Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
MRPL20	55052	broad.mit.edu	37	1	1341194	1341194	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:1341194C>G	uc001afo.3	-	3	367	c.271G>C	c.(271-273)GTT>CTT	p.V91L	MRPL20_uc010nyn.1_Missense_Mutation_p.V91L	NM_017971	NP_060441	Q9BYC9	RM20_HUMAN	mitochondrial ribosomal protein L20 precursor	91							protein binding|rRNA binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		CATACCTTAACTAAATTCCCA	0.333													40	130					0	0	0	0
UTS2	10911	broad.mit.edu	37	1	7913473	7913473	+	5'Flank	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:7913473G>T	uc001aor.2	-						UTS2_uc001aoq.2_5'UTR|UTS2_uc001aos.2_Missense_Mutation_p.H7N	NM_006786	NP_006777	O95399	UTS2_HUMAN	urotensin 2 isoform b preproprotein						muscle contraction|regulation of blood pressure|synaptic transmission	extracellular space	hormone activity				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;1.38e-20)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.26e-71)|GBM - Glioblastoma multiforme(8;5.15e-36)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000386)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|STAD - Stomach adenocarcinoma(132;0.000951)|READ - Rectum adenocarcinoma(331;0.0642)		AGCATAAGATGAAATACGTTG	0.413													6	46					3.09899e-07	4.2785e-07	1	0
SPEN	23013	broad.mit.edu	37	1	16261424	16261424	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:16261424C>G	uc001axk.1	+	11	8893	c.8689C>G	c.(8689-8691)CCT>GCT	p.P2897A	SPEN_uc010obp.1_Missense_Mutation_p.P2856A	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2897					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TAATGCCTCTCCTGTGATTTC	0.582													9	42					0	0	0	0
MST1P2	11209	broad.mit.edu	37	1	16974786	16974786	+	RNA	SNP	G	C	C	rs28622547	by1000genomes	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:16974786G>C	uc010och.1	+	7		c.1246G>C			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGCCCGCACCGGCCGCAGACT	0.741													5	33					0	0	0	0
UBR4	23352	broad.mit.edu	37	1	19451151	19451151	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:19451151G>C	uc001bbi.2	-	65	9476	c.9472C>G	c.(9472-9474)CAG>GAG	p.Q3158E	UBR4_uc001bbk.1_Missense_Mutation_p.Q805E	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3158					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GTTAGAAGCTGAGTATAGGCC	0.428													11	58					0	0	0	0
UBR4	23352	broad.mit.edu	37	1	19453067	19453067	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:19453067G>C	uc001bbi.2	-	64	9315	c.9311C>G	c.(9310-9312)TCA>TGA	p.S3104*	UBR4_uc001bbk.1_Nonsense_Mutation_p.S751*	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3104					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTCCAGCAGTGATTTGAGCAC	0.537													39	124					0	0	0	0
HTR6	3362	broad.mit.edu	37	1	19992627	19992627	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:19992627C>G	uc001bcl.2	+	1	848	c.381C>G	c.(379-381)CTC>CTG	p.L127L		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	127	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	GCTACCTGCTCATCCTCTCGC	0.687													8	102					0	0	0	0
CLIC4	25932	broad.mit.edu	37	1	25153552	25153552	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:25153552C>T	uc001bjo.2	+	4	645	c.360C>T	c.(358-360)GAC>GAT	p.D120D	CLIC4_uc001bjn.2_RNA|CLIC4_uc001bjp.1_Silent_p.D100D	NM_013943	NP_039234	Q9Y696	CLIC4_HUMAN	chloride intracellular channel 4	120	GST C-terminal.				cellular response to calcium ion|establishment or maintenance of apical/basal cell polarity|keratinocyte differentiation|negative regulation of cell migration|regulation of cytoskeleton organization	actin cytoskeleton|apical part of cell|cell surface|cell-cell junction|centrosome|chloride channel complex|cytoplasmic vesicle membrane|cytosol|microvillus|midbody|mitochondrion|nuclear matrix|perinuclear region of cytoplasm|soluble fraction	voltage-gated chloride channel activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000778)|all_lung(284;0.00106)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0479)|OV - Ovarian serous cystadenocarcinoma(117;1.06e-24)|Colorectal(126;1.03e-07)|COAD - Colon adenocarcinoma(152;4.93e-06)|STAD - Stomach adenocarcinoma(196;0.000418)|GBM - Glioblastoma multiforme(114;0.000451)|BRCA - Breast invasive adenocarcinoma(304;0.00215)|KIRC - Kidney renal clear cell carcinoma(1967;0.00216)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.18)		CTGGAATGGACATCTTTGCCA	0.333													16	143					0	0	0	0
KIAA0319L	79932	broad.mit.edu	37	1	35917293	35917293	+	Silent	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:35917293G>T	uc001byx.2	-	13	2256	c.1998C>A	c.(1996-1998)ACC>ACA	p.T666T	KIAA0319L_uc001byw.2_Silent_p.T108T|KIAA0319L_uc010ohv.1_Silent_p.T308T	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	666	PKD 4.|Extracellular (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TGACAGTCAAGGTGAACACAT	0.498											OREG0013354	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	129					1.61572e-30	2.3356e-30	1	0
EIF2C4	192670	broad.mit.edu	37	1	36291379	36291379	+	Silent	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:36291379G>T	uc001bzj.1	+	5	778	c.588G>T	c.(586-588)GTG>GTT	p.V196V		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	196					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATCAGTCTGTGAGACCTGCCA	0.483													42	132					1.32136e-16	1.88673e-16	1	0
EIF2C3	192669	broad.mit.edu	37	1	36474571	36474571	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:36474571C>G	uc001bzp.2	+	8	1211	c.955C>G	c.(955-957)CTT>GTT	p.L319V	EIF2C3_uc001bzq.2_Missense_Mutation_p.L85V	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	319	PAZ.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AAAGTATACTCTTCAGCTGAA	0.438													10	63					0	0	0	0
GJA9	81025	broad.mit.edu	37	1	39340782	39340782	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:39340782G>C	uc001cct.1	-	2	1270	c.989C>G	c.(988-990)TCT>TGT	p.S330C	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	330	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			AATCTCATTAGAAAGTACAGT	0.313													21	48					0	0	0	0
BMP8B	656	broad.mit.edu	37	1	40230448	40230448	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:40230448G>A	uc001cdz.1	-	4	1091	c.715C>T	c.(715-717)CGG>TGG	p.R239W	BMP8B_uc001cea.1_Intron	NM_001720	NP_001711	P34820	BMP8B_HUMAN	bone morphogenetic protein 8B preproprotein	239					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	all_cancers(7;5.56e-14)|all_lung(5;3.88e-17)|all_epithelial(6;3.78e-16)|Lung NSC(20;7.03e-07)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;1.92e-17)|all cancers(16;4.03e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGTGGGGCCCGTTGACCCAGC	0.657													8	103					0	0	0	0
MFSD2A	84879	broad.mit.edu	37	1	40433512	40433512	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:40433512G>A	uc001cev.2	+	11	1352	c.1171G>A	c.(1171-1173)GAG>AAG	p.E391K	MFSD2A_uc010ojb.1_Missense_Mutation_p.E339K|MFSD2A_uc001ceu.2_Missense_Mutation_p.E378K|MFSD2A_uc010ojc.1_Missense_Mutation_p.E222K|MFSD2A_uc009vvy.2_Intron|MFSD2A_uc001cex.2_Missense_Mutation_p.E42K	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	391	Helical; (Potential).				transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						GGCCCTCATGGAGAGTAACCT	0.542													11	69					0	0	0	0
ZNF643	65243	broad.mit.edu	37	1	40928626	40928626	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:40928626C>T	uc001cfn.1	+	5	1267	c.970C>T	c.(970-972)CCG>TCG	p.P324S	ZNF643_uc001cfl.1_Missense_Mutation_p.P222S|ZNF643_uc001cfm.1_Missense_Mutation_p.P190S	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	324	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			ATCTCTTATTCCGCATCAGAG	0.403													9	48					0	0	0	0
TIE1	7075	broad.mit.edu	37	1	43778211	43778211	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:43778211C>G	uc001ciu.2	+	12	1945	c.1866C>G	c.(1864-1866)CTC>CTG	p.L622L	TIE1_uc010okd.1_Silent_p.L622L|TIE1_uc010oke.1_Silent_p.L577L|TIE1_uc009vwq.2_Silent_p.L578L|TIE1_uc010okf.1_Silent_p.L267L|TIE1_uc010okg.1_Silent_p.L267L	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	622	Fibronectin type-III 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity	p.L622L(1)		lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATGTGCAGCTCTACCACTGCA	0.692													5	86					0	0	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45671764	45671764	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:45671764C>G	uc001cnd.2	-	1	487	c.259G>C	c.(259-261)GAG>CAG	p.E87Q		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	87							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					GGGATCCGCTCGAAGCGCTCC	0.627													11	36					0	0	0	0
C1orf163	65260	broad.mit.edu	37	1	53153466	53153466	+	Missense_Mutation	SNP	C	T	T	rs141260822		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:53153466C>T	uc001cui.1	-	3	662	c.622G>A	c.(622-624)GAG>AAG	p.E208K		NM_023077	NP_075565	Q96BR5	SELR1_HUMAN	hypothetical protein LOC65260	208	Sel1-like 5.						binding				0						TTTAGCACCTCGGCCTTGGCC	0.532													25	76					0	0	0	0
SSX2IP	117178	broad.mit.edu	37	1	85127939	85127939	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:85127939G>A	uc001dkh.2	-	9	1144	c.869C>T	c.(868-870)TCT>TTT	p.S290F	SSX2IP_uc001dkf.2_Missense_Mutation_p.S263F|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.S263F|SSX2IP_uc001dki.2_Missense_Mutation_p.S290F|SSX2IP_uc010osa.1_Missense_Mutation_p.S263F|SSX2IP_uc001dkj.2_Missense_Mutation_p.S290F|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.S286F	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	290	Potential.				cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		AGAAAGAAGAGAAATCATTTC	0.338													13	122					0	0	0	0
ABCA4	24	broad.mit.edu	37	1	94512578	94512578	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:94512578C>G	uc001dqh.2	-	19	2919	c.2815G>C	c.(2815-2817)GAG>CAG	p.E939Q	ABCA4_uc010otn.1_Missense_Mutation_p.E865Q	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	939	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCACAGGGCTCAAAAATCTTT	0.507													15	236					0	0	0	0
ABCD3	5825	broad.mit.edu	37	1	94955518	94955518	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:94955518G>C	uc001dqn.3	+	15	1411	c.1309G>C	c.(1309-1311)GAT>CAT	p.D437H	ABCD3_uc010oto.1_Missense_Mutation_p.D461H|ABCD3_uc010otp.1_Missense_Mutation_p.D364H|ABCD3_uc009wdr.2_Missense_Mutation_p.D327H|ABCD3_uc001dqo.3_Missense_Mutation_p.D125H	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	437					peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		CATTATTGCAGATAACATTAT	0.323													14	88					0	0	0	0
KCNC4	3749	broad.mit.edu	37	1	110754320	110754320	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:110754320G>A	uc001dzh.2	+	1	256	c.199G>A	c.(199-201)GAC>AAC	p.D67N	KCNC4_uc001dzf.2_Missense_Mutation_p.D67N|KCNC4_uc009wfr.2_Missense_Mutation_p.D67N|KCNC4_uc001dzg.2_Missense_Mutation_p.D67N|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	67	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		CTGGCTGGCCGACCCCGACGG	0.522													6	25					0	0	0	0
KCND3	3752	broad.mit.edu	37	1	112524371	112524371	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:112524371G>A	uc001ebu.1	-	2	1458	c.978C>T	c.(976-978)TTC>TTT	p.F326F	KCND3_uc001ebv.1_Silent_p.F326F	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	326	Helical; Name=Segment S5; (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		TGGTGAGGGAGAAGAGAAGAA	0.552													9	47					0	0	0	0
AP4B1	10717	broad.mit.edu	37	1	114442908	114442908	+	Silent	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:114442908G>C	uc001eeb.2	-	5	875	c.732C>G	c.(730-732)CTC>CTG	p.L244L	uc001edv.1_RNA|AP4B1_uc001eec.2_Silent_p.L76L|AP4B1_uc001eed.2_Silent_p.L244L|AP4B1_uc010owp.1_Silent_p.L145L|AP4B1_uc001eea.1_Silent_p.L38L|AP4B1_uc010owq.1_Silent_p.L151L	NM_006594	NP_006585	Q9Y6B7	AP4B1_HUMAN	adaptor-related protein complex 4, beta 1	244					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|soluble fraction|trans-Golgi network	protein binding|protein transporter activity			ovary(3)|central_nervous_system(1)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.1e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTGCTCTTGAGGAAACTAT	0.473													5	56					0	0	0	0
FAM46C	54855	broad.mit.edu	37	1	118166279	118166279	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:118166279C>G	uc001ehe.2	+	2	988	c.789C>G	c.(787-789)ATC>ATG	p.I263M		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	263											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		AGGAAGAAATCAAAACTCTAG	0.507										Multiple Myeloma(3;1.13e-06)			14	38					0	0	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144952223	144952223	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:144952223C>T	uc001elw.3	-	4	787	c.496G>A	c.(496-498)GAG>AAG	p.E166K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E232K|PDE4DIP_uc001emc.1_Missense_Mutation_p.E166K|PDE4DIP_uc001emd.1_Missense_Mutation_p.E166K|PDE4DIP_uc001emg.1_Missense_Mutation_p.E166K|PDE4DIP_uc001emh.2_Missense_Mutation_p.E303K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	166	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GCCAGGGCCTCAGTGTATTGG	0.522			T	PDGFRB	MPD								15	157					0	0	0	0
PDIA3P	171423	broad.mit.edu	37	1	146650544	146650544	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:146650544G>A	uc001epg.1	+	1	1115	c.852G>A	c.(850-852)ATG>ATA	p.M284I		NR_002305				SubName: Full=cDNA FLJ53558, highly similar to Protein disulfide-isomerase A3 (EC 5.3.4.1);												0						ACAGGGTAATGATGGTGGCAA	0.408													10	36					0	0	0	0
RPRD2	23248	broad.mit.edu	37	1	150437148	150437148	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:150437148G>C	uc009wlr.2	+	10	1758	c.1557G>C	c.(1555-1557)GAG>GAC	p.E519D	RPRD2_uc010pcc.1_Missense_Mutation_p.E493D|RPRD2_uc001eup.3_Missense_Mutation_p.E493D	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	519	Ser-rich.						protein binding			ovary(1)	1						TCACCCCAGAGAGCATTCTGT	0.517											OREG0013786	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	19					0	0	0	0
GOLPH3L	55204	broad.mit.edu	37	1	150636160	150636160	+	Missense_Mutation	SNP	C	T	T	rs150623963		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:150636160C>T	uc001evj.2	-	3	480	c.263G>A	c.(262-264)CGA>CAA	p.R88Q	GOLPH3L_uc010pci.1_Intron	NM_018178	NP_060648	Q9H4A5	GLP3L_HUMAN	Golgi phosphoprotein 3-like	88						Golgi cisterna membrane				ovary(1)	1	all_cancers(9;3.09e-52)|all_epithelial(9;4.47e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000615)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;1.2e-23)|all cancers(9;4.81e-23)|OV - Ovarian serous cystadenocarcinoma(6;1.93e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			CAGATAGATTCGACCCCGCAT	0.502													23	61					0	0	0	0
FLG	2312	broad.mit.edu	37	1	152277823	152277823	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:152277823G>A	uc001ezu.1	-	3	9575	c.9539C>T	c.(9538-9540)TCA>TTA	p.S3180L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3180	Filaggrin 19.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGTGACGTGACACTGAGTG	0.562									Ichthyosis				100	139					0	0	0	0
FLG2	388698	broad.mit.edu	37	1	152327869	152327870	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:152327869_152327870CC>AT	uc001ezw.3	-	3	2465_2466	c.2392_2393GG>AT	c.(2392-2394)GGG>ATG	p.G798M	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	798	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGCCTGACCCATGTTGTCCA	0.52													43	409					0	0	0	0
CLK2	1196	broad.mit.edu	37	1	155238104	155238104	+	Silent	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:155238104T>C	uc001fjy.2	-	5	824	c.534A>G	c.(532-534)GTA>GTG	p.V178V	RAG1AP1_uc010pey.1_Intron|CLK2_uc001fjw.2_Silent_p.V177V|CLK2_uc001fjx.2_5'UTR|CLK2_uc009wqm.2_Silent_p.V178V	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	178	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CAACACATTGTACAACTCGGC	0.502								Other_conserved_DNA_damage_response_genes					15	51					0	0	0	0
RUSC1	23623	broad.mit.edu	37	1	155292421	155292421	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:155292421C>G	uc001fkj.2	+	2	1086	c.857C>G	c.(856-858)TCT>TGT	p.S286C	RAG1AP1_uc010pey.1_Intron|C1orf104_uc001fkh.1_5'Flank|C1orf104_uc001fki.2_Intron|RUSC1_uc001fkk.2_Missense_Mutation_p.S286C|RUSC1_uc009wqn.1_RNA|RUSC1_uc009wqo.1_5'Flank|RUSC1_uc001fkl.2_5'Flank|RUSC1_uc001fkp.2_5'Flank|RUSC1_uc001fkq.2_5'Flank|RUSC1_uc010pgb.1_5'Flank|RUSC1_uc009wqp.1_5'Flank|RUSC1_uc001fkn.2_5'Flank|RUSC1_uc001fko.2_5'Flank|RUSC1_uc001fkr.2_5'Flank|RUSC1_uc001fks.2_5'Flank	NM_001105203	NP_001098673	Q9BVN2	RUSC1_HUMAN	RUN and SH3 domain containing 1 isoform a	286						cytoplasm|nucleolus	SH3/SH2 adaptor activity			ovary(2)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;1.55e-10)|all cancers(21;4.15e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)			ATAACTGATTCTGGCTCGAAA	0.478													36	120					0	0	0	0
DAP3	7818	broad.mit.edu	37	1	155699156	155699156	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:155699156C>G	uc001flq.2	+	9	1011	c.842C>G	c.(841-843)CCG>CGG	p.P281R	DAP3_uc001flr.2_Missense_Mutation_p.P281R|DAP3_uc001fls.2_Missense_Mutation_p.P281R|DAP3_uc010pgl.1_Missense_Mutation_p.P240R|DAP3_uc001flt.2_Missense_Mutation_p.P247R|DAP3_uc001flu.2_Missense_Mutation_p.P254R|DAP3_uc010pgm.1_Missense_Mutation_p.P247R	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	281					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GATAAAAGCCCGGTAGGAAAA	0.438													18	59					0	0	0	0
HSPA6	3310	broad.mit.edu	37	1	161494658	161494658	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:161494658C>G	uc001gap.2	+	2	870	c.210C>G	c.(208-210)TTC>TTG	p.F70L	HSPA6_uc001gaq.2_Missense_Mutation_p.F70L	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	70					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			ACACCGTGTTCGATGCCAAGC	0.687													8	28					0	0	0	0
POGK	57645	broad.mit.edu	37	1	166819358	166819358	+	Silent	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:166819358G>C	uc001gdt.1	+	5	1662	c.1542G>C	c.(1540-1542)CTG>CTC	p.L514L	POGK_uc010ple.1_Silent_p.L429L|POGK_uc010plf.1_Silent_p.L396L	NM_017542	NP_060012	Q9P215	POGK_HUMAN	pogo transposable element with KRAB domain	514	DDE.				multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						acaagccactgaatgacagtg	0.05													4	12					0	0	0	0
TNN	63923	broad.mit.edu	37	1	175046766	175046766	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:175046766C>T	uc001gkl.1	+	2	325	c.212C>T	c.(211-213)TCG>TTG	p.S71L	TNN_uc010pmx.1_Missense_Mutation_p.S71L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	71					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GATGGGGCTTCGCTCTTGGCC	0.587													10	33					0	0	0	0
GLT25D2	23127	broad.mit.edu	37	1	184006371	184006371	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:184006371C>T	uc001gqr.2	-	1	493	c.121G>A	c.(121-123)GAG>AAG	p.E41K	GLT25D2_uc010poj.1_Missense_Mutation_p.E41K|GLT25D2_uc001gqs.2_Intron	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	41					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						ACCACCGGCTCCTCTCCGTCG	0.721													4	14					0	0	0	0
KCNT2	343450	broad.mit.edu	37	1	196309572	196309572	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:196309572G>T	uc001gtd.1	-	16	1742	c.1682C>A	c.(1681-1683)TCA>TAA	p.S561*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.S511*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.S561*|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Nonsense_Mutation_p.S561*|KCNT2_uc001gth.1_Nonsense_Mutation_p.S82*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	561	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTAAATGCTGAATTCTCTTC	0.358													8	37					3.09899e-07	4.2785e-07	1	0
LGR6	59352	broad.mit.edu	37	1	202245595	202245595	+	Missense_Mutation	SNP	G	A	A	rs142083498		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:202245595G>A	uc001gxu.2	+	5	590	c.590G>A	c.(589-591)CGC>CAC	p.R197H	LGR6_uc001gxv.2_Missense_Mutation_p.R145H|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Intron|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	197	LRR 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						GCCCTCAACCGCATCAGCCAC	0.637													9	33					0	0	0	0
G0S2	50486	broad.mit.edu	37	1	209849324	209849324	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:209849324C>T	uc001hhi.3	+	2	552	c.295C>T	c.(295-297)CGG>TGG	p.R99W		NM_015714	NP_056529	P27469	G0S2_HUMAN	G0/G1switch 2	99					cell cycle						0				OV - Ovarian serous cystadenocarcinoma(81;0.041)		CCTGTCCAACCGGCAGCACGC	0.662													9	30					0	0	0	0
OR2L8	391190	broad.mit.edu	37	1	248112521	248112521	+	Missense_Mutation	SNP	G	A	A	rs148005952	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:248112521G>A	uc001idt.1	+	1	362	c.362G>A	c.(361-363)CGT>CAT	p.R121H	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GCCTATGATCGTTACATTGCT	0.443													38	153					0	0	0	0
FRMD4A	55691	broad.mit.edu	37	10	13698869	13698869	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:13698869G>A	uc001ims.2	-	22	3072	c.2720C>T	c.(2719-2721)CCG>CTG	p.P907L	FRMD4A_uc009xjf.1_Missense_Mutation_p.P907L	NM_018027	NP_060497	Q9P2Q2	FRM4A_HUMAN	FERM domain containing 4A	907						cytoplasm|cytoskeleton	binding			ovary(1)|skin(1)|pancreas(1)	3						GCCCAGCGACGGAGTCCGCAG	0.751													6	10					0	0	0	0
LOC441666	441666	broad.mit.edu	37	10	42832499	42832499	+	RNA	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:42832499C>G	uc010qey.1	-	3		c.1476G>C				NR_024380				Homo sapiens noncoding mRNA sequence.												0						TCTCCCCTATCAATTATGTTT	0.363													2	9					0	0	0	0
MARCH8	220972	broad.mit.edu	37	10	45956749	45956749	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:45956749G>A	uc001jci.1	-	5	592	c.353C>T	c.(352-354)TCC>TTC	p.S118F	MARCH8_uc001jch.2_Missense_Mutation_p.S400F|MARCH8_uc001jcj.1_Missense_Mutation_p.S118F|MARCH8_uc001jck.1_Missense_Mutation_p.S118F|MARCH8_uc001jcg.1_5'UTR	NM_001002266	NP_001002266	Q5T0T0	MARH8_HUMAN	cellular modulator of immune recognition isoform	118	RING-CH-type.					cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding				0						GCGCGTGTCGGAGCTCTTGAT	0.572													5	45					0	0	0	0
NDST2	8509	broad.mit.edu	37	10	75567373	75567373	+	Silent	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:75567373A>G	uc001jvk.2	-	3	1578	c.774T>C	c.(772-774)CGT>CGC	p.R258R	NDST2_uc010qks.1_5'Flank|NDST2_uc010qkt.1_Silent_p.R135R|NDST2_uc009xro.2_5'Flank|NDST2_uc010qku.1_Silent_p.R135R	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	258	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					GCCGGGCCCGACGAAGAACTG	0.557													8	36					0	0	0	0
CAMK2G	818	broad.mit.edu	37	10	75608802	75608802	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:75608802G>C	uc001jvv.1	-	7	586	c.462C>G	c.(460-462)ATC>ATG	p.I154M	CAMK2G_uc001jvm.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvo.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvq.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvr.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvp.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvs.1_Missense_Mutation_p.I162M|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.I140M|CAMK2G_uc010qkv.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	162	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					CCTGTACTTCGATGGCTAGGC	0.562											OREG0020267	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	111					0	0	0	0
ZMIZ1	57178	broad.mit.edu	37	10	81063878	81063878	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:81063878C>T	uc001kaf.2	+	19	2804	c.2232C>T	c.(2230-2232)ATC>ATT	p.I744I	ZMIZ1_uc001kag.2_Silent_p.I620I|ZMIZ1_uc010qlq.1_5'Flank	NM_020338	NP_065071	Q9ULJ6	ZMIZ1_HUMAN	retinoic acid induced 17	744	SP-RING-type.				transcription, DNA-dependent	cytoplasm|nuclear speck	zinc ion binding			ovary(2)|breast(1)|skin(1)	4	all_cancers(46;0.0292)|Breast(12;8.52e-05)|all_epithelial(25;0.000854)|Prostate(51;0.00985)		Epithelial(14;0.00256)|all cancers(16;0.00726)|Colorectal(32;0.229)			AGTGCCCCATCACATTCCGGC	0.612													10	33					0	0	0	0
PLCE1	51196	broad.mit.edu	37	10	96005912	96005912	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:96005912C>G	uc001kjk.2	+	8	3264	c.2630C>G	c.(2629-2631)TCT>TGT	p.S877C	PLCE1_uc010qnx.1_Missense_Mutation_p.S877C|PLCE1_uc001kjm.2_Missense_Mutation_p.S569C	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	877					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ACACACCTCTCTGCCCGCTGC	0.582													3	49					0	0	0	0
NOC3L	64318	broad.mit.edu	37	10	96109029	96109029	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:96109029C>G	uc001kjq.1	-	10	1323	c.1235G>C	c.(1234-1236)AGA>ACA	p.R412T	NOC3L_uc009xuk.1_Missense_Mutation_p.R197T	NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	412						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				TTCGTAATTTCTGCCCTTCAC	0.328													13	45					0	0	0	0
RRP12	23223	broad.mit.edu	37	10	99131844	99131844	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:99131844G>A	uc001knf.2	-	20	2468	c.2329C>T	c.(2329-2331)CGG>TGG	p.R777W	RRP12_uc009xvl.2_5'UTR|RRP12_uc009xvm.2_Missense_Mutation_p.R495W|RRP12_uc010qou.1_Missense_Mutation_p.R716W|RRP12_uc009xvn.2_Missense_Mutation_p.R677W	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	777						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		AGGTAGGGCCGGATGGTGGAG	0.622													12	41					0	0	0	0
ADRA2A	150	broad.mit.edu	37	10	112837979	112837979	+	Silent	SNP	G	C	C	rs12416313	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:112837979G>C	uc001kzo.2	+	1	1190	c.225G>C	c.(223-225)ACG>ACC	p.T75T		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	60	Cytoplasmic (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	CCGTGTTCACGAGCCGCGCGC	0.647													6	48					0	0	0	0
HMX3	340784	broad.mit.edu	37	10	124896741	124896741	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:124896741G>A	uc010quc.1	+	2	568	c.568G>A	c.(568-570)GAA>AAA	p.E190K		NM_001105574	NP_001099044	A6NHT5	HMX3_HUMAN	H6 family homeobox 3	190					cell differentiation	nucleus	sequence-specific DNA binding transcription factor activity				0		all_neural(114;0.0765)|Colorectal(57;0.102)|all_lung(145;0.11)|Lung NSC(174;0.163)		Colorectal(40;0.122)|COAD - Colon adenocarcinoma(40;0.141)		AAAGGAAGGCGAAGCGGCGCC	0.652													4	10					0	0	0	0
C10orf137	26098	broad.mit.edu	37	10	127409947	127409947	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:127409947C>G	uc001liq.1	+	2	576	c.283C>G	c.(283-285)CTT>GTT	p.L95V	uc001lim.1_5'Flank|C10orf137_uc001lin.2_Missense_Mutation_p.L95V|C10orf137_uc001lio.1_Missense_Mutation_p.L95V|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	95			L -> F (in a colorectal cancer sample; somatic mutation).		regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding	p.L95F(1)		ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AACTACCATTCTTGGCAACAG	0.438													10	53					0	0	0	0
LRRC27	80313	broad.mit.edu	37	10	134165110	134165110	+	Splice_Site	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:134165110G>A	uc010quw.1	+	7	1122	c.927_splice	c.e7-1	p.R309_splice	LRRC27_uc001llf.2_Splice_Site_p.E341_splice|LRRC27_uc010quv.1_Splice_Site_p.R309_splice|LRRC27_uc001llg.2_Splice_Site|LRRC27_uc001lli.2_Splice_Site_p.R309_splice|LRRC27_uc001llj.2_Splice_Site_p.R247_splice|LRRC27_uc001llk.3_Splice_Site_p.R182_splice	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a											ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		TGTAATTTTAGAAGGAAGACA	0.483													63	213					0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1096554	1096554	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:1096554G>A	uc001lsx.1	+	37	13692	c.13665G>A	c.(13663-13665)ATG>ATA	p.M4555I		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4555	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCGTGCATATGATGCCCATGC	0.637													5	20					0	0	0	0
OR52K2	119774	broad.mit.edu	37	11	4470668	4470668	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:4470668C>G	uc001lyz.1	+	1	99	c.99C>G	c.(97-99)TTC>TTG	p.F33L		NM_001005172	NP_001005172	Q8NGK3	O52K2_HUMAN	olfactory receptor, family 52, subfamily K,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.48e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0821)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATCCCTTTCTGCTTAGCAT	0.517													7	70					0	0	0	0
CNGA4	1262	broad.mit.edu	37	11	6262988	6262988	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:6262988G>A	uc001mco.2	+	5	1352	c.1245G>A	c.(1243-1245)GAG>GAA	p.E415E	CNGA4_uc010raa.1_Silent_p.E184E|CNGA4_uc001mcn.2_Silent_p.E375E	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	415	cNMP.|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTTTGGGGAGATCAGCATCA	0.552													41	69					0	0	0	0
SBF2	81846	broad.mit.edu	37	11	9810748	9810748	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:9810748C>T	uc001mib.2	-	35	4978	c.4840G>A	c.(4840-4842)GAA>AAA	p.E1614K	uc001mhz.1_Intron|SBF2_uc001mid.2_Missense_Mutation_p.E258K|SBF2_uc001mic.2_5'Flank|uc001mie.3_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	1614					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GGCCCAGCTTCTCCAGCCAGG	0.537													15	50					0	0	0	0
SBF2	81846	broad.mit.edu	37	11	9810835	9810835	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:9810835C>T	uc001mib.2	-	35	4891	c.4753G>A	c.(4753-4755)GAA>AAA	p.E1585K	uc001mhz.1_Intron|SBF2_uc001mid.2_Missense_Mutation_p.E229K|SBF2_uc001mic.2_5'Flank|uc001mie.3_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	1585					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		AGGGTCTCTTCTATGTAGTAA	0.488													19	75					0	0	0	0
OR4C46	119749	broad.mit.edu	37	11	51515816	51515816	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:51515816C>T	uc010ric.1	+	1	535	c.535C>T	c.(535-537)CTG>TTG	p.L179L		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TATGTGTGATCTGAACCCTTT	0.458													23	98					0	0	0	0
APLNR	187	broad.mit.edu	37	11	57003609	57003609	+	Silent	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:57003609G>T	uc001njo.2	-	1	1319	c.870C>A	c.(868-870)ATC>ATA	p.I290I	APLNR_uc001njn.3_RNA	NM_005161	NP_005152	P35414	APJ_HUMAN	apelin receptor	290	Helical; Name=7; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			lung(5)|ovary(1)	6						AGTAGGGGAAGATGTTCATGA	0.587													5	46					1.23904e-05	1.68671e-05	1	0
OR5B17	219965	broad.mit.edu	37	11	58125821	58125821	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:58125821G>C	uc010rke.1	-	1	722	c.722C>G	c.(721-723)TCT>TGT	p.S241C		NM_001005489	NP_001005489	Q8NGF7	OR5BH_HUMAN	olfactory receptor, family 5, subfamily B,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AATGAGGTGAGAACCACAGGT	0.393													8	29					0	0	0	0
DAGLA	747	broad.mit.edu	37	11	61511546	61511546	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:61511546C>T	uc001nsa.2	+	20	2825	c.2714C>T	c.(2713-2715)TCG>TTG	p.S905L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	905	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CTGGGGGACTCGCCCAGTCCT	0.652													9	37					0	0	0	0
HNRNPUL2	221092	broad.mit.edu	37	11	62490138	62490138	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:62490138C>G	uc001nuw.2	-	6	1223	c.1030G>C	c.(1030-1032)GAA>CAA	p.E344Q	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	344	B30.2/SPRY.				cell killing	nucleus	ATP binding|nucleic acid binding				0						TGTCCATTTTCTGCCTTGAGT	0.428													13	55					0	0	0	0
FKBP2	2286	broad.mit.edu	37	11	64009964	64009964	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:64009964C>G	uc001nyy.2	+	2	301	c.105C>G	c.(103-105)GTC>GTG	p.V35V	FKBP2_uc010rnh.1_Silent_p.V35V|FKBP2_uc001nyz.2_Silent_p.V35V	NM_004470	NP_004461	P26885	FKBP2_HUMAN	FK506 binding protein 2, 13kDa precursor	35					protein folding	endoplasmic reticulum membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding				0						AGATCGGGGTCAAGAAGCGGG	0.632													7	76					0	0	0	0
CDCA5	113130	broad.mit.edu	37	11	64851416	64851416	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:64851416G>C	uc001ocp.2	-	1	200	c.35C>G	c.(34-36)GCT>GGT	p.A12G	ZFPL1_uc009yqa.2_5'Flank|ZFPL1_uc001ocq.1_5'Flank|ZFPL1_uc010rnx.1_5'Flank	NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	12					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						GGAGCGCTGAGCGGCTCCTCC	0.602													14	51					0	0	0	0
Unknown	0	broad.mit.edu	37	11	64884391	64884391	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:64884391G>C	uc009yqb.1	+	1	517	c.262G>C	c.(262-264)GAG>CAG	p.E88Q	ZNHIT2_uc001ocw.2_Silent_p.L245L					Homo sapiens cDNA clone IMAGE:40024031.																		CGGAAACGCCGAGCAGTGTGG	0.662													7	13					0	0	0	0
MAP3K11	4296	broad.mit.edu	37	11	65380700	65380700	+	Silent	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:65380700G>T	uc001oew.2	-	1	1021	c.528C>A	c.(526-528)ATC>ATA	p.I176I	MAP3K11_uc010rol.1_5'Flank	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	176	Protein kinase.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						TGAGGGCAATGATGTTGGGGT	0.667													7	51					0.00307968	0.00410624	1	0
RPS6KB2	6199	broad.mit.edu	37	11	67200087	67200087	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:67200087G>A	uc001old.2	+	6	556	c.474G>A	c.(472-474)ACG>ACA	p.T158T	RPS6KB2_uc001olf.2_5'UTR|RPS6KB2_uc001olg.2_Silent_p.T158T|RPS6KB2_uc009yrq.2_5'UTR|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_RNA|RPS6KB2_uc009yrr.2_Missense_Mutation_p.R23H	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	158	Protein kinase.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			AGCTCTTCACGCATCTGGAGC	0.468													22	74					0	0	0	0
PPFIA1	8500	broad.mit.edu	37	11	70208451	70208451	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:70208451G>A	uc001opo.2	+	21	2920	c.2722G>A	c.(2722-2724)GGG>AGG	p.G908R	PPFIA1_uc001opn.1_Missense_Mutation_p.G908R|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_Missense_Mutation_p.G16R	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	908	SAM 1.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			CGTGAAAAGCGGGGCCATCAT	0.607													24	142					0	0	0	0
LAYN	143903	broad.mit.edu	37	11	111428359	111428359	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:111428359G>A	uc001plr.1	+	7	1112	c.776G>A	c.(775-777)TGT>TAT	p.C259Y	LAYN_uc001plp.1_Missense_Mutation_p.C251Y|LAYN_uc001plq.1_Missense_Mutation_p.C259Y|LAYN_uc001pls.1_Missense_Mutation_p.C251Y|LAYN_uc010rwg.1_Missense_Mutation_p.C106Y|LAYN_uc010rwh.1_Missense_Mutation_p.C107Y	NM_178834	NP_849156	Q6UX15	LAYN_HUMAN	layilin	259	Cytoplasmic (Potential).					cell surface|integral to membrane|ruffle	hyaluronic acid binding|sugar binding				0		all_cancers(61;9.06e-10)|all_epithelial(67;1.34e-05)|Melanoma(852;1.74e-05)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.086)		Epithelial(105;1.5e-06)|BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|all cancers(92;2.45e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0476)		GTTTGGATCTGTAGAAAAAGG	0.433													40	422					0	0	0	0
CRTAM	56253	broad.mit.edu	37	11	122720855	122720855	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:122720855G>A	uc001pyj.2	+	2	126	c.126G>A	c.(124-126)CTG>CTA	p.L42L		NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	42	Ig-like V-type.|Extracellular (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TCACTTCTCTGAGGAAGAACT	0.483													22	29					0	0	0	0
Unknown	0	broad.mit.edu	37	11	124135413	124135413	+	IGR	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:124135413G>T								OR8G2 (39103 upstream) : OR8D1 (44324 downstream)																							TTACATTAATGAGTTACTGAT	0.378													40	90					1.03484e-13	1.47042e-13	1	0
C12orf4	57102	broad.mit.edu	37	12	4639069	4639069	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:4639069C>T	uc001qms.2	-	4	560	c.472G>A	c.(472-474)GAA>AAA	p.E158K	C12orf4_uc001qmt.2_Missense_Mutation_p.E158K	NM_020374	NP_065107	Q9NQ89	CL004_HUMAN	hypothetical protein LOC57102	158											0			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)	BRCA - Breast invasive adenocarcinoma(232;0.0281)		ACATCTCTTTCACCAATCAGT	0.343													12	59					0	0	0	0
SLC2A3	6515	broad.mit.edu	37	12	8074141	8074141	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:8074141G>A	uc001qtr.2	-	10	1621	c.1359C>T	c.(1357-1359)ACC>ACT	p.T453T		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	453	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		TCCTGCCACGGGTCTCAGGGA	0.488													21	79					0	0	0	0
ATF7IP	55729	broad.mit.edu	37	12	14578131	14578131	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:14578131G>T	uc001rbw.2	+	2	1440	c.1282G>T	c.(1282-1284)GAC>TAC	p.D428Y	ATF7IP_uc010shs.1_Missense_Mutation_p.D428Y|ATF7IP_uc001rbu.2_Missense_Mutation_p.D428Y|ATF7IP_uc001rbv.1_Missense_Mutation_p.D428Y|ATF7IP_uc001rbx.2_Missense_Mutation_p.D428Y|ATF7IP_uc010sht.1_Missense_Mutation_p.D428Y|ATF7IP_uc001rby.3_Missense_Mutation_p.D428Y|ATF7IP_uc001rbz.1_Missense_Mutation_p.D428Y|ATF7IP_uc001rca.2_Missense_Mutation_p.D428Y|ATF7IP_uc001rcb.2_Missense_Mutation_p.D39Y	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	428	Glu-rich.				DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						AGAAAATACAGACTCTATGGA	0.333													9	49					0.00448238	0.00596289	1	0
C12orf60	144608	broad.mit.edu	37	12	14976214	14976214	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:14976214C>G	uc001rcj.3	+	2	549	c.345C>G	c.(343-345)TTC>TTG	p.F115L		NM_175874	NP_787070	Q5U649	CL060_HUMAN	hypothetical protein LOC144608	115										ovary(1)|central_nervous_system(1)	2						AAGAAGTATTCAAAAGTGCCC	0.433													25	75					0	0	0	0
DDX11	1663	broad.mit.edu	37	12	31255377	31255377	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:31255377G>C	uc001rjt.1	+	23	2539	c.2288G>C	c.(2287-2289)AGA>ACA	p.R763T	DDX11_uc001rjr.1_Missense_Mutation_p.R763T|DDX11_uc001rjs.1_Missense_Mutation_p.R713T|DDX11_uc001rju.1_Missense_Mutation_p.R435T|DDX11_uc001rjv.1_Missense_Mutation_p.R763T|DDX11_uc001rjw.1_Missense_Mutation_p.R737T|DDX11_uc009zjn.1_RNA|DDX11_uc009zjo.1_5'UTR	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	763					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GGCCAGGAGAGAGGCCAGGTG	0.562										Multiple Myeloma(12;0.14)			28	98					0	0	0	0
OR6C76	390326	broad.mit.edu	37	12	55820433	55820433	+	Silent	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:55820433C>A	uc010spm.1	+	1	396	c.396C>A	c.(394-396)ATC>ATA	p.I132I		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATACAACCATCATGAGTGACA	0.433													22	108					3.76869e-24	5.43436e-24	1	0
ITGA7	3679	broad.mit.edu	37	12	56096885	56096885	+	Missense_Mutation	SNP	G	A	A	rs143749139	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:56096885G>A	uc001shh.2	-	2	504	c.284C>T	c.(283-285)CCG>CTG	p.P95L	ITGA7_uc001shg.2_Missense_Mutation_p.P95L|ITGA7_uc010sps.1_Intron|ITGA7_uc009znx.2_5'Flank	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	95	FG-GAP 1.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CAGGCTCAACGGGCAAGCGAA	0.652													19	61					0	0	0	0
ESYT1	23344	broad.mit.edu	37	12	56522298	56522298	+	Silent	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:56522298G>C	uc001sjq.2	+	1	245	c.195G>C	c.(193-195)CTG>CTC	p.L65L	ESYT1_uc001sjr.2_Silent_p.L65L	NM_015292	NP_056107	Q9BSJ8	ESYT1_HUMAN	extended synaptotagmin-like protein 1	65	Helical; (Potential).					integral to membrane				ovary(4)|skin(1)	5						TGCTGGTGCTGATACCTGTGT	0.672													5	15					0	0	0	0
AGAP2	116986	broad.mit.edu	37	12	58128428	58128428	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:58128428G>A	uc001spq.2	-	3	1262	c.1262C>T	c.(1261-1263)TCG>TTG	p.S421L	AGAP2_uc001spp.2_Missense_Mutation_p.S421L|AGAP2_uc001spr.2_Missense_Mutation_p.S85L	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	421	G domain.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						GTGGATGAGCGATGACTTCCC	0.537													51	151					0	0	0	0
PTPRB	5787	broad.mit.edu	37	12	70963581	70963581	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:70963581G>A	uc001swb.3	-	12	2884	c.2854C>T	c.(2854-2856)CAG>TAG	p.Q952*	PTPRB_uc010sto.1_Nonsense_Mutation_p.Q952*|PTPRB_uc010stp.1_Nonsense_Mutation_p.Q862*|PTPRB_uc001swc.3_Nonsense_Mutation_p.Q1170*|PTPRB_uc001swa.3_Nonsense_Mutation_p.Q1082*|PTPRB_uc001swd.3_Nonsense_Mutation_p.Q1169*|PTPRB_uc009zrr.1_Nonsense_Mutation_p.Q1049*	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	952	Fibronectin type-III 11.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GGAATAGTCTGAGAGTCAACC	0.547													12	55					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78574787	78574787	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:78574787C>G	uc001syp.2	+	30	5827	c.5654C>G	c.(5653-5655)TCT>TGT	p.S1885C	NAV3_uc001syo.2_Missense_Mutation_p.S1863C|NAV3_uc010sub.1_Missense_Mutation_p.S1342C|NAV3_uc009zsf.2_Missense_Mutation_p.S694C	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1885	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TTAGGACTTTCTCTAAACAAT	0.483										HNSCC(70;0.22)			21	89					0	0	0	0
METAP2	10988	broad.mit.edu	37	12	95868071	95868071	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:95868071G>C	uc001tec.2	+	1	250	c.116G>C	c.(115-117)AGA>ACA	p.R39T	METAP2_uc010suv.1_Missense_Mutation_p.R39T|METAP2_uc009ztd.2_Missense_Mutation_p.R39T|METAP2_uc001ted.2_Missense_Mutation_p.R39T|METAP2_uc001tef.2_Missense_Mutation_p.R39T|METAP2_uc001tee.2_RNA	NM_006838	NP_006829	P50579	AMPM2_HUMAN	methionyl aminopeptidase 2	39	Arg/Lys-rich (basic).				N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0					L-Methionine(DB00134)	AAGAAAAAAAGACGAAAGAAG	0.557													15	68					0	0	0	0
C12orf63	374467	broad.mit.edu	37	12	97078851	97078851	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:97078851G>C	uc001tet.1	+	9	1202	c.1124G>C	c.(1123-1125)AGA>ACA	p.R375T		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	375										skin(6)|ovary(1)	7						GACATATTCAGAAAACCAGAC	0.433													8	32					0	0	0	0
ANKS1B	56899	broad.mit.edu	37	12	99793498	99793498	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:99793498C>T	uc001tge.1	-	12	2084	c.1667G>A	c.(1666-1668)TGC>TAC	p.C556Y	ANKS1B_uc001tgf.1_Missense_Mutation_p.C136Y|ANKS1B_uc009ztt.1_Missense_Mutation_p.C522Y	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	556						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AAAGCTTGTGCACCCTGTAGA	0.428													25	74					0	0	0	0
NAA25	80018	broad.mit.edu	37	12	112492367	112492367	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:112492367C>T	uc001ttm.2	-	14	1473	c.1453G>A	c.(1453-1455)GAG>AAG	p.E485K	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Missense_Mutation_p.E457K|NAA25_uc009zwa.1_Missense_Mutation_p.E485K	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	485						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						ACAGTGGTCTCATCACCTAGA	0.433													9	15					0	0	0	0
C12orf51	283450	broad.mit.edu	37	12	112605283	112605283	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:112605283G>A	uc009zwc.2	-	65	11124	c.11106C>T	c.(11104-11106)TTC>TTT	p.F3702F		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GCTGCCCCAGGAAGTGCAGCA	0.662													14	43					0	0	0	0
EP400	57634	broad.mit.edu	37	12	132554096	132554096	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:132554096G>A	uc001ujn.2	+	50	8966	c.8931G>A	c.(8929-8931)GCG>GCA	p.A2977A	EP400_uc001ujl.2_Silent_p.A2976A|EP400_uc001ujm.2_Silent_p.A2896A|EP400_uc001ujp.2_Silent_p.A187A	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	3013					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		CCTACGCCGCGCAGCCGGCCC	0.647													18	106					0	0	0	0
MPHOSPH8	54737	broad.mit.edu	37	13	20235942	20235942	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr13:20235942G>T	uc001umh.2	+	8	1905	c.1896G>T	c.(1894-1896)AAG>AAT	p.K632N	MPHOSPH8_uc001umg.2_Missense_Mutation_p.K632N	NM_017520	NP_059990	Q99549	MPP8_HUMAN	M-phase phosphoprotein 8	632					cell cycle	cytoplasm|nucleus					0		all_cancers(29;2.83e-16)|all_lung(29;1.16e-17)|all_epithelial(30;8.13e-16)|Lung NSC(5;6.91e-15)|Lung SC(185;0.0367)		all cancers(112;8.43e-05)|Epithelial(112;0.000426)|OV - Ovarian serous cystadenocarcinoma(117;0.00596)|Lung(94;0.015)|LUSC - Lung squamous cell carcinoma(192;0.0795)		GTCGGCAGAAGAACGGGACCA	0.562													33	76					5.91797e-21	8.51254e-21	1	0
MTMR6	9107	broad.mit.edu	37	13	25840348	25840348	+	Silent	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr13:25840348G>C	uc001uqf.3	-	4	700	c.381C>G	c.(379-381)CTC>CTG	p.L127L	MTMR6_uc001uqe.1_Silent_p.L127L	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	127	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		CGAGATCAATGAGCTGCCAGC	0.393													12	23					0	0	0	0
MTMR6	9107	broad.mit.edu	37	13	25842002	25842002	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr13:25842002C>G	uc001uqf.3	-	3	538	c.219G>C	c.(217-219)AAG>AAC	p.K73N	MTMR6_uc001uqe.1_Missense_Mutation_p.K73N	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	73						cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		TTCTGAAGTTCTTGCACTGTA	0.393													12	29					0	0	0	0
ELF1	1997	broad.mit.edu	37	13	41517197	41517197	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr13:41517197G>A	uc001uxs.2	-	7	1070	c.697C>T	c.(697-699)CGA>TGA	p.R233*	ELF1_uc010tfc.1_Nonsense_Mutation_p.R209*|ELF1_uc010acd.2_Nonsense_Mutation_p.R126*	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	233	ETS.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		CCTTTCTCTCGCTGGGTCCAC	0.408													16	46					0	0	0	0
RNASE9	390443	broad.mit.edu	37	14	21025129	21025129	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:21025129C>G	uc010aho.2	-	4	259	c.100G>C	c.(100-102)GAT>CAT	p.D34H	RNASE9_uc001vxq.3_Missense_Mutation_p.D39H|RNASE9_uc010ahp.2_Missense_Mutation_p.D39H|RNASE9_uc010ahq.2_Missense_Mutation_p.D39H|RNASE9_uc010ahr.2_Missense_Mutation_p.D39H|RNASE9_uc010ahs.2_Missense_Mutation_p.D34H|RNASE9_uc010aht.2_Missense_Mutation_p.D34H|RNASE9_uc010ahu.2_Missense_Mutation_p.D34H	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	34						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		TCTGGGAAATCAAAATCTGTA	0.438													14	45					0	0	0	0
PSMB5	5693	broad.mit.edu	37	14	23495350	23495350	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:23495350G>C	uc001wii.2	-	3	1004	c.740C>G	c.(739-741)TCC>TGC	p.S247C	PSMB5_uc001wij.2_3'UTR|PSMB5_uc010tni.1_Missense_Mutation_p.S144C	NM_002797	NP_002788	P28074	PSB5_HUMAN	proteasome beta 5 subunit isoform 1	247					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus	protein binding|threonine-type endopeptidase activity			ovary(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.0121)	Bortezomib(DB00188)	ATTGTCACTGGAGACTCGGAT	0.552													4	158					0	0	0	0
AKAP6	9472	broad.mit.edu	37	14	33147558	33147558	+	Silent	SNP	T	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:33147558T>G	uc001wrq.2	+	8	2942	c.2772T>G	c.(2770-2772)GCT>GCG	p.A924A	AKAP6_uc010aml.2_Silent_p.A921A	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	924					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AAAGAGATGCTGTTGAGCAGA	0.438													4	23					0	0	0	0
AKAP6	9472	broad.mit.edu	37	14	33293569	33293569	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:33293569G>A	uc001wrq.2	+	13	6720	c.6550G>A	c.(6550-6552)GAA>AAA	p.E2184K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2184					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGTTCCCAGCGAAGCTGCAAT	0.458													8	22					0	0	0	0
L2HGDH	79944	broad.mit.edu	37	14	50750625	50750625	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:50750625C>T	uc001wxu.2	-	5	746	c.667G>A	c.(667-669)GAA>AAA	p.E223K	L2HGDH_uc010tqn.1_Missense_Mutation_p.E223K|L2HGDH_uc010tqo.1_Missense_Mutation_p.E223K	NM_024884	NP_079160	Q9H9P8	L2HDH_HUMAN	L-2-hydroxyglutarate dehydrogenase precursor	223					2-oxoglutarate metabolic process|cellular protein metabolic process	integral to mitochondrial inner membrane	2-hydroxyglutarate dehydrogenase activity			ovary(2)	2	all_epithelial(31;0.000599)|Breast(41;0.0102)					TTAGCCATTTCAATACCTTTT	0.338													19	55					0	0	0	0
PYGL	5836	broad.mit.edu	37	14	51411035	51411035	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:51411035C>T	uc001wyu.2	-	1	214	c.87G>A	c.(85-87)AAG>AAA	p.K29K	PYGL_uc010tqq.1_Silent_p.K29K|PYGL_uc001wyv.2_5'UTR|PYGL_uc001wyw.3_Silent_p.K29K	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	29					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TGAAACTCTTCTTCAGCTCTG	0.632													18	38					0	0	0	0
ADAM20	8748	broad.mit.edu	37	14	70991263	70991263	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:70991263C>G	uc001xme.2	-	2	607	c.362G>C	c.(361-363)AGA>ACA	p.R121T		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	71					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		GACAATGTATCTCTGTCCCCC	0.532													23	73					0	0	0	0
ADAM20	8748	broad.mit.edu	37	14	70991307	70991307	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:70991307C>A	uc001xme.2	-	2	563	c.318G>T	c.(316-318)AAG>AAT	p.K106N		NM_003814	NP_003805	O43506	ADA20_HUMAN	ADAM metallopeptidase domain 20 preproprotein	56					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.133)|Kidney(31;0.188)	all cancers(60;0.00294)|BRCA - Breast invasive adenocarcinoma(234;0.00668)|OV - Ovarian serous cystadenocarcinoma(108;0.0344)		ATCCAGGAGCCTTTGCACCTC	0.522													22	69					1.50039e-11	2.11139e-11	1	0
PCNX	22990	broad.mit.edu	37	14	71576209	71576209	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:71576209C>G	uc001xmo.2	+	35	7231	c.6785C>G	c.(6784-6786)TCT>TGT	p.S2262C	PCNX_uc010are.1_Missense_Mutation_p.S2151C|PCNX_uc010arf.1_Missense_Mutation_p.S1050C|PCNX_uc001xmp.2_Missense_Mutation_p.S346C	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2262						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		ATCAACCTGTCTAAAAGGAAA	0.408													11	37					0	0	0	0
PCNX	22990	broad.mit.edu	37	14	71576247	71576247	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:71576247C>T	uc001xmo.2	+	35	7269	c.6823C>T	c.(6823-6825)CGG>TGG	p.R2275W	PCNX_uc010are.1_Missense_Mutation_p.R2164W|PCNX_uc010arf.1_Missense_Mutation_p.R1063W|PCNX_uc001xmp.2_Missense_Mutation_p.R359W	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2275						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TGAAGGAATCCGGTTAAAAGC	0.473													12	47					0	0	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055532	72055532	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:72055532G>A	uc001xms.2	+	2	1291	c.943G>A	c.(943-945)GAT>AAT	p.D315N	SIPA1L1_uc001xmt.2_Missense_Mutation_p.D315N|SIPA1L1_uc001xmu.2_Missense_Mutation_p.D315N|SIPA1L1_uc001xmv.2_Missense_Mutation_p.D315N	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	315					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		AGATCTTGAAGATAACCGATC	0.408													14	50					0	0	0	0
TMED10	10972	broad.mit.edu	37	14	75643164	75643164	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:75643164G>C	uc001xrm.1	-	1	186	c.119C>G	c.(118-120)TCT>TGT	p.S40C	TMED10_uc010ash.1_RNA	NM_006827	NP_006818	P49755	TMEDA_HUMAN	transmembrane emp24 domain-containing protein 10	40	Lumenal (Potential).				protein transport|regulated secretory pathway|vesicle targeting, to, from or within Golgi	cis-Golgi network|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|melanosome|microsome|zymogen granule membrane	protein binding				0				BRCA - Breast invasive adenocarcinoma(234;0.0126)		GCACTTGCGAGAGTTAATGGG	0.622													5	100					0	0	0	0
VASH1	22846	broad.mit.edu	37	14	77239553	77239553	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:77239553A>G	uc001xst.2	+	4	1459	c.529A>G	c.(529-531)ATT>GTT	p.I177V	VASH1_uc001xss.2_Missense_Mutation_p.M177V	NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1	177					cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		GATCCTGGGAATGTATCCTTC	0.388													12	35					0	0	0	0
C14orf49	161176	broad.mit.edu	37	14	95932570	95932570	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:95932570C>T	uc001yei.3	-	3	340	c.325G>A	c.(325-327)GAG>AAG	p.E109K	C14orf49_uc010avi.2_Missense_Mutation_p.E109K|C14orf49_uc001yej.1_Missense_Mutation_p.E109K	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	109	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CACACCCACTCGATGCGGCTG	0.617													12	73					0	0	0	0
SETD3	84193	broad.mit.edu	37	14	99925500	99925500	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:99925500A>G	uc001ygc.2	-	5	538	c.368T>C	c.(367-369)GTT>GCT	p.V123A	SETD3_uc001ygd.2_Missense_Mutation_p.V123A|SETD3_uc001ygf.2_Missense_Mutation_p.V123A	NM_032233	NP_115609	Q86TU7	SETD3_HUMAN	SET domain containing 3 isoform a	123	SET.				peptidyl-lysine dimethylation|peptidyl-lysine monomethylation|peptidyl-lysine trimethylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	histone methyltransferase activity (H3-K36 specific)|transcription coactivator activity				0		all_cancers(154;0.224)|all_epithelial(191;0.0644)|Melanoma(154;0.0866)				TTTTCGTGGAACCCATAAAAA	0.343													12	92					0	0	0	0
RAGE	5891	broad.mit.edu	37	14	102732245	102732245	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:102732245C>G	uc001ylm.2	-	3	353	c.127G>C	c.(127-129)GAG>CAG	p.E43Q	RAGE_uc010txv.1_Intron|RAGE_uc001yln.2_5'UTR	NM_014226	NP_055041	Q9UQ07	MOK_HUMAN	MAPK/MAK/MRK overlapping kinase	43	Protein kinase.				signal transduction	Golgi apparatus	ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						TTGACTTGCTCAATACTATCG	0.378													6	32					0	0	0	0
ZNF839	55778	broad.mit.edu	37	14	102805529	102805529	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:102805529G>A	uc001ylo.2	+	7	1898	c.1548G>A	c.(1546-1548)GAG>GAA	p.E516E	ZNF839_uc010awk.1_Silent_p.E632E|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Silent_p.E516E|ZNF839_uc001ylr.2_Silent_p.E441E|ZNF839_uc001yls.2_Silent_p.E131E|ZNF839_uc001ylt.2_Silent_p.E106E	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	516						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						GAGGCCGGGAGAAGCCCAGGC	0.582													6	23					0	0	0	0
TECPR2	9895	broad.mit.edu	37	14	102901519	102901519	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:102901519G>C	uc001ylw.1	+	9	2513	c.2365G>C	c.(2365-2367)GAG>CAG	p.E789Q	TECPR2_uc010awl.2_Missense_Mutation_p.E789Q|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	789							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GCTGGGTGCAGAGGACGCCGG	0.552													19	92					0	0	0	0
CKB	1152	broad.mit.edu	37	14	103986510	103986510	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:103986510C>T	uc001ynf.1	-	7	996	c.916G>A	c.(916-918)GAG>AAG	p.E306K	CKB_uc001yne.1_Missense_Mutation_p.E128K|CKB_uc010awr.1_Missense_Mutation_p.E237K	NM_001823	NP_001814	P12277	KCRB_HUMAN	brain creatine kinase	306	Phosphagen kinase C-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity				0		Melanoma(154;0.155)	Epithelial(46;0.14)		Creatine(DB00148)	GAGAACTTCTCATGCTTGCCC	0.632													8	40					0	0	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104209072	104209072	+	Silent	SNP	C	T	T	rs12891833		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:104209072C>T	uc001yof.1	-	10	1522	c.1239G>A	c.(1237-1239)CCG>CCA	p.P413P	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Silent_p.P280P	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	413					apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				CCTCCACGCTCGGATCCTTCC	0.552													9	69					0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105414035	105414035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:105414035G>A	uc010axc.1	-	7	7873	c.7753C>T	c.(7753-7755)CAG>TAG	p.Q2585*	AHNAK2_uc001ypx.2_Nonsense_Mutation_p.Q2485*	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2585						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACATCTAGCTGGGGGCCCTTG	0.627													67	220					0	0	0	0
BRF1	2972	broad.mit.edu	37	14	105677498	105677498	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr14:105677498C>T	uc001yqp.2	-	17	2320	c.1957G>A	c.(1957-1959)GAG>AAG	p.E653K	BRF1_uc010tyo.1_Missense_Mutation_p.E538K|BRF1_uc010typ.1_Missense_Mutation_p.E560K|BRF1_uc001yqk.2_Missense_Mutation_p.E179K|BRF1_uc001yql.2_Missense_Mutation_p.E449K|BRF1_uc001yqo.2_Missense_Mutation_p.E415K|BRF1_uc010axg.1_Missense_Mutation_p.E626K|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_3'UTR	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	653					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		ACGCAGGGCTCCCCGTCCTCC	0.667													28	99					0	0	0	0
UBE3A	7337	broad.mit.edu	37	15	25620732	25620732	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:25620732C>T	uc001zaq.2	-	3	250	c.250G>A	c.(250-252)GAT>AAT	p.D84N	UBE3A_uc001zar.2_Missense_Mutation_p.D61N|UBE3A_uc001zas.2_Missense_Mutation_p.D81N|UBE3A_uc001zat.2_Missense_Mutation_p.D61N	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	84					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GGATGAGGATCACAGAGTTTT	0.423													12	42					0	0	0	0
FSIP1	161835	broad.mit.edu	37	15	40068622	40068622	+	Missense_Mutation	SNP	G	A	A	rs148913803		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:40068622G>A	uc001zki.2	-	2	322	c.104C>T	c.(103-105)TCA>TTA	p.S35L		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	35										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		TGGTTCTGTTGAGAGCACCTC	0.388													16	68					0	0	0	0
INO80	54617	broad.mit.edu	37	15	41279293	41279293	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:41279293C>G	uc001zni.2	-	31	4041	c.3828G>C	c.(3826-3828)AAG>AAC	p.K1276N	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	1276	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						ACATACGTTTCTTCTCCAACT	0.468													8	22					0	0	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42109197	42109197	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:42109197G>A	uc001zok.3	+	15	1979	c.1693G>A	c.(1693-1695)GAA>AAA	p.E565K	MAPKBP1_uc001zoj.3_Missense_Mutation_p.E559K|MAPKBP1_uc010bcj.2_Missense_Mutation_p.E66K|MAPKBP1_uc010bci.2_Missense_Mutation_p.E559K|MAPKBP1_uc010udb.1_Missense_Mutation_p.E398K|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Missense_Mutation_p.E66K	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	565	WD 9.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		GACGCTGGACGAACACTCATC	0.602													8	110					0	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42144929	42144929	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:42144929G>A	uc001zos.2	-	61	10580	c.10247C>T	c.(10246-10248)TCA>TTA	p.S3416L		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3451	Spectrin 31.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		ATCTGACACTGAGTGCTGGGG	0.587													7	218					0	0	0	0
CAPN3	825	broad.mit.edu	37	15	42678467	42678467	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:42678467G>A	uc001zpn.1	+	3	788	c.482G>A	c.(481-483)GGG>GAG	p.G161E	CAPN3_uc001zpk.1_5'UTR|CAPN3_uc001zpl.1_Missense_Mutation_p.G74E|CAPN3_uc010udf.1_Missense_Mutation_p.G74E|CAPN3_uc010udg.1_Missense_Mutation_p.G74E|CAPN3_uc001zpo.1_Missense_Mutation_p.G161E|CAPN3_uc001zpp.1_Missense_Mutation_p.G161E	NM_000070	NP_000061	P20807	CAN3_HUMAN	calpain 3 isoform a	161	Calpain catalytic.				muscle organ development|proteolysis	cytoplasm	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity|signal transducer activity			central_nervous_system(1)	1		all_cancers(109;1.65e-16)|all_epithelial(112;8.34e-15)|Lung NSC(122;3.56e-09)|all_lung(180;1.68e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;7.36e-07)		AACTACGCAGGGATCTTCCAC	0.547											OREG0023085	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	95					0	0	0	0
AP4E1	23431	broad.mit.edu	37	15	51226870	51226870	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:51226870G>C	uc001zyx.1	+	8	949	c.919G>C	c.(919-921)GAG>CAG	p.E307Q	AP4E1_uc010ufi.1_Missense_Mutation_p.E307Q|AP4E1_uc010ufj.1_RNA|AP4E1_uc010ufk.1_Intron	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	307					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		ACGAAGAGCTGAGTTAAATCA	0.274													6	22					0	0	0	0
MYO5A	4644	broad.mit.edu	37	15	52620057	52620057	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:52620057C>G	uc002aby.2	-	35	4871	c.4627G>C	c.(4627-4629)GTA>CTA	p.V1543L	MYO5A_uc002abx.3_Missense_Mutation_p.V1516L|MYO5A_uc010ugd.1_Missense_Mutation_p.V265L	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	1543	Dilute.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		ACCTTCAATACTTTTTTGATG	0.368													26	102					0	0	0	0
WDR72	256764	broad.mit.edu	37	15	53809925	53809925	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:53809925C>A	uc002acj.2	-	20	3322	c.3280G>T	c.(3280-3282)GCA>TCA	p.A1094S	WDR72_uc010bfh.1_RNA	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1094										lung(1)|skin(1)	2				all cancers(107;0.0511)		CAGACCTTTGCTATCCATGAA	0.383													6	81					2.0095e-06	2.7548e-06	1	0
GCNT3	9245	broad.mit.edu	37	15	59911580	59911580	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:59911580C>G	uc002age.2	+	3	1592	c.1143C>G	c.(1141-1143)CCC>CCG	p.P381P	GCNT3_uc002agd.2_Silent_p.P381P	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	381	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						CTTATGCTCCCTGCTCTGGAA	0.522													37	122					0	0	0	0
MTFMT	123263	broad.mit.edu	37	15	65316055	65316055	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:65316055C>T	uc002aof.3	-	3	523	c.497G>A	c.(496-498)GGA>GAA	p.G166E		NM_139242	NP_640335	Q96DP5	FMT_HUMAN	mitochondrial methionyl-tRNA formyltransferase	166						mitochondrion	methionyl-tRNA formyltransferase activity|methyltransferase activity			ovary(2)	2					Tetrahydrofolic acid(DB00116)	AACTGTGTCTCCGTGAAGCAC	0.398													6	27					0	0	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659879	74659879	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:74659879G>T	uc002axt.2	-	1	203	c.48C>A	c.(46-48)TGC>TGA	p.C16*	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Nonsense_Mutation_p.C16*|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Nonsense_Mutation_p.C16*	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	16				C -> Y (in Ref. 1; AAA52162).	C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GAAAGGTCTGGCAGCCTTTGA	0.652													6	39					3.59834e-05	4.8757e-05	1	0
FANCI	55215	broad.mit.edu	37	15	89802003	89802003	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:89802003C>T	uc010bnp.1	+	3	243	c.153C>T	c.(151-153)TTC>TTT	p.F51F	FANCI_uc002bnm.1_Silent_p.F51F|FANCI_uc002bnn.1_RNA|FANCI_uc002bno.2_Silent_p.F51F	NM_001113378	NP_001106849	Q9NVI1	FANCI_HUMAN	Fanconi anemia, complementation group I isoform	51					cell cycle|DNA repair	nucleoplasm	protein binding			ovary(2)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GAGCCATCTTCAAAGGTAATA	0.398								Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				14	93					0	0	0	0
C15orf42	90381	broad.mit.edu	37	15	90135363	90135363	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:90135363C>G	uc002boe.2	+	5	1497	c.1497C>G	c.(1495-1497)TTC>TTG	p.F499L		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	499					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GGTTTCCTTTCTGTAACATCA	0.443													3	45					0	0	0	0
LRRC28	123355	broad.mit.edu	37	15	99903443	99903443	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:99903443A>T	uc002bva.1	+	9	1159	c.1004A>T	c.(1003-1005)GAG>GTG	p.E335V	LRRC28_uc010urs.1_RNA|LRRC28_uc002bvb.1_Missense_Mutation_p.E181V|LRRC28_uc010urt.1_Missense_Mutation_p.E149V|LRRC28_uc002bvc.1_Intron|LRRC28_uc010uru.1_Missense_Mutation_p.E266V|LRRC28_uc002bvd.1_Intron	NM_144598	NP_653199	Q86X40	LRC28_HUMAN	leucine rich repeat containing 28	335											0	Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00106)			CCCTTGAGAGAGACGCCAATG	0.582													7	71					0	0	0	0
C15orf51	196968	broad.mit.edu	37	15	100332011	100332011	+	RNA	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:100332011C>T	uc010urx.1	-	5		c.2181G>A			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GATGCACTCTCTGAGGCCCCA	0.542													8	36					0	0	0	0
SOLH	6650	broad.mit.edu	37	16	597026	597026	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:597026C>T	uc002chi.2	+	4	551	c.188C>T	c.(187-189)GCC>GTC	p.A63V	SOLH_uc002chh.1_Missense_Mutation_p.A63V	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	63	RanBP2-type 2.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				GGCAAGGAGGCCTGCGAGGTG	0.692													5	25					0	0	0	0
ZNF174	7727	broad.mit.edu	37	16	3452340	3452340	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:3452340G>C	uc002cvc.2	+	1	1151	c.336G>C	c.(334-336)ATG>ATC	p.M112I	ZNF434_uc002cux.3_5'Flank|ZNF434_uc010uwx.1_5'Flank|ZNF434_uc002cuy.3_5'Flank|ZNF434_uc002cuz.2_5'Flank|ZNF434_uc010uwy.1_5'Flank|ZNF434_uc010uxa.1_5'Flank|ZNF174_uc002cva.2_Missense_Mutation_p.M112I|ZNF174_uc002cvb.2_Missense_Mutation_p.M112I	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	112	SCAN box.				negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						GATGTCCAATGAGCAGCAAGG	0.542													19	57					0	0	0	0
PRM2	5620	broad.mit.edu	37	16	11370049	11370049	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:11370049C>T	uc002dau.1	-	1	289	c.179G>A	c.(178-180)CGA>CAA	p.R60Q	C16orf75_uc002daq.1_Intron|PRM3_uc002dat.1_5'Flank|PRM2_uc010bus.1_Missense_Mutation_p.R60Q	NM_002762	NP_002753	P04554	PRM2_HUMAN	protamine 2	60					chromosome condensation|multicellular organismal development	nucleoplasm|nucleosome	DNA binding				0						CAGCCTCCTTCGAGAGCAGTG	0.642													25	76					0	0	0	0
ABCC6	368	broad.mit.edu	37	16	16255391	16255391	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:16255391C>T	uc002den.3	-	25	3574	c.3537G>A	c.(3535-3537)GGG>GGA	p.G1179G	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1179	Helical; Name=16; (By similarity).|ABC transmembrane type-1 2.				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCAGGCCATTCCCCAGGAGCT	0.602													9	54					0	0	0	0
ERN2	10595	broad.mit.edu	37	16	23706160	23706160	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:23706160G>A	uc002dma.3	-	17	2302	c.2133C>T	c.(2131-2133)CTC>CTT	p.L711L	ERN2_uc010bxp.2_Silent_p.L659L	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	663	Protein kinase.|Cytoplasmic (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		GCTTCTTGCAGAGGCCGAAGT	0.647													10	31					0	0	0	0
GTF3C1	2975	broad.mit.edu	37	16	27480793	27480793	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:27480793C>G	uc002dov.1	-	32	4933	c.4893G>C	c.(4891-4893)CGG>CGC	p.R1631R	GTF3C1_uc002dou.2_Silent_p.R1631R	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1631						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CCTCCATGCTCCGGCGCTTGC	0.602													15	53					0	0	0	0
MAZ	4150	broad.mit.edu	37	16	29821426	29821426	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:29821426G>A	uc002dty.2	+	5	1476	c.1308G>A	c.(1306-1308)GCG>GCA	p.A436A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_Silent_p.A413A|MAZ_uc002dtw.2_Intron|MAZ_uc002dtx.2_3'UTR|MAZ_uc010bzg.2_Silent_p.A131A|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_3'UTR|MAZ_uc010vdy.1_Silent_p.A37A|uc002duc.1_RNA|PRRT2_uc002dud.2_5'Flank|PRRT2_uc002due.3_5'Flank|PRRT2_uc002duf.1_5'Flank	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	436	Poly-Ala.				regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						CAATggcggcggcagcggcag	0.463													15	41					0	0	0	0
MAZ	4150	broad.mit.edu	37	16	29821429	29821429	+	Silent	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:29821429A>G	uc002dty.2	+	5	1479	c.1311A>G	c.(1309-1311)GCA>GCG	p.A437A	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_Silent_p.A414A|MAZ_uc002dtw.2_Intron|MAZ_uc002dtx.2_3'UTR|MAZ_uc010bzg.2_Silent_p.A132A|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_3'UTR|MAZ_uc010vdy.1_Silent_p.A38A|uc002duc.1_RNA|PRRT2_uc002dud.2_5'Flank|PRRT2_uc002due.3_5'Flank|PRRT2_uc002duf.1_5'Flank	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	437	Poly-Ala.				regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						Tggcggcggcagcggcagcgg	0.468													13	40					0	0	0	0
ZNF629	23361	broad.mit.edu	37	16	30794731	30794731	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:30794731G>A	uc002dzs.1	-	3	1126	c.918C>T	c.(916-918)CTC>CTT	p.L306L		NM_001080417	NP_001073886	Q9UEG4	ZN629_HUMAN	zinc finger protein 629	306	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			TCTGGTGCTTGAGGAGGTTGT	0.642													18	95					0	0	0	0
CNOT1	23019	broad.mit.edu	37	16	58577583	58577583	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:58577583C>A	uc002env.2	-	31	4655	c.4362G>T	c.(4360-4362)ATG>ATT	p.M1454I	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.M1449I|CNOT1_uc002enx.2_Missense_Mutation_p.M1454I|CNOT1_uc010vik.1_Missense_Mutation_p.M411I	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1454					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TGCATGTAATCATAGCCATTC	0.438													11	27					6.40141e-05	8.65376e-05	1	0
CDH3	1001	broad.mit.edu	37	16	68712542	68712542	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:68712542G>T	uc002ewf.2	+	5	1661	c.529G>T	c.(529-531)GAG>TAG	p.E177*	CDH3_uc010vli.1_Nonsense_Mutation_p.E122*	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	177	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		GGACCGGGAGGAGATTGCCAA	0.582													17	83					2.48551e-13	3.52314e-13	1	0
TMCO7	79613	broad.mit.edu	37	16	68877575	68877575	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:68877575C>T	uc002ewi.3	+	1	67	c.55C>T	c.(55-57)CGG>TGG	p.R19W	TMCO7_uc002ewh.2_Missense_Mutation_p.R19W	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	19						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		CGGTCTGGATCGGATTTTGGA	0.697													15	131					0	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88665043	88665043	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:88665043G>A	uc002fky.2	+	5	1053	c.853G>A	c.(853-855)GAT>AAT	p.D285N	ZC3H18_uc010voy.1_Missense_Mutation_p.D168N|ZC3H18_uc010voz.1_Missense_Mutation_p.D309N	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	285	Pro-rich.					nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GCCGGTAGTTGATGAAATTTT	0.468													5	13					0	0	0	0
VPS53	55275	broad.mit.edu	37	17	530477	530477	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:530477C>T	uc002frn.2	-	10	1058	c.911G>A	c.(910-912)CGC>CAC	p.R304H	VPS53_uc002frk.2_5'UTR|VPS53_uc010cjo.1_Missense_Mutation_p.R304H|VPS53_uc002frl.2_RNA|VPS53_uc002frm.2_Missense_Mutation_p.R275H|VPS53_uc002fro.2_Missense_Mutation_p.R106H|VPS53_uc010cjp.1_Intron	NM_018289	NP_060759	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 isoform 2	304					protein transport	endosome membrane|Golgi apparatus					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		TGGAAACATGCGGCCGTATTT	0.498													20	53					0	0	0	0
SLC25A11	8402	broad.mit.edu	37	17	4843164	4843164	+	Silent	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:4843164C>A	uc002fzo.1	-	1	155	c.42G>T	c.(40-42)GGG>GGT	p.G14G	SLC25A11_uc002fzp.1_5'UTR|RNF167_uc002fzq.2_5'Flank|RNF167_uc002fzr.2_5'Flank|RNF167_uc002fzs.2_5'Flank|RNF167_uc002fzt.2_5'Flank|RNF167_uc002fzu.2_5'Flank|RNF167_uc002fzv.2_5'Flank|RNF167_uc002fzw.1_5'Flank|RNF167_uc002fzx.2_5'Flank	NM_003562	NP_003553	Q02978	M2OM_HUMAN	solute carrier family 25 member 11 isoform 1	14					gluconeogenesis	integral to plasma membrane|mitochondrial inner membrane	oxoglutarate:malate antiporter activity				0						TACGGGGCTTCCCGTCTATCC	0.706													4	25					1.23904e-05	1.68671e-05	1	0
C17orf74	201243	broad.mit.edu	37	17	7330298	7330298	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:7330298C>T	uc002ggw.2	+	3	1061	c.988C>T	c.(988-990)CGG>TGG	p.R330W	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	330						integral to membrane					0		Prostate(122;0.157)				CTCGGTGTCCCGGAACGCCCG	0.692													16	37					0	0	0	0
DNAH9	1770	broad.mit.edu	37	17	11584154	11584154	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:11584154G>C	uc002gne.2	+	19	3759	c.3691G>C	c.(3691-3693)GAT>CAT	p.D1231H	DNAH9_uc010coo.2_Missense_Mutation_p.D525H	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1231	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CACAGCCTTCGATGCAGAACA	0.522													9	24					0	0	0	0
RASD1	51655	broad.mit.edu	37	17	17399349	17399349	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:17399349G>A	uc002gri.2	-	1	359	c.147C>T	c.(145-147)TTC>TTT	p.F49F		NM_016084	NP_057168	Q9Y272	RASD1_HUMAN	RAS, dexamethasone-induced 1 precursor	49					G-protein coupled receptor protein signaling pathway|small GTPase mediated signal transduction	nucleus|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity				0						AGGCGTCCTCGAAGCGGCCGG	0.622													16	52					0	0	0	0
CCDC144B	284047	broad.mit.edu	37	17	18525853	18525853	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:18525853T>C	uc002gub.1	-	2	459	c.374A>G	c.(373-375)GAA>GGA	p.E125G	CCDC144B_uc002gua.3_RNA|CCDC144B_uc010vyc.1_RNA|CCDC144B_uc002guc.1_Missense_Mutation_p.E125G	NM_182568	NP_872374			coiled-coil domain containing 144B											ovary(1)|skin(1)	2						TGTCTGTTTTTCCTTATATTC	0.274													15	19					0	0	0	0
FAM83G	644815	broad.mit.edu	37	17	18881970	18881970	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:18881970C>T	uc002guw.2	-	5	1176	c.1009G>A	c.(1009-1011)GCG>ACG	p.A337T	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	337										ovary(1)|central_nervous_system(1)	2						ACAGTGCCCGCGGGCACCAGG	0.597													40	148					0	0	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904125	21904125	+	RNA	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:21904125G>A	uc002gza.2	+	1		c.64G>A				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ggagtcgcaaggggccgagca	0													7	58					0	0	0	0
SARM1	23098	broad.mit.edu	37	17	26711532	26711532	+	Missense_Mutation	SNP	G	A	A	rs147156050	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:26711532G>A	uc010crl.1	+	6	1313	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_5'Flank	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	416	SAM 1.				innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GAAGGAGGCCGAGGTTCAGAC	0.677													7	30					0	0	0	0
SARM1	23098	broad.mit.edu	37	17	26711577	26711577	+	Missense_Mutation	SNP	G	A	A	rs137938585	by1000genomes	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:26711577G>A	uc010crl.1	+	6	1358	c.1291G>A	c.(1291-1293)GAG>AAG	p.E431K	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_5'Flank	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	431	SAM 1.				innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CAAGTACTGCGAGAGCTTCCG	0.682													6	18					0	0	0	0
LRRC37B	114659	broad.mit.edu	37	17	30349151	30349151	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:30349151C>G	uc002hgu.2	+	1	997	c.986C>G	c.(985-987)CCA>CGA	p.P329R	LRRC37B_uc010wbx.1_Missense_Mutation_p.P247R|LRRC37B_uc010csu.2_Missense_Mutation_p.P329R	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	329	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				GTTCAACCTCCAGGTGAGGAT	0.473													34	132					0	0	0	0
SLFN12	55106	broad.mit.edu	37	17	33738501	33738501	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:33738501C>T	uc002hji.3	-	4	1970	c.1593G>A	c.(1591-1593)CTG>CTA	p.L531L	SLFN12_uc002hjj.3_Silent_p.L531L|SLFN12_uc010cts.2_Silent_p.L531L	NM_018042	NP_060512	Q8IYM2	SLN12_HUMAN	schlafen family member 12	531							ATP binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AAAGGGCTTTCAGCAAGTATT	0.388													15	60					0	0	0	0
GSDMB	55876	broad.mit.edu	37	17	38066128	38066128	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:38066128C>G	uc010cwj.2	-	3	462	c.457G>C	c.(457-459)GAA>CAA	p.E153Q	GSDMB_uc010cwi.2_5'Flank|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_Intron|GSDMB_uc002htg.2_Missense_Mutation_p.E153Q|GSDMB_uc002hth.2_Missense_Mutation_p.E153Q|GSDMB_uc010wem.1_Missense_Mutation_p.E153Q	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	153						cytoplasm				breast(1)|pancreas(1)	2						TACAGGTTTTCTCTCGTATTA	0.473													20	60					0	0	0	0
DGKE	8526	broad.mit.edu	37	17	54912414	54912414	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:54912414C>G	uc002iur.2	+	2	438	c.258C>G	c.(256-258)TTC>TTG	p.F86L	DGKE_uc002ius.1_Missense_Mutation_p.F86L|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	86	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					AGGGCGCCTTCTGCGACTGCT	0.627													11	43					0	0	0	0
SCPEP1	59342	broad.mit.edu	37	17	55075841	55075841	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:55075841G>T	uc002iuv.3	+	10	1029	c.976G>T	c.(976-978)GAG>TAG	p.E326*	SCPEP1_uc010dcl.2_RNA|SCPEP1_uc010wnk.1_Nonsense_Mutation_p.E276*	NM_021626	NP_067639	Q9HB40	RISC_HUMAN	serine carboxypeptidase 1 precursor	326					proteolysis	extracellular region	serine-type carboxypeptidase activity			skin(1)	1	Breast(9;2.86e-08)					AATTATTCCTGAGGATCAATC	0.438													23	59					5.35356e-11	7.51557e-11	1	0
EPX	8288	broad.mit.edu	37	17	56276417	56276417	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:56276417G>A	uc002ivq.2	+	8	1223	c.1137G>A	c.(1135-1137)ACG>ACA	p.T379T		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	379					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCCGATCAACGGAAACCCCCA	0.567													8	20					0	0	0	0
BZRAP1	9256	broad.mit.edu	37	17	56403660	56403660	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:56403660C>T	uc002ivx.3	-	3	1435	c.564G>A	c.(562-564)CTG>CTA	p.L188L	BZRAP1_uc010dcs.2_Silent_p.L188L|BZRAP1_uc010wnt.1_Silent_p.L188L|uc010dct.1_5'Flank|uc010dcu.1_5'Flank	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	188						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCACCACCCTCAGGTTCGTTT	0.637													23	48					0	0	0	0
BRIP1	83990	broad.mit.edu	37	17	59885908	59885908	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:59885908C>T	uc002izk.1	-	7	979	c.838G>A	c.(838-840)GAT>AAT	p.D280N		NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	280	Helicase ATP-binding.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CAAGTATGATCCCTGCTGGAA	0.438			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				16	64					0	0	0	0
FDXR	2232	broad.mit.edu	37	17	72860147	72860147	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:72860147C>G	uc002jly.2	-	10	1132	c.1045G>C	c.(1045-1047)GAA>CAA	p.E349Q	FDXR_uc010wri.1_Missense_Mutation_p.E297Q|FDXR_uc010wrj.1_Missense_Mutation_p.E347Q|FDXR_uc002jlw.2_Missense_Mutation_p.E106Q|FDXR_uc002jlx.2_Missense_Mutation_p.E355Q|FDXR_uc002jmc.2_Missense_Mutation_p.E321Q|FDXR_uc010wrk.1_Missense_Mutation_p.E380Q|FDXR_uc010wrl.1_Missense_Mutation_p.E392Q|FDXR_uc002jma.2_Missense_Mutation_p.E350Q|FDXR_uc010wrm.1_Missense_Mutation_p.E309Q|FDXR_uc002jlz.2_Missense_Mutation_p.E341Q|FDXR_uc002jmb.2_Intron	NM_024417	NP_077728	P22570	ADRO_HUMAN	ferredoxin reductase isoform 1 precursor	349					cholesterol metabolic process|electron transport chain|steroid biosynthetic process|transport	mitochondrial matrix	ferredoxin-NADP+ reductase activity|protein binding				0	all_lung(278;0.172)|Lung NSC(278;0.207)					GGGAGGTCTTCCATGTCTCCC	0.632													8	75					0	0	0	0
ZACN	353174	broad.mit.edu	37	17	74077661	74077661	+	Silent	SNP	C	T	T	rs143332874		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:74077661C>T	uc002jqn.2	+	7	788	c.705C>T	c.(703-705)ATC>ATT	p.I235I	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_Intron|EXOC7_uc002jqp.1_3'UTR|EXOC7_uc010dgv.1_3'UTR|EXOC7_uc002jqs.2_3'UTR|EXOC7_uc002jqq.2_3'UTR|EXOC7_uc010wsw.1_3'UTR|EXOC7_uc010wsx.1_3'UTR|EXOC7_uc002jqr.2_3'UTR|EXOC7_uc010wsv.1_3'UTR	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	235	Leu-rich.|Helical; Name=1; (Potential).				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						AGTCCATCATCGCTCTCTTGG	0.642													31	98					0	0	0	0
ZNF521	25925	broad.mit.edu	37	18	22805237	22805237	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:22805237G>C	uc002kvk.2	-	4	2892	c.2645C>G	c.(2644-2646)TCT>TGT	p.S882C	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.S882C|ZNF521_uc002kvl.2_Missense_Mutation_p.S662C	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	882					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					CATAGGCTCAGAGGTGTCAAC	0.532			T	PAX5	ALL								18	69					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31320039	31320039	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:31320039G>A	uc010dmg.1	+	11	2726	c.2671G>A	c.(2671-2673)GAT>AAT	p.D891N	ASXL3_uc002kxq.2_Missense_Mutation_p.D598N	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	891					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TGAAGGGACAGATAATAAGGG	0.348													9	53					0	0	0	0
ZNF396	252884	broad.mit.edu	37	18	32954025	32954025	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:32954025G>A	uc010xcf.1	-	2	364	c.232C>T	c.(232-234)CAT>TAT	p.H78Y		NM_145756	NP_665699	Q96N95	ZN396_HUMAN	zinc finger protein 396	78	SCAN box.				viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGCCAGAGATGACAAAGTTCC	0.597													13	74					0	0	0	0
SETBP1	26040	broad.mit.edu	37	18	42531993	42531993	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:42531993C>T	uc010dni.2	+	4	2984	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	896						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CTTTTGATTTCTGCTCCCTGG	0.557									Schinzel-Giedion_syndrome				12	24					0	0	0	0
NETO1	81832	broad.mit.edu	37	18	70526106	70526106	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:70526106C>G	uc002lkw.2	-	4	708	c.424G>C	c.(424-426)GAG>CAG	p.E142Q	NETO1_uc002lkx.1_Missense_Mutation_p.E141Q|NETO1_uc002lky.1_Missense_Mutation_p.E142Q|NETO1_uc002lkz.2_Missense_Mutation_p.E141Q	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	142	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		GATTCCAGCTCTCCATCAGCA	0.338													14	37					0	0	0	0
BSG	682	broad.mit.edu	37	19	579570	579570	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:579570C>T	uc002loz.2	+	3	584	c.486C>T	c.(484-486)AGC>AGT	p.S162S	BSG_uc002loy.2_Intron|BSG_uc002lpa.2_Silent_p.S46S|BSG_uc002lpb.2_RNA|BSG_uc010drr.2_Silent_p.S46S|BSG_uc002lpc.2_Silent_p.S209S|BSG_uc002lpd.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor	162	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAATGACAGCGCCACAGAGG	0.627													16	45					0	0	0	0
HCN2	610	broad.mit.edu	37	19	603773	603773	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:603773C>T	uc002lpe.2	+	2	915	c.862C>T	c.(862-864)CGC>TGC	p.R288C		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	288	Cytoplasmic (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAAGTATCTGCGCACGTGGTT	0.547													7	66					0	0	0	0
ATP8B3	148229	broad.mit.edu	37	19	1800407	1800407	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:1800407G>A	uc002ltw.2	-	13	1428	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	ATP8B3_uc002ltv.2_Silent_p.F351F|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_Silent_p.F146F|ATP8B3_uc002ltz.1_Silent_p.F345F	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	398	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AACCGAAGCCGAAGGCCAACA	0.597													22	78					0	0	0	0
SEMA6B	10501	broad.mit.edu	37	19	4554425	4554425	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:4554425G>A	uc010duc.1	-	8	784	c.746C>T	c.(745-747)GCG>GTG	p.A249V	SEMA6B_uc010dud.2_Missense_Mutation_p.A249V|SEMA6B_uc010xih.1_Missense_Mutation_p.A249V	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	249	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		AAACTCCATCGCAATCTCCCG	0.567													7	48					0	0	0	0
GTF2F1	2962	broad.mit.edu	37	19	6389547	6389547	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:6389547C>A	uc002meq.2	-	4	519	c.234G>T	c.(232-234)GAG>GAT	p.E78D	GTF2F1_uc010xjb.1_5'Flank|GTF2F1_uc010xjc.1_Missense_Mutation_p.E50D	NM_002096	NP_002087	P35269	T2FA_HUMAN	general transcription factor IIF, polypeptide 1,	78					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|response to virus|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cell junction|transcription factor TFIIF complex	catalytic activity|DNA binding|phosphatase activator activity|transcription coactivator activity|transcription factor binding				0						TCCTCCGAGCCTCCTCCCGAA	0.607													35	166					2.42023e-17	3.46425e-17	1	0
EVI5L	115704	broad.mit.edu	37	19	7912766	7912766	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:7912766G>A	uc002min.2	+	3	440	c.286G>A	c.(286-288)GAG>AAG	p.E96K	EVI5L_uc010xjz.1_Missense_Mutation_p.E96K	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	96						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						GATCGCCAACGAGTGGGAGGA	0.697													4	7					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9067629	9067629	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:9067629G>C	uc002mkp.2	-	3	20021	c.19817C>G	c.(19816-19818)TCT>TGT	p.S6606C		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6608	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGACGAATAAGATTCCTTTTC	0.433													6	192					0	0	0	0
OR7G3	390883	broad.mit.edu	37	19	9237045	9237045	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:9237045G>A	uc010xkl.1	-	1	582	c.582C>T	c.(580-582)ATC>ATT	p.I194I		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGATGTTATTGATGAGGACAT	0.443													23	67					0	0	0	0
Unknown	0	broad.mit.edu	37	19	15880747	15880747	+	RNA	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:15880747C>G	uc002nbo.2	-	7		c.1145G>C								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GTGTCAGCCTCTGCTCTTACA	0.522													4	30					0	0	0	0
AP1M1	8907	broad.mit.edu	37	19	16314374	16314374	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:16314374C>T	uc002ndu.2	+	2	320	c.147C>T	c.(145-147)ATC>ATT	p.I49I	AP1M1_uc002ndv.2_Silent_p.I49I|AP1M1_uc010xpd.1_Silent_p.I49I	NM_032493	NP_115882	Q9BXS5	AP1M1_HUMAN	adaptor-related protein complex 1, mu 1 subunit	49					cellular membrane organization|endosome to melanosome transport|interspecies interaction between organisms|intracellular protein transport|melanosome organization|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding			ovary(3)|breast(1)	4						TGTCGCCCATCCTGGCCCACG	0.592													20	44					0	0	0	0
ZNF253	56242	broad.mit.edu	37	19	20002713	20002713	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:20002713G>A	uc002noj.2	+	4	749	c.657G>A	c.(655-657)AAG>AAA	p.K219K	ZNF253_uc002nok.2_Silent_p.K143K|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	219	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CTACACATAAGAGAATTCATA	0.383													12	47					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	30934667	30934667	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:30934667G>A	uc002nsu.1	+	2	336	c.198G>A	c.(196-198)GAG>GAA	p.E66E	ZNF536_uc010edd.1_Silent_p.E66E	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	66					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCCTGGAGGAGAAGGCCCACG	0.687													14	48					0	0	0	0
ZNF540	163255	broad.mit.edu	37	19	38102931	38102931	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:38102931G>C	uc002ogq.2	+	5	1082	c.750G>C	c.(748-750)AAG>AAC	p.K250N	ZNF540_uc002ogu.2_Missense_Mutation_p.K250N|ZNF540_uc010efq.2_Missense_Mutation_p.K218N	NM_152606	NP_689819	Q8NDQ6	ZN540_HUMAN	zinc finger protein 540	250	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AATGTGGGAAGACCTTTACTC	0.353													7	34					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40376432	40376432	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:40376432G>C	uc002omp.3	-	25	11880	c.11872C>G	c.(11872-11874)CTG>GTG	p.L3958V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3958	TIL 9.|Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGGCACTGCAGAGGGGCACTG	0.632													5	29					0	0	0	0
HIPK4	147746	broad.mit.edu	37	19	40889957	40889957	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:40889957C>G	uc002onp.2	-	2	840	c.555G>C	c.(553-555)GAG>GAC	p.E185D		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	185	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			CCAGCAGGATCTCAGGGGCCC	0.632													16	57					0	0	0	0
PRX	57716	broad.mit.edu	37	19	40900746	40900746	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:40900746C>G	uc002onr.2	-	7	3782	c.3513G>C	c.(3511-3513)CAG>CAC	p.Q1171H	PRX_uc002onq.2_Missense_Mutation_p.Q1032H|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	1171	Glu-rich (acidic).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGACTGTACTCTGAGCCTGCT	0.662													4	132					0	0	0	0
ATP1A3	478	broad.mit.edu	37	19	42482830	42482830	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:42482830G>A	uc002osg.2	-	12	1712	c.1558C>T	c.(1558-1560)CTG>TTG	p.L520L	ATP1A3_uc010xwf.1_Silent_p.L531L|ATP1A3_uc010xwg.1_Silent_p.L490L|ATP1A3_uc010xwh.1_Silent_p.L533L|ATP1A3_uc002osh.2_Silent_p.L520L	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	520	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TCCTCGTCCAGAGGCTGCTCC	0.657													19	89					0	0	0	0
ZNF284	342909	broad.mit.edu	37	19	44590114	44590114	+	Silent	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:44590114C>A	uc002oyg.1	+	5	699	c.483C>A	c.(481-483)ATC>ATA	p.I161I	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	161	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				ATGTCTCCATCCTTGATCTTC	0.408													8	23					0.000157383	0.000212268	1	0
PVRL2	5819	broad.mit.edu	37	19	45391518	45391518	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:45391518A>G	uc002ozw.1	+	9	1889	c.1499A>G	c.(1498-1500)GAG>GGG	p.E500G	TOMM40_uc002ozx.3_5'Flank|TOMM40_uc002ozy.3_5'Flank|TOMM40_uc002paa.3_5'Flank|TOMM40_uc002ozz.2_5'Flank	NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	500	Cytoplasmic (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		gaggagggggaggaggaggaa	0.483													10	49					0	0	0	0
SLC1A5	6510	broad.mit.edu	37	19	47290911	47290911	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:47290911G>C	uc002pfs.2	-	1	932	c.312C>G	c.(310-312)ATC>ATG	p.I104M	SLC1A5_uc010xyh.1_5'Flank|SLC1A5_uc002pfq.2_5'Flank|SLC1A5_uc002pfr.2_5'Flank	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	104	Helical; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	CCAGCGGCAAGATGATCATCC	0.721													4	13					0	0	0	0
CYTH2	9266	broad.mit.edu	37	19	48981790	48981790	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:48981790G>T	uc002pjj.3	+	12	1356	c.1056G>T	c.(1054-1056)ATG>ATT	p.M352I	CYTH2_uc002pji.2_RNA	NM_017457	NP_059431	Q99418	CYH2_HUMAN	cytohesin 2 isoform 1	352	PH.				actin cytoskeleton organization|endocytosis|regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|membrane fraction|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						GAAACCACATGGTGTACCGGA	0.458													9	60					0.000274275	0.000369071	1	0
CPT1C	126129	broad.mit.edu	37	19	50208329	50208329	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:50208329C>T	uc002ppj.2	+	8	1042	c.837C>T	c.(835-837)CTC>CTT	p.L279L	CPT1C_uc002ppl.3_Silent_p.L245L|CPT1C_uc002ppi.2_Silent_p.L196L|CPT1C_uc002ppk.2_Silent_p.L268L|CPT1C_uc010eng.2_Silent_p.L279L|CPT1C_uc010enh.2_Silent_p.L279L|CPT1C_uc010ybc.1_Silent_p.L117L|CPT1C_uc010eni.1_5'Flank	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	279	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		TCCATGCCCTCCTCCTGTACC	0.652													21	66					0	0	0	0
ZNF473	25888	broad.mit.edu	37	19	50549839	50549839	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:50549839G>C	uc002prn.2	+	5	2376	c.2139G>C	c.(2137-2139)CAG>CAC	p.Q713H	ZNF473_uc002prm.2_Missense_Mutation_p.Q713H|ZNF473_uc010ybo.1_Missense_Mutation_p.Q701H	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	713	C2H2-type 15.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CGTTCCGTCAGAGCTCATGCC	0.502											OREG0025632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	82					0	0	0	0
MYBPC2	4606	broad.mit.edu	37	19	50951529	50951529	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:50951529G>A	uc002psf.2	+	13	1405	c.1354G>A	c.(1354-1356)GCC>ACC	p.A452T		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	452	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GACGGTGAAGGCCTCAGAACA	0.507													5	53					0	0	0	0
ZNF175	7728	broad.mit.edu	37	19	52090088	52090088	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:52090088C>A	uc002pxb.2	+	5	882	c.504C>A	c.(502-504)AAC>AAA	p.N168K		NM_007147	NP_009078	Q9Y473	ZN175_HUMAN	zinc finger protein 175	168					response to virus	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000426)|OV - Ovarian serous cystadenocarcinoma(262;0.0257)		AAACATTGAACACAGAAAGCA	0.413													18	49					3.32936e-07	4.58572e-07	1	0
NLRP12	91662	broad.mit.edu	37	19	54308652	54308652	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:54308652G>C	uc002qch.3	-	5	2516	c.2296C>G	c.(2296-2298)CTC>GTC	p.L766V	NLRP12_uc010eqw.2_Missense_Mutation_p.L49V|NLRP12_uc002qci.3_Missense_Mutation_p.L766V|NLRP12_uc002qcj.3_Missense_Mutation_p.L767V|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.L767V	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	766					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TTGGCTATGAGAGCTGCAGAG	0.557													13	105					0	0	0	0
CACNG6	59285	broad.mit.edu	37	19	54496185	54496185	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:54496185G>A	uc002qct.2	+	1	644	c.54G>A	c.(52-54)GCG>GCA	p.A18A	CACNG6_uc002qcu.2_Silent_p.A18A|CACNG6_uc002qcv.2_Silent_p.A18A	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	18						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		ggggggccgcgggccggcggc	0.567													4	18					0	0	0	0
EPS8L1	54869	broad.mit.edu	37	19	55593493	55593493	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:55593493C>T	uc002qis.3	+	10	1039	c.935C>T	c.(934-936)TCG>TTG	p.S312L	EPS8L1_uc010ess.1_Missense_Mutation_p.S294L|EPS8L1_uc010est.1_Missense_Mutation_p.S312L|EPS8L1_uc010yfr.1_Missense_Mutation_p.S248L|EPS8L1_uc010esu.1_RNA|EPS8L1_uc002qiu.2_Missense_Mutation_p.S185L|EPS8L1_uc002qiv.2_5'UTR|EPS8L1_uc002qiw.2_Missense_Mutation_p.S59L	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	312						cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		AAGCCGCCCTCGGAGGCCGAG	0.582													7	6					0	0	0	0
ZNF543	125919	broad.mit.edu	37	19	57840200	57840200	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:57840200G>C	uc002qoi.1	+	4	1715	c.1370G>C	c.(1369-1371)GGA>GCA	p.G457A		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		AAAGAATGTGGAAAAGCCTTT	0.488													15	52					0	0	0	0
ZNF446	55663	broad.mit.edu	37	19	58991811	58991811	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:58991811G>A	uc002qsz.2	+	7	1188	c.1071G>A	c.(1069-1071)GGG>GGA	p.G357G	ZNF446_uc002qta.2_Missense_Mutation_p.G329D|ZNF446_uc010eur.2_3'UTR|SLC27A5_uc002qtb.2_RNA	NM_017908	NP_060378	Q9NWS9	ZN446_HUMAN	zinc finger protein 446	357	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		ACACGAGTGGGCCAGGTGTGC	0.662													11	40					0	0	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10917766	10917766	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:10917766T>C	uc002ras.2	+	11	990	c.881T>C	c.(880-882)GTT>GCT	p.V294A	ATP6V1C2_uc002rat.2_Intron	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	294					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		GACCACAAGGTTAAGGTAACC	0.512													17	55					0	0	0	0
APOB	338	broad.mit.edu	37	2	21231537	21231537	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:21231537C>G	uc002red.2	-	26	8331	c.8203G>C	c.(8203-8205)GAC>CAC	p.D2735H		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2735				Missing (in Ref. 15; AAA51758).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGTGAAGGTCAGGAACTTGA	0.418													22	116					0	0	0	0
THUMPD2	80745	broad.mit.edu	37	2	39997221	39997221	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:39997221C>T	uc002rru.2	-	3	338	c.301G>A	c.(301-303)GAT>AAT	p.D101N	THUMPD2_uc002rrv.2_RNA|THUMPD2_uc010ynt.1_Missense_Mutation_p.D8N|THUMPD2_uc010ynu.1_Missense_Mutation_p.D101N	NM_025264	NP_079540	Q9BTF0	THUM2_HUMAN	THUMP domain containing 2	101							methyltransferase activity			skin(1)	1		all_hematologic(82;0.248)				CTTCCTGGATCTTCATTTATA	0.289													5	36					0	0	0	0
THUMPD2	80745	broad.mit.edu	37	2	39997224	39997224	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:39997224C>T	uc002rru.2	-	3	335	c.298G>A	c.(298-300)GAA>AAA	p.E100K	THUMPD2_uc002rrv.2_RNA|THUMPD2_uc010ynt.1_Missense_Mutation_p.E7K|THUMPD2_uc010ynu.1_Missense_Mutation_p.E100K	NM_025264	NP_079540	Q9BTF0	THUM2_HUMAN	THUMP domain containing 2	100							methyltransferase activity			skin(1)	1		all_hematologic(82;0.248)				CCTGGATCTTCATTTATAAGT	0.299													5	35					0	0	0	0
ZFP36L2	678	broad.mit.edu	37	2	43451806	43451806	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:43451806C>T	uc002rsv.3	-	2	1428	c.1137G>A	c.(1135-1137)CAG>CAA	p.Q379Q	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	379					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				AGTTGTGGGTCTGGATGGCGA	0.393													6	14					0	0	0	0
SOCS5	9655	broad.mit.edu	37	2	46986960	46986960	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:46986960G>C	uc002rvf.2	+	2	1455	c.1291G>C	c.(1291-1293)GAG>CAG	p.E431Q	SOCS5_uc010yoe.1_Missense_Mutation_p.E400Q|SOCS5_uc002rvg.2_Missense_Mutation_p.E431Q	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	431	SH2.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TGCCCGAATTGAGCAGTGGAA	0.493													32	87					0	0	0	0
KLRAQ1	129285	broad.mit.edu	37	2	48687279	48687279	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:48687279C>T	uc002rwm.2	+	6	771	c.586C>T	c.(586-588)CGA>TGA	p.R196*	KLRAQ1_uc002rwi.1_Nonsense_Mutation_p.R196*|KLRAQ1_uc002rwj.2_Nonsense_Mutation_p.R196*|KLRAQ1_uc002rwl.2_Nonsense_Mutation_p.R150*|KLRAQ1_uc002rwk.2_Nonsense_Mutation_p.R196*|KLRAQ1_uc010yok.1_Nonsense_Mutation_p.R196*	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1	196	Potential.									ovary(1)	1						ATGTCGACTTCGAACGGAAGA	0.403													11	21					0	0	0	0
NRXN1	9378	broad.mit.edu	37	2	50765639	50765639	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:50765639C>A	uc010fbq.2	-	10	3492	c.2015G>T	c.(2014-2016)TGG>TTG	p.W672L	NRXN1_uc002rxb.3_Missense_Mutation_p.W304L|NRXN1_uc002rxe.3_Missense_Mutation_p.W632L|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CAGAGCAGTCCACACCTCGGT	0.517													15	186					1.05317e-09	1.4679e-09	1	0
SMEK2	57223	broad.mit.edu	37	2	55792169	55792169	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:55792169G>C	uc002rzc.2	-	14	2319	c.1944C>G	c.(1942-1944)ATC>ATG	p.I648M	SMEK2_uc002rzb.2_Missense_Mutation_p.I563M|SMEK2_uc002rzd.2_Missense_Mutation_p.I616M|SMEK2_uc002ryz.2_Missense_Mutation_p.I82M|SMEK2_uc002rza.2_Missense_Mutation_p.I439M	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	648						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TAAGAGACTTGATATCTTCCT	0.279													2	9					0	0	0	0
SMEK2	57223	broad.mit.edu	37	2	55806911	55806911	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:55806911C>T	uc002rzc.2	-	9	1747	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	SMEK2_uc002rzb.2_Missense_Mutation_p.E458K|SMEK2_uc002rzd.2_Missense_Mutation_p.E458K|SMEK2_uc002rza.2_Missense_Mutation_p.E334K	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	458						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TCACTTTTTTCGGTTTTCTGA	0.308													10	25					0	0	0	0
APLF	200558	broad.mit.edu	37	2	68805097	68805097	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:68805097G>C	uc002sep.2	+	10	1652	c.1479G>C	c.(1477-1479)GAG>GAC	p.E493D	APLF_uc002seq.1_RNA|APLF_uc002ser.1_Missense_Mutation_p.E224D	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	493	Potential.				double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						AAGATGAAGAGAAGGAAGATG	0.373													9	36					0	0	0	0
ANKRD53	79998	broad.mit.edu	37	2	71211740	71211740	+	Splice_Site	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:71211740G>C	uc002shl.3	+	6	1105	c.904_splice	c.e6-1	p.K302_splice	ANKRD53_uc002shk.3_Splice_Site_p.*344_splice|ANKRD53_uc002shm.3_Splice_Site_p.*255_splice	NM_001115116	NP_001108588	Q8N9V6	ANR53_HUMAN	ankyrin repeat domain 53 isoform a												0						TGTTGTTGCAGAAAGAGCACA	0.547											OREG0014687	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	99					0	0	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71360440	71360440	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:71360440G>A	uc002sht.1	+	2	854	c.502G>A	c.(502-504)GAT>AAT	p.D168N	MPHOSPH10_uc010feb.1_Missense_Mutation_p.D168N	NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	168					RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						CGTTTTCAGTGATGAGGATTC	0.443													7	70					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90139477	90139477	+	RNA	SNP	G	A	A	rs2848291	by1000genomes	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:90139477G>A	uc010fhm.2	+	18		c.2270G>A								Parts of antibodies, mostly variable regions.																		GTCCCATCAAGGTTCAGCGGC	0.483													5	173					0	0	0	0
AFF3	3899	broad.mit.edu	37	2	100625344	100625344	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:100625344C>T	uc002tag.2	-	4	340	c.104G>A	c.(103-105)AGA>AAA	p.R35K	AFF3_uc002taf.2_Missense_Mutation_p.R60K|AFF3_uc010fiq.1_Missense_Mutation_p.R35K|AFF3_uc010yvr.1_Missense_Mutation_p.R189K|AFF3_uc002tah.1_Missense_Mutation_p.R60K|AFF3_uc010fir.1_Missense_Mutation_p.R112K|AFF3_uc002tai.2_5'Flank	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	35					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TTCTTGATTTCTTCTTTCTCG	0.393													4	22					0	0	0	0
POTEF	728378	broad.mit.edu	37	2	130877784	130877784	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:130877784C>T	uc010fmh.2	-	3	705	c.305G>A	c.(304-306)TGC>TAC	p.C102Y		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	102						cell cortex	ATP binding			skin(3)|ovary(2)	5						GCAGTGGCAGCACCACTTGCC	0.607													36	258					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	142004806	142004806	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:142004806T>C	uc002tvj.1	-	5	1553	c.581A>G	c.(580-582)AAG>AGG	p.K194R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	194	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATTTTAGCCTTGCAAGATCT	0.383										TSP Lung(27;0.18)			7	50					0	0	0	0
WDSUB1	151525	broad.mit.edu	37	2	160104982	160104982	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:160104982C>T	uc002uaj.3	-	10	1323	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K	WDSUB1_uc002uak.3_Missense_Mutation_p.E392K|WDSUB1_uc002ual.3_Missense_Mutation_p.E392K|WDSUB1_uc002uam.3_Intron|WDSUB1_uc010foo.2_Missense_Mutation_p.E300K	NM_152528	NP_689741	Q8N9V3	WSDU1_HUMAN	WD repeat, sterile alpha motif and U-box domain	392	SAM.					ubiquitin ligase complex	ubiquitin-protein ligase activity				0						GTCCTGAGCTCTTCAATTTTC	0.388													7	53					0	0	0	0
KCNH7	90134	broad.mit.edu	37	2	163253401	163253401	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:163253401G>C	uc002uch.1	-	11	2674	c.2462C>G	c.(2461-2463)TCT>TGT	p.S821C		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	821	Cytoplasmic (Potential).|cNMP.				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	ATCTGCATTAGACTTTCCAGG	0.373													15	31					0	0	0	0
SCN3A	6328	broad.mit.edu	37	2	165986604	165986604	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:165986604C>T	uc002ucx.2	-	17	3260	c.2768G>A	c.(2767-2769)CGG>CAG	p.R923Q	SCN3A_uc002ucy.2_Missense_Mutation_p.R874Q|SCN3A_uc002ucz.2_Missense_Mutation_p.R874Q|SCN3A_uc002uda.1_Missense_Mutation_p.R743Q|SCN3A_uc002udb.1_Missense_Mutation_p.R743Q	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	923						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CATGTGCCACCGTGGGAGCGT	0.512													49	179					0	0	0	0
HOXD8	3234	broad.mit.edu	37	2	176996323	176996323	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:176996323G>A	uc002uko.2	+	2	1474	c.856G>A	c.(856-858)GAA>AAA	p.E286K	uc002ukm.1_5'Flank|HOXD8_uc002ukn.2_Missense_Mutation_p.E102K|HOXD8_uc002ukp.2_Missense_Mutation_p.E285K	NM_019558	NP_062458	P13378	HXD8_HUMAN	homeobox D8	286					anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		AGACAGAGCCGAAGGCCTGAC	0.423													12	29					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179403892	179403892	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:179403892C>T	uc010zfg.1	-	302	91290	c.91066G>A	c.(91066-91068)GAT>AAT	p.D30356N	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D24051N|TTN_uc010zfi.1_Missense_Mutation_p.D23984N|TTN_uc010zfj.1_Missense_Mutation_p.D23859N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31283							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACCACCATCATCTTTGGGC	0.468													16	60					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179554565	179554565	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:179554565C>G	uc010zfg.1	-	119	28313	c.28089G>C	c.(28087-28089)AAG>AAC	p.K9363N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K6024N|TTN_uc010fre.1_Missense_Mutation_p.K474N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10290							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTCCTTTTTCTTTGCAACAG	0.378													10	188					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179612368	179612368	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:179612368G>C	uc002unb.2	-	46	14983	c.14759C>G	c.(14758-14760)ACT>AGT	p.T4920S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	1043							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTGTCTTTAGTTTCAGGAAC	0.428													7	55					0	0	0	0
PLCL1	5334	broad.mit.edu	37	2	198950579	198950579	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:198950579G>A	uc010fsp.2	+	2	2629	c.2338G>A	c.(2338-2340)GAA>AAA	p.E780K	PLCL1_uc002uuv.3_Missense_Mutation_p.E701K	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	780	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TATTTTTGATGAAACTTTTGA	0.388													18	75					0	0	0	0
BMPR2	659	broad.mit.edu	37	2	203397344	203397344	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:203397344G>C	uc002uzf.3	+	9	2313	c.1165G>C	c.(1165-1167)GAA>CAA	p.E389Q	BMPR2_uc010ftr.2_Missense_Mutation_p.E389Q	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	389	Protein kinase.|Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						AGAAGTGCTAGAAGGAGCTGT	0.333													7	35					0	0	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098917	220098917	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:220098917G>C	uc002vkg.2	+	9	1285	c.1111G>C	c.(1111-1113)GAG>CAG	p.E371Q	ANKZF1_uc010zkv.1_Missense_Mutation_p.E315Q|ANKZF1_uc010zkw.1_Missense_Mutation_p.E161Q|ANKZF1_uc002vkh.2_Missense_Mutation_p.E161Q|ANKZF1_uc002vki.2_Missense_Mutation_p.E371Q|ANKZF1_uc002vkj.1_Missense_Mutation_p.E359Q	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	371						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AACAGTAAGAGAGGAGAGAAA	0.458													11	31					0	0	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098992	220098992	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:220098992G>A	uc002vkg.2	+	9	1360	c.1186G>A	c.(1186-1188)GAG>AAG	p.E396K	ANKZF1_uc010zkv.1_Missense_Mutation_p.E340K|ANKZF1_uc010zkw.1_Missense_Mutation_p.E186K|ANKZF1_uc002vkh.2_Missense_Mutation_p.E186K|ANKZF1_uc002vki.2_Missense_Mutation_p.E396K|ANKZF1_uc002vkj.1_Missense_Mutation_p.E384K	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	396						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGGCAGAATGAGGAATCTCC	0.438													24	67					0	0	0	0
CHPF	79586	broad.mit.edu	37	2	220408002	220408002	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:220408002G>A	uc002vmc.3	-	1	486	c.259C>T	c.(259-261)CGC>TGC	p.R87C	CHPF_uc010zlh.1_5'Flank|CHPF_uc002vmd.3_Missense_Mutation_p.R87C|TMEM198_uc002vme.2_5'Flank|TMEM198_uc002vmf.2_5'Flank	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	87	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GGCAAGACGCGCGGCTCCCAA	0.746													5	25					0	0	0	0
CHPF	79586	broad.mit.edu	37	2	220408070	220408070	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:220408070G>A	uc002vmc.3	-	1	418	c.191C>T	c.(190-192)TCG>TTG	p.S64L	CHPF_uc010zlh.1_5'Flank|CHPF_uc002vmd.3_Missense_Mutation_p.S64L|TMEM198_uc002vme.2_5'Flank|TMEM198_uc002vmf.2_5'Flank	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	64	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GGGCTGCACCGAGTTGGGCCG	0.756													7	19					0	0	0	0
EPHA4	2043	broad.mit.edu	37	2	222428965	222428965	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:222428965G>A	uc002vmq.2	-	3	351	c.309C>T	c.(307-309)TTC>TTT	p.F103F	EPHA4_uc002vmr.2_Silent_p.F103F|EPHA4_uc010zlm.1_Silent_p.F44F|EPHA4_uc010zln.1_Silent_p.F103F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	103	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCCTCAAGGTGAATTTAATCT	0.473													19	87					0	0	0	0
GPR55	9290	broad.mit.edu	37	2	231774833	231774833	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:231774833C>T	uc002vrg.2	-	2	1038	c.845G>A	c.(844-846)TGC>TAC	p.C282Y	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.C282Y	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	282	Helical; Name=7; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		AACATCCAGGCAGCAGTTGAC	0.512													24	80					0	0	0	0
B3GNT7	93010	broad.mit.edu	37	2	232262649	232262649	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:232262649C>T	uc002vrs.2	+	2	399	c.219C>T	c.(217-219)CCC>CCT	p.P73P		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	73	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		CGCCCACGCCCATGGCCTCTC	0.617													15	54					0	0	0	0
DIS3L2	129563	broad.mit.edu	37	2	233164768	233164768	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:233164768C>G	uc010fxz.2	+	14	1954	c.1678C>G	c.(1678-1680)CTG>GTG	p.L560V	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	560							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		TGCTTTCACTCTGGACCACGA	0.423													9	37					0	0	0	0
HES6	55502	broad.mit.edu	37	2	239148343	239148343	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:239148343C>G	uc002vxz.2	-	2	262	c.127G>C	c.(127-129)GAG>CAG	p.E43Q	HES6_uc002vya.2_Missense_Mutation_p.E43Q|HES6_uc002vyb.2_Missense_Mutation_p.E43Q	NM_018645	NP_061115	Q96HZ4	HES6_HUMAN	hairy and enhancer of split 6 isoform a	43	Helix-loop-helix motif.				cell differentiation	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1		Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.23e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.29e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.19e-08)|BRCA - Breast invasive adenocarcinoma(100;5.98e-05)|Lung(119;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TGCAGGCTCTCGTTGATCCGC	0.512													2	9					0	0	0	0
FLRT3	23767	broad.mit.edu	37	20	14307152	14307152	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:14307152C>T	uc002wov.1	-	3	1468	c.1001G>A	c.(1000-1002)TGC>TAC	p.C334Y	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.C334Y	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	334	Extracellular (Potential).|LRRCT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		TGGGGCTTGGCACATGAGCCC	0.473													22	87					0	0	0	0
DNMT3B	1789	broad.mit.edu	37	20	31385005	31385005	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:31385005G>C	uc002wyc.2	+	14	1711	c.1390G>C	c.(1390-1392)GAG>CAG	p.E464Q	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Missense_Mutation_p.E444Q|DNMT3B_uc002wye.2_Missense_Mutation_p.E444Q|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.E402Q|DNMT3B_uc010zua.1_Missense_Mutation_p.E368Q|DNMT3B_uc002wyf.2_Missense_Mutation_p.E456Q|DNMT3B_uc002wyg.2_Missense_Mutation_p.E163Q	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	464	GATA-type; atypical.|ADD.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						TCGCTTCCTTGAGCTGTTTTA	0.572													23	119					0	0	0	0
RBL1	5933	broad.mit.edu	37	20	35696531	35696531	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:35696531C>G	uc002xgi.2	-	3	428	c.349G>C	c.(349-351)GAA>CAA	p.E117Q	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.E117Q|RBL1_uc010gfv.1_RNA	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	117					cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				TCACGAAATTCTTGTGGTAGA	0.279													7	16					0	0	0	0
CHD6	84181	broad.mit.edu	37	20	40045305	40045305	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:40045305G>A	uc002xka.1	-	33	6587	c.6409C>T	c.(6409-6411)CGA>TGA	p.R2137*	CHD6_uc002xjz.1_5'Flank	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2137					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AGGCTGGTTCGAGAACCAGCA	0.587													5	88					0	0	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354422	45354422	+	Silent	SNP	C	T	T	rs41283042		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:45354422C>T	uc002xsl.2	+	2	844	c.747C>T	c.(745-747)AAC>AAT	p.N249N		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	249	Helical; Name=7; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGCAGCCCAACGTGCTGTGCT	0.617													38	112					0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60897442	60897442	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:60897442C>T	uc002ycq.2	-	47	6296	c.6229G>A	c.(6229-6231)GAG>AAG	p.E2077K		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	2077	Laminin EGF-like 21.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCGGAGCCCTCGGCGGCCGGT	0.706													4	14					0	0	0	0
PPDPF	79144	broad.mit.edu	37	20	62153084	62153084	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:62153084C>T	uc002yff.2	+	4	337	c.197C>T	c.(196-198)CCG>CTG	p.P66L		NM_024299	NP_077275	Q9H3Y8	PPDPF_HUMAN	pancreatic progenitor cell differentiation and	66					cell differentiation|multicellular organismal development						0						TCCACCCTCCCGTTCATGGCC	0.642													15	42					0	0	0	0
ZNF512B	57473	broad.mit.edu	37	20	62597952	62597952	+	Silent	SNP	G	A	A	rs143583869	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr20:62597952G>A	uc002yhl.1	-	5	630	c.576C>T	c.(574-576)ATC>ATT	p.I192I		NM_020713	NP_065764	Q96KM6	Z512B_HUMAN	zinc finger protein 512B	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					TGCTCACTCCGATGGGCTTGC	0.612													43	105					0	0	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852536	31852536	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:31852536C>T	uc011acx.1	-	1	101	c.101G>A	c.(100-102)AGA>AAA	p.R34K		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	34	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						AGAACCCCGTCTGCAGAAGCT	0.587													71	211					0	0	0	0
TTC3	7267	broad.mit.edu	37	21	38520891	38520891	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:38520891C>G	uc002yvz.2	+	23	2167	c.2062C>G	c.(2062-2064)CAC>GAC	p.H688D	TTC3_uc011aee.1_Missense_Mutation_p.H378D|TTC3_uc002ywa.2_Missense_Mutation_p.H688D|TTC3_uc002ywb.2_Missense_Mutation_p.H688D|TTC3_uc010gnf.2_Missense_Mutation_p.H453D|TTC3_uc002ywc.2_Missense_Mutation_p.H378D|TTC3_uc011aed.1_Missense_Mutation_p.H378D	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	688					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				AATAGAATTTCACATGAATTG	0.308													24	86					0	0	0	0
DYRK1A	1859	broad.mit.edu	37	21	38862551	38862551	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:38862551G>A	uc002ywk.2	+	6	814	c.739G>A	c.(739-741)GAC>AAC	p.D247N	DYRK1A_uc002ywi.2_Missense_Mutation_p.D247N|DYRK1A_uc002ywj.2_Missense_Mutation_p.D238N|DYRK1A_uc002ywl.2_Missense_Mutation_p.D247N|DYRK1A_uc002ywm.2_Missense_Mutation_p.D247N|DYRK1A_uc011aei.1_Missense_Mutation_p.D8N	NM_001396	NP_001387	Q13627	DYR1A_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	247	Protein kinase.				nervous system development|peptidyl-tyrosine phosphorylation|protein autophosphorylation	nuclear speck	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|protein self-association|protein serine/threonine kinase activity			ovary(2)|lung(1)|breast(1)	4						CAACCTCTATGACTTGCTGAG	0.413													18	66					0	0	0	0
ETS2	2114	broad.mit.edu	37	21	40193623	40193623	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:40193623G>A	uc002yxg.2	+	9	1385	c.1189G>A	c.(1189-1191)GAT>AAT	p.D397N	ETS2_uc002yxf.2_Missense_Mutation_p.D537N	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	397	ETS.				positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				CGCCGACCCCGATGAGGTATG	0.507													34	88					0	0	0	0
RIPK4	54101	broad.mit.edu	37	21	43165984	43165984	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:43165984C>T	uc002yzn.1	-	6	919	c.871G>A	c.(871-873)GAT>AAT	p.D291N		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	291						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						ACTTCGTCATCAGGCTTTTCA	0.522													31	68					0	0	0	0
ITGB2	3689	broad.mit.edu	37	21	46320373	46320373	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:46320373G>A	uc002zgd.2	-	6	803	c.759C>T	c.(757-759)CGC>CGT	p.R253R	ITGB2_uc002zge.2_Silent_p.R253R|ITGB2_uc002zgf.3_Silent_p.R253R|ITGB2_uc011afl.1_Silent_p.R175R|ITGB2_uc010gpw.2_Silent_p.R196R|ITGB2_uc002zgg.2_Silent_p.R253R	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	253	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GCGTGACGTTGCGCCAGCCGA	0.652													11	46					0	0	0	0
COL6A2	1292	broad.mit.edu	37	21	47536580	47536580	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr21:47536580G>A	uc002zia.1	+	9	1025	c.943G>A	c.(943-945)GAC>AAC	p.D315N	COL6A2_uc002zhy.1_Missense_Mutation_p.D315N|COL6A2_uc002zhz.1_Missense_Mutation_p.D315N|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	315	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		ATTTGGAGCCGACGGTCGCAA	0.617													13	32					0	0	0	0
SERPIND1	3053	broad.mit.edu	37	22	21134215	21134215	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:21134215G>A	uc002ztb.1	+	2	682	c.615G>A	c.(613-615)CTG>CTA	p.L205L	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.L233L	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	205	Glycosaminoglycan-binding site.				blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TCCGTAAGCTGACTCATCGCC	0.418													17	72					0	0	0	0
HIC2	23119	broad.mit.edu	37	22	21800507	21800507	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:21800507G>C	uc002zur.3	+	3	1553	c.1323G>C	c.(1321-1323)TTG>TTC	p.L441F	HIC2_uc002zus.3_Missense_Mutation_p.L441F	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	441					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				GGGACAACTTGTATGTGTGCA	0.622													18	102					0	0	0	0
GAS2L1	10634	broad.mit.edu	37	22	29706633	29706633	+	Silent	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:29706633G>C	uc003afa.1	+	4	946	c.747G>C	c.(745-747)CTG>CTC	p.L249L	GAS2L1_uc010gvm.1_Silent_p.L249L|GAS2L1_uc003afb.1_Silent_p.L249L|GAS2L1_uc003afc.1_Silent_p.L249L|GAS2L1_uc003afd.1_Silent_p.L249L|GAS2L1_uc003afe.1_Silent_p.L249L	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	249	GAR.				cell cycle arrest	cytoplasm|cytoskeleton					0						TGCAGGTGCTGAGGAGCCACG	0.711													4	16					0	0	0	0
MORC2	22880	broad.mit.edu	37	22	31333850	31333850	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:31333850G>A	uc003aje.1	-	15	2499	c.1135C>T	c.(1135-1137)CGA>TGA	p.R379*		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	441							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						CCCATTGCTCGGAGCAGGTGC	0.567													12	63					0	0	0	0
LIMK2	3985	broad.mit.edu	37	22	31654293	31654293	+	Missense_Mutation	SNP	G	A	A	rs35923988		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:31654293G>A	uc003akh.2	+	3	278	c.133G>A	c.(133-135)GAT>AAT	p.D45N	LIMK2_uc003akg.2_5'UTR|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.D24N|LIMK2_uc003akk.2_Missense_Mutation_p.D24N|LIMK2_uc011aln.1_5'UTR	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	45	LIM zinc-binding 1.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						AGAATGCCAGGATTCCCTCAC	0.517													15	64					0	0	0	0
LIMK2	3985	broad.mit.edu	37	22	31654368	31654368	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:31654368G>A	uc003akh.2	+	3	353	c.208G>A	c.(208-210)GAG>AAG	p.E70K	LIMK2_uc003akg.2_5'UTR|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.E49K|LIMK2_uc003akk.2_Missense_Mutation_p.E49K|LIMK2_uc011aln.1_5'UTR	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	70						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						GAAGTTTGGGGAGTTCTGTCA	0.522													17	53					0	0	0	0
CACNG2	10369	broad.mit.edu	37	22	36960607	36960607	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:36960607C>T	uc003aps.1	-	4	1045	c.763G>A	c.(763-765)GTG>ATG	p.V255M		NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	255					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TTGATGCCCACGGGGGAGGCG	0.687													32	91					0	0	0	0
Unknown	0	broad.mit.edu	37	22	38437089	38437089	+	IGR	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:38437089G>A								POLR2F (52748 upstream) : PICK1 (16173 downstream)																							cggcggctcagagaggagtga	0.055													36	151					0	0	0	0
MLC1	23209	broad.mit.edu	37	22	50500060	50500060	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:50500060G>A	uc003bjg.1	-	12	1359	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F	MLC1_uc011arl.1_Silent_p.F310F|MLC1_uc003bjh.1_Silent_p.F362F|MLC1_uc011arm.1_Silent_p.F332F|MLC1_uc011arn.1_Silent_p.F283F|MLC1_uc011aro.1_Silent_p.F328F	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	362						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		TCTCCTTGTCGAACTCCTTCA	0.652													12	56					0	0	0	0
MIOX	55586	broad.mit.edu	37	22	50927676	50927676	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr22:50927676C>T	uc003bll.1	+	7	652	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	MIOX_uc003blm.1_Nonsense_Mutation_p.Q180*|MIOX_uc003bln.1_Silent_p.I190I	NM_017584	NP_060054	Q9UGB7	MIOX_HUMAN	myo-inositol oxygenase	180					inositol catabolic process	cytoplasm|inclusion body	aldo-keto reductase (NADP) activity|ferric iron binding|inositol oxygenase activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGGGATGTATCAGCCCCACTG	0.562													4	17					0	0	0	0
LMCD1	29995	broad.mit.edu	37	3	8607273	8607273	+	Silent	SNP	A	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:8607273A>C	uc003bqq.2	+	5	993	c.879A>C	c.(877-879)GCA>GCC	p.A293A	LMCD1_uc011atd.1_Silent_p.A220A|LMCD1_uc011ate.1_Silent_p.A181A	NM_014583	NP_055398	Q9NZU5	LMCD1_HUMAN	LIM and cysteine-rich domains 1	293	LIM zinc-binding 1.				positive regulation of calcineurin-NFAT signaling pathway|regulation of cardiac muscle hypertrophy|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus	transcription corepressor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(96;0.124)		AGGATGGTGCACCCTGGTGCG	0.632													8	18					0	0	0	0
RARB	5915	broad.mit.edu	37	3	25634998	25634998	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:25634998T>G	uc011awl.1	+	6	878	c.812T>G	c.(811-813)CTT>CGT	p.L271R	RARB_uc003cdi.1_Missense_Mutation_p.L152R|RARB_uc003cdh.2_Missense_Mutation_p.L264R	NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	271	Ligand-binding.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	TTCCAGATTCTTAGAATTTGC	0.408													14	26					0	0	0	0
CMTM8	152189	broad.mit.edu	37	3	32398904	32398904	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:32398904G>C	uc003cex.2	+	2	481	c.187G>C	c.(187-189)GAG>CAG	p.E63Q	CMTM8_uc010hfu.2_Intron	NM_178868	NP_849199	Q8IZV2	CKLF8_HUMAN	CKLF-like MARVEL transmembrane domain containing	63	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						TGCTGGAACTGAGTACTTCCG	0.473													3	79					0	0	0	0
CRTAP	10491	broad.mit.edu	37	3	33171442	33171442	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:33171442G>C	uc003cfl.3	+	4	925	c.805G>C	c.(805-807)GAA>CAA	p.E269Q	CRTAP_uc010hfz.2_Intron|CRTAP_uc003cfm.2_Missense_Mutation_p.E90Q|CRTAP_uc003cfn.2_Missense_Mutation_p.E90Q	NM_006371	NP_006362	O75718	CRTAP_HUMAN	cartilage associated protein precursor	269						proteinaceous extracellular matrix	binding				0						TCATTATGTAGAAGTTCTGGA	0.373													4	49					0	0	0	0
MLH1	4292	broad.mit.edu	37	3	37048481	37048481	+	Splice_Site	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:37048481G>C	uc003cgl.2	+	5	441	c.381_splice	c.e5-1	p.R127_splice	MLH1_uc011aye.1_Splice_Site|MLH1_uc011ayb.1_Splice_Site|MLH1_uc010hge.2_Splice_Site_p.R127_splice|MLH1_uc003cgn.3_Splice_Site|MLH1_uc011ayc.1_Splice_Site_p.R29_splice|MLH1_uc011ayd.1_Splice_Site|MLH1_uc003cgo.2_Splice_Site	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1						mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TTTCTCATTAGAGCAAGTTAC	0.368		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				13	21					0	0	0	0
GOLGA4	2803	broad.mit.edu	37	3	37367779	37367779	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:37367779G>C	uc003cgv.2	+	14	4706	c.4402G>C	c.(4402-4404)GAG>CAG	p.E1468Q	GOLGA4_uc010hgr.1_Missense_Mutation_p.E1029Q|GOLGA4_uc003cgw.2_Missense_Mutation_p.E1490Q|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.E1349Q	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1468	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						GATCCAGCTTGAGTTAAAATC	0.343													4	45					0	0	0	0
TDGF1	6997	broad.mit.edu	37	3	46620773	46620773	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:46620773G>C	uc003cpv.2	+	3	420	c.140G>C	c.(139-141)AGA>ACA	p.R47T	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	47					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		CTGGCCTTCAGAGATGACAGC	0.527													7	33					0	0	0	0
MON1A	84315	broad.mit.edu	37	3	49948247	49948247	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:49948247C>T	uc003cxz.2	-	4	1101	c.975G>A	c.(973-975)TCG>TCA	p.S325S	MON1A_uc003cya.2_Silent_p.S163S|MON1A_uc003cyb.2_Silent_p.S163S	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	228							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCTCTTGTGCCGACTGCCGCG	0.582													7	19					0	0	0	0
CISH	1154	broad.mit.edu	37	3	50645484	50645484	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:50645484G>A	uc003dax.2	-	3	512	c.331C>T	c.(331-333)CAC>TAC	p.H111Y	CISH_uc010hlq.2_Missense_Mutation_p.H128Y	NM_145071	NP_659508	Q9NSE2	CISH_HUMAN	cytokine-inducible SH2-containing protein	111	SH2.				intracellular signal transduction|negative regulation of signal transduction|regulation of cell growth	intracellular					0				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		TAGCTGGGGTGCGTGCTGTCA	0.567													14	37					0	0	0	0
PHF7	51533	broad.mit.edu	37	3	52454998	52454998	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:52454998G>A	uc003ddy.2	+	7	1299	c.493G>A	c.(493-495)GAA>AAA	p.E165K	PHF7_uc003ddz.2_Missense_Mutation_p.E165K	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	165	RING-type; degenerate.					nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		CTTATGTTGTGAAGACTTATC	0.493													32	80					0	0	0	0
OR5H6	79295	broad.mit.edu	37	3	97983934	97983934	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:97983934G>A	uc003dsi.1	+	1	806	c.806G>A	c.(805-807)GGC>GAC	p.G269D		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	269	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TTATACTATGGCCCCCTCACC	0.398													13	49					0	0	0	0
ZBTB11	27107	broad.mit.edu	37	3	101373663	101373663	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:101373663C>A	uc003dve.3	-	8	2424	c.2194G>T	c.(2194-2196)GAG>TAG	p.E732*		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	732					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TACTTGGACTCTCCTATTAGA	0.343													5	54					0.000602214	0.000806636	1	0
ATP1B3	483	broad.mit.edu	37	3	141622545	141622545	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:141622545C>G	uc003eug.1	+	2	367	c.193C>G	c.(193-195)CTC>GTC	p.L65V	ATP1B3_uc011bne.1_RNA|ATP1B3_uc003euh.1_Missense_Mutation_p.L51V	NM_001679	NP_001670	P54709	AT1B3_HUMAN	Na+/K+ -ATPase beta 3 subunit	65	Extracellular (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	melanosome|sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity				0						GCTTCAGACTCTCAACGATGA	0.343													12	110					0	0	0	0
HPS3	84343	broad.mit.edu	37	3	148858878	148858878	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:148858878G>T	uc003ewu.1	+	3	927	c.787G>T	c.(787-789)GAA>TAA	p.E263*	HPS3_uc003ewt.1_Nonsense_Mutation_p.E263*|HPS3_uc011bnq.1_Nonsense_Mutation_p.E98*	NM_032383	NP_115759	Q969F9	HPS3_HUMAN	Hermansky-Pudlak syndrome 3 protein	263						cytoplasm				ovary(5)|large_intestine(1)	6			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			ACTTCTTGGTGAAAAAAGTGA	0.383									Hermansky-Pudlak_syndrome				13	73					2.27111e-07	3.15042e-07	1	0
IGSF10	285313	broad.mit.edu	37	3	151154852	151154852	+	Silent	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:151154852A>G	uc011bod.1	-	6	7497	c.7497T>C	c.(7495-7497)TAT>TAC	p.Y2499Y	IGSF10_uc011bob.1_Silent_p.Y526Y|IGSF10_uc011boc.1_Silent_p.Y478Y	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2499	Ig-like C2-type 11.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTCCTCTGTCATAAGCTGTTG	0.393													8	167					0	0	0	0
LEKR1	389170	broad.mit.edu	37	3	156763471	156763471	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:156763471G>T	uc003fba.1	+	14	2434	c.1099G>T	c.(1099-1101)GCA>TCA	p.A367S		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:Variant_position_missing_in_D3DNK7_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			CAGGGGTGGAGCATCTTCAGC	0.547													19	110					5.26018e-13	7.43812e-13	1	0
VEPH1	79674	broad.mit.edu	37	3	157146231	157146231	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:157146231C>T	uc003fbj.1	-	5	893	c.576G>A	c.(574-576)CAG>CAA	p.Q192Q	VEPH1_uc003fbk.1_Silent_p.Q192Q|VEPH1_uc010hvu.1_Silent_p.Q192Q	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	192						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			TTGGCTGAGGCTGCTTTTCAT	0.458													19	59					0	0	0	0
SLITRK3	22865	broad.mit.edu	37	3	164908029	164908029	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:164908029G>C	uc003fej.3	-	2	1034	c.590C>G	c.(589-591)TCT>TGT	p.S197C	SLITRK3_uc003fek.2_Missense_Mutation_p.S197C	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	197	Extracellular (Potential).|LRR 6.					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						ATGGGTTAAAGAGACAGCCTT	0.413										HNSCC(40;0.11)			13	68					0	0	0	0
EIF2B5	8893	broad.mit.edu	37	3	183861986	183861986	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:183861986G>A	uc003fmp.2	+	14	2333	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K	EIF2B5_uc003fmq.2_Missense_Mutation_p.E378K|EIF2B5_uc003fmr.2_Missense_Mutation_p.E65K	NM_003907	NP_003898	Q13144	EI2BE_HUMAN	eukaryotic translation initiation factor 2B,	657	W2.				astrocyte development|myelination|negative regulation of translational initiation in response to stress|oligodendrocyte development|ovarian follicle development|positive regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus|RNA metabolic process	cytosol|eukaryotic translation initiation factor 2B complex|nucleus	guanyl-nucleotide exchange factor activity|transferase activity|translation initiation factor activity|translation initiation factor binding			ovary(5)	5	all_cancers(143;7.59e-11)|Ovarian(172;0.0303)		Epithelial(37;7.06e-36)|OV - Ovarian serous cystadenocarcinoma(80;3.11e-22)			CCTAGAGCATGAAGCTCTTGG	0.502													30	171					0	0	0	0
FAM131A	131408	broad.mit.edu	37	3	184060556	184060556	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:184060556C>T	uc003fog.2	+	2	1804	c.440C>T	c.(439-441)GCG>GTG	p.A147V	FAM131A_uc003fob.1_Missense_Mutation_p.A55V|FAM131A_uc003foc.2_Missense_Mutation_p.A93V|FAM131A_uc003foe.2_Missense_Mutation_p.A93V	NM_144635	NP_653236	Q6UXB0	F131A_HUMAN	hypothetical protein LOC131408 precursor	147						extracellular region				breast(1)	1	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTTGCCATCGCGGAAGCCAAG	0.557													12	40					0	0	0	0
LPP	4026	broad.mit.edu	37	3	188327198	188327198	+	Missense_Mutation	SNP	T	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:188327198T>G	uc003frs.1	+	6	925	c.679T>G	c.(679-681)TCA>GCA	p.S227A	LPP_uc011bsg.1_Intron|LPP_uc011bsi.1_Missense_Mutation_p.S227A|LPP_uc003frt.2_Missense_Mutation_p.S227A|LPP_uc011bsj.1_Missense_Mutation_p.S64A	NM_005578	NP_005569	Q93052	LPP_HUMAN	LIM domain containing preferred translocation	227	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	soft_tissue(134)|bone(27)|lung(2)|ovary(1)|breast(1)	165	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		GCAGGTGAAGTCAGCCCAGCC	0.562			T	HMGA2|MLL|C12orf9	lipoma|leukemia								11	92					0	0	0	0
CPN2	1370	broad.mit.edu	37	3	194063020	194063020	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr3:194063020C>G	uc003fts.2	-	2	502	c.412G>C	c.(412-414)GAG>CAG	p.E138Q		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	138	LRR 2.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		AAAAGACCCTCGGGCAGAGCC	0.607													5	89					0	0	0	0
SLIT2	9353	broad.mit.edu	37	4	20530585	20530585	+	Silent	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:20530585T>C	uc003gpr.1	+	16	1680	c.1476T>C	c.(1474-1476)TAT>TAC	p.Y492Y	SLIT2_uc003gps.1_Silent_p.Y484Y	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	492					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CAGAAGATTATCGATCAAAAT	0.353													13	51					0	0	0	0
SEL1L3	23231	broad.mit.edu	37	4	25792177	25792177	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:25792177C>G	uc003gru.3	-	12	2128	c.1976G>C	c.(1975-1977)AGA>ACA	p.R659T	SEL1L3_uc003grv.2_Missense_Mutation_p.R66T	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	659						integral to membrane	binding				0						ATCTTTTAGTCTAATTGTTTC	0.249													13	41					0	0	0	0
LRRC66	339977	broad.mit.edu	37	4	52861239	52861239	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:52861239G>A	uc003gzi.2	-	4	1962	c.1949C>T	c.(1948-1950)TCA>TTA	p.S650L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	650						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GTAGTGGGCTGAAAGCGCTTC	0.532													16	40					0	0	0	0
CLOCK	9575	broad.mit.edu	37	4	56301653	56301653	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:56301653G>A	uc003haz.1	-	24	3396	c.2470C>T	c.(2470-2472)CAG>TAG	p.Q824*	CLOCK_uc003hba.1_Nonsense_Mutation_p.Q824*|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	824	Poly-Gln.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			TGCTGTTGCTGAGACTGATGT	0.527													25	56					0	0	0	0
TECRL	253017	broad.mit.edu	37	4	65274945	65274945	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:65274945G>A	uc003hcv.2	-	1	234	c.125C>T	c.(124-126)TCA>TTA	p.S42L	TECRL_uc003hcw.2_Missense_Mutation_p.S42L	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	42					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						AGGGCCCGCTGAGAGTACAAG	0.393													8	28					0	0	0	0
FAM190A	401145	broad.mit.edu	37	4	91230678	91230678	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:91230678G>C	uc003hsv.3	+	2	1583	c.1243G>C	c.(1243-1245)GAT>CAT	p.D415H	FAM190A_uc003hsu.3_Missense_Mutation_p.D415H|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.D415H	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	415										large_intestine(1)|ovary(1)	2						TCCTATTTCAGATTCAAAGAT	0.363													22	34					0	0	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95155231	95155231	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:95155231G>C	uc003htc.3	+	4	750	c.495G>C	c.(493-495)TTG>TTC	p.L165F	SMARCAD1_uc003htb.3_Missense_Mutation_p.L165F|SMARCAD1_uc003htd.3_Missense_Mutation_p.L165F|SMARCAD1_uc010ila.2_Missense_Mutation_p.L28F	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	165	CUE 1.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		ttcagactttgaaggaacttt	0.134													8	18					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114195732	114195732	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:114195732C>T	uc003ibe.3	+	15	1710	c.1610C>T	c.(1609-1611)TCT>TTT	p.S537F	ANK2_uc003ibd.3_Missense_Mutation_p.S516F|ANK2_uc003ibf.3_Missense_Mutation_p.S537F|ANK2_uc003ibc.2_Missense_Mutation_p.S513F|ANK2_uc011cgb.1_Missense_Mutation_p.S552F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	537	ANK 16.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTGCACATCTCTGCCCGGGAG	0.532													22	36					0	0	0	0
ANKRD50	57182	broad.mit.edu	37	4	125590572	125590572	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:125590572T>C	uc003ifg.3	-	3	4126	c.3860A>G	c.(3859-3861)AAA>AGA	p.K1287R	ANKRD50_uc011cgo.1_Missense_Mutation_p.K1108R|ANKRD50_uc010inw.2_Missense_Mutation_p.K1287R	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	1287	Ser-rich.									central_nervous_system(1)	1						ATTACTTTGTTTCGCTTTTTT	0.418													4	126					0	0	0	0
WDR17	116966	broad.mit.edu	37	4	177041161	177041161	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:177041161G>T	uc003iuj.2	+	5	679	c.523G>T	c.(523-525)GAT>TAT	p.D175Y	WDR17_uc003iuk.2_Missense_Mutation_p.D151Y|WDR17_uc003ium.3_Missense_Mutation_p.D151Y|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	175	WD 3.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		CTTCTTGTCTGATATCTGTAT	0.408													32	87					1.88708e-17	2.70776e-17	1	0
PLEKHG4B	153478	broad.mit.edu	37	5	171516	171516	+	Missense_Mutation	SNP	A	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:171516A>G	uc003jak.2	+	14	2989	c.2939A>G	c.(2938-2940)CAC>CGC	p.H980R		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	980	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CAGCTGCGTCACGGCAATGAC	0.667													4	30					0	0	0	0
ZDHHC11	79844	broad.mit.edu	37	5	801245	801245	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:801245C>T	uc011cma.1	-	12	1600	c.1216G>A	c.(1216-1218)GAC>AAC	p.D406N	ZDHHC11_uc010itc.2_RNA|ZDHHC11_uc003jbj.2_RNA	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	406						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			TCAGCACTGTCAGTTTTCATG	0.398													11	104					0	0	0	0
NSUN2	54888	broad.mit.edu	37	5	6605463	6605463	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:6605463C>T	uc003jdu.2	-	15	1725	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K	NSUN2_uc003jds.2_5'Flank|NSUN2_uc003jdt.2_Missense_Mutation_p.E318K|NSUN2_uc011cmk.1_Missense_Mutation_p.E519K|NSUN2_uc003jdv.2_Missense_Mutation_p.E318K	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	554						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TTCTTCCCTTCTGTAGTCCGA	0.423													22	155					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13871062	13871062	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:13871062G>A	uc003jfd.2	-	24	3690	c.3648C>T	c.(3646-3648)GTC>GTT	p.V1216V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1216	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGCGTCCAATGACAACCATCC	0.388									Kartagener_syndrome				14	68					0	0	0	0
TRIO	7204	broad.mit.edu	37	5	14291310	14291310	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:14291310G>A	uc003jff.2	+	5	1032	c.1026G>A	c.(1024-1026)CTG>CTA	p.L342L	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.L293L|TRIO_uc003jfh.1_5'Flank	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	342	Spectrin 1.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCTTCCAGCTGAGGCTGTTTG	0.587													18	56					0	0	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34033476	34033476	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:34033476C>G	uc003jin.2	-	3	371	c.284G>C	c.(283-285)CGA>CCA	p.R95P	C1QTNF3_uc003jio.2_Missense_Mutation_p.R168P	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	95	Collagen-like.					collagen					0	all_lung(31;0.0207)					CCGCTCCCCTCGAGGCCCCAG	0.562													21	64					0	0	0	0
PIK3R1	5295	broad.mit.edu	37	5	67576368	67576368	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:67576368C>G	uc003jva.2	+	6	1207	c.647C>G	c.(646-648)TCC>TGC	p.S216C	PIK3R1_uc003jvb.2_Missense_Mutation_p.S216C	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	216	Rho-GAP.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	GTACAAAGCTCCGAAGAATAT	0.343			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			26	130					0	0	0	0
PTCD2	79810	broad.mit.edu	37	5	71654230	71654230	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:71654230C>G	uc003kcb.2	+	10	1153	c.1143C>G	c.(1141-1143)CTC>CTG	p.L381L	PTCD2_uc011csf.1_Silent_p.L191L|PTCD2_uc003kcc.2_Silent_p.L229L|PTCD2_uc011csg.1_Silent_p.L209L|PTCD2_uc011csh.1_Silent_p.L272L|PTCD2_uc003kcd.2_RNA	NM_024754	NP_079030	Q8WV60	PTCD2_HUMAN	pentatricopeptide repeat domain 2	381											0		Lung NSC(167;0.00237)|Ovarian(174;0.0175)|Prostate(461;0.141)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.73e-53)		TCCAGCCACTCAGCCAGTCCC	0.517													5	15					0	0	0	0
THBS4	7060	broad.mit.edu	37	5	79355723	79355723	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:79355723G>A	uc003kgh.2	+	8	1305	c.982G>A	c.(982-984)GAT>AAT	p.D328N		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	328	EGF-like 2; calcium-binding (Potential).				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TATTGATGTTGATGAGGTAAA	0.507													41	102					0	0	0	0
ERAP1	51752	broad.mit.edu	37	5	96130758	96130758	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:96130758G>A	uc003kmm.2	-	5	1253	c.906C>T	c.(904-906)CCC>CCT	p.P302P	ERAP1_uc003kml.2_Silent_p.P302P|ERAP1_uc010jbm.1_Silent_p.P114P|ERAP1_uc003kmn.2_Silent_p.P302P	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	302	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		GTTTGGGTAGGGGATACGGTA	0.388													4	21					0	0	0	0
P4HA2	8974	broad.mit.edu	37	5	131530707	131530707	+	Silent	SNP	A	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:131530707A>C	uc003kwh.2	-	14	2013	c.1449T>G	c.(1447-1449)GCT>GCG	p.A483A	P4HA2_uc003kwg.2_Silent_p.A481A|P4HA2_uc003kwi.2_Silent_p.A481A|P4HA2_uc003kwk.2_Silent_p.A481A|P4HA2_uc003kwl.2_Silent_p.A483A|P4HA2_uc003kwj.2_Silent_p.A481A	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	483	Fe2OG dioxygenase.					endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	ACCAGAACACAGCTGTACCCT	0.542													19	52					0	0	0	0
FAM53C	51307	broad.mit.edu	37	5	137680625	137680625	+	Missense_Mutation	SNP	G	A	A	rs146380618	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:137680625G>A	uc003lcv.2	+	4	718	c.248G>A	c.(247-249)CGG>CAG	p.R83Q	FAM53C_uc003lcw.2_Missense_Mutation_p.R83Q|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	83										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CCACCCAGTCGGGGAAACTCC	0.622													24	90					0	0	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209601	140209601	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:140209601C>G	uc003lho.2	+	1	1952	c.1925C>G	c.(1924-1926)TCT>TGT	p.S642C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.S642C	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	642	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAGCGGACTCTCCGCGCCAC	0.672													25	60					0	0	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568326	140568326	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:140568326G>C	uc003liw.1	+	3	1435	c.1435G>C	c.(1435-1437)GAC>CAC	p.D479H		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	479	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACAGACAGAGACTCAGGCAC	0.652													33	236					0	0	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568883	140568883	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:140568883C>T	uc003liw.1	+	3	1992	c.1992C>T	c.(1990-1992)GAC>GAT	p.D664D		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	664	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTGGTGGACGGCTTCTCCC	0.701													6	117					0	0	0	0
GFOD1	54438	broad.mit.edu	37	6	13487002	13487002	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:13487002C>A	uc003nat.1	-	1	786	c.121G>T	c.(121-123)GAG>TAG	p.E41*	GFOD1_uc003nas.1_5'Flank|C6orf114_uc003nav.2_5'Flank	NM_018988	NP_061861	Q9NXC2	GFOD1_HUMAN	glucose-fructose oxidoreductase domain	41						extracellular region	binding|oxidoreductase activity			ovary(2)	2	Breast(50;0.0296)|Ovarian(93;0.0454)	all_hematologic(90;0.135)	Epithelial(50;0.0348)|BRCA - Breast invasive adenocarcinoma(129;0.1)|all cancers(50;0.108)			TTGGCCAGCTCCTCCGCTTCT	0.627													25	82					7.38237e-10	1.03141e-09	1	0
HIST1H4C	8364	broad.mit.edu	37	6	26104378	26104378	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:26104378G>C	uc003ngi.2	+	1	203	c.203G>C	c.(202-204)CGA>CCA	p.R68P		NM_003542	NP_003533	P62805	H4_HUMAN	histone cluster 1, H4c	68					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0						AACGTTATTCGAGACGCCGTC	0.527													10	46					0	0	0	0
ZBTB12	221527	broad.mit.edu	37	6	31867996	31867996	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:31867996G>A	uc003nyd.1	-	2	1263	c.1087C>T	c.(1087-1089)CGC>TGC	p.R363C	EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	363	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTGCCACAGCGAGGGCACATG	0.562													20	65					0	0	0	0
ZBTB12	221527	broad.mit.edu	37	6	31868111	31868111	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:31868111G>C	uc003nyd.1	-	2	1148	c.972C>G	c.(970-972)TTC>TTG	p.F324L	EHMT2_uc003nxz.1_5'Flank|EHMT2_uc003nya.1_5'Flank|EHMT2_uc003nyb.1_5'Flank|C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_5'Flank	NM_181842	NP_862825	Q9Y330	ZBT12_HUMAN	zinc finger and BTB domain containing 12	324	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCCACCTGAGAAGCCCCCAG	0.483													7	35					0	0	0	0
KIF6	221458	broad.mit.edu	37	6	39330286	39330286	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:39330286C>T	uc003oot.2	-	17	1965	c.1870G>A	c.(1870-1872)GAA>AAA	p.E624K	KIF6_uc003oos.2_Missense_Mutation_p.E75K|KIF6_uc010jwz.1_5'UTR|KIF6_uc010jxa.1_Missense_Mutation_p.E415K|KIF6_uc011dua.1_Missense_Mutation_p.E607K|KIF6_uc010jxb.1_Missense_Mutation_p.E568K	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	624	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GCCATGTTTTCCGAGATTCCT	0.512											OREG0017415	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	137					0	0	0	0
TREM2	54209	broad.mit.edu	37	6	41126780	41126780	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:41126780G>A	uc003opy.2	-	4	609	c.507C>T	c.(505-507)CCC>CCT	p.P169P	TREM2_uc003opz.2_Missense_Mutation_p.L213F|TREM2_uc010jxl.1_Intron	NM_018965	NP_061838	Q9NZC2	TREM2_HUMAN	triggering receptor expressed on myeloid cells 2	169	Extracellular (Potential).				axon guidance|humoral immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(1)	1	Ovarian(28;0.0418)|Colorectal(47;0.196)					TGGGTGGGAAGGGGATTTCTC	0.547													6	15					0	0	0	0
YIPF3	25844	broad.mit.edu	37	6	43481162	43481162	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:43481162G>A	uc003ovl.1	-	5	626	c.469C>T	c.(469-471)CTC>TTC	p.L157F	C6orf154_uc003ovk.1_5'Flank|YIPF3_uc011dvk.1_Missense_Mutation_p.L122F|YIPF3_uc010jyr.1_Missense_Mutation_p.L163F|YIPF3_uc010jys.1_5'UTR|YIPF3_uc003ovm.1_Missense_Mutation_p.L31F|YIPF3_uc010jyt.1_Missense_Mutation_p.L106F	NM_015388	NP_056203	Q9GZM5	YIPF3_HUMAN	natural killer cell-specific antigen KLIP1	157	Helical; (Potential).				cell differentiation	integral to membrane|plasma membrane|transport vesicle					0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			ACCAGCATGAGAGGTCCATAG	0.478													6	46					0	0	0	0
XPO5	57510	broad.mit.edu	37	6	43538730	43538730	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:43538730C>T	uc003ovp.2	-	4	513	c.302G>A	c.(301-303)GGA>GAA	p.G101E		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	101	Necessary for interaction with Ran.				gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			GTTCAATGTTCCCTGAAAAAG	0.408													5	127					0	0	0	0
TFAP2B	7021	broad.mit.edu	37	6	50803961	50803961	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:50803961C>T	uc003pag.2	+	4	955	c.789C>T	c.(787-789)CTC>CTT	p.L263L		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	263					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					CTGAATGCCTCAATGCATCTC	0.428													13	46					0	0	0	0
DST	667	broad.mit.edu	37	6	56437028	56437028	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:56437028G>C	uc003pdf.2	-	47	7262	c.7234C>G	c.(7234-7236)CTT>GTT	p.L2412V	DST_uc003pcz.3_Missense_Mutation_p.L2234V|DST_uc011dxj.1_Missense_Mutation_p.L2263V|DST_uc011dxk.1_Missense_Mutation_p.L2274V|DST_uc003pcy.3_Missense_Mutation_p.L1908V|DST_uc010kaa.1_RNA	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	4320					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAAACTTCAAGATGTTTCTTG	0.333													5	11					0	0	0	0
ZNF451	26036	broad.mit.edu	37	6	57012646	57012646	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:57012646C>T	uc003pdm.1	+	10	1987	c.1763C>T	c.(1762-1764)TCA>TTA	p.S588L	ZNF451_uc003pdl.2_Missense_Mutation_p.S588L|ZNF451_uc003pdn.1_Missense_Mutation_p.S588L|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.S588L	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	588					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			AAGCCTTCATCAGCTATTACT	0.393													15	62					0	0	0	0
LMBRD1	55788	broad.mit.edu	37	6	70411789	70411789	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:70411789G>A	uc003pfa.2	-	10	1087	c.972C>T	c.(970-972)TTC>TTT	p.F324F	LMBRD1_uc003pey.2_Silent_p.F120F|LMBRD1_uc003pez.2_Silent_p.F251F|LMBRD1_uc010kal.2_Silent_p.F251F|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	324	Helical; Name=6; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						ACTTTGACAAGAAGAGAGAAA	0.294													4	15					0	0	0	0
LMBRD1	55788	broad.mit.edu	37	6	70423682	70423682	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:70423682T>C	uc003pfa.2	-	9	885	c.770A>G	c.(769-771)GAT>GGT	p.D257G	LMBRD1_uc003pey.2_Missense_Mutation_p.D53G|LMBRD1_uc003pez.2_Missense_Mutation_p.D184G|LMBRD1_uc010kal.2_Missense_Mutation_p.D184G|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	257	Cytoplasmic (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						AGGTCGACCATCTTTGCTCTG	0.363													7	23					0	0	0	0
BCKDHB	594	broad.mit.edu	37	6	81053418	81053418	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:81053418G>C	uc003pjd.2	+	10	1143	c.1076G>C	c.(1075-1077)AGA>ACA	p.R359T	BCKDHB_uc003pje.2_Missense_Mutation_p.R359T	NM_000056	NP_000047	P21953	ODBB_HUMAN	branched chain keto acid dehydrogenase E1 beta	359					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|carboxy-lyase activity|protein binding				0		all_cancers(76;1.38e-05)|Acute lymphoblastic leukemia(125;1.15e-05)|all_hematologic(105;0.00118)|all_epithelial(107;0.0149)		BRCA - Breast invasive adenocarcinoma(397;0.0291)		CCTATATCAAGAGTATGTGGT	0.373													5	45					0	0	0	0
MCM9	254394	broad.mit.edu	37	6	119252640	119252640	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:119252640G>A	uc003pyh.2	-	2	512	c.249C>T	c.(247-249)TCC>TCT	p.S83S		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	83					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		GCTGAGAAAGGGACTGGAGAA	0.423													7	28					0	0	0	0
LAMA2	3908	broad.mit.edu	37	6	129687405	129687405	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:129687405G>T	uc003qbn.2	+	33	4864	c.4759G>T	c.(4759-4761)GCT>TCT	p.A1587S	LAMA2_uc003qbo.2_Missense_Mutation_p.A1587S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1587	Domain II and I.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CGGTGACTTGGCTCGCCTGGA	0.478													16	52					6.94344e-10	9.72415e-10	1	0
MAP3K5	4217	broad.mit.edu	37	6	137019686	137019686	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:137019686G>A	uc003qhc.2	-	4	1108	c.747C>T	c.(745-747)ATC>ATT	p.I249I	MAP3K5_uc011edk.1_Silent_p.I94I|MAP3K5_uc010kgw.1_Silent_p.I249I	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	249					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		GAGGTAAGCAGATGGGTCCAA	0.413													6	23					0	0	0	0
HIVEP2	3097	broad.mit.edu	37	6	143081778	143081778	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:143081778C>T	uc003qjd.2	-	9	6390	c.5647G>A	c.(5647-5649)GCA>ACA	p.A1883T		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1883					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TGCTTCTCTGCTGCTTTGTGC	0.294													4	14					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148865685	148865685	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:148865685G>A	uc003qme.1	+	18	3554	c.3079G>A	c.(3079-3081)GCC>ACC	p.A1027T	SASH1_uc011eeb.1_Missense_Mutation_p.A788T|SASH1_uc003qmf.1_Missense_Mutation_p.A437T	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	1027	Pro-rich.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GGGCAGCCCCGCCAGCCCCAC	0.701													5	37					0	0	0	0
ZBTB2	57621	broad.mit.edu	37	6	151686993	151686993	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:151686993T>C	uc003qoh.2	-	3	1343	c.1208A>G	c.(1207-1209)AAC>AGC	p.N403S		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	403	C2H2-type 3; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		GGCAGCCTGGTTGGCCCTGCA	0.517													19	51					0	0	0	0
MLLT4	4301	broad.mit.edu	37	6	168226205	168226205	+	5'Flank	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:168226205G>A	uc003qwd.2	+						MLLT4_uc003qwb.1_5'Flank|MLLT4_uc003qwc.1_5'Flank|C6orf124_uc003qwa.2_RNA	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia						adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GGCAGATAACGATGTGTCTGA	0.532			T	MLL	AL								4	11					0	0	0	0
ELFN1	392617	broad.mit.edu	37	7	1785470	1785470	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:1785470C>G	uc010ksg.2	+	2	1622	c.1238C>G	c.(1237-1239)TCC>TGC	p.S413C		NM_001128636	NP_001122108			extracellular leucine-rich repeat and												0						CCCAGCCCCTCCACGGCCACC	0.706													2	6					0	0	0	0
WIPI2	26100	broad.mit.edu	37	7	5232766	5232766	+	Nonsense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:5232766C>G	uc003snv.2	+	2	308	c.92C>G	c.(91-93)TCA>TGA	p.S31*	WIPI2_uc003snw.2_Nonsense_Mutation_p.S31*|WIPI2_uc003snx.2_Intron|WIPI2_uc003sny.2_Intron|WIPI2_uc010ksv.2_Translation_Start_Site	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	31					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		AAAGGGGCATCAAGAGCAGCT	0.388													8	98					0	0	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6086667	6086667	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:6086667C>G	uc003spp.2	-	5	651	c.505G>C	c.(505-507)GAA>CAA	p.E169Q	EIF2AK1_uc003spq.2_Missense_Mutation_p.E169Q|EIF2AK1_uc011jwm.1_Missense_Mutation_p.E45Q|EIF2AK1_uc003spr.1_5'Flank	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	169	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		ATGGCAAGTTCTTCAAATTCA	0.348													7	23					0	0	0	0
C7orf31	136895	broad.mit.edu	37	7	25218826	25218826	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:25218826C>G	uc003sxn.1	-	2	663	c.102G>C	c.(100-102)CAG>CAC	p.Q34H		NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	34											0						GAGTAACCGTCTGGAGGGGGT	0.428													14	47					0	0	0	0
NFE2L3	9603	broad.mit.edu	37	7	26224729	26224729	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:26224729G>T	uc003sxq.2	+	4	1683	c.1411G>T	c.(1411-1413)GAA>TAA	p.E471*		NM_004289	NP_004280	Q9Y4A8	NF2L3_HUMAN	nuclear factor erythroid 2-like 3	471					transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			skin(3)|ovary(1)	4						CTACTACCCAGAACCCAGTAA	0.428													27	97					6.32553e-13	8.92297e-13	1	0
BMPER	168667	broad.mit.edu	37	7	34101656	34101656	+	Missense_Mutation	SNP	G	A	A	rs139550819		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:34101656G>A	uc011kap.1	+	11	1189	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	359					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TATTTGCACTGAAAGTAAGTT	0.299													4	33					0	0	0	0
AOAH	313	broad.mit.edu	37	7	36677476	36677476	+	Missense_Mutation	SNP	A	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:36677476A>T	uc003tfh.3	-	5	832	c.431T>A	c.(430-432)GTC>GAC	p.V144D	AOAH_uc010kxf.2_Missense_Mutation_p.V144D|AOAH_uc011kba.1_Missense_Mutation_p.V112D	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	144					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GGACTTCTTGACAATTTGTCT	0.428													7	30					0	0	0	0
GTF2IP1	2970	broad.mit.edu	37	7	72617476	72617476	+	Missense_Mutation	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:72617476G>T	uc003txo.3	+	21	2345	c.1464G>T	c.(1462-1464)CAG>CAT	p.Q488H	FKBP6_uc003twz.2_Intron|GTF2IP1_uc011keq.1_Missense_Mutation_p.Q488H	NR_003580				SubName: Full=cDNA FLJ61347, highly similar to General transcription factor II-I;												0						TGGTTGATCAGAGTGAGTCAA	0.502													15	145					3.52763e-06	4.82468e-06	1	0
ABCB4	5244	broad.mit.edu	37	7	87069132	87069132	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:87069132C>T	uc003uiv.1	-	14	1658	c.1582G>A	c.(1582-1584)GAG>AAG	p.E528K	ABCB4_uc003uiw.1_Missense_Mutation_p.E528K|ABCB4_uc003uix.1_Missense_Mutation_p.E528K	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	528	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					GCCCCTCTCTCTCCAACCAGG	0.478													26	75					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88956698	88956698	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:88956698T>C	uc011khi.1	+	3	828	c.290T>C	c.(289-291)GTA>GCA	p.V97A		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	97						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GCTCGAAATGTAGCTTCTAAG	0.328										HNSCC(36;0.09)			7	50					0	0	0	0
MCM7	4176	broad.mit.edu	37	7	99696975	99696975	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:99696975C>T	uc003usw.1	-	4	838	c.328G>A	c.(328-330)GAG>AAG	p.E110K	MCM7_uc003usv.1_5'UTR|MCM7_uc003usx.1_5'UTR|AP4M1_uc011kjg.1_5'Flank|AP4M1_uc010lgl.1_5'Flank|AP4M1_uc003utb.3_5'Flank|AP4M1_uc003utc.3_5'Flank|AP4M1_uc010lgm.2_5'Flank|AP4M1_uc003utd.2_5'Flank|AP4M1_uc011kjh.1_5'Flank|AP4M1_uc003ute.3_5'Flank|AP4M1_uc003utf.3_5'Flank	NM_005916	NP_005907	P33993	MCM7_HUMAN	minichromosome maintenance complex component 7	110					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of phosphorylation|response to DNA damage stimulus|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|protein binding				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)				Atorvastatin(DB01076)	CTCCGCTGCTCCATCATTAGC	0.483													23	100					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100678577	100678577	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:100678577G>A	uc003uxp.1	+	3	3933	c.3880G>A	c.(3880-3882)GAG>AAG	p.E1294K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1294	Extracellular (Potential).|Ser-rich.|19.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GACCAGTCCTGAGGCTAGCAC	0.473													107	407					0	0	0	0
RELN	5649	broad.mit.edu	37	7	103137182	103137182	+	Missense_Mutation	SNP	T	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:103137182T>C	uc003vca.2	-	56	9144	c.8984A>G	c.(8983-8985)TAC>TGC	p.Y2995C	RELN_uc010liz.2_Missense_Mutation_p.Y2995C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2995					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GTATTTCTGGTAATCCATCTC	0.418													12	47					0	0	0	0
TMEM168	64418	broad.mit.edu	37	7	112424433	112424433	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:112424433G>A	uc003vgn.2	-	2	840	c.448C>T	c.(448-450)CGG>TGG	p.R150W	TMEM168_uc010lju.2_Missense_Mutation_p.R150W|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	150						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						AAAGTGGGCCGATGACGGACA	0.408													7	60					0	0	0	0
CADPS2	93664	broad.mit.edu	37	7	121960236	121960236	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:121960236C>T	uc010lkp.2	-	29	4037	c.3874G>A	c.(3874-3876)GAA>AAA	p.E1292K	CADPS2_uc011knx.1_Missense_Mutation_p.E667K|CADPS2_uc003vkg.3_Missense_Mutation_p.E946K|CADPS2_uc010lkq.2_Missense_Mutation_p.E1251K	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1292					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TCTTCTTCTTCGTCACTGTCT	0.413													20	78					0	0	0	0
GCC1	79571	broad.mit.edu	37	7	127222320	127222320	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:127222320G>A	uc003vma.2	-	2	2494	c.2076C>T	c.(2074-2076)GGC>GGT	p.G692G		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	692	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						GATGCCGTTCGCCCTCCTCCA	0.582													18	58					0	0	0	0
FLNC	2318	broad.mit.edu	37	7	128485033	128485033	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:128485033G>A	uc003vnz.3	+	21	3723	c.3514G>A	c.(3514-3516)GAG>AAG	p.E1172K	FLNC_uc003voa.3_Missense_Mutation_p.E1172K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1172	Filamin 10.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAAGGTCGGTGAGGCAGCCAC	0.652													13	35					0	0	0	0
STRA8	346673	broad.mit.edu	37	7	134916760	134916760	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:134916760C>G	uc011kpx.1	+	1	30	c.30C>G	c.(28-30)CTC>CTG	p.L10L		NM_182489	NP_872295	Q7Z7C7	STRA8_HUMAN	STRA8	10					DNA replication|regulation of transcription, DNA-dependent	cytoplasm|nucleus					0						ACAAGATCCTCTTTTTCAATC	0.488													16	71					0	0	0	0
TRYX3	136541	broad.mit.edu	37	7	141952098	141952098	+	Silent	SNP	G	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:141952098G>T	uc003vxb.2	-	5	989	c.669C>A	c.(667-669)ATC>ATA	p.I223I	TRYX3_uc003vxc.3_Silent_p.I223I	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	223	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					TTTTGGCATAGATGCCAACAT	0.458													7	19					0.00198382	0.00265114	1	0
TPK1	27010	broad.mit.edu	37	7	144245667	144245667	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:144245667C>T	uc003weq.2	-	8	633	c.530G>A	c.(529-531)GGA>GAA	p.G177E	TPK1_uc003weo.2_Missense_Mutation_p.G123E|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.G128E|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	177					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	ACCCTCCATTCCAGTGTCTAC	0.468													19	60					0	0	0	0
ABCF2	10061	broad.mit.edu	37	7	150920888	150920888	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:150920888C>T	uc003wjp.2	-	5	709	c.598G>A	c.(598-600)GAT>AAT	p.D200N	ABCF2_uc003wjo.1_Missense_Mutation_p.D200N	NM_007189	NP_009120	Q9UG63	ABCF2_HUMAN	ATP-binding cassette, sub-family F, member 2	200	ABC transporter 1.					ATP-binding cassette (ABC) transporter complex|mitochondrial envelope	ATP binding|ATPase activity|transporter activity			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTGTCGGCATCCAGCTCCTCC	0.602													10	14					0	0	0	0
GALNTL5	168391	broad.mit.edu	37	7	151716792	151716792	+	Missense_Mutation	SNP	G	A	A	rs149825214	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr7:151716792G>A	uc003wkp.2	+	9	1461	c.1238G>A	c.(1237-1239)CGT>CAT	p.R413H	GALNTL5_uc003wkq.2_Missense_Mutation_p.R164H|GALNTL5_uc003wkr.2_RNA|GALNTL5_uc003wks.2_RNA|GALNTL5_uc010lqf.2_Missense_Mutation_p.R302H	NM_145292	NP_660335	Q7Z4T8	GLTL5_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	413	Lumenal (Potential).					Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)	2	all_neural(206;0.187)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00427)	UCEC - Uterine corpus endometrioid carcinoma (81;0.18)|BRCA - Breast invasive adenocarcinoma(188;0.166)		ATTCGCGAGCGTGTTGAGTTA	0.423													6	53					0	0	0	0
C8orf42	157695	broad.mit.edu	37	8	444518	444518	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:444518C>G	uc003wpd.2	-	2	762	c.188G>C	c.(187-189)AGA>ACA	p.R63T	C8orf42_uc011kwg.1_Missense_Mutation_p.R63T	NM_175075	NP_778250	Q86YL5	CH042_HUMAN	hypothetical protein LOC157695	63											0		Ovarian(12;0.0481)|Colorectal(14;0.0815)|Hepatocellular(245;0.0968)|Myeloproliferative disorder(644;0.116)|all_neural(12;0.122)		Epithelial(5;5.16e-14)|OV - Ovarian serous cystadenocarcinoma(5;7.35e-07)|BRCA - Breast invasive adenocarcinoma(11;4.17e-06)|COAD - Colon adenocarcinoma(149;0.0255)		AGATTTACATCTTTCCAGGAG	0.398													5	47					0	0	0	0
MTUS1	57509	broad.mit.edu	37	8	17532707	17532707	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:17532707G>A	uc003wxv.2	-	8	3367	c.2893C>T	c.(2893-2895)CGG>TGG	p.R965W	MTUS1_uc003wxt.2_Missense_Mutation_p.R212W|MTUS1_uc011kyg.1_Missense_Mutation_p.R110W|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.R911W|MTUS1_uc003wxs.2_Missense_Mutation_p.R131W	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	965	Potential.					Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		AGCTCTCCCCGGAGGTTAACA	0.463													10	42					0	0	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19363042	19363042	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:19363042C>T	uc011kyn.1	-	4	1368	c.304G>A	c.(304-306)GAT>AAT	p.D102N	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.D102N|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.D101N|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	102	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		CCAGCAGCATCGCTGGCTTGG	0.627													20	42					0	0	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20074737	20074737	+	Missense_Mutation	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:20074737C>A	uc003wzp.2	+	12	1382	c.1168C>A	c.(1168-1170)CCA>ACA	p.P390T	ATP6V1B2_uc003wzq.1_5'Flank	NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	390					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		CAAGATTTATCCACCTATCAA	0.363													13	79					1.5842e-08	2.20279e-08	1	0
C8orf41	80185	broad.mit.edu	37	8	33357860	33357860	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:33357860G>A	uc003xjl.3	-	6	1933	c.1408C>T	c.(1408-1410)CAA>TAA	p.Q470*	C8orf41_uc010lvu.1_RNA|MAK16_uc003xjj.2_3'UTR|C8orf41_uc003xjk.3_Nonsense_Mutation_p.Q439*|C8orf41_uc010lvv.2_Intron|C8orf41_uc003xjm.3_Nonsense_Mutation_p.Q470*	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	470							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		ACCCGTCCTTGAGAACAGCGG	0.458													10	41					0	0	0	0
HGSNAT	138050	broad.mit.edu	37	8	43053070	43053070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:43053070G>A	uc003xpx.3	+	17	1749	c.1701G>A	c.(1699-1701)TGG>TGA	p.W567*		NM_152419	NP_689632	Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	595	Helical; (Potential).				lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity				0	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			AGGGGCTGTGGACAGGAACCC	0.552													6	22					0	0	0	0
RP1	6101	broad.mit.edu	37	8	55539467	55539467	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:55539467G>A	uc003xsd.1	+	4	3173	c.3025G>A	c.(3025-3027)GTT>ATT	p.V1009I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1009					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGAGACACAGGTTGGATCTCT	0.383													44	193					0	0	0	0
CYP7B1	9420	broad.mit.edu	37	8	65517375	65517375	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:65517375G>C	uc003xvj.2	-	5	1301	c.1097C>G	c.(1096-1098)TCA>TGA	p.S366*		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	366					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AATGGTGGTTGAATATGAGGA	0.443													25	36					0	0	0	0
GEM	2669	broad.mit.edu	37	8	95272531	95272531	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:95272531G>C	uc003ygj.2	-	2	450	c.201C>G	c.(199-201)ATC>ATG	p.I67M	GEM_uc003ygi.2_Missense_Mutation_p.I67M	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	67					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			ACTCAGAGGAGATGACTGAGT	0.587													11	53					0	0	0	0
RNF19A	25897	broad.mit.edu	37	8	101287254	101287254	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:101287254C>G	uc003yjj.1	-	4	1127	c.810G>C	c.(808-810)GAG>GAC	p.E270D	RNF19A_uc003yjk.1_Missense_Mutation_p.E270D	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	270					microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			TCTGGGCTCTCTCTTGTCGAG	0.428													10	69					0	0	0	0
EPPK1	83481	broad.mit.edu	37	8	144942096	144942096	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:144942096C>T	uc003zaa.1	-	1	5339	c.5326G>A	c.(5326-5328)GTG>ATG	p.V1776M		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1776						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GATTGCAACACGTGTCTCGTG	0.527													6	65					0	0	0	0
CPSF1	29894	broad.mit.edu	37	8	145623786	145623786	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:145623786G>A	uc003zcj.2	-	19	1875	c.1800C>T	c.(1798-1800)TTC>TTT	p.F600F		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	600					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			CCTGAGTGGCGAAGCCACTGG	0.657													6	181					0	0	0	0
DOCK8	81704	broad.mit.edu	37	9	368027	368027	+	Silent	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:368027C>G	uc003zgf.2	+	15	1801	c.1689C>G	c.(1687-1689)CTC>CTG	p.L563L	DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Silent_p.L495L|DOCK8_uc010mgw.1_5'UTR|DOCK8_uc003zgk.2_5'UTR|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	563	DHR-1.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		GAAACCTTCTCTATGTCTACC	0.378													9	56					0	0	0	0
VLDLR	7436	broad.mit.edu	37	9	2645067	2645067	+	Missense_Mutation	SNP	G	A	A	rs140062795	byFrequency	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:2645067G>A	uc003zhk.1	+	9	1694	c.1297G>A	c.(1297-1299)GTG>ATG	p.V433M	VLDLR_uc003zhl.1_Missense_Mutation_p.V433M|VLDLR_uc003zhm.1_RNA|VLDLR_uc003zhn.1_Missense_Mutation_p.V392M	NM_003383	NP_003374	P98155	VLDLR_HUMAN	very low density lipoprotein receptor isoform a	433	Extracellular (Potential).|EGF-like 2; calcium-binding (Potential).				cholesterol metabolic process|endocytosis|lipid transport|memory|very-low-density lipoprotein particle clearance	coated pit|integral to membrane|membrane fraction|plasma membrane|very-low-density lipoprotein particle	apolipoprotein binding|calcium ion binding|low-density lipoprotein receptor activity|very-low-density lipoprotein particle receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(50;0.0668)|Lung(218;0.123)		TGCTACTGGCGTGTGCAAGGC	0.418													6	108					0	0	0	0
KIAA2026	158358	broad.mit.edu	37	9	5922659	5922659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:5922659G>A	uc003zjq.3	-	8	3553	c.3337C>T	c.(3337-3339)CAG>TAG	p.Q1113*	KIAA2026_uc010mht.2_Nonsense_Mutation_p.Q288*	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1113										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TCTTTATGCTGAATCACAAAA	0.373													27	100					0	0	0	0
TESK1	7016	broad.mit.edu	37	9	35605991	35605991	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:35605991G>C	uc003zxa.2	+	2	566	c.230G>C	c.(229-231)CGA>CCA	p.R77P	TESK1_uc003zwz.1_RNA|TESK1_uc010mks.2_5'UTR	NM_006285	NP_006276	Q15569	TESK1_HUMAN	testis-specific protein kinase 1	77	Protein kinase.				cell junction assembly|spermatogenesis	cytosol	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|breast(2)|lung(1)|ovary(1)|skin(1)	7			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			GTTCGGCACCGACAGTCAGGG	0.672													5	71					0	0	0	0
TESK1	7016	broad.mit.edu	37	9	35606017	35606017	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:35606017A>C	uc003zxa.2	+	2	592	c.256A>C	c.(256-258)AAG>CAG	p.K86Q	TESK1_uc003zwz.1_RNA|TESK1_uc010mks.2_5'UTR	NM_006285	NP_006276	Q15569	TESK1_HUMAN	testis-specific protein kinase 1	86	Protein kinase.	ATP (By similarity).			cell junction assembly|spermatogenesis	cytosol	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|breast(2)|lung(1)|ovary(1)|skin(1)	7			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CATGGTGCTGAAGATGAACAA	0.657													5	70					0	0	0	0
FBXO10	26267	broad.mit.edu	37	9	37531963	37531963	+	Missense_Mutation	SNP	A	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:37531963A>C	uc004aab.2	-	4	1561	c.1512T>G	c.(1510-1512)ATT>ATG	p.I504M	FBXO10_uc004aac.2_Missense_Mutation_p.I520M|FBXO10_uc004aad.2_Missense_Mutation_p.I54M	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	504	PbH1 6.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CATTGTGGTAAATGTTGTTGC	0.502													15	45					0	0	0	0
TMC1	117531	broad.mit.edu	37	9	75441857	75441857	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:75441857C>G	uc004aiz.1	+	21	2616	c.2076C>G	c.(2074-2076)ATC>ATG	p.I692M	TMC1_uc010moz.1_Missense_Mutation_p.I650M|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_Missense_Mutation_p.I546M|TMC1_uc010mpa.1_Missense_Mutation_p.I546M	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	692	Extracellular (Potential).				sensory perception of sound	integral to membrane				ovary(1)	1						TGGCGAAGATCTTGAGACAGC	0.463													47	151					0	0	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607429	84607429	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:84607429G>A	uc004amn.2	+	4	2091	c.2044G>A	c.(2044-2046)GAG>AAG	p.E682K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	682						integral to membrane					0						ACTCAGCTCTGAGGTAAGGAA	0.507													15	85					0	0	0	0
AGTPBP1	23287	broad.mit.edu	37	9	88247624	88247624	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:88247624C>T	uc011ltd.1	-	13	2001	c.1968G>A	c.(1966-1968)CCG>CCA	p.P656P	AGTPBP1_uc004aod.3_Silent_p.P282P|AGTPBP1_uc011ltc.1_Silent_p.P554P|AGTPBP1_uc010mqc.2_Silent_p.P616P|AGTPBP1_uc011lte.1_Silent_p.P668P	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	656					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TGAATGGAGGCGGAATGTGAC	0.403													11	56					0	0	0	0
FAM75C1	441452	broad.mit.edu	37	9	90537484	90537484	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:90537484G>C	uc010mqi.2	+	4	2691	c.2662G>C	c.(2662-2664)GAT>CAT	p.D888H	FAM75C1_uc004apq.3_Missense_Mutation_p.D871H	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						GCTCCTTCCAGATGGGCAAGC	0.552													6	157					0	0	0	0
Unknown	0	broad.mit.edu	37	9	90746769	90746769	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:90746769G>C	uc011lti.1	-	4	1212	c.1183C>G	c.(1183-1185)CAG>GAG	p.Q395E						SubName: Full=cDNA FLJ59639;																		TCAGGGTGCTGAGTTTCAGGT	0.498													60	258					0	0	0	0
WDR31	114987	broad.mit.edu	37	9	116079162	116079162	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:116079162C>G	uc004bhe.2	-	11	1223	c.971G>C	c.(970-972)GGA>GCA	p.G324A	uc004bhb.2_5'Flank|WDR31_uc004bhc.2_Missense_Mutation_p.G323A|WDR31_uc004bhd.2_Missense_Mutation_p.G199A|WDR31_uc004bhf.2_RNA	NM_001012361	NP_001012361	Q8NA23	WDR31_HUMAN	WD repeat domain 31 isoform 1	324											0						GGGTCCTGATCCATCCAGAGA	0.483													17	32					0	0	0	0
ZNF618	114991	broad.mit.edu	37	9	116812166	116812166	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:116812166G>A	uc004bid.2	+	15	2683	c.2584G>A	c.(2584-2586)GCA>ACA	p.A862T	ZNF618_uc004bic.2_Missense_Mutation_p.A769T|ZNF618_uc011lxi.1_Missense_Mutation_p.A829T|ZNF618_uc011lxj.1_Missense_Mutation_p.A830T|ZNF618_uc010mvb.2_Missense_Mutation_p.A452T	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	862					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGAGAACCCCGCAGCTCAGGA	0.597													6	108					0	0	0	0
LRSAM1	90678	broad.mit.edu	37	9	130263293	130263293	+	Silent	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:130263293G>A	uc004brb.1	+	25	2262	c.1917G>A	c.(1915-1917)CTG>CTA	p.L639L	LRSAM1_uc010mxk.1_Silent_p.L612L|LRSAM1_uc004brc.1_Silent_p.L639L|LRSAM1_uc004brd.1_Silent_p.L639L|LRSAM1_uc004bre.1_Silent_p.L219L|LRSAM1_uc004brg.1_Silent_p.L70L	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	639					negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						CCACAGAGCTGAAACCACCAA	0.647													20	71					0	0	0	0
FAM129B	64855	broad.mit.edu	37	9	130270171	130270171	+	Missense_Mutation	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:130270171C>G	uc004brh.2	-	13	1831	c.1629G>C	c.(1627-1629)CAG>CAC	p.Q543H	FAM129B_uc004bri.2_Missense_Mutation_p.Q530H|FAM129B_uc004brj.3_3'UTR	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	543							protein binding				0						TCATGACGGTCTGCAGCACCA	0.642													13	95					0	0	0	0
C9orf96	169436	broad.mit.edu	37	9	136260786	136260786	+	Silent	SNP	C	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr9:136260786C>A	uc004cdk.2	+	9	823	c.762C>A	c.(760-762)GCC>GCA	p.A254A	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	254	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GCCTGAAGGCCGTCCTGAAGA	0.557													29	66					3.65163e-15	5.20134e-15	1	0
CXorf22	170063	broad.mit.edu	37	X	35974178	35974178	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:35974178C>T	uc004ddj.2	+	8	1334	c.1275C>T	c.(1273-1275)TTC>TTT	p.F425F	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	425										large_intestine(1)|lung(1)|ovary(1)	3						AACCTTGTTTCATGGGTGAAC	0.363													17	15					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53618007	53618007	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:53618007C>T	uc004dsp.2	-	34	4450	c.4048G>A	c.(4048-4050)GAG>AAG	p.E1350K	HUWE1_uc004dsn.2_Missense_Mutation_p.E175K	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1350	UBA.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AAAAGGTACTCTGTGGCCTGC	0.498													14	11					0	0	0	0
NHSL2	340527	broad.mit.edu	37	X	71359916	71359916	+	Missense_Mutation	SNP	G	C	C			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:71359916G>C	uc011mqa.1	+	6	2518	c.2518G>C	c.(2518-2520)GAG>CAG	p.E840Q	NHSL2_uc004eak.1_Missense_Mutation_p.E474Q|NHSL2_uc010nli.2_Missense_Mutation_p.E609Q	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	840											0	Renal(35;0.156)					CAGCAAGTCTGAGCCGGAAGA	0.522													7	15					0	0	0	0
ELF4	2000	broad.mit.edu	37	X	129201444	129201444	+	Missense_Mutation	SNP	G	A	A			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:129201444G>A	uc004evd.3	-	9	1629	c.1244C>T	c.(1243-1245)TCG>TTG	p.S415L	ELF4_uc004eve.3_Missense_Mutation_p.S415L	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	415					natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGTCAGGGCCGAGCCCGACCC	0.587			T	ERG	AML								25	38					0	0	0	0
ARHGEF6	9459	broad.mit.edu	37	X	135795499	135795499	+	Missense_Mutation	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:135795499C>T	uc004fab.2	-	7	1225	c.763G>A	c.(763-765)GAA>AAA	p.E255K	ARHGEF6_uc011mwd.1_Missense_Mutation_p.E128K|ARHGEF6_uc011mwe.1_Missense_Mutation_p.E101K	NM_004840	NP_004831	Q15052	ARHG6_HUMAN	Rac/Cdc42 guanine nucleotide exchange factor 6	255	DH.				apoptosis|cell junction assembly|induction of apoptosis by extracellular signals|JNK cascade|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity				0	Acute lymphoblastic leukemia(192;0.000127)					TTAGCATATTCTTTTTCAGTG	0.328													24	28					0	0	0	0
PNCK	139728	broad.mit.edu	37	X	152936781	152936781	+	Silent	SNP	C	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrX:152936781C>T	uc011myu.1	-	7	1008	c.822G>A	c.(820-822)AAG>AAA	p.K274K	PNCK_uc011myt.1_Silent_p.K208K|PNCK_uc004fia.2_Silent_p.K226K|PNCK_uc004fhz.3_Silent_p.K89K|PNCK_uc010nuh.2_3'UTR|PNCK_uc011myv.1_3'UTR|PNCK_uc011myw.1_3'UTR	NM_001039582	NP_001034671	Q6P2M8	KCC1B_HUMAN	pregnancy upregulated non-ubiquitously expressed	191	Protein kinase.					cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CATCTACGGCCTTCCCGTAGG	0.642													4	38					0	0	0	0
RBMY2EP	159125	broad.mit.edu	37	Y	23563387	23563387	+	RNA	SNP	C	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chrY:23563387C>G	uc004fun.1	-	1		c.62G>C				NR_001574				Homo sapiens RNA binding motif protein, Y-linked, family 2, member E pseudogene (RBMY2EP), non-coding RNA.												0						CCATGTTTCTCAAATACTGCT	0.318													7	8					0	0	0	0
IGSF9	57549	broad.mit.edu	37	1	159912846	159912846	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:159912846delG	uc001fur.2	-	3	352	c.154delC	c.(154-156)CTGfs	p.L52fs	IGSF9_uc001fuq.2_Frame_Shift_Del_p.L52fs	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	52	Ig-like 1.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGACATGCAgggggggccgg	0.522													---	---	---							
FASLG	356	broad.mit.edu	37	1	172633495	172633495	+	Frame_Shift_Del	DEL	A	-	-	rs35774809		TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr1:172633495delA	uc001gis.2	+	3	573	c.416delA	c.(415-417)GAAfs	p.E139fs	FASLG_uc001git.2_Frame_Shift_Del_p.K124fs	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	139	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						CCACCCCCTGAAAAAAAGGAG	0.408													---	---	---							
Unknown	0	broad.mit.edu	37	10	22498484	22498485	+	IGR	INS	-	AGA	AGA	rs140751641	by1000genomes	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:22498484_22498485insAGA								DNAJC1 (205834 upstream) : COMMD3 (106814 downstream)																							CAATGCCTATCAGATCACAGCA	0.455													---	---	---							
LCOR	84458	broad.mit.edu	37	10	98715469	98715469	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr10:98715469delA	uc001kms.1	+	8	1613	c.1092delA	c.(1090-1092)GGAfs	p.G364fs	LCOR_uc001kmr.2_Frame_Shift_Del_p.G364fs|C10orf12_uc009xvg.1_Intron|LCOR_uc001kmt.1_Frame_Shift_Del_p.G364fs|LCOR_uc001kmu.1_Frame_Shift_Del_p.G364fs	NM_032440	NP_115816	Q96JN0	LCOR_HUMAN	ligand dependent nuclear receptor corepressor	364	HTH psq-type.					nucleus	DNA binding			ovary(3)	3		Colorectal(252;0.162)		Epithelial(162;4.43e-09)|all cancers(201;2.96e-07)		TTATGAGTGGAAAAATGAGTG	0.468													---	---	---							
SIRT3	23410	broad.mit.edu	37	11	236149	236149	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:236149delG	uc001lok.3	-	1	214	c.180delC	c.(178-180)CCCfs	p.P60fs	SIRT3_uc001loj.3_Intron|SIRT3_uc010qvm.1_Frame_Shift_Del_p.P60fs|SIRT3_uc010qvn.1_Intron|SIRT3_uc010qvo.1_Frame_Shift_Del_p.P60fs|SIRT3_uc010qvp.1_Frame_Shift_Del_p.P60fs|SIRT3_uc010qvq.1_Intron|SIRT3_uc009ybt.1_Intron|PSMD13_uc010qvr.1_5'Flank|PSMD13_uc001lol.2_5'Flank|PSMD13_uc001loo.2_5'Flank|PSMD13_uc001lon.2_5'Flank|PSMD13_uc001lom.2_5'Flank	NM_012239	NP_036371	Q9NTG7	SIRT3_HUMAN	sirtuin 3 isoform a	60					chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding			urinary_tract(1)	1		all_cancers(49;1.58e-09)|all_epithelial(84;2.71e-06)|Breast(177;0.000162)|Ovarian(85;0.000626)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;3.66e-27)|Epithelial(43;2.02e-26)|OV - Ovarian serous cystadenocarcinoma(40;2.9e-21)|BRCA - Breast invasive adenocarcinoma(625;3.88e-05)|Lung(200;0.111)|LUSC - Lung squamous cell carcinoma(625;0.129)		CCGGGTCCAAGGGCTCACCGC	0.701													---	---	---							
ILK	3611	broad.mit.edu	37	11	6629392	6629392	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:6629392delC	uc001mee.2	+	3	341	c.206delC	c.(205-207)ACCfs	p.T69fs	ILK_uc001mef.2_Frame_Shift_Del_p.T69fs|ILK_uc010rap.1_Intron|ILK_uc010raq.1_Frame_Shift_Del_p.T69fs|ILK_uc001meg.2_5'UTR|ILK_uc001meh.2_Frame_Shift_Del_p.T69fs|ILK_uc001mei.2_5'Flank	NM_001014794	NP_001014794	Q13418	ILK_HUMAN	integrin-linked kinase	69	Interaction with LIMS1.|ANK 3.				cell junction assembly|cell proliferation|cell-matrix adhesion|integrin-mediated signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of phosphorylation|positive regulation of transcription, DNA-dependent	cytosol|focal adhesion	ATP binding|protein serine/threonine kinase activity			central_nervous_system(1)	1		Breast(177;7.61e-05)|Medulloblastoma(188;0.00263)|all_neural(188;0.026)|all_lung(207;0.152)		Epithelial(150;5.49e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00012)|Lung(200;0.00942)|LUSC - Lung squamous cell carcinoma(625;0.0163)		GGGGATGACACCCCCCTGCAT	0.557													---	---	---							
CCDC73	493860	broad.mit.edu	37	11	32635181	32635181	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:32635181delT	uc001mtv.2	-	16	2727	c.2683delA	c.(2683-2685)ACTfs	p.T895fs		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	895										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					GTTTTCTCAGTTTTTTTATCT	0.403													---	---	---							
FOLR1	2348	broad.mit.edu	37	11	71903275	71903275	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:71903275delG	uc001orz.1	+	3	196	c.58delG	c.(58-60)GGGfs	p.G20fs	FOLR1_uc001osa.1_Frame_Shift_Del_p.G20fs|FOLR1_uc001osb.1_Frame_Shift_Del_p.G20fs|FOLR1_uc001osc.1_Frame_Shift_Del_p.G20fs|FOLR1_uc001osd.1_Frame_Shift_Del_p.G20fs	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	20					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						GGCTGTAGTAGGGGAGGCTCA	0.552													---	---	---							
YAP1	10413	broad.mit.edu	37	11	101981721	101981721	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr11:101981721delC	uc001pgt.2	+	1	512	c.142delC	c.(142-144)CCCfs	p.P48fs	YAP1_uc001pgs.2_Frame_Shift_Del_p.P48fs|YAP1_uc001pgu.2_Frame_Shift_Del_p.P48fs|YAP1_uc001pgv.2_Frame_Shift_Del_p.P48fs|YAP1_uc010ruo.1_5'Flank	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	48	Pro-rich.				cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		GCCGCAGGCACCCCCCGCCGG	0.761													---	---	---							
ITPR2	3709	broad.mit.edu	37	12	26714879	26714879	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr12:26714879delT	uc001rhg.2	-	35	5054	c.4637delA	c.(4636-4638)AATfs	p.N1546fs		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1546	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					AATTCCACGATTTTTTGCTGA	0.318													---	---	---							
ZNF828	283489	broad.mit.edu	37	13	115090767	115090767	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr13:115090767delT	uc010ahb.2	+	3	1779	c.1450delT	c.(1450-1452)TTTfs	p.F484fs	ZNF828_uc001vuv.2_Frame_Shift_Del_p.F484fs|ZNF828_uc010tko.1_Frame_Shift_Del_p.F484fs	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	484	Mediates localization to the spindle and the kinetochore and is required for the attachment of spindle microtubules to the kinetochore.|Mediates interaction with MAD2L2.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		GAAGTCTTCCTTTTTTATTGA	0.507													---	---	---							
OR4N3P	390539	broad.mit.edu	37	15	22414296	22414299	+	Frame_Shift_Del	DEL	CTTC	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:22414296_22414299delCTTC	uc001yuf.2	+	1	595_598	c.595_598delCTTC	c.(595-600)CTTCCTfs	p.L199fs		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						CACAGTGATTCTTCCTTTGTTGAA	0.417													---	---	---							
STRC	161497	broad.mit.edu	37	15	43910158	43910158	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:43910158delG	uc001zsf.2	-	2	539	c.461delC	c.(460-462)CCTfs	p.P154fs	STRC_uc010bdl.2_5'UTR|STRC_uc010udz.1_RNA|STRC_uc001zsg.1_Frame_Shift_Del_p.P80fs	NM_153700	NP_714544	Q7RTU9	STRC_HUMAN	stereocilin precursor	154					sensory perception of sound	cell surface					0		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		AGTTGGGGTAGGGGGGCCCCC	0.642													---	---	---							
SLTM	79811	broad.mit.edu	37	15	59186129	59186129	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr15:59186129delT	uc002afp.2	-	12	1627	c.1539delA	c.(1537-1539)AAAfs	p.K513fs	SLTM_uc002afn.2_Frame_Shift_Del_p.K82fs|SLTM_uc002afo.2_Frame_Shift_Del_p.K495fs|SLTM_uc002afq.2_Frame_Shift_Del_p.K82fs|SLTM_uc010bgd.2_Frame_Shift_Del_p.K82fs	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	513					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						CCTTGCTTTCTTTTTTTTCAG	0.358													---	---	---							
ANKRD11	29123	broad.mit.edu	37	16	89352507	89352508	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr16:89352507_89352508insG	uc002fmx.1	-	8	1292_1293	c.831_832insC	c.(829-834)CCCACGfs	p.P277fs	ANKRD11_uc002fmy.1_Frame_Shift_Ins_p.P277fs|ANKRD11_uc002fnc.1_Frame_Shift_Ins_p.P277fs|ANKRD11_uc002fnb.1_Frame_Shift_Ins_p.P234fs	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	277_278	ANK 4.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TTCACCATCGTGGGGGAGTTGG	0.574													---	---	---							
ABR	29	broad.mit.edu	37	17	1028559	1028559	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:1028559delC	uc002fsd.2	-	2	315	c.205delG	c.(205-207)GATfs	p.D69fs	ABR_uc002fse.2_Frame_Shift_Del_p.D23fs|ABR_uc010cjq.1_Frame_Shift_Del_p.D81fs	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	69					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GAGACGCCATCCCCCCCGCCC	0.677													---	---	---							
GPR179	440435	broad.mit.edu	37	17	36486166	36486166	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr17:36486166delG	uc002hpz.2	-	11	3307	c.3286delC	c.(3286-3288)CGTfs	p.R1096fs		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1096	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				CTCCGAGAACGGGTCAGAGCT	0.612													---	---	---							
NDC80	10403	broad.mit.edu	37	18	2578095	2578096	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:2578095_2578096delAC	uc002kli.2	+	5	613_614	c.431_432delAC	c.(430-432)GACfs	p.D144fs		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2	144	Interaction with the N-terminus of CDCA1.|Nuclear localization.|Interaction with RB1.				attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						GAACTTCCTGACACAAAGTTTG	0.386													---	---	---							
PTPN2	5771	broad.mit.edu	37	18	12814324	12814325	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr18:12814324_12814325insT	uc002krp.2	-	7	929_930	c.735_736insA	c.(733-738)AAACAAfs	p.K245fs	PTPN2_uc002krl.2_Frame_Shift_Ins_p.K245fs|PTPN2_uc002krn.2_Frame_Shift_Ins_p.K268fs|PTPN2_uc002kro.2_Frame_Shift_Ins_p.K245fs|PTPN2_uc002krm.2_Frame_Shift_Ins_p.K245fs	NM_002828	NP_002819	P17706	PTN2_HUMAN	protein tyrosine phosphatase, non-receptor type	245_246	Tyrosine-protein phosphatase.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway	endoplasmic reticulum|nucleoplasm	protein binding			skin(2)	2		Lung NSC(161;8.94e-06)				AGTAACACTTGTTTTATGTTAA	0.356													---	---	---							
SPRED3	399473	broad.mit.edu	37	19	38885397	38885397	+	Frame_Shift_Del	DEL	C	-	-	rs142553701	by1000genomes	TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr19:38885397delC	uc002oim.2	+	4	542	c.538delC	c.(538-540)CCCfs	p.P180fs		NM_001042522	NP_001035987	Q2MJR0	SPRE3_HUMAN	sprouty-related, EVH1 domain containing 3	180					multicellular organismal development					central_nervous_system(2)|lung(1)|skin(1)	4	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCGACCACGCCCCCCCAGCG	0.731													---	---	---							
GTF3C2	2976	broad.mit.edu	37	2	27559195	27559195	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:27559195delC	uc002rjv.1	-	9	1588	c.1225delG	c.(1225-1227)GCAfs	p.A409fs	GTF3C2_uc010eyy.1_5'Flank|GTF3C2_uc002rju.1_Frame_Shift_Del_p.A420fs|GTF3C2_uc002rjw.1_Frame_Shift_Del_p.A409fs|GTF3C2_uc010eyz.1_Frame_Shift_Del_p.A409fs|uc002rjy.1_RNA	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	409						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAGGCTCCTGCCCCCTCTGGC	0.592													---	---	---							
Unknown	0	broad.mit.edu	37	2	53713377	53713377	+	IGR	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:53713377delT								None (None upstream) : ASB3 (183741 downstream)																							CATCTTGGGGTTTTTTTTGGA	0.358													---	---	---							
Unknown	0	broad.mit.edu	37	2	64602807	64602809	+	IGR	DEL	ACC	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr2:64602807_64602809delACC								PELI1 (231202 upstream) : HSPC159 (78518 downstream)																							ccataccactaccaccaccacca	0.025													---	---	---							
PCGF3	10336	broad.mit.edu	37	4	728799	728799	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:728799delC	uc011bva.1	+	6	664	c.189delC	c.(187-189)CACfs	p.H63fs	PCGF3_uc003gbc.1_RNA|PCGF3_uc003gbd.1_RNA|PCGF3_uc003gbe.2_Frame_Shift_Del_p.H63fs|PCGF3_uc010ibh.2_Frame_Shift_Del_p.H63fs|PCGF3_uc003gbg.1_Frame_Shift_Del_p.H29fs|PCGF3_uc003gbh.2_Frame_Shift_Del_p.H29fs	NM_006315	NP_006306	Q3KNV8	PCGF3_HUMAN	ring finger protein 3	63					regulation of transcription, DNA-dependent|transcription, DNA-dependent	PcG protein complex	zinc ion binding				0						ACCAGAGCCACCCCCTGCAGT	0.607													---	---	---							
FRYL	285527	broad.mit.edu	37	4	48608509	48608509	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr4:48608509delA	uc003gyh.1	-	10	1292	c.687delT	c.(685-687)TTTfs	p.F229fs	FRYL_uc003gyk.2_Frame_Shift_Del_p.F229fs	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TTTTTACTCGAAAAAATTTCA	0.348													---	---	---							
Unknown	0	broad.mit.edu	37	5	163111074	163111075	+	IGR	INS	-	T	T			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr5:163111074_163111075insT								MAT2B (164741 upstream) : None (None downstream)																							TGTCGCATTTCTTTTTtttttt	0.158													---	---	---							
IFNGR1	3459	broad.mit.edu	37	6	137519505	137519506	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr6:137519505_137519506delCT	uc003qho.2	-	7	1235_1236	c.1132_1133delAG	c.(1132-1134)AGTfs	p.S378fs	IFNGR1_uc011edm.1_Frame_Shift_Del_p.S350fs	NM_000416	NP_000407	P15260	INGR1_HUMAN	interferon gamma receptor 1 precursor	378	Cytoplasmic (Potential).				regulation of interferon-gamma-mediated signaling pathway|response to virus	integral to plasma membrane	interferon-gamma receptor activity			upper_aerodigestive_tract(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000829)|OV - Ovarian serous cystadenocarcinoma(155;0.00389)	Interferon gamma-1b(DB00033)	AGGTGAAGAACTCTCTCTCTCT	0.431													---	---	---							
LEPROTL1	23484	broad.mit.edu	37	8	29961841	29961841	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CR-5248-01A-01D-2012-08	TCGA-CR-5248-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5af63d7-e8b2-4a76-8b39-6ee652ad8e5f	b9d347d7-5df5-4605-ba32-02b85ae3ecda	g.chr8:29961841delT	uc003xhw.3	+	3	225	c.118delT	c.(118-120)TTTfs	p.F40fs	LEPROTL1_uc003xhx.2_Frame_Shift_Del_p.F40fs	NM_015344	NP_056159	O95214	LERL1_HUMAN	leptin receptor overlapping transcript-like 1	40	Helical; (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.094)|Kidney(114;0.113)		CTTTGTTCTATTTTTTTACAT	0.323													---	---	---							
