Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
BLZF1	8548	genome.wustl.edu	37	1	169345878	169345878	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003666.2	+1	validated	p.K43	0.011	157	0%	134	50.7%	-	-	-	-	-	NULL
NID1	4811	genome.wustl.edu	37	1	236201448	236201448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.C414Y	1.000	99	0%	85	34.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
NCKAP5	344148	genome.wustl.edu	37	2	133541217	133541217	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.T1056S	0.003	191	0%	150	46%	-	-	benign(0.253)	deleterious(0)	deleterious(0.471)	NULL
ARMC9	80210	genome.wustl.edu	37	2	232225535	232225536	+	Frame_Shift_Ins	INS	-	-	G	rs35889244	byCluster;by1000genomes	TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359743	+1	known	p.P735fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.G34V	1.000	102	0%	101	35.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47040005	47040007	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015175.1	+1	validated	p.K1059in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF654	55279	genome.wustl.edu	37	3	88189043	88189043	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018293.2	+1	validated	p.Q195*	0.996	126	0%	138	52.9%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.G118D	1.000	259	0%	224	46%	-	-	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	superfamily_SSF54236
MYL5	4636	genome.wustl.edu	37	4	674922	674922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002477.1	+1	reviewed	p.A138V	0.012	19	0%	22	45.5%	-	-	benign(0.389)	tolerated(0.05)	deleterious(0.470)	superfamily_EF-hand
SCARNA22	677770	genome.wustl.edu	37	4	1976379	1976379	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_003004.1	+1	provisional	NULL	0.000	4	0.000	11	0.455	-	-	-	-	-	-
EPHA5	2044	genome.wustl.edu	37	4	66201833	66201833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.A890V	1.000	118	0%	130	50%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LPCAT1	79888	genome.wustl.edu	37	5	1494912	1494912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000475622	-1	known	p.R128C	0.997	44	0%	45	55.6%	-	-	-	-	-	NULL
TTC37	9652	genome.wustl.edu	37	5	94805538	94805538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014639.2	-1	provisional	p.P1481L	1.000	125	0%	129	43.4%	-	-	benign(0.04)	tolerated(0.54)	neutral(0.010)	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140255345	140255345	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.C96	0.070	93	0%	92	51.1%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
RBM27	54439	genome.wustl.edu	37	5	145643143	145643143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018989.1	+1	validated	p.S760R	0.927	227	0%	201	47.3%	-	-	benign(0.248)	tolerated(0.05)	neutral(0.370)	NULL
GPRIN1	114787	genome.wustl.edu	37	5	176026254	176026254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052899.2	-1	validated	p.D194E	0.000	30	0%	40	52.5%	-	-	benign(0.004)	tolerated(1)	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51618014	51618014	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R2979*	0.000	146	0%	128	40.6%	-	-	-	-	-	NULL
MMS22L	253714	genome.wustl.edu	37	6	97634457	97634457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.L717M	0.595	79	0%	65	43.1%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
EIF3B	8662	genome.wustl.edu	37	7	2412383	2412383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037283.1	+1	validated	p.S588F	0.974	142	0%	135	47.4%	-	-	possibly_damaging(0.433)	tolerated(0.05)	deleterious(0.486)	HMMPfam_eIF2A,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
ANKIB1	54467	genome.wustl.edu	37	7	91972444	91972444	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.A298	1.000	207	0%	155	42.6%	-	-	-	-	-	superfamily_ANK
DLC1	10395	genome.wustl.edu	37	8	13357421	13357421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182643.2	-1	reviewed	p.R54C	0.998	106	0%	107	40.2%	-	-	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52320933	52320933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.A1084V	1.000	88	0%	62	35.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
RP1	6101	genome.wustl.edu	37	8	55534730	55534730	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006269.1	+1	reviewed	p.G223	1.000	151	0%	158	60.8%	-	-	-	-	-	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
CHD7	55636	genome.wustl.edu	37	8	61741241	61741241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017780.2	+1	reviewed	p.T1133M	1.000	107	0%	139	53.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
NAMPTL	646309	genome.wustl.edu	37	10	36812822	36812822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.T114M	1.000	350	0%	477	34.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AGAP6	414189	genome.wustl.edu	37	10	51769799	51769799	+	Silent	SNP	C	C	T	rs80034169		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077665.2	+1	validated	p.V638	0.994	40	12.5%	60	20%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
WAPAL	23063	genome.wustl.edu	37	10	88277363	88277363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015045.2	-1	validated	p.A155V	1.000	278	0%	339	30.1%	-	-	benign(0.167)	tolerated(0.1)	neutral(0.301)	NULL
PTEN	5728	genome.wustl.edu	37	10	89711925	89711926	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.L181fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
TTC40	54777	genome.wustl.edu	37	10	134621939	134621939	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368586	-1	known	p.L2712	0.011	19	0%	55	16.4%	-	-	-	-	-	NULL
PDHX	8050	genome.wustl.edu	37	11	34938234	34938234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003477.2	+1	reviewed	p.P11L	0.002	61	0%	62	33.9%	-	-	benign(0.032)	tolerated(0.1)	neutral(0.288)	NULL
MTNR1B	4544	genome.wustl.edu	37	11	92715124	92715124	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005959.3	+1	reviewed	p.S245	0.014	51	0%	61	47.5%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
C11orf34	349633	genome.wustl.edu	37	11	112126170	112126170	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145024.1	-1	provisional	p.T109	0.000	226	0%	171	45.6%	-	-	-	-	-	NULL
GPR133	283383	genome.wustl.edu	37	12	131466545	131466545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.G143S	0.999	87	0%	81	46.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases
PCDH9	5101	genome.wustl.edu	37	13	67802442	67802442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203487.2	-1	reviewed	p.P44Q	1.000	150	0%	177	54.2%	-	-	possibly_damaging(0.891)	tolerated(0.08)	deleterious(0.650)	HMMPfam_Cadherin_2,superfamily_Cadherin-like
TBC1D4	9882	genome.wustl.edu	37	13	75869002	75869002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014832.2	-1	validated	p.A1102T	1.000	120	0%	117	45.3%	-	-	possibly_damaging(0.609)	tolerated(0.23)	neutral(0.253)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
RIN3	79890	genome.wustl.edu	37	14	93118516	93118516	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024832.3	+1	validated	p.P374	0.014	9	0.000	14	0.500	-	-	-	-	-	NULL
DDX24	57062	genome.wustl.edu	37	14	94526801	94526801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.R519Q	0.996	288	0%	283	14.5%	-	-	possibly_damaging(0.909)	tolerated(0.09)	deleterious(0.658)	HMMSmart_DEXDc,superfamily_SSF52540
WARS	7453	genome.wustl.edu	37	14	100803413	100803413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004184.3	-1	reviewed	p.E414K	0.998	125	0%	102	47.1%	-	-	possibly_damaging(0.927)	tolerated(0.36)	neutral(0.395)	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
ALDH1A3	220	genome.wustl.edu	37	15	101440918	101440918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000693.2	+1	reviewed	p.R341L	0.147	91	0%	91	57.1%	-	-	probably_damaging(0.976)	tolerated(0.11)	deleterious(0.690)	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
ABCC6	368	genome.wustl.edu	37	16	16315528	16315528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001171.5	-1	reviewed	p.S66F	0.987	93	0%	119	21%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
BCAR1	9564	genome.wustl.edu	37	16	75298392	75298392	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418647	-1	known	p.A3S	0.121	11	0%	13	69.2%	-	-	unknown(0)	-	-	NULL
MPP2	4355	genome.wustl.edu	37	17	41959878	41959878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005374.3	-1	reviewed	p.G152V	1.000	21	0%	20	60%	-	-	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
KIF18B	146909	genome.wustl.edu	37	17	43003803	43003803	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376982	-1	known	e14+1	0.879	138	0%	108	50.9%	-	-	benign(0.026)	tolerated(0.11)	neutral(0.273)	-
SCPEP1	59342	genome.wustl.edu	37	17	55079509	55079509	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021626.2	+1	validated	p.L421	0.963	150	0%	149	47%	-	-	-	-	-	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
CLEC4M	10332	genome.wustl.edu	37	19	7831669	7831669	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014257.4	+1	reviewed	p.V304	0.003	80	0%	79	45.6%	-	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
ARHGAP35	2909	genome.wustl.edu	37	19	47423264	47423264	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.F445fs	0.960	-	-	-	-	-	-	-	-	-	HMMSmart_SM00441
LRRC4B	94030	genome.wustl.edu	37	19	51021739	51021739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080457.1	-1	provisional	p.V411M	1.000	33	0%	41	48.8%	-	-	possibly_damaging(0.619)	tolerated(0.26)	neutral(0.249)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
TNNT1	7138	genome.wustl.edu	37	19	55649383	55649383	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003283.4	-1	reviewed	p.K149N	0.996	230	0%	212	41.5%	-	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Troponin
ACSS1	84532	genome.wustl.edu	37	20	24988467	24988467	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032501.2	-1	reviewed	p.D667	1.000	101	0%	98	58.2%	-	-	-	-	-	superfamily_Acetyl-CoA synthetase-like
CDH4	1002	genome.wustl.edu	37	20	60318708	60318708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.A87T	0.995	37	0%	30	23.3%	-	-	benign(0.003)	tolerated(0.37)	neutral(0.019)	HMMPfam_Cadherin_pro,superfamily_Cadherin
BCR	613	genome.wustl.edu	37	22	23656202	23656202	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004327.3	+1	reviewed	p.L1169	1.000	67	0%	88	46.6%	-	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PLXNB2	23654	genome.wustl.edu	37	22	50721777	50721777	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.F890V	1.000	25	0%	20	35%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_TIG,HMMSmart_IPT,superfamily_Ig_E-set
ENSG00000211459	0	genome.wustl.edu	37	MT	901	901	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	155	0%	78	47.4%	-	-	-	-	-	-
TAB3	257397	genome.wustl.edu	37	X	30873213	30873213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152787.3	-1	reviewed	p.Y190F	1.000	233	0%	251	51.8%	-	-	possibly_damaging(0.945)	tolerated(0.67)	neutral(0.392)	NULL
NYX	60506	genome.wustl.edu	37	X	41333519	41333519	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022567.2	+1	reviewed	p.R271	0.013	5	0.000	14	0.714	-	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
SMC1A	8243	genome.wustl.edu	37	X	53449449	53449449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006306.2	-1	reviewed	p.N34S	1.000	125	0%	129	48.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_SMC_N,superfamily_SSF52540
LOC100288033	100288033	genome.wustl.edu	37	X	70887736	70887736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343818.1	+1	model	p.S28N	0.000	47	0%	46	56.5%	-	-	-	-	-	NULL
FAM133A	286499	genome.wustl.edu	37	X	92964827	92964827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173698.2	+1	validated	p.R137C	0.025	62	0%	59	42.4%	-	-	unknown(0)	deleterious(0.01)	-	NULL
ALG13	79868	genome.wustl.edu	37	X	110980098	110980098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.G896S	0.020	196	0%	210	41.4%	-	-	probably_damaging(0.999)	tolerated(0.69)	deleterious(0.492)	NULL
AVPR2	554	genome.wustl.edu	37	X	153171162	153171162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0WQ-01A-21D-A10G-09	TCGA-BS-A0WQ-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000054.4	+1	reviewed	p.R68W	1.000	17	0%	14	57.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
