Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTSL1	92949	genome.wustl.edu	37	9	18777368	18777368	+	Silent	SNP	T	T	C	rs7033684	byCluster;by2Hit2Allele;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18777368	18777368	T	C	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	silent	c.3141	p.S1047	0.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-	
C19orf28	126321	genome.wustl.edu	37	19	3548231	3548231	+	Missense_Mutation	SNP	A	A	G	rs2240751	byCluster;byFrequency;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3548231	3548231	A	G	SNP	C19orf28	NM_021731	human	genbank	57_37b	-1	validated	missense	c.544	p.Y182H	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	
CAMTA1	23261	genome.wustl.edu	37	1	7792621	7792621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	7792621	7792621	G	A	SNP	CAMTA1	NM_015215	human	genbank	57_37b	+1	validated	missense	c.3028	p.G1010S	0.998	NULL	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors
CNTLN	54875	genome.wustl.edu	37	9	17135115	17135115	+	Silent	SNP	C	C	T	rs41306071	byCluster;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	17135115	17135115	C	T	SNP	CNTLN	NM_017738	human	genbank	57_37b	+1	validated	silent	c.52	p.L18	0.001	NULL	superfamily_Prefoldin	-	
CNTNAP4	85445	genome.wustl.edu	37	16	76572213	76572213	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	76572213	76572213	C	A	SNP	CNTNAP4	NM_138994	human	genbank	57_37b	+1	validated	missense	c.2977	p.L993I	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
CRX	1406	genome.wustl.edu	37	19	48342988	48342988	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48342988	48342988	C	A	SNP	CRX	NM_000554	human	genbank	57_37b	+1	reviewed	missense	c.664	p.L222I	1.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
EXT1	2131	genome.wustl.edu	37	8	118849379	118849379	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	118849379	118849379	G	T	SNP	EXT1	NM_000127	human	genbank	57_37b	-1	reviewed	missense	c.1024	p.L342I	1.000	HMMPfam_Exostosin	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-	no_errors
GSDMD	79792	genome.wustl.edu	37	8	144642854	144642854	+	Silent	SNP	G	G	A	rs11551202	byCluster;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144642854	144642854	G	A	SNP	GSDMD	NM_024736	human	genbank	57_37b	+1	reviewed	silent	c.492	p.L164	0.999	HMMPfam_Gasdermin	HMMPfam_Gasdermin	-	
ILF2	3608	genome.wustl.edu	37	1	153635526	153635526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153635526	153635526	C	G	SNP	ILF2	NM_004515	human	genbank	57_37b	-1	reviewed	missense	c.890	p.R297T	1.000	HMMSmart_SM00572,HMMPfam_DZF	superfamily_Nucleotidyltransferase,HMMSmart_SM00572,HMMPfam_DZF	-	no_errors
LOXL1	4016	genome.wustl.edu	37	15	74239446	74239446	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74239446	74239446	T	C	SNP	LOXL1	NM_005576	human	genbank	57_37b	+1	reviewed	missense	c.1388	p.L463P	1.000	HMMPfam_Lysyl_oxidase	HMMPfam_Lysyl_oxidase,PatternScan_LYSYL_OXIDASE	-	no_errors
MFN1	55669	genome.wustl.edu	37	3	179107927	179107927	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	179107927	179107927	G	T	SNP	MFN1	NM_033540	human	genbank	57_37b	+1	reviewed	splice_site	c.2147+1	e16+1	1.000	-	-	-	no_errors
NOL12	79159	genome.wustl.edu	37	22	38082463	38082463	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38082463	38082463	T	G	SNP	NOL12	NM_024313	human	genbank	57_37b	+1	validated	missense	c.64	p.F22V	1.000	HMMPfam_Nop25	HMMPfam_Nop25	-	no_errors
NPR3	4883	genome.wustl.edu	37	5	32786414	32786414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32786414	32786414	G	C	SNP	NPR3	NM_000908	human	genbank	57_37b	+1	validated	missense	c.1586	p.R529P	1.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS	-	no_errors
NUDT1	4521	genome.wustl.edu	37	7	2290629	2290629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2290629	2290629	C	T	SNP	NUDT1	NM_198949	human	genbank	57_37b	+1	reviewed	missense	c.533	p.T178M	0.000	superfamily_Nudix	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	-	no_errors
OPN4	94233	genome.wustl.edu	37	10	88416983	88416983	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	88416983	88416983	C	T	SNP	OPN4	NM_001030015	human	genbank	57_37b	+1	validated	nonsense	c.322	p.Q108*	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
PCSK9	255738	genome.wustl.edu	37	1	55505668	55505668	+	Missense_Mutation	SNP	C	C	T	rs11583680	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55505668	55505668	C	T	SNP	PCSK9	NM_174936	human	genbank	57_37b	+1	reviewed	missense	c.158	p.A53V	0.000	NULL	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8	-	
PKNOX2	63876	genome.wustl.edu	37	11	125255595	125255595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125255595	125255595	G	A	SNP	PKNOX2	NM_022062	human	genbank	57_37b	+1	validated	missense	c.376	p.D126N	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
RPL3L	6123	genome.wustl.edu	37	16	2002953	2002953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2002953	2002953	G	A	SNP	RPL3L	NM_005061	human	genbank	57_37b	-1	reviewed	missense	c.287	p.P96L	0.530	superfamily_Translat_factor,HMMPfam_Ribosomal_L3	superfamily_Translat_factor,HMMPfam_Ribosomal_L3,PatternScan_RIBOSOMAL_L3	-	no_errors
SAAL1	113174	genome.wustl.edu	37	11	18127530	18127531	+	In_Frame_Ins	INS	-	-	CCTCCT	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18127530	18127531	-	CCTCCT	INS	SAAL1	NM_138421	human	genbank	57_37b	-1	validated	in_frame_ins	c.59_58	p.20in_frame_insEE	0.000:0.002	NULL	superfamily_ARM-type_fold	-	no_errors
SSTR4	6754	genome.wustl.edu	37	20	23017092	23017092	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23017092	23017092	G	T	SNP	SSTR4	NM_001052	human	genbank	57_37b	+1	validated	silent	c.972	p.R324	0.981	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SYT6	148281	genome.wustl.edu	37	1	114640409	114640409	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114640409	114640409	G	A	SNP	SYT6	NM_205848	human	genbank	57_37b	-1	validated	silent	c.1200	p.Y400	1.000	superfamily_C2_CaLB,HMMSmart_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
TBC1D1	23216	genome.wustl.edu	37	4	38016395	38016395	+	Missense_Mutation	SNP	T	T	G	rs10501	byCluster;by2Hit2Allele;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	38016395	38016395	T	G	SNP	TBC1D1	NM_015173	human	genbank	57_37b	+1	validated	missense	c.683	p.V228G	0.000	HMMSmart_SM00462,superfamily_PH domain-like,HMMPfam_PID	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,PatternScan_LECTIN_LEGUME_BETA,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	
ZFHX4	79776	genome.wustl.edu	37	8	77618671	77618671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	77618671	77618671	G	A	SNP	ZFHX4	NM_024721	human	genbank	57_37b	+1	validated	missense	c.2348	p.R783Q	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	HMMSmart_SM00355,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ZFP36L2	678	genome.wustl.edu	37	2	43452183	43452183	+	Silent	SNP	A	A	G	rs7933	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12V-01A-11D-A10Y-09	TCGA-C8-A12V-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	43452183	43452183	A	G	SNP	ZFP36L2	NM_006887	human	genbank	57_37b	-1	reviewed	silent	c.760	p.L254	1.000	NULL	HMMPfam_Tis11B_N,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	
