0%	88	39.8%	0	-	-	-	-	NULL
RBM26	64062	genome.wustl.edu	37	13	79940775	79940775	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022118.3	-1	validated	p.P376	1.000	25	0%	37	45.9%	2	100%	-	-	-	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84454272	84454272	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.N457	1.000	49	0%	72	44.4%	0	-	-	-	-	superfamily_SSF52058
DCT	1638	genome.wustl.edu	37	13	95121279	95121279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129889.1	-1	validated	p.C106R	1.000	20	0%	42	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_EGF_LAM_1,superfamily_Di-copper_centre,PatternScan_EGF_1
DNAJC3	5611	genome.wustl.edu	37	13	96375600	96375600	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006260.3	+1	reviewed	p.L100	0.963	179	0%	176	40.9%	0	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
OXGR1	27199	genome.wustl.edu	37	13	97639237	97639237	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080818.3	-1	reviewed	p.I259	1.000	80	0%	146	44.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
STK24	8428	genome.wustl.edu	37	13	99127140	99127140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003576.3	-1	validated	p.T190A	1.000	20	0%	69	43.5%	17	52.9%	possibly_damaging(0.478)	deleterious(0)	deleterious(0.603)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ITGBL1	9358	genome.wustl.edu	37	13	102345047	102345047	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004791.1	+1	provisional	p.C376	0.937	56	0%	100	37%	0	-	-	-	-	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196
LOC643677	643677	genome.wustl.edu	37	13	103391975	103391975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.I3620T	0.000	251	0%	122	41%	0	-	-	-	-	NULL
LIG4	3981	genome.wustl.edu	37	13	108861526	108861526	+	Silent	SNP	C	C	T	rs184527984	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098268.1	-1	reviewed	p.T697	0.001	101	0%	145	34.5%	2	0%	-	-	-	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT
TNFSF13B	10673	genome.wustl.edu	37	13	108939151	108939151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006573.3	+1	reviewed	p.V142A	0.659	126	0%	78	41%	4	0%	possibly_damaging(0.643)	tolerated(0.21)	neutral(0.270)	superfamily_TNF-like
ARHGEF7	8874	genome.wustl.edu	37	13	111935652	111935652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113511.1	+1	reviewed	p.L652P	1.000	23	0%	79	38%	19	47.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP11A	23250	genome.wustl.edu	37	13	113496633	113496633	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418678	+1	known	p.S558F	1.000	115	0%	213	45.5%	0	-	-	-	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
ATP11A	23250	genome.wustl.edu	37	13	113530182	113530182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.I1085T	0.543	7	0.000	52	0.385	1	100%	benign(0.005)	tolerated(0.55)	neutral(0.007)	superfamily_Calcium ATPase transmembrane domain M
MCF2L	23263	genome.wustl.edu	37	13	113729360	113729360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112732.1	+1	validated	p.I446V	0.995	7	0.000	24	0.333	13	84.6%	benign(0.009)	tolerated(0.22)	neutral(0.043)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR4Q3	441669	genome.wustl.edu	37	14	20215836	20215836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172194.1	+1	provisional	p.G84R	0.000	91	0%	69	42%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_7tm_1,superfamily_SSF81321
OR11G2	390439	genome.wustl.edu	37	14	20666164	20666164	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005503.1	+1	provisional	p.T224A	0.892	124	0%	202	44.6%	0	-	benign(0)	tolerated(0.49)	neutral(0.011)	HMMPfam_7tm_1,superfamily_SSF81321
CCNB1IP1	57820	genome.wustl.edu	37	14	20779873	20779873	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021178.3	-1	validated	p.R224*	0.963	41	0%	184	40.2%	221	48.8%	-	-	-	NULL
METTL17	64745	genome.wustl.edu	37	14	21462138	21462138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029991.1	+1	validated	p.S205R	0.920	39	0%	109	39.4%	31	38.7%	benign(0.007)	tolerated(0.56)	neutral(0.006)	HMMPfam_Rsm22,superfamily_SSF53335
RPGRIP1	57096	genome.wustl.edu	37	14	21793105	21793105	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020366.3	+1	reviewed	p.A697	0.972	54	0%	88	36.4%	0	-	-	-	-	NULL
CHD8	57680	genome.wustl.edu	37	14	21868739	21868739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.G1189E	1.000	57	0%	59	49.2%	1	0%	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CHD8	57680	genome.wustl.edu	37	14	21870573	21870573	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.F989L	1.000	51	0%	73	38.4%	4	50%	benign(0.31)	tolerated(0.09)	neutral(0.393)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000252492	0	genome.wustl.edu	37	14	22069938	22069938	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000516683	-1	novel	NULL	0.003	14	0%	22	36.4%	0	-	-	-	-	-
MMP14	4323	genome.wustl.edu	37	14	23313604	23313604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004995.2	+1	reviewed	p.N346D	1.000	19	0%	107	41.1%	9	22.2%	benign(0)	tolerated(0.58)	neutral(0.005)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
PRMT5	10419	genome.wustl.edu	37	14	23391451	23391451	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006109.3	-1	validated	e16-2	1.000	78	0%	110	55.5%	0	-	-	-	-	-
MYH7	4625	genome.wustl.edu	37	14	23894063	23894063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.K865R	1.000	47	0%	102	36.3%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	NULL
MYH7	4625	genome.wustl.edu	37	14	23898166	23898166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.D469Y	1.000	18	0%	67	50.7%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
DHRS2	10202	genome.wustl.edu	37	14	24108440	24108440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182908.4	+1	validated	p.I65V	0.706	11	0%	30	40%	0	-	benign(0.002)	tolerated(0.63)	neutral(0.004)	HMMPfam_adh_short,superfamily_NAD(P)-bd
TGM1	7051	genome.wustl.edu	37	14	24724455	24724455	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	p.S550	0.047	16	0%	59	20.3%	3	66.6%	-	-	-	superfamily_SSF54001
C14orf126	112487	genome.wustl.edu	37	14	31917508	31917508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080664.2	-1	validated	p.K112E	1.000	420	0%	316	42.7%	1	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMPfam_Tyr_Deacylase,superfamily_DTyrtRNA_deacyls
ARHGAP5	394	genome.wustl.edu	37	14	32561420	32561420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.M515I	1.000	67	0%	38	31.6%	0	-	benign(0.307)	tolerated(0.46)	neutral(0.107)	HMMPfam_FF,HMMSmart_SM00441
NPAS3	64067	genome.wustl.edu	37	14	34243594	34243594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173159.2	+1	reviewed	p.R289G	1.000	69	0%	42	52.4%	0	-	benign(0.318)	tolerated(0.46)	neutral(0.112)	NULL
NFKBIA	4792	genome.wustl.edu	37	14	35871985	35871985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020529.2	-1	reviewed	p.N210D	1.000	48	0%	170	53.5%	93	40.8%	benign(0.062)	tolerated(0.22)	neutral(0.046)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NKX2-8	26257	genome.wustl.edu	37	14	37050130	37050130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014360.2	-1	provisional	p.A233T	0.483	5	0.000	21	0.571	0	-	benign(0.03)	deleterious(0.01)	neutral(0.407)	NULL
SSTR1	6751	genome.wustl.edu	37	14	38679391	38679391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001049.2	+1	reviewed	p.E266G	1.000	22	0%	109	40.4%	0	-	benign(0.35)	tolerated(0.11)	neutral(0.383)	HMMPfam_7tm_1,superfamily_SSF81321
FAM179B	23116	genome.wustl.edu	37	14	45475279	45475279	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.R905*	0.995	66	0%	24	50%	0	-	-	-	-	superfamily_ARM repeat
RPS29	6235	genome.wustl.edu	37	14	50044564	50044564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030001.1	-1	reviewed	p.L57P	0.765	40	0%	67	44.8%	16	43.7%	unknown(0)	deleterious(0.02)	-	NULL
ARF6	382	genome.wustl.edu	37	14	50360902	50360902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001663.3	+1	reviewed	p.Y150H	1.000	9	0.000	62	0.484	48	47.9%	benign(0.087)	deleterious(0.01)	neutral(0.412)	HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
PYGL	5836	genome.wustl.edu	37	14	51372175	51372175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002863.4	-1	reviewed	p.N827D	1.000	230	0%	170	48.8%	37	40.5%	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_Phosphorylase,superfamily_SSF53756
PYGL	5836	genome.wustl.edu	37	14	51379814	51379814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002863.4	-1	reviewed	p.Q518R	1.000	15	0%	68	29.4%	4	25%	possibly_damaging(0.445)	tolerated(0.18)	neutral(0.201)	HMMPfam_Phosphorylase,superfamily_SSF53756
NID2	22795	genome.wustl.edu	37	14	52535604	52535604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.F37L	1.000	13	0%	28	46.4%	0	-	benign(0.002)	tolerated(0.23)	neutral(0.042)	NULL
CDKN3	1033	genome.wustl.edu	37	14	54886735	54886735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005192.3	+1	reviewed	p.R193Q	1.000	419	0%	174	43.1%	14	57.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00404,HMMPfam_CDKN3,superfamily_(Phosphotyrosine protein) phosphatases II
KTN1	3895	genome.wustl.edu	37	14	56115581	56115581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.N787T	0.244	156	0.6%	81	13.6%	2	0%	benign(0)	tolerated(0.21)	neutral(0.044)	superfamily_Spectrin repeat
KTN1	3895	genome.wustl.edu	37	14	56142613	56142613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079521.1	+1	validated	p.K1278E	1.000	173	0%	97	40.2%	105	40%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PSMA3	5684	genome.wustl.edu	37	14	58738595	58738595	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002788.2	+1	reviewed	p.S250	0.998	238	0%	93	50.5%	268	50.7%	-	-	-	NULL
JKAMP	51528	genome.wustl.edu	37	14	59951313	59951313	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016475.3	+1	validated	e1+2	0.999	16	0%	92	37%	2	50%	-	-	-	-
SIX1	6495	genome.wustl.edu	37	14	61115798	61115798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005982.3	-1	reviewed	p.L37P	1.000	5	0.000	33	0.455	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRKCH	5583	genome.wustl.edu	37	14	61995828	61995828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006255.3	+1	reviewed	p.E490G	1.000	48	0%	81	43.2%	5	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PLEKHH1	57475	genome.wustl.edu	37	14	68042666	68042666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020715.2	+1	validated	p.I766V	1.000	27	0%	45	53.3%	10	50%	benign(0.08)	tolerated(0.5)	neutral(0.015)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZFYVE26	23503	genome.wustl.edu	37	14	68256194	68256194	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.P959	0.749	34	0%	59	35.6%	0	-	-	-	-	NULL
GALNTL1	57452	genome.wustl.edu	37	14	69792697	69792697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020692.2	+1	validated	p.L174P	1.000	44	0%	118	44.9%	4	25%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GALNTL1	57452	genome.wustl.edu	37	14	69814803	69814803	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448469	+1	known	p.P541	0.001	9	0.000	44	0.409	0	-	-	-	-	NULL
PCNX	22990	genome.wustl.edu	37	14	71444579	71444579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014982.2	+1	validated	p.N509D	0.008	76	0%	86	43%	0	-	unknown(0)	tolerated(0.29)	-	NULL
RGS6	9628	genome.wustl.edu	37	14	72941351	72941351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004296.4	+1	validated	p.T213P	1.000	359	0%	183	44.8%	0	-	possibly_damaging(0.864)	tolerated(0.06)	deleterious(0.657)	NULL
KIAA0317	9870	genome.wustl.edu	37	14	75139623	75139623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039479.1	-1	validated	p.F445L	1.000	66	0%	85	43.5%	6	50%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	NULL
EIF2B2	8892	genome.wustl.edu	37	14	75475875	75475875	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014239.3	+1	reviewed	p.D347A	0.996	84	0%	145	44.8%	49	48.9%	benign(0.15)	deleterious(0.02)	neutral(0.396)	NULL
MLH3	27030	genome.wustl.edu	37	14	75508357	75508357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040108.1	-1	reviewed	p.F1142L	1.000	95	0%	150	48%	3	33.3%	benign(0.009)	tolerated(0.1)	neutral(0.287)	NULL
TTLL5	23093	genome.wustl.edu	37	14	76243107	76243107	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.A767	1.000	169	0.6%	122	49.2%	1	0%	-	-	-	NULL
POMT2	29954	genome.wustl.edu	37	14	77743823	77743823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013382.5	-1	reviewed	p.F717V	1.000	47	0%	100	45%	32	46.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GSTZ1	2954	genome.wustl.edu	37	14	77796116	77796116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145870.2	+1	reviewed	p.Q147R	1.000	37	0%	73	37%	80	41.2%	benign(0)	tolerated(0.46)	neutral(0.012)	superfamily_Glutathione S-transferase (GST) C-terminal domain
SAMD15	161394	genome.wustl.edu	37	14	77845165	77845165	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010860.1	+1	provisional	p.S468	0.004	106	0%	141	44%	0	-	-	-	-	NULL
TSHR	7253	genome.wustl.edu	37	14	81562996	81562996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000369.2	+1	reviewed	p.N187D	1.000	120	0%	97	46.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_L domain-like
GTF2A1	2957	genome.wustl.edu	37	14	81658908	81658908	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015859.2	-1	validated	p.E296	1.000	108	0%	92	43.5%	3	0%	-	-	-	HMMPfam_TFIIA
GALC	2581	genome.wustl.edu	37	14	88434718	88434718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000153.2	-1	reviewed	p.R290H	1.000	68	0%	51	31.4%	1	0%	possibly_damaging(0.722)	deleterious(0.02)	deleterious(0.645)	HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases
GALC	2581	genome.wustl.edu	37	14	88454517	88454517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000153.2	-1	reviewed	p.V100A	0.998	111	0%	189	43.9%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_59,superfamily_(Trans)glycosidases
PTPN21	11099	genome.wustl.edu	37	14	88936282	88936282	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007039.3	-1	reviewed	p.M995T	1.000	119	0%	126	43.7%	3	0%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ZC3H14	79882	genome.wustl.edu	37	14	89042224	89042224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024824.4	+1	validated	p.I355V	1.000	309	0%	151	37.7%	16	43.7%	possibly_damaging(0.916)	tolerated(0.09)	deleterious(0.663)	NULL
TTC8	123016	genome.wustl.edu	37	14	89336481	89336481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144596.2	+1	reviewed	p.A330T	1.000	61	0%	86	40.7%	20	60%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF48452
PSMC1	5700	genome.wustl.edu	37	14	90729701	90729701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002802.2	+1	reviewed	p.L65S	1.000	112	0%	93	32.3%	9	44.4%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
PSMC1	5700	genome.wustl.edu	37	14	90730065	90730065	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002802.2	+1	reviewed	p.E113	1.000	188	0%	110	41.8%	7	57.1%	-	-	-	NULL
BTBD7	55727	genome.wustl.edu	37	14	93708697	93708698	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.L1107fs	0.994:0.979	-	-	-	-	-	-	-	-	-	NULL
BTBD7	55727	genome.wustl.edu	37	14	93709303	93709303	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.G905	0.455	225	0%	202	43.1%	2	100%	-	-	-	NULL
UNC79	57578	genome.wustl.edu	37	14	94004334	94004334	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	e9-1	1.000	32	0%	39	43.6%	0	-	-	-	-	-
UNC79	57578	genome.wustl.edu	37	14	94173108	94173108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.H2412R	1.000	50	0%	70	48.6%	0	-	benign(0.002)	tolerated(0.3)	neutral(0.029)	NULL
PPP4R4	57718	genome.wustl.edu	37	14	94708236	94708236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058237.1	+1	reviewed	p.I363T	0.993	126	0%	76	36.8%	0	-	benign(0)	tolerated(1)	-	superfamily_ARM repeat
PPP4R4	57718	genome.wustl.edu	37	14	94722796	94722796	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058237.1	+1	reviewed	e17-1	1.000	188	0%	96	38.5%	0	-	-	-	-	-
DICER1	23405	genome.wustl.edu	37	14	95592956	95592956	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.V288	0.926	114	0%	154	37.7%	0	-	-	-	-	superfamily_SSF52540
DYNC1H1	1778	genome.wustl.edu	37	14	102453820	102453820	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.I857V	1.000	50	0%	62	40.3%	0	-	benign(0.003)	tolerated(0.42)	neutral(0.014)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102457885	102457885	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.I964L	1.000	66	0%	71	56.3%	0	-	benign(0.001)	tolerated(0.62)	neutral(0.004)	NULL
ZNF839	55778	genome.wustl.edu	37	14	102807909	102807909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018335.3	+1	validated	p.E726G	0.001	27	0%	39	30.8%	38	73.6%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
TECPR2	9895	genome.wustl.edu	37	14	102843279	102843279	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	e1+2	1.000	23	0%	37	37.8%	0	-	-	-	-	-
RCOR1	23186	genome.wustl.edu	37	14	103187377	103187377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015156.2	+1	validated	p.K360E	1.000	120	0%	73	28.8%	1	100%	benign(0.183)	tolerated(0.32)	neutral(0.041)	NULL
CDC42BPB	9578	genome.wustl.edu	37	14	103410364	103410364	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006035.3	-1	reviewed	p.F1424	1.000	34	0%	77	40.3%	7	14.2%	-	-	-	HMMPfam_CNH,HMMSmart_CNH
CDC42BPB	9578	genome.wustl.edu	37	14	103412820	103412820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006035.3	-1	reviewed	p.T1245A	0.019	26	0%	62	43.5%	5	20%	benign(0)	tolerated(0.79)	neutral(0.001)	HMMPfam_CNH,HMMSmart_CNH
EIF5	1983	genome.wustl.edu	37	14	103802255	103802255	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001969.3	+1	validated	p.R20S	1.000	68	0%	268	43.3%	16	25%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
ZFYVE21	79038	genome.wustl.edu	37	14	104198997	104198997	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024071.2	+1	provisional	p.T189	0.019	24	0%	119	46.2%	61	49.1%	-	-	-	NULL
IGHV6-1	28385	genome.wustl.edu	37	14	106405792	106405792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390593	-1	known	p.Q61R	1.000	74	0%	109	36.7%	2	0%	possibly_damaging(0.849)	deleterious(0.02)	deleterious(0.709)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
NIPA2	81614	genome.wustl.edu	37	15	23021315	23021315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.Y8H	1.000	165	0%	213	39.9%	1	0%	possibly_damaging(0.747)	tolerated(0.08)	deleterious(0.574)	HMMPfam_DUF803
NDN	4692	genome.wustl.edu	37	15	23931749	23931749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002487.2	-1	reviewed	p.R206G	0.518	4	0.000	19	0.474	3	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_MAGE
C15orf2	23742	genome.wustl.edu	37	15	24923229	24923229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.T739A	0.000	38	0%	145	37.2%	0	-	benign(0.025)	-	-	NULL
GABRG3	2567	genome.wustl.edu	37	15	27573957	27573957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033223.4	+1	validated	p.T166A	1.000	20	0%	63	20.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HERC2	8924	genome.wustl.edu	37	15	28359943	28359943	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.D4576	1.000	31	0%	150	45.3%	22	50%	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HERC2	8924	genome.wustl.edu	37	15	28499609	28499609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.A976V	0.985	216	0%	328	49.4%	0	-	probably_damaging(0.989)	tolerated(0.27)	deleterious(0.473)	NULL
TJP1	7082	genome.wustl.edu	37	15	30026507	30026507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.V496A	1.000	260	0%	299	42.5%	3	0%	possibly_damaging(0.889)	deleterious(0)	deleterious(0.794)	superfamily_SH3-domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MIR211	406993	genome.wustl.edu	37	15	31357268	31357268	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384969	-1	known	NULL	1.000	58	0%	73	43.8%	0	-	-	-	-	-
AVEN	57099	genome.wustl.edu	37	15	34158856	34158856	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020371.2	-1	validated	p.T349	0.395	372	0.5%	291	47.8%	7	14.2%	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34647757	34647757	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.G488	0.393	30	0%	117	46.2%	0	-	-	-	-	NULL
PLCB2	5330	genome.wustl.edu	37	15	40585142	40585142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004573.2	-1	validated	p.N771D	0.664	37	0%	155	34.2%	6	0%	benign(0)	tolerated(0.65)	neutral(0.003)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PLCB2	5330	genome.wustl.edu	37	15	40594542	40594542	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004573.2	-1	validated	p.A127	0.989	15	0%	46	45.7%	2	0%	-	-	-	NULL
CASC5	57082	genome.wustl.edu	37	15	40937892	40937892	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170589.3	+1	validated	p.S2002	0.993	146	0%	85	40%	0	-	-	-	-	NULL
RAD51	5888	genome.wustl.edu	37	15	40993345	40993345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002875.4	+1	reviewed	p.K57N	1.000	122	0%	150	46%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Rad51 N-terminal domain-like
EXD1	161829	genome.wustl.edu	37	15	41508949	41508949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152596.2	-1	provisional	p.D44G	0.714	118	0%	137	43.8%	0	-	benign(0.147)	deleterious(0.03)	neutral(0.378)	NULL
RHOV	171177	genome.wustl.edu	37	15	41555024	41555024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007236.4	+1	reviewed	p.K98E	1.000	90	0%	104	53.8%	14	42.8%	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_EF-hand
MIR627	693212	genome.wustl.edu	37	15	42491838	42491838	+	RNA	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384979	-1	known	NULL	0.032	102	0%	56	39.3%	0	-	-	-	-	-
TMEM87A	25963	genome.wustl.edu	37	15	42519082	42519082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015497.3	-1	validated	p.D442G	1.000	23	0%	43	34.9%	7	57.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Lung_7-TM_R
ZFP106	64397	genome.wustl.edu	37	15	42731630	42731630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022473.1	-1	provisional	p.K1359R	1.000	48	0%	67	44.8%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
UBR1	197131	genome.wustl.edu	37	15	43237582	43237582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174916.2	-1	reviewed	p.A1732D	1.000	91	0%	157	49%	9	44.4%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	NULL
DUOXA1	90527	genome.wustl.edu	37	15	45411397	45411397	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144565.2	-1	provisional	p.S313	0.191	29	0%	75	30.7%	0	-	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48063429	48063429	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.N890T	0.422	39	0%	38	52.6%	0	-	benign(0)	tolerated(0.99)	-	NULL
SLC24A5	283652	genome.wustl.edu	37	15	48434514	48434514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205850.2	+1	reviewed	p.I490T	1.000	73	0%	91	40.7%	13	46.1%	possibly_damaging(0.541)	deleterious(0.01)	deleterious(0.589)	NULL
SLC12A1	6557	genome.wustl.edu	37	15	48594976	48594976	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000338.2	+1	reviewed	p.I1065R	1.000	161	0%	202	40.1%	0	-	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	NULL
FBN1	2200	genome.wustl.edu	37	15	48773890	48773890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.M1309T	1.000	129	0%	144	38.2%	0	-	benign(0.122)	tolerated(0.29)	neutral(0.039)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
COPS2	9318	genome.wustl.edu	37	15	49420243	49420243	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143887.1	-1	validated	p.D419E	1.000	122	0%	114	33.3%	59	49.1%	benign(0.001)	tolerated(0.68)	neutral(0.002)	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
COPS2	9318	genome.wustl.edu	37	15	49426252	49426252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143887.1	-1	validated	p.D264Y	1.000	165	0%	101	35.6%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00753,superfamily_TPR-like
USP8	9101	genome.wustl.edu	37	15	50788200	50788200	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128610.1	+1	validated	p.T938	0.995	34	0%	15	46.7%	2	100%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
AP4E1	23431	genome.wustl.edu	37	15	51250805	51250805	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007347.3	+1	validated	p.I555	0.955	106	0%	57	36.8%	0	-	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
DMXL2	23312	genome.wustl.edu	37	15	51780829	51780829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.S1656Y	1.000	141	0%	101	38.6%	1	0%	unknown(0)	deleterious(0)	-	NULL
PIGB	9488	genome.wustl.edu	37	15	55647491	55647491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004855.4	+1	reviewed	p.S509N	0.001	78	0%	51	41.2%	46	39.1%	benign(0.009)	tolerated(0.54)	neutral(0.008)	NULL
RFX7	64864	genome.wustl.edu	37	15	56385597	56385597	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.S1443	0.982	208	0%	108	51.9%	4	75%	-	-	-	NULL
ZNF280D	54816	genome.wustl.edu	37	15	56993235	56993235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017661.2	-1	validated	p.Y93H	1.000	116	0%	106	34%	13	46.1%	possibly_damaging(0.921)	tolerated(0.43)	neutral(0.385)	NULL
MYO1E	4643	genome.wustl.edu	37	15	59548563	59548563	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004998.2	-1	validated	p.N84K	1.000	109	0%	99	44.4%	2	0%	probably_damaging(0.988)	tolerated(0.14)	deleterious(0.687)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO1E	4643	genome.wustl.edu	37	15	59548571	59548571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004998.2	-1	validated	p.Y82H	1.000	98	0%	91	47.3%	2	100%	possibly_damaging(0.505)	tolerated(0.1)	neutral(0.456)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
BNIP2	663	genome.wustl.edu	37	15	59972498	59972498	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004330.2	-1	reviewed	p.P141	1.000	106	0.9%	149	44.3%	4	0%	-	-	-	NULL
USP3	9960	genome.wustl.edu	37	15	63852161	63852161	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006537.2	+1	validated	p.D213	0.049	34	0%	58	34.5%	3	100%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ENSG00000247530	0	genome.wustl.edu	37	15	63880450	63880450	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499437	-1	known	NULL	0.000	90	0%	35	42.9%	0	-	-	-	-	-
HERC1	8925	genome.wustl.edu	37	15	64004979	64004979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.A1527T	0.440	45	0%	68	35.3%	1	0%	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
PLEKHO2	80301	genome.wustl.edu	37	15	65157404	65157404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025201.4	+1	validated	p.S264G	0.410	12	0%	24	41.7%	5	40%	benign(0.071)	tolerated(0.21)	neutral(0.049)	NULL
CLPX	10845	genome.wustl.edu	37	15	65443200	65443200	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006660.3	-1	provisional	p.E621D	0.992	106	0%	105	40%	14	42.8%	possibly_damaging(0.942)	tolerated(0.14)	deleterious(0.637)	NULL
DENND4A	10260	genome.wustl.edu	37	15	65994134	65994134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.D842G	1.000	80	0%	64	37.5%	2	0%	benign(0.075)	tolerated(0.08)	neutral(0.305)	HMMPfam_PPR
TLE3	7090	genome.wustl.edu	37	15	70350624	70350624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005078.2	-1	validated	p.K309E	1.000	27	0%	207	43%	7	28.5%	possibly_damaging(0.585)	deleterious(0.04)	deleterious(0.550)	NULL
UACA	55075	genome.wustl.edu	37	15	70961253	70961253	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018003.2	-1	validated	p.R590	0.319	376	0%	244	35.7%	4	50%	-	-	-	NULL
NR2E3	10002	genome.wustl.edu	37	15	72103888	72103888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014249.2	+1	reviewed	p.Y62H	1.000	10	0%	32	43.8%	2	50%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
MYO9A	4649	genome.wustl.edu	37	15	72189928	72189928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	p.N1639T	0.190	232	0%	106	42.5%	0	-	benign(0.002)	tolerated(0.14)	neutral(0.249)	NULL
MYO9A	4649	genome.wustl.edu	37	15	72208709	72208709	+	Splice_Site	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006901.2	-1	validated	e18+2	1.000	112	0%	108	43.5%	0	-	-	-	-	-
EDC3	80153	genome.wustl.edu	37	15	74927865	74927865	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142443.1	-1	validated	p.N359	1.000	34	0%	84	36.9%	14	42.8%	-	-	-	HMMPfam_YjeF_N,superfamily_YjeF N-terminal domain-like
CYP1A2	1544	genome.wustl.edu	37	15	75044590	75044590	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000761.3	+1	reviewed	e4+2	1.000	28	0%	116	49.1%	0	-	-	-	-	-
COMMD4	54939	genome.wustl.edu	37	15	75631359	75631359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017828.3	+1	validated	p.L72P	1.000	13	0%	59	49.2%	114	39.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_HCaRG
CSPG4	1464	genome.wustl.edu	37	15	75968651	75968651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001897.4	-1	reviewed	p.A2070V	1.000	12	0%	22	54.5%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
ODF3L1	161753	genome.wustl.edu	37	15	76019677	76019677	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175881.3	+1	provisional	p.P207	0.036	15	0%	71	56.3%	2	50%	-	-	-	HMMPfam_DUF1309
SCAPER	49855	genome.wustl.edu	37	15	76866516	76866516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020843.2	-1	validated	p.R940G	0.998	125	0%	96	47.9%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
IREB2	3658	genome.wustl.edu	37	15	78768616	78768616	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004136.2	+1	validated	p.T370	1.000	190	0%	257	41.2%	0	-	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
ANKRD34C	390616	genome.wustl.edu	37	15	79587035	79587035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343327.1	+1	model	p.L470P	0.998	87	0%	139	43.2%	0	-	benign(0)	tolerated(1)	-	NULL
KIAA1024	23251	genome.wustl.edu	37	15	79749400	79749400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015206.2	+1	validated	p.F304C	1.000	38	0%	80	42.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81173336	81173336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.L159P	1.000	65	0%	70	44.3%	2	100%	probably_damaging(0.996)	tolerated(0.06)	deleterious(0.784)	HMMPfam_G8
C15orf26	161502	genome.wustl.edu	37	15	81436010	81436010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173528.2	+1	predicted	p.L162S	0.997	64	0%	101	48.5%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EFTUD1	79631	genome.wustl.edu	37	15	82519823	82519823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024580.5	-1	validated	p.S387Y	1.000	142	0%	96	41.7%	2	50%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	superfamily_Translation proteins
ALPK3	57538	genome.wustl.edu	37	15	85383121	85383121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.K406R	0.986	8	0.000	30	0.433	2	50%	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
NTRK3	4916	genome.wustl.edu	37	15	88576141	88576141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.I511T	1.000	10	0%	31	32.3%	1	0%	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
ISG20	3669	genome.wustl.edu	37	15	89182826	89182826	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002201.4	+1	provisional	e1+1	1.000	7	0.000	19	0.474	0	-	-	-	-	-
FANCI	55215	genome.wustl.edu	37	15	89837159	89837159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113378.1	+1	reviewed	p.M796T	0.000	171	0%	219	36.5%	3	33.3%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
POLG	5428	genome.wustl.edu	37	15	89866735	89866735	+	Missense_Mutation	SNP	C	C	T	rs185645212	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.R722H	0.002	25	0%	90	48.9%	9	44.4%	benign(0.297)	tolerated(0.15)	neutral(0.333)	superfamily_SSF56672
POLG	5428	genome.wustl.edu	37	15	89872302	89872302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.M299V	1.000	26	0%	131	43.5%	8	37.5%	benign(0.002)	tolerated(0.82)	neutral(0.001)	NULL
ANPEP	290	genome.wustl.edu	37	15	90347018	90347018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.D433Y	1.000	17	0%	91	46.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M1,superfamily_SSF55486
FES	2242	genome.wustl.edu	37	15	91433712	91433712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002005.3	+1	reviewed	p.S440P	1.000	8	0.000	21	0.381	10	50%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
HDDC3	374659	genome.wustl.edu	37	15	91475039	91475039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198527.2	-1	provisional	p.R102G	1.000	24	0%	144	47.9%	18	55.5%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMSmart_HDc,HMMPfam_HD,superfamily_SSF109604
LOC100288997	100288997	genome.wustl.edu	37	15	91485735	91485735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343396.1	-1	model	p.S755G	0.048	38	0%	109	50.5%	8	25%	-	-	-	NULL
SLCO3A1	28232	genome.wustl.edu	37	15	92459583	92459583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013272.3	+1	validated	p.I181V	1.000	4	0.000	20	0.350	0	-	benign(0.073)	tolerated(0.98)	neutral(0.005)	HMMPfam_OATP,superfamily_MFS general substrate transporter
MCTP2	55784	genome.wustl.edu	37	15	94858793	94858793	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018349.3	+1	validated	p.L188	0.994	43	0%	126	49.2%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
OR4F15	390649	genome.wustl.edu	37	15	102358808	102358808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001674.1	+1	provisional	p.M140T	0.706	265	0%	130	46.9%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITFG3	83986	genome.wustl.edu	37	16	314832	314832	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424016	+1	known	p.A130D	1.000	11	0%	43	32.6%	68	51.4%	-	-	-	NULL
NME4	4833	genome.wustl.edu	37	16	449085	449085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005009.2	+1	validated	p.R63G	0.786	28	0%	107	43.9%	104	38.4%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_NDK,HMMSmart_SM00562,superfamily_Nucleoside diphosphate kinases
MSLNL	401827	genome.wustl.edu	37	16	819598	819598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025190.1	-1	provisional	p.A998T	0.001	12	0%	71	46.5%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
CHTF18	63922	genome.wustl.edu	37	16	847961	847961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022092.2	+1	validated	p.R972G	0.942	6	0.000	41	0.488	86	39.5%	probably_damaging(0.994)	tolerated(0.14)	deleterious(0.702)	NULL
C16orf42	115939	genome.wustl.edu	37	16	1399527	1399527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001410.2	-1	validated	p.C284R	0.001	23	0%	65	41.5%	55	14.5%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
IFT140	9742	genome.wustl.edu	37	16	1612023	1612023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.L721P	1.000	36	0%	96	45.8%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812626	2812626	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.R699	0.860	25	0%	54	40.7%	12	33.3%	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2815105	2815105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.K1526E	0.919	16	0%	69	43.5%	20	40%	unknown(0)	-	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7629782	7629782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145891.2	+1	reviewed	p.T112A	1.000	33	0%	74	40.5%	0	-	possibly_damaging(0.946)	tolerated(0.25)	neutral(0.427)	superfamily_SSF54928
TMEM186	25880	genome.wustl.edu	37	16	8890011	8890011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015421.3	-1	validated	p.F147C	1.000	40	0%	147	40.8%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PMM2	5373	genome.wustl.edu	37	16	8898699	8898699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000303.2	+1	reviewed	p.Q85R	1.000	354	0%	219	42%	4	0%	possibly_damaging(0.804)	deleterious(0.02)	deleterious(0.685)	HMMPfam_PMM,superfamily_HAD-like
LITAF	9516	genome.wustl.edu	37	16	11643525	11643525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136472.1	-1	reviewed	p.R152G	1.000	11	0%	18	27.8%	17	41.1%	benign(0.076)	tolerated(0.13)	neutral(0.258)	HMMSmart_SM00714,HMMPfam_zf-LITAF-like
ZC3H7A	29066	genome.wustl.edu	37	16	11850096	11850096	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014153.2	-1	provisional	p.V853	0.014	349	0%	219	39.3%	19	57.8%	-	-	-	NULL
ZC3H7A	29066	genome.wustl.edu	37	16	11868150	11868150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014153.2	-1	provisional	p.L282P	1.000	105	0%	99	39.4%	6	16.6%	possibly_damaging(0.893)	deleterious(0.01)	deleterious(0.758)	NULL
MKL2	57496	genome.wustl.edu	37	16	14307457	14307457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014048.3	+1	validated	p.V111A	1.000	101	0%	79	43%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_RPEL
MKL2	57496	genome.wustl.edu	37	16	14342791	14342791	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014048.3	+1	validated	p.P702	0.999	42	0%	68	44.1%	2	50%	-	-	-	NULL
BFAR	51283	genome.wustl.edu	37	16	14755803	14755803	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016561.2	+1	validated	p.R280G	0.161	74	0%	105	50.5%	4	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NOMO1	23420	genome.wustl.edu	37	16	14976456	14976456	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.G1011	0.944	38	0%	73	42.5%	19	15.7%	-	-	-	superfamily_Carboxypeptidase regulatory domain
SMG1	23049	genome.wustl.edu	37	16	18861568	18861568	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.N1758	0.875	120	0%	104	42.3%	3	66.6%	-	-	-	superfamily_ARM repeat
ACSM2B	348158	genome.wustl.edu	37	16	20565101	20565101	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105069.1	-1	validated	p.A246	0.981	33	0%	35	45.7%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
THUMPD1	55623	genome.wustl.edu	37	16	20748262	20748262	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017736.3	-1	validated	p.K334	0.156	218	0%	185	47%	7	71.4%	-	-	-	NULL
ERI2	112479	genome.wustl.edu	37	16	20809769	20809769	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142725.1	-1	validated	p.E451	0.153	78	0%	57	49.1%	0	-	-	-	-	NULL
ENSG00000217794	0	genome.wustl.edu	37	16	21559275	21559275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000403120	-1	known	p.V58D	0.005	254	0%	383	19.8%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
SCNN1G	6340	genome.wustl.edu	37	16	23224076	23224076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039.3	+1	reviewed	p.S458G	1.000	31	0%	74	47.3%	8	25%	benign(0.277)	tolerated(0.16)	neutral(0.089)	HMMPfam_ASC
COG7	91949	genome.wustl.edu	37	16	23424887	23424887	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153603.3	-1	reviewed	e10-2	0.997	51	0%	127	42.5%	2	100%	-	-	-	-
CACNG3	10368	genome.wustl.edu	37	16	24372681	24372681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006539.2	+1	reviewed	p.N149D	1.000	162	0%	86	44.2%	0	-	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	HMMPfam_PMP22_Claudin
RBBP6	5930	genome.wustl.edu	37	16	24573299	24573299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006910.4	+1	reviewed	p.L369P	0.996	129	0%	230	44.3%	2	50%	possibly_damaging(0.88)	deleterious(0.02)	deleterious(0.726)	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24802307	24802307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014494.2	+1	reviewed	p.G782R	0.991	34	0%	40	35%	0	-	possibly_damaging(0.829)	deleterious(0)	deleterious(0.759)	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27752211	27752211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.S865G	0.000	16	0%	41	51.2%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
XPO6	23214	genome.wustl.edu	37	16	28115883	28115883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015171.2	-1	provisional	p.F977S	1.000	16	0%	37	43.2%	47	44.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
ATXN2L	11273	genome.wustl.edu	37	16	28845875	28845875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148414.1	+1	reviewed	p.P765L	1.000	20	0%	60	45%	87	49.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GDPD3	79153	genome.wustl.edu	37	16	30119577	30119577	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024307.2	-1	validated	p.M259R	1.000	15	0%	53	35.8%	11	27.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
SRCAP	10847	genome.wustl.edu	37	16	30721017	30721017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.S273P	1.000	39	0%	98	49%	3	66.6%	unknown(0)	-	-	NULL
FUS	2521	genome.wustl.edu	37	16	31193542	31193542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354711	+1	known	p.T2I	0.001	46	0%	84	40.5%	0	-	-	-	-	NULL
C16orf58	64755	genome.wustl.edu	37	16	31503570	31503570	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022744.2	-1	validated	p.G393	0.721	8	0.000	50	0.440	25	48%	-	-	-	HMMPfam_DUF647
ITFG1	81533	genome.wustl.edu	37	16	47292635	47292635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030790.3	-1	provisional	p.V413A	0.998	262	0%	172	48.3%	3	33.3%	benign(0.002)	deleterious(0)	neutral(0.445)	superfamily_SSF69318
ITFG1	81533	genome.wustl.edu	37	16	47345184	47345184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030790.3	-1	provisional	p.D346G	1.000	113	0%	80	40%	3	0%	possibly_damaging(0.884)	deleterious(0)	deleterious(0.789)	superfamily_SSF69318
ABCC11	85320	genome.wustl.edu	37	16	48248819	48248819	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.S407	0.000	46	0%	95	41.1%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
LONP2	83752	genome.wustl.edu	37	16	48304097	48304097	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031490.2	+1	provisional	p.G385*	1.000	60	0%	49	49%	3	0%	-	-	-	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
RPGRIP1L	23322	genome.wustl.edu	37	16	53691410	53691410	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015272.2	-1	reviewed	p.T512	1.000	127	0%	96	55.2%	0	-	-	-	-	NULL
CES1	1066	genome.wustl.edu	37	16	55844476	55844476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025195.1	-1	reviewed	p.D424G	0.100	133	0%	120	33.3%	21	52.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
NLRC5	84166	genome.wustl.edu	37	16	57111276	57111276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.E1635A	0.003	11	0%	35	57.1%	34	47%	benign(0.138)	tolerated(0.54)	neutral(0.019)	HMMSmart_SM00368,HMMSmart_SM00367,superfamily_RNI-like
C16orf57	79650	genome.wustl.edu	37	16	58051270	58051270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024598.2	+1	validated	p.H179R	0.985	76	0%	193	46.6%	12	25%	probably_damaging(0.964)	tolerated(0.24)	neutral(0.444)	HMMPfam_HVSL
CNOT1	23019	genome.wustl.edu	37	16	58621772	58621772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016284.3	-1	validated	p.L74R	1.000	58	0%	132	37.9%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNU6-21	100302738	genome.wustl.edu	37	16	62221448	62221448	+	RNA	SNP	A	A	T	rs138000756	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384710	-1	known	NULL	0.167	53	0%	32	43.8%	0	-	-	-	-	-
CDH11	1009	genome.wustl.edu	37	16	64984670	64984670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001797.2	-1	reviewed	p.V632F	1.000	14	0%	17	58.8%	5	0%	unknown(0)	deleterious(0.01)	-	NULL
NAE1	8883	genome.wustl.edu	37	16	66842482	66842482	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003905.3	-1	reviewed	p.V424	0.989	179	0%	171	42.7%	38	34.2%	-	-	-	superfamily_Activating enzymes of the ubiquitin-like proteins
CES4A	283848	genome.wustl.edu	37	16	67034890	67034890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173815.4	+1	validated	p.L178P	0.807	5	0.000	31	0.419	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COesterase,superfamily_SSF53474
KCTD19	146212	genome.wustl.edu	37	16	67327902	67327902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100915.1	-1	provisional	p.Y588C	0.986	60	0%	204	45.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
CTCF	10664	genome.wustl.edu	37	16	67645354	67645354	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.T207P	1.000	52	0%	93	38.7%	2	100%	possibly_damaging(0.924)	tolerated(0.07)	deleterious(0.692)	NULL
ESRP2	80004	genome.wustl.edu	37	16	68265204	68265204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024939.2	-1	validated	p.K530E	1.000	15	0%	66	27.3%	24	58.3%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
NFAT5	10725	genome.wustl.edu	37	16	69726738	69726738	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138713.2	+1	reviewed	p.S1004R	1.000	70	0%	72	41.7%	2	50%	possibly_damaging(0.69)	deleterious(0)	deleterious(0.692)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70868035	70868035	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.T4477	0.001	72	0%	51	43.1%	2	100%	-	-	-	NULL
ZNF23	7571	genome.wustl.edu	37	16	71482554	71482554	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145911.1	-1	provisional	p.S458	0.017	121	0.8%	172	47.7%	31	70.9%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PHLPP2	23035	genome.wustl.edu	37	16	71682988	71682988	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.T1259	0.998	56	0%	70	47.1%	0	-	-	-	-	NULL
ZFHX3	463	genome.wustl.edu	37	16	72832266	72832266	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R1439*	1.000	41	0%	127	40.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CLEC18B	497190	genome.wustl.edu	37	16	74444603	74444603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000268492	-1	known	p.K8E	0.000	46	0%	305	16.1%	3	66.6%	-	-	-	NULL
FA2H	79152	genome.wustl.edu	37	16	74753032	74753032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024306.4	-1	reviewed	p.M214V	0.001	10	0%	36	36.1%	1	100%	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
BCAR1	9564	genome.wustl.edu	37	16	75267742	75267742	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	e6+2	1.000	8	0.000	63	0.365	0	-	-	-	-	-
BCAR1	9564	genome.wustl.edu	37	16	75276913	75276913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014567.3	-1	validated	p.M30V	1.000	15	0%	66	48.5%	3	33.3%	benign(0.03)	tolerated(0.16)	neutral(0.061)	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PKD1L2	114780	genome.wustl.edu	37	16	81208319	81208319	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378597	-1	known	p.P184	0.000	21	0%	60	38.3%	0	-	-	-	-	superfamily_Clathrin adaptor appendage domain
PIEZO1	9780	genome.wustl.edu	37	16	88787155	88787155	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451779	-1	known	p.E1427	0.152	87	0%	281	39.9%	1	0%	-	-	-	NULL
CBFA2T3	863	genome.wustl.edu	37	16	88958729	88958729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005187.4	-1	reviewed	p.T182A	1.000	20	0%	85	47.1%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_TAFH,HMMSmart_SM00549
ACSF3	197322	genome.wustl.edu	37	16	89199611	89199611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127214.1	+1	validated	p.Y436C	1.000	39	0%	100	52%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_SSF56801
CPNE7	27132	genome.wustl.edu	37	16	89655091	89655091	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014427.4	+1	reviewed	p.I387	0.786	11	0%	65	40%	0	-	-	-	-	HMMSmart_SM00327,superfamily_vWA-like
MYO1C	4641	genome.wustl.edu	37	17	1382019	1382019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080779.1	-1	reviewed	p.P368Q	1.000	11	0%	48	56.2%	19	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRPF8	10594	genome.wustl.edu	37	17	1554502	1554502	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.Y2251	1.000	14	0%	54	38.9%	302	41%	-	-	-	HMMPfam_PROCT
TSR1	55720	genome.wustl.edu	37	17	2238043	2238043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018128.4	-1	validated	p.Q235R	1.000	34	0%	105	46.7%	4	0%	possibly_damaging(0.736)	tolerated(1)	neutral(0.269)	HMMPfam_AARP2CN,HMMSmart_AARP2CN
SGSM2	9905	genome.wustl.edu	37	17	2274573	2274573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.E481K	1.000	5	0.000	30	0.367	19	47.3%	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
SPNS2	124976	genome.wustl.edu	37	17	4439616	4439616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001124758.1	+1	provisional	p.L501P	1.000	11	0%	65	32.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS_gen_substrate_transporter
ALOX15	246	genome.wustl.edu	37	17	4536481	4536481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001140.3	-1	validated	p.Y460H	1.000	30	0%	113	44.2%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
SLC25A11	8402	genome.wustl.edu	37	17	4842102	4842102	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003562.4	-1	validated	p.P139	1.000	16	0%	72	40.3%	40	45%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
KIF1C	10749	genome.wustl.edu	37	17	4904581	4904581	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.L83P	0.968	15	0%	75	42.7%	4	0%	possibly_damaging(0.901)	tolerated(0.21)	neutral(0.401)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
KIF1C	10749	genome.wustl.edu	37	17	4905794	4905794	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.R155	0.997	37	0%	105	42.9%	1	100%	-	-	-	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
USP6	9098	genome.wustl.edu	37	17	5049440	5049440	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.L764	1.000	292	0.3%	310	42.3%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
FAM64A	54478	genome.wustl.edu	37	17	6350937	6350937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019013.1	+1	provisional	p.H150R	0.000	9	0.000	36	0.417	2	100%	benign(0.099)	tolerated(0.88)	neutral(0.007)	HMMPfam_DUF1466
FAM64A	54478	genome.wustl.edu	37	17	6352705	6352705	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019013.1	+1	provisional	p.E222*	0.059	47	0%	164	14.6%	1	0%	-	-	-	HMMPfam_DUF1466
PITPNM3	83394	genome.wustl.edu	37	17	6375977	6375977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.A477T	0.998	22	0%	62	37.1%	1	0%	possibly_damaging(0.484)	tolerated(0.16)	neutral(0.220)	HMMPfam_DDHD
C17orf81	23587	genome.wustl.edu	37	17	7155868	7155868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015362.3	+1	validated	p.E16G	0.087	8	0.000	51	0.235	14	50%	possibly_damaging(0.949)	deleterious(0.03)	deleterious(0.758)	NULL
SHBG	6462	genome.wustl.edu	37	17	7535297	7535297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040.3	+1	reviewed	p.E272D	0.010	28	0%	88	40.9%	0	-	possibly_damaging(0.81)	tolerated(0.09)	deleterious(0.601)	superfamily_Concanavalin A-like lectins/glucanases
DNAH2	146754	genome.wustl.edu	37	17	7674100	7674100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.E1404G	1.000	34	0%	57	54.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
CHD3	1107	genome.wustl.edu	37	17	7803995	7803995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.N1034S	1.000	32	0%	91	34.1%	18	44.4%	benign(0.039)	-	-	HMMPfam_SNF2_N
CHD3	1107	genome.wustl.edu	37	17	7806042	7806042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.N1182D	1.000	73	0%	234	44%	38	55.2%	probably_damaging(1)	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CNTROB	116840	genome.wustl.edu	37	17	7847916	7847916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380262	+1	known	p.N565S	0.002	19	0%	51	43.1%	30	43.3%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
ALOX12B	242	genome.wustl.edu	37	17	7977001	7977001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139.2	-1	reviewed	p.K577E	1.000	21	0%	72	38.9%	2	100%	benign(0.006)	tolerated(0.07)	neutral(0.319)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
DNAH9	1770	genome.wustl.edu	37	17	11757424	11757424	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.K3204	1.000	55	0%	43	46.5%	0	-	-	-	-	NULL
ZNF18	7566	genome.wustl.edu	37	17	11881572	11881572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144680.2	-1	provisional	p.F451S	0.748	149	0%	86	43%	11	36.3%	possibly_damaging(0.728)	deleterious(0)	deleterious(0.710)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP2K4	6416	genome.wustl.edu	37	17	11984782	11984782	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003010.2	+1	reviewed	p.R110*	1.000	75	0%	70	47.1%	2	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
NCOR1	9611	genome.wustl.edu	37	17	15976751	15976751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006311.2	-1	reviewed	p.P1268L	0.993	140	0%	116	48.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF624	57547	genome.wustl.edu	37	17	16525866	16525866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020787.2	-1	validated	p.K778N	0.989	160	0.6%	207	45.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_C2H2 and C2HC zinc fingers
CCDC144A	9720	genome.wustl.edu	37	17	16631003	16631003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014695.1	+1	provisional	p.L685S	0.976	560	0%	278	30.2%	0	-	probably_damaging(0.976)	tolerated(0.36)	neutral(0.438)	NULL
KRT17P1	147228	genome.wustl.edu	37	17	16746227	16746227	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399211	-1	known	p.D273	0.883	23	0%	94	44.7%	0	-	-	-	-	superfamily_Prefoldin,HMMPfam_Filament
MPRIP	23164	genome.wustl.edu	37	17	17076018	17076018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.E773G	1.000	9	0.000	35	0.457	30	43.3%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
COPS3	8533	genome.wustl.edu	37	17	17150843	17150843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003653.2	-1	reviewed	p.L390P	1.000	94	0%	97	42.3%	67	46.2%	possibly_damaging(0.938)	deleterious(0)	deleterious(0.828)	NULL
FLII	2314	genome.wustl.edu	37	17	18151970	18151970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002018.2	-1	reviewed	p.Q695R	1.000	13	0%	64	50%	20	45%	possibly_damaging(0.947)	deleterious(0)	deleterious(0.835)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
MFAP4	4239	genome.wustl.edu	37	17	19290380	19290380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000395592	-1	known	p.K18E	0.000	4	0.000	28	0.357	0	-	unknown(0)	-	-	NULL
SPECC1	92521	genome.wustl.edu	37	17	20108893	20108893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033553.1	+1	validated	p.R511C	0.000	61	0%	63	58.7%	2	0%	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
KCNJ12	3768	genome.wustl.edu	37	17	21319602	21319602	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021012.4	+1	validated	p.Y316*	1.000	33	0%	92	15.2%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
POLDIP2	26073	genome.wustl.edu	37	17	26681587	26681587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015584.3	-1	reviewed	p.Y89H	1.000	28	0%	94	52.1%	15	60%	-	-	-	NULL
SPAG5	10615	genome.wustl.edu	37	17	26919674	26919674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006461.3	-1	reviewed	p.E196D	0.001	79	0%	117	37.6%	1	0%	benign(0)	tolerated(1)	-	NULL
PIPOX	51268	genome.wustl.edu	37	17	27380065	27380065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016518.2	+1	validated	p.N131D	0.975	43	0%	71	31%	1	100%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
MYO18A	399687	genome.wustl.edu	37	17	27401871	27401871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078471.3	-1	validated	p.D2028N	0.810	51	0%	226	40.3%	44	34%	benign(0.15)	deleterious(0.05)	neutral(0.358)	NULL
MYO18A	399687	genome.wustl.edu	37	17	27493891	27493891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078471.3	-1	validated	p.E23G	1.000	74	0%	130	36.2%	3	33.3%	benign(0.235)	deleterious(0.01)	neutral(0.429)	NULL
SSH2	85464	genome.wustl.edu	37	17	27963197	27963197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033389.2	-1	reviewed	p.E657G	1.000	45	0%	77	37.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC6A4	6532	genome.wustl.edu	37	17	28530338	28530338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045.4	-1	reviewed	p.L557P	1.000	99	1%	117	35.9%	0	-	possibly_damaging(0.912)	deleterious(0.01)	deleterious(0.769)	HMMPfam_SNF
ATAD5	79915	genome.wustl.edu	37	17	29161721	29161721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.R208G	1.000	53	0%	48	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29195412	29195412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.R1099G	1.000	274	0%	168	48.8%	2	50%	possibly_damaging(0.511)	deleterious(0.03)	deleterious(0.536)	superfamily_P-loop containing nucleoside triphosphate hydrolases
EVI2B	2124	genome.wustl.edu	37	17	29632596	29632596	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006495.3	-1	validated	p.F11C	0.997	158	0%	162	40.1%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SUZ12	23512	genome.wustl.edu	37	17	30325846	30325846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015355.2	+1	reviewed	p.R682C	1.000	54	0%	69	43.5%	4	25%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SPACA3	124912	genome.wustl.edu	37	17	31323885	31323885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173847.3	+1	provisional	p.S123N	0.989	14	0%	60	50%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
CCT6B	10693	genome.wustl.edu	37	17	33281539	33281539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006584.2	-1	reviewed	p.V139A	0.961	452	0%	260	42.7%	1	100%	benign(0.012)	tolerated(0.08)	neutral(0.300)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
FNDC8	54752	genome.wustl.edu	37	17	33448912	33448912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017559.2	+1	validated	p.I67T	0.009	39	0%	109	38.5%	0	-	benign(0.119)	tolerated(0.58)	neutral(0.014)	NULL
SLFN11	91607	genome.wustl.edu	37	17	33680430	33680430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.I616N	0.997	89	0%	137	25.5%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLFN13	146857	genome.wustl.edu	37	17	33768699	33768699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144682.5	-1	validated	p.G602V	0.998	86	0%	141	29.8%	9	88.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000174093	0	genome.wustl.edu	37	17	36357258	36357258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312412	-1	known	p.L332P	1.000	301	0%	373	11%	18	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
GPR179	440435	genome.wustl.edu	37	17	36482655	36482655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004334.2	-1	validated	p.F2266S	0.000	39	0%	76	40.8%	0	-	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
GPR179	440435	genome.wustl.edu	37	17	36483325	36483325	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004334.2	-1	validated	p.E2043*	0.024	74	0%	159	47.2%	0	-	-	-	-	NULL
CDK12	51755	genome.wustl.edu	37	17	37646908	37646908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016507.2	+1	validated	p.G677D	1.000	86	0%	92	47.8%	2	50%	unknown(0)	deleterious(0)	-	NULL
PSMD3	5709	genome.wustl.edu	37	17	38146041	38146041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	p.G246R	1.000	5	0.000	29	0.379	31	38.7%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMSmart_SM00753,superfamily_TPR-like
MED24	9862	genome.wustl.edu	37	17	38184193	38184193	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014815.3	-1	reviewed	p.N472	1.000	37	0%	148	37.8%	8	100%	-	-	-	NULL
MSL1	339287	genome.wustl.edu	37	17	38282492	38282492	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012241.1	+1	validated	p.N12	0.997	67	0%	174	45.4%	46	39.1%	-	-	-	NULL
TOP2A	7153	genome.wustl.edu	37	17	38573074	38573074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001067.2	-1	reviewed	p.R32I	1.000	750	0%	561	42.8%	0	-	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
KRT25	147183	genome.wustl.edu	37	17	38910671	38910671	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181534.3	-1	reviewed	p.N160T	1.000	41	0%	49	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT26	353288	genome.wustl.edu	37	17	38927448	38927448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181539.4	-1	reviewed	p.Q161R	0.822	46	0%	54	50%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Filament
KRT23	25984	genome.wustl.edu	37	17	39084545	39084545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015515.3	-1	reviewed	p.E289G	1.000	106	0%	117	37.6%	69	47.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Filament
KRT33A	3883	genome.wustl.edu	37	17	39503148	39503148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004138.2	-1	reviewed	p.L275P	1.000	44	0%	174	43.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
KRT15	3866	genome.wustl.edu	37	17	39670293	39670293	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002275.3	-1	reviewed	p.S451	0.451	64	0%	111	45.9%	0	-	-	-	-	NULL
BRCA1	672	genome.wustl.edu	37	17	41234570	41234570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007294.3	-1	reviewed	p.N1403S	1.000	92	0%	61	50.8%	2	50%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	NULL
NBR1	4077	genome.wustl.edu	37	17	41342673	41342673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005899.3	+1	reviewed	p.Y248C	0.921	62	0%	134	44%	8	37.5%	benign(0.091)	tolerated(0.17)	neutral(0.066)	HMMSmart_ZnF_ZZ
MPP2	4355	genome.wustl.edu	37	17	41958851	41958851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005374.3	-1	reviewed	p.N263I	1.000	17	0%	72	43.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
FAM171A2	284069	genome.wustl.edu	37	17	42433956	42433956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198475.2	-1	validated	p.G147V	1.000	4	0.000	25	0.480	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0560
NSF	4905	genome.wustl.edu	37	17	44791319	44791319	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006178.2	+1	validated	p.F576L	1.000	108	0%	122	45.1%	3	0%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C17orf57	124989	genome.wustl.edu	37	17	45517904	45517904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.L916I	0.006	157	0%	59	33.9%	0	-	benign(0.29)	-	-	NULL
KPNB1	3837	genome.wustl.edu	37	17	45755410	45755410	+	Splice_Site	SNP	A	A	G	rs113514851		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	e18-2	1.000	182	0%	147	38.8%	1	100%	-	-	-	-
PDK2	5164	genome.wustl.edu	37	17	48184163	48184163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002611.3	+1	provisional	p.I175V	0.998	28	0%	134	40.3%	11	9%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
PDK2	5164	genome.wustl.edu	37	17	48185540	48185540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002611.3	+1	provisional	p.I236V	0.902	37	0%	169	42%	7	42.8%	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
TMEM92	162461	genome.wustl.edu	37	17	48356591	48356591	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153229.2	+1	validated	p.T134	0.076	30	0%	76	51.3%	7	57.1%	-	-	-	NULL
MYCBPAP	84073	genome.wustl.edu	37	17	48594726	48594726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032133.4	+1	validated	p.K136E	0.092	81	0%	120	42.5%	0	-	possibly_damaging(0.868)	tolerated(0.07)	deleterious(0.656)	NULL
CACNA1G	8913	genome.wustl.edu	37	17	48653082	48653082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018896.3	+1	validated	p.L440P	1.000	13	0%	50	48%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LUC7L3	51747	genome.wustl.edu	37	17	48822025	48822025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006107.3	+1	reviewed	p.F182I	1.000	102	0%	76	51.3%	20	50%	unknown(0)	tolerated(0.46)	-	HMMPfam_LUC7
PCTP	58488	genome.wustl.edu	37	17	53851173	53851173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021213.2	+1	validated	p.L143P	0.106	10	0%	20	20%	6	0%	possibly_damaging(0.859)	tolerated(0.08)	deleterious(0.632)	HMMPfam_START,HMMSmart_SM00234,superfamily_Bet v1-like
ANKFN1	162282	genome.wustl.edu	37	17	54520211	54520211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153228.2	+1	validated	p.Q342R	0.993	94	0%	55	40%	0	-	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
BZRAP1	9256	genome.wustl.edu	37	17	56387932	56387932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.P1214S	0.003	5	0.000	19	0.368	18	61.1%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
CLTC	1213	genome.wustl.edu	37	17	57738935	57738935	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004859.3	+1	reviewed	p.L433	1.000	61	0%	34	47.1%	8	50%	-	-	-	superfamily_ARM repeat
HEATR6	63897	genome.wustl.edu	37	17	58147136	58147136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.Q292P	1.000	115	0%	193	48.2%	1	0%	unknown(0)	deleterious(0.04)	-	NULL
PPM1D	8493	genome.wustl.edu	37	17	58740479	58740479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.Q462*	0.972	44	0%	57	38.6%	7	57.1%	-	-	-	NULL
BRIP1	83990	genome.wustl.edu	37	17	59857756	59857756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.S601P	1.000	66	0%	50	34%	0	-	probably_damaging(0.996)	tolerated(0.07)	deleterious(0.780)	NULL
MRC2	9902	genome.wustl.edu	37	17	60757538	60757538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006039.3	+1	validated	p.Y769C	1.000	24	0%	144	37.5%	5	20%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
TANC2	26115	genome.wustl.edu	37	17	61498142	61498142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.Q1600R	1.000	15	0%	33	42.4%	0	-	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
FTSJ3	117246	genome.wustl.edu	37	17	61897653	61897653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017647.3	-1	reviewed	p.K740E	1.000	73	0%	157	50.3%	49	34.6%	benign(0.388)	deleterious(0.01)	deleterious(0.530)	HMMPfam_Spb1_C
SCN4A	6329	genome.wustl.edu	37	17	62019253	62019253	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.R1463	0.212	50	0%	82	48.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ERN1	2081	genome.wustl.edu	37	17	62145553	62145553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001433.3	-1	reviewed	p.Y193H	1.000	28	0%	66	56.1%	0	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564
PRKCA	5578	genome.wustl.edu	37	17	64738862	64738862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002737.2	+1	reviewed	p.D503G	1.000	66	0%	90	40%	1	0%	possibly_damaging(0.555)	deleterious(0.04)	deleterious(0.538)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PITPNC1	26207	genome.wustl.edu	37	17	65683182	65683182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181671.1	+1	reviewed	p.D228G	1.000	74	0%	58	31%	74	28.3%	benign(0)	tolerated(1)	-	HMMPfam_IP_trans,superfamily_SSF55961
NOL11	25926	genome.wustl.edu	37	17	65722742	65722742	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015462.3	+1	provisional	p.G277	0.912	36	0%	78	48.7%	3	33.3%	-	-	-	NULL
ABCA9	10350	genome.wustl.edu	37	17	67014722	67014722	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	e19-2	0.942	101	0%	53	47.2%	0	-	-	-	-	-
C17orf80	55028	genome.wustl.edu	37	17	71232499	71232499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017941.4	+1	validated	p.M293T	0.000	56	0%	97	41.2%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
CASKIN2	57513	genome.wustl.edu	37	17	73501922	73501922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020753.3	-1	validated	p.E272G	1.000	24	0%	128	48.4%	1	100%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	superfamily_Ankyrin repeat
ACOX1	51	genome.wustl.edu	37	17	73947627	73947627	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004035.6	-1	reviewed	p.T326P	1.000	46	0%	78	47.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_AcylCoADH_C_like
ST6GALNAC1	55808	genome.wustl.edu	37	17	74621989	74621989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018414.3	-1	validated	p.S506Y	1.000	21	0%	141	40.4%	7	57.1%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_Glyco_transf_29
TK1	7083	genome.wustl.edu	37	17	76170965	76170965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003258.4	-1	validated	p.S194P	0.000	7	0.000	75	0.467	27	37%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
USP36	57602	genome.wustl.edu	37	17	76794532	76794532	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.A1114	0.105	138	0%	252	35.3%	13	53.8%	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76798457	76798457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025090.3	-1	validated	p.S991P	0.000	10	0%	52	38.5%	7	42.8%	possibly_damaging(0.951)	tolerated(0.21)	neutral(0.438)	NULL
RNF213	57674	genome.wustl.edu	37	17	78320349	78320349	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.L2738	0.184	7	0.000	29	0.483	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
RPTOR	57521	genome.wustl.edu	37	17	78857725	78857725	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020761.2	+1	reviewed	p.S599R	1.000	5	0.000	31	0.516	1	0%	possibly_damaging(0.916)	tolerated(0.07)	deleterious(0.686)	HMMPfam_HEAT,superfamily_ARM repeat
GPS1	2873	genome.wustl.edu	37	17	80012391	80012391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212492.1	+1	reviewed	p.L145P	1.000	5	0.000	10	0.500	46	58.6%	benign(0.03)	tolerated(0.18)	neutral(0.058)	NULL
C17orf101	79701	genome.wustl.edu	37	17	80352205	80352205	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175902.4	-1	validated	e9+2	0.005	17	0%	73	32.9%	0	-	-	-	-	-
C17orf62	79415	genome.wustl.edu	37	17	80402347	80402347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033046.2	-1	validated	p.Q140R	1.000	22	0%	89	42.7%	120	38.3%	unknown(0)	-	-	NULL
TBCD	6904	genome.wustl.edu	37	17	80730377	80730377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005993.4	+1	reviewed	p.V211A	0.997	91	1.1%	268	41%	4	25%	possibly_damaging(0.903)	tolerated(0.5)	neutral(0.368)	superfamily_ARM repeat
ZNF750	79755	genome.wustl.edu	37	17	80788173	80788173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024702.2	-1	reviewed	p.M673V	0.001	24	0%	121	36.4%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2726478	2726478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.G910D	0.998	78	0%	35	45.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2729330	2729330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.S991G	0.924	185	0%	89	44.9%	1	100%	benign(0.001)	tolerated(1)	-	NULL
SMCHD1	23347	genome.wustl.edu	37	18	2762176	2762177	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015295.2	+1	validated	p.N1504fs	1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3193912	3193912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.L112S	0.916	122	0%	158	39.9%	0	-	possibly_damaging(0.527)	deleterious(0)	deleterious(0.623)	NULL
LAMA1	284217	genome.wustl.edu	37	18	6992661	6992661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005559.2	-1	validated	p.N1689K	0.005	219	0%	141	44%	0	-	possibly_damaging(0.825)	tolerated(0.47)	neutral(0.324)	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I
PPP4R1	9989	genome.wustl.edu	37	18	9588141	9588141	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042388.1	-1	validated	p.L177	0.956	30	0%	40	57.5%	7	57.1%	-	-	-	superfamily_ARM repeat
TUBB6	84617	genome.wustl.edu	37	18	12325590	12325590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032525.1	+1	provisional	p.P268S	1.000	9	0.000	37	0.378	8	0%	benign(0.068)	deleterious(0)	neutral(0.449)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
CEP192	55125	genome.wustl.edu	37	18	13049107	13049107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032142.3	+1	validated	p.S177G	1.000	120	0%	73	43.8%	0	-	benign(0.247)	tolerated(0.34)	neutral(0.048)	NULL
RNMT	8731	genome.wustl.edu	37	18	13734532	13734532	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003799.1	+1	provisional	p.K163*	0.980	293	0.3%	260	46.2%	0	-	-	-	-	HMMPfam_Pox_MCEL
POTEC	388468	genome.wustl.edu	37	18	14511769	14511769	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444806	-1	known	p.N585K	0.016	396	0%	124	32.3%	0	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14828290	14828290	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.S800	0.237	130	0%	95	45.3%	0	-	-	-	-	NULL
ESCO1	114799	genome.wustl.edu	37	18	19147946	19147946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052911.2	-1	validated	p.F547S	1.000	63	0%	70	52.9%	3	66.6%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
ZNF521	25925	genome.wustl.edu	37	18	22805107	22805107	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015461.2	-1	validated	p.L925	1.000	148	0%	98	41.8%	1	0%	-	-	-	NULL
DSG4	147409	genome.wustl.edu	37	18	28989448	28989448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134453.1	+1	reviewed	p.K656R	1.000	30	0%	100	37%	0	-	probably_damaging(0.965)	deleterious(0.02)	deleterious(0.790)	NULL
DSG2	1829	genome.wustl.edu	37	18	29116235	29116235	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.T498	0.003	88	0%	34	44.1%	0	-	-	-	-	superfamily_Cadherin
DSG2	1829	genome.wustl.edu	37	18	29126623	29126623	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.E1092*	0.273	49	0%	42	42.9%	6	50%	-	-	-	NULL
TRAPPC8	22878	genome.wustl.edu	37	18	29444733	29444733	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014939.3	-1	validated	p.L868	0.978	138	0%	63	30.2%	1	0%	-	-	-	NULL
C18orf34	374864	genome.wustl.edu	37	18	30846939	30846939	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105528.1	-1	validated	p.T450	0.011	201	0%	110	44.5%	0	-	-	-	-	NULL
ASXL3	80816	genome.wustl.edu	37	18	31323701	31323701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.P1297T	1.000	58	0%	64	37.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DTNA	1837	genome.wustl.edu	37	18	32335965	32335965	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001390.4	+1	reviewed	p.G9*	1.000	175	0%	156	42.9%	0	-	-	-	-	NULL
MOCOS	55034	genome.wustl.edu	37	18	33800073	33800073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017947.2	+1	validated	p.V618A	1.000	48	0%	69	36.2%	4	25%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_MOSC_N,superfamily_PK beta-barrel domain-like
SYT4	6860	genome.wustl.edu	37	18	40853691	40853691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020783.3	-1	validated	p.E235*	1.000	178	0%	69	37.7%	0	-	-	-	-	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SETBP1	26040	genome.wustl.edu	37	18	42529864	42529864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015559.2	+1	validated	p.K187E	1.000	29	0%	56	42.9%	0	-	probably_damaging(0.996)	tolerated(0.1)	deleterious(0.748)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42532672	42532672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015559.2	+1	validated	p.M1123V	1.000	41	0%	37	35.1%	0	-	possibly_damaging(0.891)	tolerated(0.11)	deleterious(0.622)	NULL
HAUS1	115106	genome.wustl.edu	37	18	43698200	43698200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138443.3	+1	validated	p.L87F	0.996	112	0%	143	39.9%	15	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44137348	44137348	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144612.6	-1	reviewed	p.I829M	0.989	71	0%	182	43.4%	0	-	benign(0.429)	deleterious(0.01)	deleterious(0.545)	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
MYO5B	4645	genome.wustl.edu	37	18	47404157	47404157	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.T1124	0.003	160	0%	133	33.8%	1	0%	-	-	-	NULL
ELAC1	55520	genome.wustl.edu	37	18	48510509	48510509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018696.2	+1	validated	p.H67Q	0.990	52	0%	52	44.2%	1	100%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_Lactamase_B,superfamily_SSF56281
C18orf54	162681	genome.wustl.edu	37	18	51900604	51900604	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173529.4	+1	validated	p.S332	0.971	85	0%	45	33.3%	0	-	-	-	-	NULL
TCF4	6925	genome.wustl.edu	37	18	52927190	52927190	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083962.1	-1	reviewed	p.P353	0.159	127	0%	81	45.7%	1	0%	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56171353	56171353	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.R2019	0.960	75	0%	80	50%	1	0%	-	-	-	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
ALPK2	115701	genome.wustl.edu	37	18	56246698	56246698	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.Q437P	0.784	78	0%	99	62.6%	0	-	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	NULL
ALPK2	115701	genome.wustl.edu	37	18	56247586	56247586	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.D141V	0.002	445	0%	274	35%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
CPLX4	339302	genome.wustl.edu	37	18	56985537	56985537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181654.3	-1	reviewed	p.I53S	1.000	240	0.4%	243	49%	0	-	benign(0.155)	deleterious(0.03)	neutral(0.378)	NULL
SERPINB4	6318	genome.wustl.edu	37	18	61310452	61310452	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002974.2	-1	validated	e2-1	0.815	175	0%	89	43.8%	0	-	-	-	-	-
HMSD	284293	genome.wustl.edu	37	18	61621713	61621713	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123366.1	+1	validated	p.A48	0.002	167	0%	246	39%	1	0%	unknown(0)	-	-	HMMPfam_Serpin,superfamily_Serpins
CDH19	28513	genome.wustl.edu	37	18	64218473	64218473	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.K211	0.961	97	0%	99	40.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
SOCS6	9306	genome.wustl.edu	37	18	67992422	67992422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004232.3	+1	reviewed	p.K173T	1.000	22	0%	26	38.5%	6	50%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
NFATC1	4772	genome.wustl.edu	37	18	77170598	77170598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.R95K	0.998	10	0%	49	38.8%	0	-	probably_damaging(0.99)	tolerated(0.43)	neutral(0.455)	NULL
MIER2	54531	genome.wustl.edu	37	19	327892	327892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017550.1	-1	provisional	p.P114L	0.025	25	0%	133	42.1%	13	76.9%	benign(0.025)	deleterious(0.04)	neutral(0.350)	NULL
C19orf6	91304	genome.wustl.edu	37	19	1011471	1011471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033026.1	-1	validated	p.F371S	1.000	5	0.000	48	0.396	238	44.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Membralin
CNN2	1265	genome.wustl.edu	37	19	1032576	1032576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004368.2	+1	reviewed	p.F91L	1.000	25	0%	109	40.4%	46	30.4%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
SBNO2	22904	genome.wustl.edu	37	19	1120001	1120001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014963.2	-1	validated	p.K391E	1.000	14	0%	67	43.3%	30	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF555	148254	genome.wustl.edu	37	19	2853352	2853352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152791.4	+1	validated	p.G430V	1.000	67	0%	88	46.6%	2	0%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GIPC3	126326	genome.wustl.edu	37	19	3590066	3590066	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133261.2	+1	validated	p.T273S	0.986	5	0.000	62	0.452	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
C19orf29	58509	genome.wustl.edu	37	19	3623847	3623847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080543.1	-1	validated	p.E161K	1.000	11	0%	48	50%	6	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SH3GL1	6455	genome.wustl.edu	37	19	4365610	4365610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003025.2	-1	provisional	p.K67M	1.000	12	0%	104	47.1%	16	31.2%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	HMMPfam_BAR,HMMSmart_SM00721
CHAF1A	10036	genome.wustl.edu	37	19	4409033	4409033	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005483.2	+1	validated	p.C79	0.685	23	0%	92	47.8%	1	100%	-	-	-	NULL
DPP9	91039	genome.wustl.edu	37	19	4694700	4694700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.W497R	1.000	15	0%	48	29.2%	8	25%	benign(0.004)	tolerated(0.53)	neutral(0.007)	HMMPfam_DPPIV_N,superfamily_SSF82171
KDM4B	23030	genome.wustl.edu	37	19	5119850	5119850	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015015.2	+1	validated	p.A434	0.641	8	0.000	17	0.353	7	42.8%	-	-	-	NULL
SAFB	6294	genome.wustl.edu	37	19	5654435	5654435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002967.2	+1	reviewed	p.I575V	0.998	79	0%	158	46.2%	48	43.7%	benign(0.113)	tolerated(0.34)	neutral(0.032)	superfamily_SSF54928
HSD11B1L	374875	genome.wustl.edu	37	19	5687366	5687366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198533.1	+1	provisional	p.V161A	1.000	5	0.000	31	0.419	10	40%	benign(0.18)	tolerated(0.09)	neutral(0.313)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
RFX2	5990	genome.wustl.edu	37	19	6004311	6004311	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000635.3	-1	reviewed	e12-2	1.000	30	0%	129	39.5%	0	-	-	-	-	-
RFX2	5990	genome.wustl.edu	37	19	6013034	6013034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000635.3	-1	reviewed	p.M288V	1.000	9	0.000	28	0.464	2	0%	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
C3	718	genome.wustl.edu	37	19	6709834	6709834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000064.2	-1	reviewed	p.Q569R	0.000	12	0%	60	25%	6	0%	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_A2M_N_2
GPR108	56927	genome.wustl.edu	37	19	6731112	6731112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080452.1	-1	provisional	p.E482G	1.000	6	0.000	62	0.532	241	32.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lung_7-TM_R
VAV1	7409	genome.wustl.edu	37	19	6854092	6854092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	p.G823R	1.000	39	0%	53	37.7%	30	13.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_SSF55550
TIMM44	10469	genome.wustl.edu	37	19	8002915	8002915	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006351.3	-1	validated	p.K103	1.000	205	0%	349	41.3%	6	0%	-	-	-	NULL
MYO1F	4542	genome.wustl.edu	37	19	8612994	8612994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.E399K	1.000	46	0%	95	49.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC16	94025	genome.wustl.edu	37	19	8976370	8976370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.V14153A	0.000	28	0%	34	47.1%	2	0%	benign(0.06)	tolerated(0.06)	neutral(0.327)	HMMPfam_SEA,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9002590	9002590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.E13409G	0.022	47	0%	88	35.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_SEA,superfamily_SEA domain
MUC16	94025	genome.wustl.edu	37	19	9057358	9057358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.T10030A	0.001	66	0%	58	37.9%	0	-	unknown(0)	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9062561	9062561	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.P8295	0.000	60	0%	66	54.5%	0	-	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9072317	9072317	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.F5043	0.001	86	0%	141	40.4%	0	-	-	-	-	NULL
ZNF559	84527	genome.wustl.edu	37	19	9452636	9452636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032497.1	+1	provisional	p.N170T	0.001	93	0%	79	48.1%	1	100%	unknown(0)	tolerated(0.8)	-	superfamily_SSF57667
ZNF266	10781	genome.wustl.edu	37	19	9528583	9528583	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006631.2	-1	validated	p.G12	0.001	46	0%	95	42.1%	11	72.7%	-	-	-	HMMSmart_KRAB
ZNF560	147741	genome.wustl.edu	37	19	9578810	9578810	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152476.2	-1	validated	p.G271	0.002	148	0%	90	52.2%	0	-	-	-	-	NULL
ZNF121	7675	genome.wustl.edu	37	19	9677668	9677668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008727.2	-1	validated	p.C41R	0.000	141	0%	99	37.4%	3	66.6%	benign(0.275)	deleterious(0)	deleterious(0.474)	NULL
ZNF562	54811	genome.wustl.edu	37	19	9763921	9763921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130031.1	-1	validated	p.T329A	0.000	312	0%	177	40.7%	7	28.5%	benign(0.425)	tolerated(0.23)	neutral(0.180)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DNMT1	1786	genome.wustl.edu	37	19	10266538	10266538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130823.1	-1	reviewed	p.F495L	1.000	35	0%	55	38.2%	10	30%	benign(0.135)	tolerated(0.13)	neutral(0.264)	NULL
ZNF433	163059	genome.wustl.edu	37	19	12125804	12125804	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080411.1	-1	provisional	p.A626	0.379	96	0%	90	41.1%	24	41.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF20	7568	genome.wustl.edu	37	19	12246716	12246716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021143.2	-1	validated	p.F3I	0.457	109	0%	145	39.3%	0	-	possibly_damaging(0.701)	deleterious(0)	deleterious(0.697)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF442	79973	genome.wustl.edu	37	19	12461860	12461860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030824.2	-1	validated	p.R180H	0.005	265	0%	257	38.5%	0	-	probably_damaging(0.973)	deleterious(0.02)	deleterious(0.798)	superfamily_SSF57667
TNPO2	30000	genome.wustl.edu	37	19	12812983	12812983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136196.1	-1	validated	p.T772A	1.000	10	0%	19	68.4%	10	80%	benign(0.001)	tolerated(0.16)	neutral(0.059)	superfamily_ARM repeat
HOOK2	29911	genome.wustl.edu	37	19	12881974	12881974	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013312.2	-1	validated	p.R254	1.000	7	0.000	60	0.433	72	40.2%	-	-	-	HMMPfam_HOOK
CACNA1A	773	genome.wustl.edu	37	19	13563748	13563748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.K161E	1.000	62	0%	67	43.3%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZSWIM4	65249	genome.wustl.edu	37	19	13934299	13934299	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023072.2	+1	validated	p.L617M	1.000	11	0%	85	34.1%	4	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
MIR24-2	407013	genome.wustl.edu	37	19	13947110	13947110	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000386972	-1	known	NULL	1.000	13	0%	57	43.9%	0	-	-	-	-	-
PALM3	342979	genome.wustl.edu	37	19	14164598	14164598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145028.1	-1	validated	p.A614D	0.886	11	0%	79	35.4%	22	40.9%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	NULL
CD97	976	genome.wustl.edu	37	19	14516653	14516653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078481.2	+1	reviewed	p.I575F	1.000	12	0%	89	39.3%	20	40%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
PKN1	5585	genome.wustl.edu	37	19	14554393	14554393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213560.1	+1	reviewed	p.A151V	1.000	11	0%	79	16.5%	15	6.6%	possibly_damaging(0.498)	tolerated(0.23)	neutral(0.208)	HMMPfam_HR1,HMMSmart_SM00742,superfamily_HR1 repeat
ZNF333	84449	genome.wustl.edu	37	19	14829699	14829699	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032433.2	+1	validated	p.H520	0.004	27	0%	27	33.3%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
BRD4	23476	genome.wustl.edu	37	19	15366919	15366919	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058243.2	-1	reviewed	p.P569	0.953	926	0%	635	43%	14	28.5%	-	-	-	NULL
WIZ	58525	genome.wustl.edu	37	19	15534000	15534000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021241.2	-1	validated	p.W758R	1.000	6	0.000	73	0.384	33	36.3%	unknown(0)	deleterious(0)	-	HMMSmart_ZnF_C2H2
C19orf44	84167	genome.wustl.edu	37	19	16613940	16613940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032207.2	+1	validated	p.Q275R	0.000	37	0%	98	36.7%	1	0%	benign(0.002)	tolerated(0.87)	neutral(0.001)	NULL
NWD1	284434	genome.wustl.edu	37	19	16923565	16923565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.C1298R	0.976	118	0%	177	38.4%	0	-	possibly_damaging(0.686)	tolerated(0.06)	deleterious(0.568)	HMMSmart_SM00320,superfamily_WD40 repeat-like
IL12RB1	3594	genome.wustl.edu	37	19	18170864	18170864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.Q608R	0.666	15	0%	52	44.2%	1	0%	benign(0.29)	tolerated(0.08)	neutral(0.389)	NULL
TMEM161A	54929	genome.wustl.edu	37	19	19243314	19243314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017814.1	-1	provisional	p.L97P	1.000	37	0%	92	21.7%	24	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Tmemb_161AB
GATAD2A	54815	genome.wustl.edu	37	19	19576355	19576355	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017660.3	+1	provisional	p.T67	0.000	38	0%	50	38%	9	33.3%	-	-	-	NULL
ZNF43	7594	genome.wustl.edu	37	19	21990923	21990923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.K639R	0.004	97	0%	58	37.9%	2	50%	benign(0.023)	tolerated(0.59)	neutral(0.005)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991385	21991385	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.E485G	0.039	141	0%	115	47%	5	80%	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21991646	21991646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.Y398C	0.052	81	0%	66	37.9%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF681	148213	genome.wustl.edu	37	19	23926864	23926864	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138286.2	-1	validated	p.H496	0.402	79	0%	63	36.5%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000104777	0	genome.wustl.edu	37	19	24102429	24102429	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300996	-1	known	NULL	0.012	12	0%	15	53.3%	0	-	-	-	-	-
PLEKHF1	79156	genome.wustl.edu	37	19	30165158	30165158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024310.4	+1	validated	p.G138C	0.999	10	0%	22	45.5%	32	43.7%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_FYVE_PHD_ZnF
DPY19L3	147991	genome.wustl.edu	37	19	32954881	32954881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207325.2	+1	validated	p.K518E	0.999	119	0%	121	43%	0	-	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_DUF2211
DPY19L3	147991	genome.wustl.edu	37	19	32971458	32971458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207325.2	+1	validated	p.G662C	1.000	26	0%	31	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2211
CD22	933	genome.wustl.edu	37	19	35829216	35829216	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001771.3	+1	validated	p.T377	0.000	78	0%	137	49.6%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ENSG00000247203	0	genome.wustl.edu	37	19	36242986	36242986	+	RNA	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501632	-1	novel	NULL	0.000	6	0.000	21	0.524	0	-	-	-	-	-
WDR62	284403	genome.wustl.edu	37	19	36595509	36595509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083961.1	+1	validated	p.S1415G	0.012	16	0%	52	44.2%	4	50%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
ZNF566	84924	genome.wustl.edu	37	19	36939953	36939953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145343.1	-1	validated	p.Y396D	0.997	201	0.5%	99	44.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF57667
ZNF566	84924	genome.wustl.edu	37	19	36940277	36940277	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145343.1	-1	validated	p.E288*	0.691	122	0%	116	42.2%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF529	57711	genome.wustl.edu	37	19	37047085	37047085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145649.1	-1	validated	p.H10R	0.000	85	0%	126	48.4%	0	-	benign(0)	-	-	NULL
ZNF790	388536	genome.wustl.edu	37	19	37309641	37309641	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206894.2	-1	validated	p.V535	0.016	138	0%	66	54.5%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38102503	38102503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.S108G	0.000	161	0%	77	32.5%	1	0%	possibly_damaging(0.484)	tolerated(0.46)	neutral(0.173)	NULL
ZFP30	22835	genome.wustl.edu	37	19	38126904	38126904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014898.2	-1	validated	p.H180N	1.000	144	0%	151	41.1%	1	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HNRNPL	3191	genome.wustl.edu	37	19	39334491	39334491	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001533.2	-1	reviewed	p.S291C	1.000	89	0%	206	44.2%	22	68.1%	possibly_damaging(0.757)	deleterious(0.05)	deleterious(0.625)	superfamily_SSF54928
MEGF8	1954	genome.wustl.edu	37	19	42838169	42838169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.H121R	1.000	15	0%	58	34.5%	0	-	probably_damaging(0.995)	tolerated(0.4)	deleterious(0.474)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
MEGF8	1954	genome.wustl.edu	37	19	42880166	42880166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.R2526W	1.000	5	0.000	17	0.412	6	83.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PSG7	5676	genome.wustl.edu	37	19	43439787	43439787	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002783.2	-1	reviewed	p.W67G	0.153	225	0.4%	184	40.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PHLDB3	653583	genome.wustl.edu	37	19	43999727	43999727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198850.3	-1	validated	p.K291E	0.543	7	0.000	77	0.390	3	33.3%	benign(0.054)	tolerated(0.56)	neutral(0.010)	NULL
ZNF221	7638	genome.wustl.edu	37	19	44471017	44471017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013359.2	+1	validated	p.C455R	0.991	76	0%	75	46.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44680256	44680256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032372.1	+1	validated	p.T281A	0.000	61	0%	74	54.1%	0	-	benign(0.217)	tolerated(0.73)	neutral(0.023)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
APOC1	341	genome.wustl.edu	37	19	45422459	45422459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001645.3	+1	reviewed	p.V75A	0.001	17	0%	62	46.8%	602	0.1%	possibly_damaging(0.636)	deleterious(0.02)	deleterious(0.606)	HMMPfam_ApoC-I
CCDC61	729440	genome.wustl.edu	37	19	46519609	46519609	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080402.1	+1	provisional	p.F369C	1.000	14	0%	84	42.9%	9	55.5%	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	NULL
IGFL2	147920	genome.wustl.edu	37	19	46663993	46663993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002915.2	+1	validated	p.C77R	0.725	56	0%	46	32.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DHX34	9704	genome.wustl.edu	37	19	47885321	47885321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.F1128S	1.000	12	0%	35	51.4%	69	63.7%	possibly_damaging(0.777)	deleterious(0)	deleterious(0.734)	NULL
GLTSCR1	29998	genome.wustl.edu	37	19	48198682	48198682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015711.3	+1	provisional	p.N1046S	0.893	7	0.000	36	0.361	2	50%	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
CYTH2	9266	genome.wustl.edu	37	19	48982421	48982421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017457.4	+1	reviewed	p.A386V	0.986	25	0%	136	45.6%	153	45.7%	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
BCAT2	587	genome.wustl.edu	37	19	49303308	49303308	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001190.3	-1	reviewed	p.V154G	0.991	5	0.000	39	0.385	17	41.1%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes
TEAD2	8463	genome.wustl.edu	37	19	49863331	49863331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003598.1	-1	provisional	p.M1T	1.000	10	0%	57	35.1%	3	66.6%	benign(0.125)	deleterious(0)	neutral(0.455)	NULL
ALDH16A1	126133	genome.wustl.edu	37	19	49965160	49965160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153329.3	+1	reviewed	p.R260Q	0.999	5	0.000	27	0.370	20	50%	benign(0.011)	tolerated(0.16)	neutral(0.060)	HMMPfam_Aldedh,superfamily_ALDH-like
RCN3	57333	genome.wustl.edu	37	19	50040374	50040374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020650.2	+1	provisional	p.Q177R	1.000	16	0%	67	44.8%	49	38.7%	benign(0.008)	tolerated(0.6)	neutral(0.004)	superfamily_SSF47473
AP2A1	160	genome.wustl.edu	37	19	50308953	50308953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014203.2	+1	reviewed	p.L857P	1.000	8	0.000	77	0.416	94	42.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain
NUP62	23636	genome.wustl.edu	37	19	50411807	50411807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012346.3	-1	reviewed	p.T420S	0.999	41	0%	146	37.7%	16	37.5%	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_Nsp1_C
SIGLEC11	114132	genome.wustl.edu	37	19	50461972	50461972	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052884.2	-1	validated	p.E431*	0.004	10	0%	51	31.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF473	25888	genome.wustl.edu	37	19	50549875	50549875	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.S725	0.355	44	0%	85	51.8%	5	40%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
NAPSA	9476	genome.wustl.edu	37	19	50862879	50862879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004851.1	-1	reviewed	p.L273I	0.996	16	0%	65	46.2%	18	38.8%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_Asp,superfamily_Pept_Aspartic
ACPT	93650	genome.wustl.edu	37	19	51298101	51298101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033068.2	+1	reviewed	p.S349G	0.217	12	0%	67	56.7%	0	-	possibly_damaging(0.776)	tolerated(0.23)	neutral(0.331)	superfamily_Phosphoglycerate mutase-like
ZNF175	7728	genome.wustl.edu	37	19	52076601	52076601	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007147.2	+1	validated	p.L7	0.000	42	0%	61	49.2%	0	-	-	-	-	NULL
ZNF175	7728	genome.wustl.edu	37	19	52085121	52085121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007147.2	+1	validated	p.H94R	0.000	60	0%	103	51.5%	1	0%	possibly_damaging(0.895)	tolerated(0.77)	neutral(0.354)	NULL
ZNF614	80110	genome.wustl.edu	37	19	52521708	52521708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025040.3	-1	validated	p.W19R	0.368	44	0%	156	41%	0	-	probably_damaging(0.962)	tolerated(0.85)	neutral(0.406)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
PPP2R1A	5518	genome.wustl.edu	37	19	52719327	52719327	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.K331	1.000	23	0%	59	50.8%	86	38.3%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
ZNF610	162963	genome.wustl.edu	37	19	52869027	52869027	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.H132	0.892	104	0%	118	42.4%	0	-	-	-	-	NULL
ENSG00000245932	0	genome.wustl.edu	37	19	53302677	53302677	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500436	+1	known	NULL	0.008	94	0%	75	44%	1	0%	-	-	-	-
ZNF415	55786	genome.wustl.edu	37	19	53612905	53612905	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018355.2	-1	validated	p.G131	0.001	150	0%	188	45.7%	21	52.3%	-	-	-	NULL
ZNF813	126017	genome.wustl.edu	37	19	53993756	53993756	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004301.3	+1	validated	p.I90	0.003	127	0%	79	44.3%	0	-	-	-	-	NULL
PRPF31	26121	genome.wustl.edu	37	19	54631461	54631461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015629.3	+1	reviewed	p.L320P	0.984	6	0.000	50	0.260	98	47.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nop,superfamily_Nop domain
MBOAT7	79143	genome.wustl.edu	37	19	54682537	54682537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024298.3	-1	reviewed	p.W326R	1.000	13	0%	67	44.8%	48	43.7%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_MBOAT
RPS9	6203	genome.wustl.edu	37	19	54710426	54710426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402367	+1	known	p.R138Q	0.826	8	0.000	19	0.263	68	20.5%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	NULL
TTYH1	57348	genome.wustl.edu	37	19	54947307	54947307	+	Nonstop_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020659.2	+1	reviewed	p.*451G	1.000	18	0%	92	33.7%	2	50%	-	-	-	NULL
LILRB4	11006	genome.wustl.edu	37	19	55177761	55177761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006847.3	+1	reviewed	p.Q315H	0.000	58	0%	195	39.5%	7	0%	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
NCR1	9437	genome.wustl.edu	37	19	55420719	55420719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004829.5	+1	validated	p.K157N	1.000	18	0%	80	41.2%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00409,superfamily_Immunoglobulin
NLRP2	55655	genome.wustl.edu	37	19	55494667	55494667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017852.3	+1	validated	p.D534G	0.000	29	0%	127	43.3%	2	100%	benign(0.01)	deleterious(0.04)	neutral(0.349)	NULL
EPS8L1	54869	genome.wustl.edu	37	19	55593184	55593184	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133180.2	+1	reviewed	p.S273*	0.000	7	0.000	35	0.429	14	28.5%	-	-	-	NULL
TMEM150B	284417	genome.wustl.edu	37	19	55828329	55828329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085488.1	-1	provisional	p.K110N	0.355	23	0%	67	37.3%	1	0%	possibly_damaging(0.512)	tolerated(0.19)	neutral(0.221)	HMMPfam_Frag1
SSC5D	284297	genome.wustl.edu	37	19	56030260	56030260	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144950.1	+1	provisional	p.G1539	0.835	8	0.000	25	0.600	22	4.5%	-	-	-	NULL
NLRP9	338321	genome.wustl.edu	37	19	56243471	56243471	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.E576*	0.000	107	0%	66	28.8%	0	-	-	-	-	superfamily_RNI-like
NLRP9	338321	genome.wustl.edu	37	19	56244078	56244078	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176820.2	-1	reviewed	p.T373	0.000	73	0%	138	39.9%	0	-	-	-	-	NULL
NLRP13	126204	genome.wustl.edu	37	19	56424200	56424200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176810.2	-1	validated	p.D328G	0.001	72	0%	57	56.1%	0	-	possibly_damaging(0.659)	deleterious(0.01)	deleterious(0.638)	HMMPfam_NACHT
ZNF667	63934	genome.wustl.edu	37	19	56953299	56953299	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022103.3	-1	validated	p.E355	0.897	172	0%	108	40.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF772	400720	genome.wustl.edu	37	19	57985360	57985360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024596.2	-1	validated	p.S251I	0.001	43	0%	105	41.9%	0	-	probably_damaging(0.969)	tolerated(0.16)	deleterious(0.471)	superfamily_C2H2 and C2HC zinc fingers
ZNF772	400720	genome.wustl.edu	37	19	57986509	57986509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024596.2	-1	validated	p.T69P	0.004	55	0%	136	52.9%	0	-	benign(0.066)	tolerated(0.38)	neutral(0.022)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF530	348327	genome.wustl.edu	37	19	58117636	58117636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020880.3	+1	validated	p.F248S	0.014	81	0%	142	43%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100130710	100130710	genome.wustl.edu	37	19	58152367	58152367	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718544.2	-1	model	p.R409*	0.000	37	2.7%	57	54.4%	5	40%	-	-	-	NULL
ZNF587	84914	genome.wustl.edu	37	19	58370248	58370248	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339656	+1	known	p.S156	0.037	165	0%	157	15.9%	0	-	-	-	-	NULL
ZNF418	147686	genome.wustl.edu	37	19	58438791	58438791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.T253I	0.037	184	0%	201	40.8%	0	-	possibly_damaging(0.812)	deleterious(0.03)	deleterious(0.670)	superfamily_SSF57667
ZSCAN18	65982	genome.wustl.edu	37	19	58596111	58596111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145542.1	-1	validated	p.G548S	0.000	3	0.000	27	0.444	42	59.5%	unknown(0)	deleterious(0)	-	NULL
SIRPB1	10326	genome.wustl.edu	37	20	1551759	1551759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006065.3	-1	reviewed	p.Q259R	0.000	54	0%	68	39.7%	0	-	benign(0.068)	deleterious(0.02)	neutral(0.388)	HMMSmart_SM00409,superfamily_Immunoglobulin
VPS16	64601	genome.wustl.edu	37	20	2844727	2844727	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022575.2	+1	reviewed	p.K537Q	1.000	14	0%	84	44%	29	37.9%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Vps16_C
C20orf194	25943	genome.wustl.edu	37	20	3233249	3233249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009984.1	-1	validated	p.E1168G	1.000	126	0%	289	44.3%	3	100%	benign(0.35)	deleterious(0.05)	neutral(0.456)	NULL
PLCB4	5332	genome.wustl.edu	37	20	9319656	9319656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000933.3	+1	reviewed	p.M114T	1.000	112	0%	75	57.3%	2	100%	benign(0.061)	deleterious(0.01)	neutral(0.410)	superfamily_SSF50729
BTBD3	22903	genome.wustl.edu	37	20	11903729	11903729	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014962.2	+1	validated	p.D328	1.000	62	0%	52	50%	6	33.3%	-	-	-	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20493803	20493803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020343.2	-1	validated	p.E1404K	1.000	38	0%	38	55.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
XRN2	22803	genome.wustl.edu	37	20	21306948	21306948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012255.3	+1	reviewed	p.V36A	1.000	163	0%	99	34.3%	3	66.6%	benign(0.023)	tolerated(0.06)	neutral(0.324)	HMMPfam_XRN_N
GGTLC1	92086	genome.wustl.edu	37	20	23966425	23966425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000412175	-1	known	p.M130T	0.470	44	0%	136	45.6%	0	-	-	-	-	NULL
PLAGL2	5326	genome.wustl.edu	37	20	30784628	30784628	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002657.3	-1	reviewed	p.S373*	0.982	22	0%	71	33.8%	1	0%	-	-	-	NULL
PLAGL2	5326	genome.wustl.edu	37	20	30785421	30785421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002657.3	-1	reviewed	p.R109C	1.000	25	0%	147	44.9%	2	50%	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KIF3B	9371	genome.wustl.edu	37	20	30898899	30898899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004798.2	+1	reviewed	p.M440T	1.000	80	0%	133	40.6%	6	50%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
DNMT3B	1789	genome.wustl.edu	37	20	31376690	31376690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006892.3	+1	reviewed	p.V229M	1.000	52	0%	114	55.3%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
E2F1	1869	genome.wustl.edu	37	20	32265335	32265335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005225.2	-1	reviewed	p.V246A	1.000	27	0%	114	41.2%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
E2F1	1869	genome.wustl.edu	37	20	32266144	32266144	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005225.2	-1	reviewed	p.T196	0.000	6	0.000	33	0.364	4	25%	-	-	-	NULL
EIF2S2	8894	genome.wustl.edu	37	20	32684509	32684509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003908.3	-1	reviewed	p.G213R	1.000	173	0%	166	49.4%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_eIF-5_eIF-2B,HMMSmart_SM00653,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
MAP1LC3A	84557	genome.wustl.edu	37	20	33147212	33147212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181509.1	+1	reviewed	p.L57S	1.000	9	0.000	86	0.477	174	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MAP1_LC3,superfamily_SSF54236
MYH7B	57644	genome.wustl.edu	37	20	33587422	33587422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.I1572T	1.000	12	0%	90	31.1%	6	16.6%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_Myosin_tail_1
TRPC4AP	26133	genome.wustl.edu	37	20	33603862	33603862	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015638.2	-1	validated	p.S433	0.944	77	0%	87	46%	11	36.3%	-	-	-	NULL
FAM83C	128876	genome.wustl.edu	37	20	33876658	33876658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178468.4	-1	validated	p.Q206R	1.000	9	0.000	34	0.500	0	-	possibly_damaging(0.948)	deleterious(0.03)	deleterious(0.756)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
CEP250	11190	genome.wustl.edu	37	20	34065928	34065928	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007186.3	+1	reviewed	e14+2	1.000	17	0%	37	27%	2	100%	-	-	-	-
PHF20	51230	genome.wustl.edu	37	20	34501268	34501268	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016436.4	+1	validated	p.P553	1.000	103	0%	44	47.7%	4	50%	-	-	-	NULL
SOGA1	140710	genome.wustl.edu	37	20	35415025	35415025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000237536	-1	known	p.C1617R	1.000	34	0%	86	41.9%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
LBP	3929	genome.wustl.edu	37	20	36993326	36993326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004139.2	+1	reviewed	p.I281V	0.083	78	1.3%	158	39.2%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
CHD6	84181	genome.wustl.edu	37	20	40033517	40033517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.I2622V	1.000	41	0%	79	39.2%	15	46.6%	possibly_damaging(0.54)	deleterious(0.01)	deleterious(0.589)	NULL
SEMG2	6407	genome.wustl.edu	37	20	43851772	43851772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003008.2	+1	reviewed	p.K500R	0.000	81	0%	91	34.1%	0	-	possibly_damaging(0.556)	deleterious(0.04)	deleterious(0.538)	HMMPfam_Semenogelin
DBNDD2	55861	genome.wustl.edu	37	20	44037173	44037173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048221.1	+1	validated	p.F22L	1.000	25	0%	95	48.4%	15	60%	possibly_damaging(0.636)	deleterious(0.01)	deleterious(0.628)	HMMPfam_Dysbindin
PIGT	51604	genome.wustl.edu	37	20	44054333	44054333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015937.4	+1	reviewed	p.V535A	1.000	10	0%	48	52.1%	231	55.8%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Gpi16
ACOT8	10005	genome.wustl.edu	37	20	44483905	44483905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005469.2	-1	reviewed	p.K52R	0.989	18	0%	53	39.6%	17	29.4%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Acyl_CoA_thio,superfamily_SSF54637
ZNF840	100130863	genome.wustl.edu	37	20	45093543	45093543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722110.1	+1	model	p.E146G	0.999	58	0%	47	27.7%	0	-	-	-	-	NULL
SLC2A10	81031	genome.wustl.edu	37	20	45355558	45355558	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030777.3	+1	reviewed	p.F448	0.706	41	0%	128	40.6%	3	66.6%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
NCOA3	8202	genome.wustl.edu	37	20	46264746	46264746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181659.2	+1	reviewed	p.S539F	1.000	61	0%	70	32.9%	0	-	probably_damaging(1)	tolerated(0.4)	deleterious(0.516)	NULL
DDX27	55661	genome.wustl.edu	37	20	47855494	47855494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017895.7	+1	reviewed	p.L597F	1.000	52	0%	52	51.9%	39	43.5%	possibly_damaging(0.57)	deleterious(0.03)	deleterious(0.559)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADNP	23394	genome.wustl.edu	37	20	49510399	49510399	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.P284	0.078	88	0%	100	36%	5	60%	-	-	-	NULL
SALL4	57167	genome.wustl.edu	37	20	50400990	50400990	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.S992	0.951	41	2.4%	68	47.1%	1	0%	-	-	-	NULL
TSHZ2	128553	genome.wustl.edu	37	20	51870939	51870939	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173485.4	+1	validated	p.S314	0.463	36	0%	42	45.2%	1	0%	-	-	-	NULL
ANKRD60	140731	genome.wustl.edu	37	20	56793690	56793690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001134442.3	-1	model	p.L300P	0.000	37	0%	136	48.5%	0	-	benign(0.015)	tolerated(0.27)	neutral(0.034)	NULL
RAB22A	57403	genome.wustl.edu	37	20	56934728	56934728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020673.2	+1	reviewed	p.Q185P	1.000	23	0%	36	55.6%	13	38.4%	benign(0)	tolerated(0.26)	neutral(0.034)	HMMSmart_SM00176,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF831	128611	genome.wustl.edu	37	20	57768401	57768401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178457.1	+1	provisional	p.P776H	0.000	14	0%	71	35.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TCFL5	10732	genome.wustl.edu	37	20	61477420	61477420	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000217162	-1	known	p.K429T	0.007	12	0%	35	25.7%	0	-	unknown(0)	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61512815	61512815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.E1498G	0.825	23	0%	111	43.2%	2	50%	possibly_damaging(0.668)	deleterious(0)	deleterious(0.681)	NULL
DIDO1	11083	genome.wustl.edu	37	20	61542940	61542940	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.N9D	0.000	31	0%	135	39.3%	6	33.3%	benign(0.418)	tolerated(0.59)	neutral(0.140)	NULL
ARFGAP1	55738	genome.wustl.edu	37	20	61907867	61907867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175609.1	+1	reviewed	p.D69G	1.000	44	0%	146	45.2%	5	40%	possibly_damaging(0.822)	deleterious(0.04)	deleterious(0.660)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
TPD52L2	7165	genome.wustl.edu	37	20	62514110	62514110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199360.1	+1	validated	p.Q138R	1.000	20	0%	94	34%	3	100%	possibly_damaging(0.932)	deleterious(0)	deleterious(0.823)	HMMPfam_TPD52
MYT1	4661	genome.wustl.edu	37	20	62839312	62839312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004535.2	+1	reviewed	p.L255M	0.001	9	0.000	50	0.480	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
HSPA13	6782	genome.wustl.edu	37	21	15746314	15746314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006948.4	-1	reviewed	p.R347H	0.002	113	0%	102	42.2%	2	0%	benign(0.002)	tolerated(0.1)	neutral(0.286)	superfamily_Actin-like ATPase domain
USP25	29761	genome.wustl.edu	37	21	17202887	17202887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013396.3	+1	validated	p.I577M	0.999	144	0%	72	40.3%	3	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_UCH,superfamily_Cysteine proteinases
MIR99A	407055	genome.wustl.edu	37	21	17911409	17911409	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384906	+1	known	NULL	1.000	55	0%	53	43.4%	0	-	-	-	-	-
CYYR1	116159	genome.wustl.edu	37	21	27840903	27840903	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052954.2	-1	validated	p.L128M	0.984	29	3.4%	34	44.1%	1	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	NULL
ADAMTS5	11096	genome.wustl.edu	37	21	28302251	28302251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007038.3	-1	reviewed	p.D727Y	1.000	69	0%	62	50%	0	-	possibly_damaging(0.826)	deleterious(0)	deleterious(0.758)	NULL
N6AMT1	29104	genome.wustl.edu	37	21	30252190	30252190	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013240.3	-1	reviewed	e4+2	1.000	46	0%	56	37.5%	0	-	-	-	-	-
KRTAP26-1	388818	genome.wustl.edu	37	21	31691804	31691804	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203405.1	-1	validated	p.R184	1.000	36	0%	33	15.2%	0	-	-	-	-	HMMPfam_PMG
SCAF4	57466	genome.wustl.edu	37	21	33065608	33065608	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.S504	1.000	190	0%	209	45%	4	50%	-	-	-	superfamily_RNA-binding domain RBD
URB1	9875	genome.wustl.edu	37	21	33721781	33721781	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.S948	0.000	6	0.000	15	0.333	2	50%	-	-	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34038264	34038264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.S712G	0.998	38	0%	46	37%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
IFNAR2	3455	genome.wustl.edu	37	21	34635805	34635805	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207585.1	+1	reviewed	p.*516W	0.149	15	0%	27	51.9%	2	100%	-	-	-	NULL
IFNAR1	3454	genome.wustl.edu	37	21	34707931	34707931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000629.2	+1	reviewed	p.T60A	0.812	136	0%	142	35.9%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Fibronectin type III
GART	2618	genome.wustl.edu	37	21	34876533	34876533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000819.4	-1	reviewed	p.K977N	0.211	92	0%	105	41.9%	49	42.8%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Formyl_trans_N,superfamily_Formyltransferase
ITSN1	6453	genome.wustl.edu	37	21	35134258	35134258	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003024.2	+1	reviewed	p.S252	1.000	124	0%	111	40.5%	2	50%	-	-	-	HMMSmart_SM00027,superfamily_EF-hand
SLC5A3	6526	genome.wustl.edu	37	21	35469425	35469425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006933.4	+1	validated	p.E643fs	0.037	-	-	-	-	-	-	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37661062	37661062	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.T2102	1.000	103	0%	120	25%	5	40%	-	-	-	NULL
DOPEY2	9980	genome.wustl.edu	37	21	37665838	37665838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005128.2	+1	validated	p.E2289G	0.966	69	0%	112	39.3%	18	66.6%	benign(0.224)	deleterious(0)	neutral(0.467)	NULL
HLCS	3141	genome.wustl.edu	37	21	38309383	38309383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000411.5	-1	reviewed	p.K121R	0.019	46	0%	76	53.9%	3	66.6%	benign(0.004)	tolerated(1)	-	NULL
DSCR3	10311	genome.wustl.edu	37	21	38600669	38600669	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006052.1	-1	reviewed	p.L171R	0.002	25	0%	93	34.4%	7	42.8%	-	-	-	NULL
KCNJ15	3772	genome.wustl.edu	37	21	39671936	39671936	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002243.3	+1	reviewed	p.P251	1.000	39	0%	59	32.2%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
BRWD1	54014	genome.wustl.edu	37	21	40559055	40559055	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.D2287A	1.000	119	0%	233	39.9%	7	42.8%	possibly_damaging(0.842)	deleterious(0)	deleterious(0.766)	superfamily_WD40 repeat-like
BRWD1	54014	genome.wustl.edu	37	21	40568743	40568743	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018963.3	-1	reviewed	p.N2084	0.023	154	0%	141	48.2%	3	0%	-	-	-	superfamily_WD40 repeat-like
B3GALT5	10317	genome.wustl.edu	37	21	41032927	41032927	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006057.1	+1	reviewed	p.P147	0.037	53	0%	75	44%	0	-	-	-	-	HMMPfam_Galactosyl_T
DSCAM	1826	genome.wustl.edu	37	21	41710149	41710149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.E554D	1.000	97	0%	92	37%	0	-	possibly_damaging(0.809)	tolerated(0.41)	neutral(0.320)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
DSCAM	1826	genome.wustl.edu	37	21	41741079	41741079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.H201R	1.000	70	0%	68	36.8%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMSmart_SM00409,superfamily_Immunoglobulin
BACE2	25825	genome.wustl.edu	37	21	42609656	42609656	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012105.3	+1	reviewed	p.K206	1.000	128	0%	131	43.5%	42	69%	-	-	-	HMMPfam_Asp,superfamily_Acid proteases
FAM3B	54097	genome.wustl.edu	37	21	42694931	42694931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058186.3	+1	validated	p.D34G	0.115	42	0%	137	41.6%	19	52.6%	possibly_damaging(0.818)	deleterious(0.05)	deleterious(0.654)	PatternScan_AMINO_ACID_PERMEASE_1
ICOSLG	23308	genome.wustl.edu	37	21	45655320	45655320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015259.4	-1	validated	p.S178G	0.878	22	0%	119	41.2%	1	100%	probably_damaging(0.98)	tolerated(0.2)	deleterious(0.473)	superfamily_Immunoglobulin
AIRE	326	genome.wustl.edu	37	21	45708261	45708261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000383.2	+1	reviewed	p.A191V	1.000	20	0%	107	47.7%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_SAND,superfamily_SAND domain-like
KRTAP10-7	386675	genome.wustl.edu	37	21	46020954	46020954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380102	+1	known	p.S145G	0.593	55	0%	253	16.6%	0	-	unknown(0)	tolerated(0.66)	-	NULL
FAM207A	85395	genome.wustl.edu	37	21	46363743	46363743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058190.2	+1	predicted	p.I92V	0.001	16	0%	63	44.4%	7	28.5%	unknown(0)	tolerated(0.41)	-	NULL
DIP2A	23181	genome.wustl.edu	37	21	47958511	47958511	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015151.3	+1	reviewed	p.N639K	1.000	11	0%	47	44.7%	4	50%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Acetyl-CoA synthetase-like
CCT8L2	150160	genome.wustl.edu	37	22	17073333	17073333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.S36R	0.257	10	0%	53	47.2%	0	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	superfamily_GroEL equatorial domain-like
CECR5	27440	genome.wustl.edu	37	22	17629391	17629391	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033070.2	-1	validated	p.H130	0.000	58	0%	172	41.3%	7	71.4%	-	-	-	superfamily_HAD-like
MICAL3	57553	genome.wustl.edu	37	22	18387435	18387435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.F145L	1.000	46	0%	78	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD(P)-binding domain
ARVCF	421	genome.wustl.edu	37	22	19960710	19960710	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001670.1	-1	reviewed	p.S790	1.000	8	0.000	14	0.786	44	38.6%	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
PI4KA	5297	genome.wustl.edu	37	22	21067598	21067598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058004.2	-1	reviewed	p.I1790V	1.000	7	0.000	47	0.298	11	36.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
LZTR1	8216	genome.wustl.edu	37	22	21343948	21343948	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.R210*	1.000	30	0%	63	42.9%	12	83.3%	-	-	-	superfamily_Galactose oxidase central domain
TPST2	8459	genome.wustl.edu	37	22	26932449	26932449	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008566.1	-1	reviewed	p.I282	0.745	14	0%	39	61.5%	13	30.7%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MN1	4330	genome.wustl.edu	37	22	28196348	28196348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002430.2	-1	reviewed	p.G62S	1.000	11	0%	51	43.1%	0	-	probably_damaging(0.996)	tolerated(0.48)	deleterious(0.472)	NULL
TTC28	23331	genome.wustl.edu	37	22	28379076	28379076	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145418.1	-1	validated	p.P2193	0.000	48	0%	122	46.7%	11	63.6%	-	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29533328	29533328	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032045.4	+1	reviewed	e6-2	1.000	6	0.000	31	0.613	0	-	-	-	-	-
HORMAD2	150280	genome.wustl.edu	37	22	30500422	30500422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152510.2	+1	provisional	p.R97I	0.982	284	0%	89	34.8%	0	-	possibly_damaging(0.612)	deleterious(0.01)	deleterious(0.618)	HMMPfam_HORMA,superfamily_HORMA_DNA_bd
PRR14L	253143	genome.wustl.edu	37	22	32110732	32110732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173566.2	-1	validated	p.K1031N	0.172	46	0%	76	52.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HMOX1	3162	genome.wustl.edu	37	22	35782875	35782875	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002133.1	+1	reviewed	p.Y114	0.004	12	0%	30	53.3%	14	7.1%	-	-	-	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
APOL5	80831	genome.wustl.edu	37	22	36122764	36122764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030642.1	+1	reviewed	p.G217R	0.000	70	0%	117	43.6%	0	-	benign(0.026)	tolerated(0.13)	neutral(0.254)	HMMPfam_ApoL
FOXRED2	80020	genome.wustl.edu	37	22	36892246	36892246	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102371.1	-1	validated	p.T464	0.934	21	0%	79	45.6%	0	-	-	-	-	NULL
ELFN2	114794	genome.wustl.edu	37	22	37769468	37769468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.Y703H	1.000	11	0%	32	28.1%	0	-	probably_damaging(0.993)	tolerated(0.05)	deleterious(0.795)	NULL
KCNJ4	3761	genome.wustl.edu	37	22	38822882	38822882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004981.1	-1	reviewed	p.F419S	0.962	8	0.000	50	0.460	0	-	benign(0.001)	tolerated(0.8)	neutral(0.001)	NULL
DDX17	10521	genome.wustl.edu	37	22	38883998	38883998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098504.1	-1	reviewed	p.P524S	1.000	65	0%	75	46.7%	39	46.1%	benign(0.048)	tolerated(0.16)	neutral(0.062)	superfamily_P-loop containing nucleoside triphosphate hydrolases
APOBEC3D	140564	genome.wustl.edu	37	22	39421213	39421213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152426.3	+1	reviewed	p.T117A	0.000	27	0%	99	25.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
MKL1	57591	genome.wustl.edu	37	22	40815125	40815125	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.S439	0.175	4	0.000	17	0.471	9	66.6%	-	-	-	NULL
ST13	6767	genome.wustl.edu	37	22	41231837	41231837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003932.3	-1	reviewed	p.R146H	0.965	62	0%	86	46.5%	49	28.5%	benign(0.007)	tolerated(0.2)	neutral(0.049)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
EP300	2033	genome.wustl.edu	37	22	41573965	41573965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001429.3	+1	reviewed	p.F2084V	1.000	28	0%	48	37.5%	19	26.3%	unknown(0)	tolerated(0.15)	-	superfamily_Nuc_recept_coact,HMMPfam_Creb_binding
XRCC6	2547	genome.wustl.edu	37	22	42059692	42059692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001469.3	+1	reviewed	p.I568T	0.011	20	0%	70	35.7%	914	46.6%	benign(0)	tolerated(0.1)	neutral(0.286)	superfamily_SSF68906
RRP7A	27341	genome.wustl.edu	37	22	42908995	42908995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015703.4	-1	validated	p.A255V	0.998	3	0.000	25	0.600	110	52.7%	benign(0.16)	tolerated(0.52)	neutral(0.023)	NULL
CYB5R3	1727	genome.wustl.edu	37	22	43032786	43032786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000398.6	-1	reviewed	p.S30P	0.996	17	0%	66	42.4%	27	40.7%	unknown(0)	deleterious(0)	-	NULL
PLXNB2	23654	genome.wustl.edu	37	22	50719533	50719533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.K1250E	1.000	16	0%	79	38%	215	50.6%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
GYG2	8908	genome.wustl.edu	37	X	2774565	2774565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003918.2	+1	reviewed	p.F203L	0.992	42	0%	72	51.4%	1	0%	possibly_damaging(0.938)	deleterious(0.05)	deleterious(0.729)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
MXRA5	25878	genome.wustl.edu	37	X	3239867	3239867	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.E1287*	0.001	261	0%	301	45.2%	0	-	-	-	-	NULL
HDHD1	8226	genome.wustl.edu	37	X	6968396	6968396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135565.1	-1	reviewed	p.V233M	0.956	38	0%	74	43.2%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_HAD-like
ACE2	59272	genome.wustl.edu	37	X	15580122	15580122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021804.2	-1	reviewed	p.R775I	0.000	455	0.2%	154	40.9%	1	0%	benign(0.027)	deleterious(0.01)	neutral(0.407)	NULL
CTPS2	56474	genome.wustl.edu	37	X	16657302	16657302	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455276	-1	known	p.E76*	1.000	168	0%	117	51.3%	4	50%	benign(0.287)	deleterious(0.04)	neutral(0.438)	superfamily_Class I glutamine amidotransferase-like
NHS	4810	genome.wustl.edu	37	X	17737524	17737524	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136024.2	+1	reviewed	p.K128Q	1.000	38	2.6%	118	38.1%	1	0%	benign(0.226)	tolerated(0.38)	neutral(0.040)	NULL
SCML2	10389	genome.wustl.edu	37	X	18276278	18276278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006089.2	-1	validated	p.P387T	1.000	46	0%	79	41.8%	0	-	possibly_damaging(0.864)	tolerated(1)	neutral(0.335)	NULL
PHKA2	5256	genome.wustl.edu	37	X	18944664	18944664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.R456G	0.220	90	0%	114	41.2%	1	0%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMPfam_PHK_AB
PHKA2	5256	genome.wustl.edu	37	X	18959761	18959761	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000292.2	-1	reviewed	p.S250	0.635	108	0%	103	46.6%	0	-	-	-	-	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
PDHA1	5160	genome.wustl.edu	37	X	19373600	19373600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000284.3	+1	reviewed	p.G246D	1.000	72	0%	107	40.2%	91	90.1%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
CNKSR2	22866	genome.wustl.edu	37	X	21627452	21627452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.E803D	1.000	30	0%	32	25%	0	-	benign(0.007)	tolerated(0.12)	neutral(0.261)	NULL
APOO	79135	genome.wustl.edu	37	X	23899019	23899019	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024122.4	-1	reviewed	p.K20	1.000	65	0%	85	48.2%	12	100%	-	-	-	HMMPfam_ApoO
ZFX	7543	genome.wustl.edu	37	X	24228842	24228842	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003410.3	+1	reviewed	p.S589	1.000	97	0%	99	43.4%	2	50%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAM48B2	170067	genome.wustl.edu	37	X	24329600	24329600	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136233.1	-1	provisional	p.S611	0.000	8	0.000	44	0.477	0	-	-	-	-	NULL
DMD	1756	genome.wustl.edu	37	X	32408252	32408252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.M1427T	1.000	211	0%	126	43.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_t-snare proteins
DMD	1756	genome.wustl.edu	37	X	32717323	32717323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.E246G	1.000	201	0%	100	29%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
CXorf30	645090	genome.wustl.edu	37	X	36321980	36321980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098843.3	+1	validated	p.I109V	0.003	240	0%	102	41.2%	2	0%	benign(0.001)	tolerated(0.78)	neutral(0.001)	NULL
BCOR	54880	genome.wustl.edu	37	X	39921453	39921453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.L1456P	0.996	27	0%	103	45.6%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
USP27X	389856	genome.wustl.edu	37	X	49645144	49645144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145073.1	+1	provisional	p.R78S	0.999	74	0%	266	39.1%	1	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
AKAP4	8852	genome.wustl.edu	37	X	49957895	49957895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003886.2	-1	reviewed	p.L490P	0.917	130	0%	126	42.9%	0	-	probably_damaging(0.981)	tolerated(0.16)	deleterious(0.485)	HMMPfam_AKAP_110,HMMSmart_SM00807
KDM5C	8242	genome.wustl.edu	37	X	53228293	53228293	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.D703	0.997	33	0%	164	40.2%	14	42.8%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53573451	53573451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.K3621E	1.000	40	0%	80	40%	4	75%	unknown(0)	tolerated(0.07)	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53620411	53620411	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.S252P	0.997	36	0%	57	29.8%	1	0%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53629526	53629526	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.S990	1.000	202	0%	119	37%	0	-	-	-	-	NULL
PHF8	23133	genome.wustl.edu	37	X	54014211	54014211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015107.2	-1	reviewed	p.I633V	0.053	178	0%	193	43.5%	1	0%	benign(0.005)	tolerated(0.29)	neutral(0.029)	NULL
FAM120C	54954	genome.wustl.edu	37	X	54208945	54208945	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017848.4	-1	validated	p.R229	1.000	4	0.000	20	0.500	1	0%	-	-	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54574662	54574662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019067.5	+1	reviewed	p.N211D	1.000	52	0%	103	45.6%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	superfamily_SSF52540
MSN	4478	genome.wustl.edu	37	X	64947704	64947704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002444.2	+1	reviewed	p.V42A	1.000	424	0%	168	48.2%	6	66.6%	benign(0.313)	tolerated(0.05)	neutral(0.443)	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
HEPH	9843	genome.wustl.edu	37	X	65474949	65474949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.S882F	1.000	111	0%	66	34.8%	1	0%	probably_damaging(0.991)	tolerated(0.05)	deleterious(0.789)	superfamily_Cupredoxins
EDA2R	60401	genome.wustl.edu	37	X	65835774	65835774	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021783.2	-1	reviewed	e1+2	1.000	87	0%	43	53.5%	0	-	-	-	-	-
IL2RG	3561	genome.wustl.edu	37	X	70328508	70328508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374188	-1	known	p.S57Y	0.918	78	0%	143	42%	33	12.1%	-	-	-	NULL
NONO	4841	genome.wustl.edu	37	X	70510517	70510517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145408.1	+1	reviewed	p.E10D	1.000	90	0%	84	46.4%	36	0%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
ABCB7	22	genome.wustl.edu	37	X	74318805	74318805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004299.3	-1	reviewed	p.I143T	1.000	66	0%	76	34.2%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
ZDHHC15	158866	genome.wustl.edu	37	X	74641710	74641710	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144969.2	-1	reviewed	p.P284	0.992	332	0%	86	44.2%	0	-	-	-	-	NULL
ATRX	546	genome.wustl.edu	37	X	76939378	76939378	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.I457N	0.009	298	0%	199	42.2%	1	0%	benign(0.082)	tolerated(0.24)	neutral(0.043)	NULL
ZCCHC5	203430	genome.wustl.edu	37	X	77912808	77912808	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152694.2	-1	reviewed	p.Q370	0.000	57	0%	80	45%	0	-	-	-	-	NULL
ITM2A	9452	genome.wustl.edu	37	X	78616950	78616950	+	Silent	SNP	A	A	G	rs144338492	by1000genomes	TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004867.4	-1	reviewed	p.Y193	0.470	64	0%	59	39%	3	0%	-	-	-	HMMPfam_BRICHOS
BRWD3	254065	genome.wustl.edu	37	X	79932848	79932848	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.G1557*	1.000	33	0%	18	66.7%	1	0%	-	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91723312	91723312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.L1120I	0.999	234	0%	206	44.2%	0	-	benign(0.208)	tolerated(0.39)	neutral(0.036)	NULL
TNMD	64102	genome.wustl.edu	37	X	99852514	99852514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022144.2	+1	reviewed	p.T146N	1.000	154	0%	91	42.9%	0	-	probably_damaging(0.998)	tolerated(0.26)	deleterious(0.508)	HMMPfam_BRICHOS
NOX1	27035	genome.wustl.edu	37	X	100106235	100106235	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.V295G	1.000	61	0%	50	26%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FAD_binding_8,superfamily_Riboflavin synthase domain-like
ARMCX1	51309	genome.wustl.edu	37	X	100809047	100809047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016608.1	+1	reviewed	p.N378K	1.000	116	0%	133	40.6%	2	0%	possibly_damaging(0.902)	deleterious(0.01)	deleterious(0.762)	HMMPfam_DUF634,superfamily_ARM-type_fold
NXF2B	728343	genome.wustl.edu	37	X	101623452	101623452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099686.1	-1	provisional	p.D242N	1.000	201	0%	313	16%	0	-	benign(0.085)	deleterious(0.01)	neutral(0.412)	superfamily_SSF52058
MORF4L2	9643	genome.wustl.edu	37	X	102931865	102931865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142418.1	-1	validated	p.R31G	1.000	24	0%	78	50%	26	0%	-	-	-	HMMPfam_MRG
NRK	203447	genome.wustl.edu	37	X	105190374	105190374	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198465.2	+1	validated	p.K1424T	1.000	109	0%	107	29.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CNH,HMMSmart_SM00036
COL4A6	1288	genome.wustl.edu	37	X	107418365	107418365	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001847.2	-1	reviewed	p.G972C	1.000	34	0%	67	40.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
GUCY2F	2986	genome.wustl.edu	37	X	108696906	108696906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.E405D	0.969	159	0%	85	41.2%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
CHRDL1	91851	genome.wustl.edu	37	X	109937479	109937479	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143981.1	-1	reviewed	p.R230	1.000	89	0%	68	52.9%	0	-	-	-	-	NULL
DCX	1641	genome.wustl.edu	37	X	110654030	110654030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000555.2	-1	reviewed	p.S58I	1.000	125	0%	75	41.3%	0	-	unknown(0)	-	-	NULL
TRPC5	7224	genome.wustl.edu	37	X	111020000	111020000	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012471.2	-1	reviewed	p.S821	0.000	66	0%	46	32.6%	0	-	-	-	-	NULL
ZCCHC16	340595	genome.wustl.edu	37	X	111697980	111697980	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004308.2	+1	validated	p.S8	0.001	12	0%	26	34.6%	0	-	-	-	-	NULL
HTR2C	3358	genome.wustl.edu	37	X	114141329	114141329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000868.2	+1	reviewed	p.R243Q	0.877	68	0%	68	55.9%	0	-	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	HMMPfam_7tm_1,superfamily_SSF81321
WDR44	54521	genome.wustl.edu	37	X	117529212	117529212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019045.4	+1	reviewed	p.E320K	1.000	46	0%	49	32.7%	0	-	possibly_damaging(0.856)	deleterious(0.03)	deleterious(0.695)	superfamily_WD40 repeat-like
DOCK11	139818	genome.wustl.edu	37	X	117700081	117700081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.K269N	1.000	106	0%	67	50.7%	0	-	probably_damaging(0.968)	tolerated(0.06)	deleterious(0.732)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
RPL39	6170	genome.wustl.edu	37	X	118920674	118920674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001000.2	-1	reviewed	p.H43Q	0.687	155	0%	121	47.9%	3598	0%	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	HMMPfam_Ribosomal_L39,superfamily_Ribosomal protein L39e,PatternScan_RIBOSOMAL_L39E
UPF3B	65109	genome.wustl.edu	37	X	118986752	118986752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080632.1	-1	reviewed	p.K47R	1.000	43	0%	163	36.2%	1	100%	possibly_damaging(0.662)	tolerated(0.27)	neutral(0.268)	HMMPfam_Smg4_UPF3
ODZ1	10178	genome.wustl.edu	37	X	123554171	123554171	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.T1651P	1.000	48	0%	35	37.1%	0	-	probably_damaging(0.988)	tolerated(0.2)	deleterious(0.486)	HMMPfam_RHS_repeat,superfamily_N2O_reductase_N
SMARCA1	6594	genome.wustl.edu	37	X	128605271	128605271	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.A825	0.987	318	0%	122	44.3%	5	100%	-	-	-	HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCA1	6594	genome.wustl.edu	37	X	128657346	128657346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003069.3	-1	reviewed	p.M1T	1.000	48	0%	98	41.8%	1	100%	unknown(0)	deleterious(0.01)	-	NULL
FRMD7	90167	genome.wustl.edu	37	X	131212227	131212227	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194277.2	-1	reviewed	p.E606D	1.000	103	0%	55	49.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
MAP7D3	79649	genome.wustl.edu	37	X	135326867	135326867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024597.3	-1	reviewed	p.K114R	0.000	652	0.2%	510	41.2%	0	-	benign(0.106)	deleterious(0.01)	neutral(0.414)	NULL
BRS3	680	genome.wustl.edu	37	X	135570622	135570622	+	Silent	SNP	A	A	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001727.1	+1	validated	p.R117	0.999	111	0%	158	38.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CD40LG	959	genome.wustl.edu	37	X	135732530	135732530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000074.2	+1	reviewed	p.K88E	0.079	129	0%	53	47.2%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138844171	138844171	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.G866	0.998	134	0%	84	39.3%	0	-	-	-	-	NULL
FMR1	2332	genome.wustl.edu	37	X	147014238	147014238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.L279P	1.000	198	0%	126	45.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
HMGB3	3149	genome.wustl.edu	37	X	150156381	150156381	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005342.2	+1	validated	p.D199	1.000	54	0%	75	56%	5	40%	-	-	-	NULL
PASD1	139135	genome.wustl.edu	37	X	150793988	150793988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173493.2	+1	reviewed	p.F205L	0.000	102	0%	97	43.3%	0	-	possibly_damaging(0.936)	deleterious(0.02)	deleterious(0.764)	NULL
MIR224	407009	genome.wustl.edu	37	X	151127117	151127117	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384889	-1	known	NULL	1.000	91	0%	123	56.1%	0	-	-	-	-	-
PNMA3	29944	genome.wustl.edu	37	X	152226883	152226883	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370265	+1	known	p.A450	0.000	91	0%	190	43.7%	0	-	-	-	-	NULL
FAM58A	92002	genome.wustl.edu	37	X	152853904	152853904	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152274.3	-1	reviewed	p.*222R	1.000	145	0%	177	26%	25	0%	-	-	-	NULL
IDH3G	3421	genome.wustl.edu	37	X	153051333	153051333	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454076	-1	known	p.G210S	0.986	16	0%	68	48.5%	622	0%	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153132960	153132960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.Y663C	0.033	40	0%	172	41.3%	0	-	benign(0.412)	tolerated(0.12)	neutral(0.394)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
HCFC1	3054	genome.wustl.edu	37	X	153225251	153225251	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	e8+2	0.992	18	0%	85	48.2%	0	-	-	-	-	-
TAZ	6901	genome.wustl.edu	37	X	153641665	153641665	+	RNA	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024048.1	+1	reviewed	NULL	0.001	14	0%	42	59.5%	10	0%	-	-	-	-
PLXNA3	55558	genome.wustl.edu	37	X	153689812	153689812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.Q323R	1.000	16	0%	88	40.9%	2	0%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PLXNA3	55558	genome.wustl.edu	37	X	153695633	153695633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017514.3	+1	reviewed	p.G1087E	0.553	13	0%	42	50%	9	0%	benign(0.152)	tolerated(0.91)	neutral(0.013)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
GAB3	139716	genome.wustl.edu	37	X	153924243	153924243	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081573.1	-1	reviewed	p.R493	1.000	222	0%	119	47.1%	0	-	-	-	-	NULL
MPP1	4354	genome.wustl.edu	37	X	154009532	154009532	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002436.3	-1	reviewed	p.P402	0.044	66	0%	179	41.3%	8	0%	-	-	-	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
F8	2157	genome.wustl.edu	37	X	154157330	154157330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.K1579E	0.001	154	0%	51	52.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
F8	2157	genome.wustl.edu	37	X	154158657	154158657	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.S1136	0.001	83	0%	67	46.3%	0	-	-	-	-	NULL
CLIC2	1193	genome.wustl.edu	37	X	154528125	154528125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UJ-01A-12D-A10B-09	TCGA-BS-A0UJ-10A-01D-A127-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001289.4	-1	reviewed	p.F89S	1.000	238	0%	332	41.9%	3	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Thioredoxin-like
