Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
EPHB2	2048	genome.wustl.edu	37	1	23240246	23240246	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400191	+1	known	p.G1017	0.270	230	0.9%	353	22.9%	0	-	-	-	-	NULL
TCEB3	6924	genome.wustl.edu	37	1	24077452	24077452	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003198.2	+1	reviewed	p.T145	0.237	67	0%	91	22%	1	0%	-	-	-	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35476599	35476599	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007167.3	-1	validated	p.A367	0.171	114	0%	74	18.9%	5	0%	-	-	-	NULL
TRAPPC3	27095	genome.wustl.edu	37	1	36602873	36602873	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014408.3	-1	provisional	p.D158	0.982	187	0%	247	14.6%	59	28.8%	-	-	-	HMMPfam_TRAPP
TIE1	7075	genome.wustl.edu	37	1	43775103	43775103	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005424.2	+1	provisional	p.F411	0.783	225	0%	320	19.4%	17	0%	-	-	-	HMMPfam_ig,superfamily_SSF48726
PTPRF	5792	genome.wustl.edu	37	1	44069586	44069586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002840.3	+1	reviewed	p.N921K	1.000	52	0%	44	18.2%	17	0%	probably_damaging(0.975)	tolerated(0.11)	deleterious(0.689)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CYP4A11	1579	genome.wustl.edu	37	1	47401210	47401210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000778.3	-1	reviewed	p.S207N	0.346	185	0%	226	16.4%	0	-	benign(0.016)	tolerated(1)	neutral(0.001)	HMMPfam_p450,superfamily_Cytochrome P450
DOCK7	85440	genome.wustl.edu	37	1	62953084	62953084	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033407.2	-1	validated	e42-1	1.000	140	0%	154	11%	0	-	-	-	-	-
ANGPTL3	27329	genome.wustl.edu	37	1	63064423	63064423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014495.2	+1	reviewed	p.D184E	0.969	268	0%	72	8.3%	0	-	benign(0.001)	tolerated(1)	-	NULL
WLS	79971	genome.wustl.edu	37	1	68615917	68615917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002292.2	-1	validated	p.A307V	1.000	78	0%	64	29.7%	39	35.8%	benign(0.226)	deleterious(0.01)	neutral(0.428)	HMMPfam_DUF1171
GNAT2	2780	genome.wustl.edu	37	1	110146722	110146722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005272.3	-1	reviewed	p.R242H	1.000	160	0%	108	11.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
OVGP1	5016	genome.wustl.edu	37	1	111957935	111957935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002557.3	-1	reviewed	p.W396*	0.000	62	0%	60	10%	29	3.4%	-	-	-	NULL
NPR1	4881	genome.wustl.edu	37	1	153661546	153661546	+	Silent	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000906.3	+1	validated	p.A845	0.693	53	0%	63	14.3%	3	33.3%	-	-	-	HMMSmart_SM00044
ATP1A4	480	genome.wustl.edu	37	1	160144034	160144034	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.E709*	1.000	115	0%	163	9.8%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
RCSD1	92241	genome.wustl.edu	37	1	167666442	167666442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052862.3	+1	validated	p.Q194R	1.000	103	0%	120	15%	4	0%	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	NULL
CENPL	91687	genome.wustl.edu	37	1	173776423	173776423	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127181.2	-1	validated	p.P134	0.038	127	0%	126	11.1%	5	0%	-	-	-	NULL
DHX9	1660	genome.wustl.edu	37	1	182823205	182823205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001357.4	+1	reviewed	p.H173R	1.000	218	0.5%	118	16.9%	7	28.5%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
CFHR4	10877	genome.wustl.edu	37	1	196871680	196871680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006684.2	+1	validated	p.S64L	0.000	213	0%	110	17.3%	0	-	probably_damaging(0.983)	deleterious(0.03)	deleterious(0.793)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
FAM58BP	339521	genome.wustl.edu	37	1	200182833	200182833	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105517.1	+1	provisional	p.Q48*	1.000	236	0%	328	18.6%	0	-	-	-	-	HMMSmart_CYCLIN,superfamily_Cyclin_like
GPR37L1	9283	genome.wustl.edu	37	1	202097123	202097123	+	Silent	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004767.3	+1	validated	p.P295	0.596	90	0%	107	19.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MTR	4548	genome.wustl.edu	37	1	237057765	237057765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.F1105L	1.000	172	0%	212	19.8%	1	0%	benign(0.016)	tolerated(0.67)	neutral(0.003)	HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like
OR2C3	81472	genome.wustl.edu	37	1	247694861	247694861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198074.4	-1	validated	p.A318V	0.000	70	0%	94	16%	0	-	benign(0.016)	tolerated(0.09)	neutral(0.297)	NULL
ABCG8	64241	genome.wustl.edu	37	2	44100948	44100948	+	Nonsense_Mutation	SNP	C	C	T	rs137852991		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022437.2	+1	reviewed	p.R412*	1.000	181	0%	178	23%	0	-	-	-	-	HMMPfam_ABC2_membrane
CCDC85A	114800	genome.wustl.edu	37	2	56420001	56420001	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080433.1	+1	provisional	p.P222	0.003	17	0%	24	33.3%	1	0%	-	-	-	HMMPfam_DUF2216
USP39	10713	genome.wustl.edu	37	2	85848614	85848614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455732	+1	known	p.C113Y	0.999	372	0%	398	13.1%	4	0%	-	-	-	NULL
SFTPB	6439	genome.wustl.edu	37	2	85890495	85890495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000542.3	-1	reviewed	p.V326I	0.013	51	0%	77	16.9%	1	0%	benign(0.123)	tolerated(0.06)	neutral(0.333)	HMMSmart_SapB,superfamily_Saposin_like
TMEM131	23505	genome.wustl.edu	37	2	98373635	98373635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015348.1	-1	validated	p.R1860Q	1.000	410	0%	545	22.2%	23	39.1%	benign(0.003)	deleterious(0.04)	neutral(0.349)	NULL
INPP4A	3631	genome.wustl.edu	37	2	99193553	99193553	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.H916fs	0.964	-	-	-	-	-	-	-	-	-	NULL
INPP4A	3631	genome.wustl.edu	37	2	99203950	99203950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.R938Q	1.000	175	0%	229	11.8%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYO7B	4648	genome.wustl.edu	37	2	128385960	128385960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.G1466R	0.071	20	0%	49	18.4%	3	0%	benign(0.034)	tolerated(0.53)	neutral(0.009)	NULL
RND3	390	genome.wustl.edu	37	2	151343806	151343806	+	Silent	SNP	G	G	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005168.3	-1	validated	p.V42	0.999	123	0%	199	19.1%	9	11.1%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PKP4	8502	genome.wustl.edu	37	2	159526404	159526404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.N967K	1.000	57	0%	49	20.4%	27	51.8%	benign(0.061)	tolerated(0.18)	neutral(0.060)	HMMSmart_SM00185,superfamily_ARM repeat
MYO1B	4430	genome.wustl.edu	37	2	192265524	192265524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.A811V	1.000	246	0%	358	13.1%	2	0%	probably_damaging(0.98)	tolerated(0.28)	neutral(0.456)	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
TYW5	129450	genome.wustl.edu	37	2	200797965	200797965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039693.2	-1	validated	p.Y258C	1.000	297	0%	111	18%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
FN1	2335	genome.wustl.edu	37	2	216236721	216236722	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.Q2209fs	1.000:0.985	-	-	-	-	-	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
COL6A3	1293	genome.wustl.edu	37	2	238274523	238274523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.R1886C	0.999	38	0%	56	14.3%	9	0%	unknown(0)	-	-	HMMSmart_SM00327,superfamily_vWA-like
ILKAP	80895	genome.wustl.edu	37	2	239103464	239103464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030768.2	-1	reviewed	p.A35T	1.000	164	0%	163	19.6%	11	18.1%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
ANKMY1	51281	genome.wustl.edu	37	2	241463372	241463372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016552.2	-1	validated	p.A499T	0.000	44	0%	66	12.1%	5	40%	benign(0.126)	deleterious(0)	neutral(0.455)	superfamily_Ankyrin repeat
SETD5	55209	genome.wustl.edu	37	3	9485042	9485042	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399686	+1	known	p.V44I	0.996	151	0%	148	22.3%	7	28.5%	-	-	-	HMMPfam_SET,superfamily_SET domain
KCNH8	131096	genome.wustl.edu	37	3	19554677	19554677	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144633.2	+1	reviewed	p.S765	0.998	143	0%	49	14.3%	0	-	-	-	-	NULL
ZNF385D	79750	genome.wustl.edu	37	3	21706422	21706422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024697.2	-1	validated	p.L41I	1.000	185	0%	67	16.4%	1	0%	probably_damaging(0.985)	deleterious(0.03)	deleterious(0.796)	NULL
HYAL2	8692	genome.wustl.edu	37	3	50357533	50357533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003773.4	-1	reviewed	p.A130T	1.000	60	0%	97	25.8%	32	6.2%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases
PBRM1	55193	genome.wustl.edu	37	3	52668640	52668640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018165.4	-1	validated	p.P395S	1.000	532	0%	304	11.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
DCBLD2	131566	genome.wustl.edu	37	3	98518416	98518416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080927.3	-1	validated	p.P710T	0.005	227	0%	111	9.9%	3	0%	benign(0.418)	deleterious(0.03)	deleterious(0.500)	NULL
ADCY5	111	genome.wustl.edu	37	3	123036923	123036923	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.A766	0.004	161	0%	209	18.2%	1	0%	-	-	-	NULL
HEG1	57493	genome.wustl.edu	37	3	124732133	124732133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020733.1	-1	validated	p.T764A	0.000	410	0%	485	17.3%	1	0%	benign(0.01)	tolerated(0.14)	neutral(0.250)	NULL
ZNF148	7707	genome.wustl.edu	37	3	124996618	124996618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.R207C	1.000	146	0%	83	26.5%	2	0%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
COL6A6	131873	genome.wustl.edu	37	3	130293060	130293060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102608.1	+1	provisional	p.G1080S	1.000	110	0%	75	25.3%	0	-	probably_damaging(0.954)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
BFSP2	8419	genome.wustl.edu	37	3	133191302	133191302	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003571.2	+1	reviewed	p.A379	0.000	28	0%	44	22.7%	0	-	-	-	-	HMMPfam_Filament
ESYT3	83850	genome.wustl.edu	37	3	138191208	138191208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031913.3	+1	validated	p.L582M	0.690	59	0%	65	15.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IGSF10	285313	genome.wustl.edu	37	3	151171413	151171413	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178822.4	-1	validated	p.V158	0.998	149	0%	111	20.7%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
DHX36	170506	genome.wustl.edu	37	3	154021159	154021159	+	Silent	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020865.2	-1	validated	p.P392	0.878	243	0%	81	28.4%	2	0%	-	-	-	HMMSmart_DEXDc,superfamily_SSF52540
VWA5B2	90113	genome.wustl.edu	37	3	183957283	183957283	+	Silent	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138345.1	+1	provisional	p.G768	0.000	41	0%	78	12.8%	0	-	-	-	-	NULL
SORCS2	57537	genome.wustl.edu	37	4	7533275	7533275	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507866	+1	known	p.V156I	0.010	101	0%	171	19.9%	1	0%	-	-	-	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase
LIMCH1	22998	genome.wustl.edu	37	4	41648508	41648509	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014988.2	+1	validated	p.E425fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
GABRB1	2560	genome.wustl.edu	37	4	47427824	47427824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000812.3	+1	reviewed	p.R405H	1.000	62	0%	46	13%	0	-	probably_damaging(0.975)	tolerated(0.07)	deleterious(0.736)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
AGPAT9	84803	genome.wustl.edu	37	4	84502844	84502844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032717.3	+1	validated	p.T113I	1.000	280	0%	223	24.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC3	8916	genome.wustl.edu	37	4	89575229	89575229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014606.1	+1	provisional	p.T241M	0.951	202	0%	100	19%	1	0%	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
SLC9B2	133308	genome.wustl.edu	37	4	103947719	103947719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503103	-1	known	p.S372G	1.000	210	0%	79	20.3%	2	50%	possibly_damaging(0.873)	deleterious(0.01)	deleterious(0.745)	NULL
EDNRA	1909	genome.wustl.edu	37	4	148453771	148453771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001957.3	+1	reviewed	p.A221V	1.000	236	0%	264	13.3%	7	0%	benign(0.333)	deleterious(0.04)	neutral(0.453)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FBXW7	55294	genome.wustl.edu	37	4	153249510	153249510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.G423V	1.000	204	0%	42	16.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DCHS2	54798	genome.wustl.edu	37	4	155410976	155410976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142552.1	-1	validated	p.A511V	1.000	47	0%	85	21.2%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FAT1	2195	genome.wustl.edu	37	4	187524630	187524630	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.Q3684*	1.000	139	0%	165	13.9%	7	0%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FAT1	2195	genome.wustl.edu	37	4	187534400	187534400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.A3109V	0.996	172	0%	218	11.9%	0	-	possibly_damaging(0.779)	deleterious(0.01)	deleterious(0.697)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CCDC127	133957	genome.wustl.edu	37	5	205948	205948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145265.2	-1	provisional	p.R83C	0.996	170	0.6%	290	22.4%	13	15.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FASTKD3	79072	genome.wustl.edu	37	5	7861280	7861280	+	Silent	SNP	G	G	A	rs138245860	by1000genomes	TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024091.2	-1	validated	p.L622	0.981	170	0%	153	18.3%	9	11.1%	-	-	-	HMMPfam_RAP
TRIO	7204	genome.wustl.edu	37	5	14462947	14462947	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007118.2	+1	validated	p.G1860	0.353	52	0%	68	14.7%	2	0%	-	-	-	NULL
SLC45A2	51151	genome.wustl.edu	37	5	33951772	33951772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016180.3	-1	reviewed	p.R348H	0.465	118	0%	70	18.6%	0	-	benign(0.005)	tolerated(0.6)	neutral(0.004)	superfamily_MFS general substrate transporter
NIPBL	25836	genome.wustl.edu	37	5	37063925	37063927	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.E2635in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DHX29	54505	genome.wustl.edu	37	5	54572230	54572230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019030.2	-1	validated	p.F764Y	1.000	163	0%	69	15.9%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMSmart_DEXDc,superfamily_SSF52540
PIK3R1	5295	genome.wustl.edu	37	5	67590478	67590478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.R514C	1.000	153	0%	115	15.7%	6	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000245358	0	genome.wustl.edu	37	5	114513328	114513328	+	RNA	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502182	+1	known	NULL	0.000	49	0%	67	26.9%	0	-	-	-	-	-
FNIP1	96459	genome.wustl.edu	37	5	131013543	131013543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133372.2	-1	validated	p.A458T	1.000	160	0%	105	17.1%	2	50%	possibly_damaging(0.915)	tolerated(0.1)	deleterious(0.653)	NULL
TGFBI	7045	genome.wustl.edu	37	5	135379745	135379746	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000358.2	+1	reviewed	e3-1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
PCDHB6	56130	genome.wustl.edu	37	5	140531053	140531053	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018939.2	+1	reviewed	p.G405	0.000	242	0%	360	16.7%	5	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB16	57717	genome.wustl.edu	37	5	140562748	140562748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.E205G	0.353	106	0%	159	20.8%	1	0%	benign(0.141)	deleterious(0.01)	neutral(0.418)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB12	56124	genome.wustl.edu	37	5	140590068	140590068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.R530H	0.000	76	0%	114	12.3%	0	-	benign(0.001)	tolerated(0.34)	neutral(0.023)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA3	56112	genome.wustl.edu	37	5	140723685	140723685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.G29S	0.990	43	0%	76	23.7%	0	-	benign(0.019)	tolerated(0.11)	neutral(0.273)	HMMSmart_SM00112,HMMPfam_Cadherin_2
PCDHGB2	56103	genome.wustl.edu	37	5	140739984	140739984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.Q94H	1.000	67	0%	84	14.3%	0	-	benign(0.027)	deleterious(0)	neutral(0.446)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140772869	140772869	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.G163	0.008	53	0%	120	15.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARSI	340075	genome.wustl.edu	37	5	149677385	149677385	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012301.2	-1	validated	p.L368	0.887	15	0%	23	34.8%	0	-	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
FAT2	2196	genome.wustl.edu	37	5	150905454	150905454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.P3461T	1.000	58	0%	103	13.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
GEMIN5	25929	genome.wustl.edu	37	5	154291388	154291388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.A689V	0.002	88	0%	105	16.2%	2	50%	benign(0)	tolerated(0.7)	neutral(0.002)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
WWC1	23286	genome.wustl.edu	37	5	167812373	167812373	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.Q129	1.000	98	0%	89	12.4%	1	100%	-	-	-	NULL
FAM50B	26240	genome.wustl.edu	37	6	3850441	3850441	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012135.1	+1	provisional	p.D132	0.000	13	0%	35	25.7%	3	0%	-	-	-	HMMPfam_XAP5
HIVEP1	3096	genome.wustl.edu	37	6	12163908	12163908	+	Silent	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.V2457	0.235	117	0%	90	11.1%	7	14.2%	-	-	-	NULL
COX6A1P2	285849	genome.wustl.edu	37	6	37012685	37012685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423336	+1	known	p.R17H	0.022	59	0%	73	12.3%	5	0%	benign(0.139)	tolerated(0.08)	neutral(0.312)	NULL
AARS2	57505	genome.wustl.edu	37	6	44271961	44271961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020745.2	-1	validated	p.S655Y	1.000	73	0%	106	16%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thr/Ala-tRNA-synth_IIc_edit
ENPP5	59084	genome.wustl.edu	37	6	46135395	46135395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021572.4	-1	validated	p.P202L	0.991	113	0%	99	21.2%	0	-	benign(0.011)	tolerated(0.1)	neutral(0.287)	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
MRAP2	112609	genome.wustl.edu	37	6	84798856	84798856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138409.2	+1	validated	p.S92P	1.000	143	0%	110	23.6%	5	80%	benign(0)	deleterious(0.05)	neutral(0.345)	NULL
MDN1	23195	genome.wustl.edu	37	6	90385231	90385231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.R4238Q	0.189	66	0%	95	20%	0	-	probably_damaging(0.974)	tolerated(0.42)	neutral(0.430)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97729125	97729125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.F93S	1.000	268	0%	310	23.2%	1	0%	possibly_damaging(0.638)	deleterious(0)	deleterious(0.668)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151626887	151626887	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.L56	0.183	83	0%	77	13%	2	0%	-	-	-	NULL
MAD1L1	8379	genome.wustl.edu	37	7	2020125	2020125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013836.1	-1	reviewed	p.S490G	0.491	19	0%	64	20.3%	20	45%	possibly_damaging(0.91)	deleterious(0.03)	deleterious(0.727)	HMMPfam_MAD
TNRC18	84629	genome.wustl.edu	37	7	5359978	5359978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080495.2	-1	provisional	p.R2239H	1.000	92	0%	145	18.6%	15	6.6%	unknown(0)	-	-	NULL
ETV1	2115	genome.wustl.edu	37	7	13949277	13949277	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004956.4	-1	validated	p.V307D	1.000	130	0%	70	17.1%	1	0%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMPfam_ETS_PEA3_N
SNX13	23161	genome.wustl.edu	37	7	17915346	17915349	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015132.4	-1	reviewed	p.L169fs	0.976:0.151:0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PXA,HMMSmart_SM00313
GHRHR	2692	genome.wustl.edu	37	7	31013716	31013716	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000823.3	+1	reviewed	p.S238	0.000	64	0%	107	15.9%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_SSF81321
POU6F2	11281	genome.wustl.edu	37	7	39379288	39379290	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007252.3	+1	reviewed	p.Q190in_frame_del	0.172:0.153:0.157	-	-	-	-	-	-	-	-	-	NULL
POM121	9883	genome.wustl.edu	37	7	72400577	72400577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172020.1	+1	reviewed	p.Y136	0.000	252	0%	264	20.1%	3	0%	-	-	-	NULL
CNTNAP2	26047	genome.wustl.edu	37	7	147844632	147844632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014141.5	+1	reviewed	p.E868D	1.000	136	0%	140	20%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
KRBA1	84626	genome.wustl.edu	37	7	149423043	149423043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000255992	+1	known	p.P456S	0.003	51	0%	90	18.9%	7	14.2%	unknown(0)	tolerated(0.08)	-	NULL
MLL3	58508	genome.wustl.edu	37	7	151851512	151851512	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000360104	-1	known	p.*1554R	0.042	119	0%	80	15%	4	75%	-	-	-	NULL
SLC35G5	83650	genome.wustl.edu	37	8	11189592	11189592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054028.1	+1	reviewed	p.R326Q	0.789	174	0%	262	14.9%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_SSF103481
SULF1	23213	genome.wustl.edu	37	8	70536204	70536204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128204.1	+1	validated	p.R541Q	1.000	112	0%	108	25%	17	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_Alkaline_phosphatase_core
NCOA2	10499	genome.wustl.edu	37	8	71060571	71060571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006540.2	-1	validated	p.A848T	1.000	250	0%	287	13.9%	4	25%	benign(0.013)	tolerated(0.51)	neutral(0.009)	NULL
LY96	23643	genome.wustl.edu	37	8	74922301	74922301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015364.3	+1	validated	p.R90C	0.786	243	0%	203	10.3%	12	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_E1_DerP2_DerF2,HMMSmart_SM00737
CNGB3	54714	genome.wustl.edu	37	8	87680362	87680362	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019098.4	-1	reviewed	p.S176	0.000	276	0%	152	16.4%	0	-	-	-	-	NULL
TMEM67	91147	genome.wustl.edu	37	8	94767175	94767175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153704.5	+1	reviewed	p.M11I	1.000	69	0%	87	21.8%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
CDH17	1015	genome.wustl.edu	37	8	95142931	95142931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144663.1	-1	reviewed	p.R774Q	0.825	166	0%	63	15.9%	0	-	benign(0.011)	tolerated(0.58)	neutral(0.005)	superfamily_Cadherin-like
TRPS1	7227	genome.wustl.edu	37	8	116631584	116631584	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014112.2	-1	reviewed	p.N247	0.886	180	0%	94	20.2%	2	50%	-	-	-	HMMSmart_ZnF_C2H2
UTP23	84294	genome.wustl.edu	37	8	117783830	117783830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032334.2	+1	validated	p.V167I	1.000	100	0%	94	21.3%	4	0%	benign(0.118)	tolerated(0.19)	neutral(0.059)	NULL
KLHL38	340359	genome.wustl.edu	37	8	124664965	124664965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081675.2	-1	validated	p.R68W	1.000	77	0%	123	22.8%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
COL22A1	169044	genome.wustl.edu	37	8	139895356	139895356	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.S20R	0.002	18	0%	12	50%	0	-	unknown(0)	deleterious(0)	-	NULL
EIF2C2	27161	genome.wustl.edu	37	8	141542164	141542164	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012154.3	-1	reviewed	p.C846Y	1.000	168	0.6%	264	14.8%	12	16.6%	-	-	-	NULL
FLJ43860	389690	genome.wustl.edu	37	8	142445249	142445249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.R1219H	1.000	29	0%	38	28.9%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_ARM repeat
ANKRD18B	441459	genome.wustl.edu	37	9	33555748	33555748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.I820L	0.221	181	0%	49	22.4%	0	-	benign(0.012)	tolerated(0.23)	neutral(0.042)	NULL
FBXO10	26267	genome.wustl.edu	37	9	37525146	37525146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.R577H	1.000	76	0%	145	24.1%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like
TLE4	7091	genome.wustl.edu	37	9	82323614	82323614	+	Silent	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000496114	+1	known	p.L183I	1.000	47	0%	72	12.5%	1	0%	-	-	-	NULL
SVEP1	79987	genome.wustl.edu	37	9	113139637	113139637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.R3473Q	1.000	89	0%	45	33.3%	29	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin
FKBP15	23307	genome.wustl.edu	37	9	115964905	115964905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015258.1	-1	validated	p.R135Q	1.000	113	0%	96	12.5%	4	0%	benign(0.09)	tolerated(0.71)	neutral(0.008)	superfamily_FKBP-like
PAPPA	5069	genome.wustl.edu	37	9	119033682	119033682	+	Silent	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002581.3	+1	reviewed	p.S980	1.000	233	0%	287	13.2%	0	-	-	-	-	superfamily_SSF55486
MEGF9	1955	genome.wustl.edu	37	9	123421695	123421695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080497.1	-1	provisional	p.C291R	0.990	76	0%	47	21.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin
TOR2A	27433	genome.wustl.edu	37	9	130495615	130495615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130459.2	-1	validated	p.E214D	0.003	35	0%	56	23.2%	3	33.3%	benign(0.068)	deleterious(0)	neutral(0.449)	NULL
ODF2	4957	genome.wustl.edu	37	9	131262511	131262511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002540.3	+1	reviewed	p.R799C	1.000	162	0%	221	16.7%	26	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
NUP214	8021	genome.wustl.edu	37	9	134038531	134038531	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005085.2	+1	reviewed	p.S898	0.000	145	0.7%	161	16.8%	6	16.6%	-	-	-	NULL
NEBL	10529	genome.wustl.edu	37	10	21158716	21158716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006393.2	-1	reviewed	p.R179*	1.000	233	0%	85	14.1%	0	-	-	-	-	HMMSmart_SM00227
BMI1	648	genome.wustl.edu	37	10	22618256	22618256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005180.6	+1	validated	p.D256N	1.000	223	0%	279	21.9%	16	12.5%	possibly_damaging(0.944)	deleterious(0.02)	deleterious(0.772)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874387	24874387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.V1611M	0.884	183	0%	89	27%	8	50%	benign(0.024)	deleterious(0)	neutral(0.446)	NULL
MAPK8	5599	genome.wustl.edu	37	10	49628313	49628313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139047.1	+1	reviewed	p.R189H	1.000	198	0%	65	15.4%	6	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WDFY4	57705	genome.wustl.edu	37	10	50028299	50028299	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312002	+1	known	p.P933S	0.000	55	0%	97	18.6%	1	100%	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55568664	55568664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142769.1	-1	reviewed	p.D1721H	0.000	473	0%	262	19.8%	0	-	unknown(0)	deleterious(0)	-	NULL
PBLD	64081	genome.wustl.edu	37	10	70043987	70043987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022129.3	-1	validated	p.V272I	0.981	205	0%	299	11%	2	0%	benign(0.429)	tolerated(0.25)	neutral(0.177)	HMMPfam_PhzC-PhzF,superfamily_SSF54506
CDH23	64072	genome.wustl.edu	37	10	73563090	73563090	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.T2595	0.984	58	0%	103	16.5%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PTEN	5728	genome.wustl.edu	37	10	89717737	89717739	+	In_Frame_Del	DEL	AGT	AGT	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	AGT	AGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.V255in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
SEC31B	25956	genome.wustl.edu	37	10	102267211	102267211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.S251	0.082	107	0%	82	11%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
UROS	7390	genome.wustl.edu	37	10	127477535	127477535	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000375.2	-1	reviewed	p.A234T	0.035	18	0%	13	38.5%	37	2.7%	benign(0.012)	tolerated(0.24)	neutral(0.038)	HMMPfam_HEM4,superfamily_Uroporphyrinogen III synthase (U3S HemD)
BRSK2	9024	genome.wustl.edu	37	11	1477726	1477726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003957.2	+1	validated	p.G606A	1.000	46	0%	70	20%	0	-	benign(0.262)	tolerated(0.59)	neutral(0.032)	NULL
TPP1	1200	genome.wustl.edu	37	11	6637243	6637243	+	Missense_Mutation	SNP	C	C	T	rs190013230	by1000genomes	TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000391.3	-1	reviewed	p.A380T	1.000	222	0%	261	20.7%	21	4.7%	possibly_damaging(0.479)	tolerated(0.57)	neutral(0.165)	superfamily_Subtilisin-like
SBF2	81846	genome.wustl.edu	37	11	10022540	10022540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.Q261R	1.000	123	0%	136	24.3%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	HMMPfam_DENN,HMMSmart_SM00799
USP47	55031	genome.wustl.edu	37	11	11969599	11969599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017944.3	+1	validated	p.A999T	1.000	265	0%	81	13.6%	14	14.2%	possibly_damaging(0.78)	tolerated(0.64)	neutral(0.294)	NULL
PTH	5741	genome.wustl.edu	37	11	13514329	13514329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000315.2	-1	reviewed	p.G25V	0.996	170	0%	113	18.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Parathyroid
IGSF22	283284	genome.wustl.edu	37	11	18733914	18733914	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513874	-1	known	p.Q705*	0.960	107	0%	152	10.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
LOC100289009	100289009	genome.wustl.edu	37	11	32118738	32118738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343075.1	-1	model	p.S89G	0.007	157	0%	155	25.8%	34	35.2%	-	-	-	NULL
CAT	847	genome.wustl.edu	37	11	34477668	34477668	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001752.3	+1	reviewed	p.Y274	1.000	166	0%	142	22.5%	24	25%	-	-	-	superfamily_Catalase_N,HMMPfam_Catalase
CHRM4	1132	genome.wustl.edu	37	11	46406976	46406976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000741.2	-1	reviewed	p.A378T	1.000	120	0%	163	11%	0	-	possibly_damaging(0.61)	tolerated(0.22)	neutral(0.254)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FNBP4	23360	genome.wustl.edu	37	11	47739011	47739011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015308.2	-1	validated	p.A1006V	1.000	180	0%	263	15.6%	13	15.3%	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	NULL
OR5B21	219968	genome.wustl.edu	37	11	58274980	58274980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005218.1	-1	provisional	p.A200V	0.002	139	0%	43	16.3%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_7tm_1,superfamily_SSF81321
NXF1	10482	genome.wustl.edu	37	11	62571027	62571027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006362.4	-1	reviewed	p.R78L	0.993	129	0%	171	26.9%	13	30.7%	probably_damaging(0.978)	deleterious(0.03)	deleterious(0.785)	NULL
DNAJC4	3338	genome.wustl.edu	37	11	64000307	64000307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005528.3	+1	validated	p.A166V	0.320	90	0%	104	19.2%	128	29.6%	benign(0.008)	tolerated(0.13)	neutral(0.253)	NULL
PLCB3	5331	genome.wustl.edu	37	11	64022785	64022785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000932.2	+1	reviewed	p.A156V	1.000	111	0%	150	14.7%	8	37.5%	probably_damaging(0.978)	tolerated(0.67)	neutral(0.423)	NULL
SYT12	91683	genome.wustl.edu	37	11	66813260	66813260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177963.3	+1	reviewed	p.S335N	1.000	80	0%	179	16.2%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
PRKRIR	5612	genome.wustl.edu	37	11	76062696	76062696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004705.2	-1	provisional	p.L500I	1.000	67	0%	25	16%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C11orf30	56946	genome.wustl.edu	37	11	76183647	76183647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020193.3	+1	validated	p.P291A	1.000	341	0%	191	20.9%	1	0%	unknown(0)	deleterious(0.02)	-	NULL
USP28	57646	genome.wustl.edu	37	11	113705058	113705058	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020886.2	-1	validated	e6-1	1.000	171	0%	129	11.6%	0	-	-	-	-	-
MLL	4297	genome.wustl.edu	37	11	118359428	118359428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.R1478C	1.000	282	0%	343	18.7%	2	50%	probably_damaging(1)	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
SORL1	6653	genome.wustl.edu	37	11	121437742	121437742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003105.4	+1	reviewed	p.S1048N	1.000	149	0%	86	17.4%	3	0%	benign(0.116)	tolerated(0.22)	neutral(0.051)	NULL
ROBO3	64221	genome.wustl.edu	37	11	124742859	124742859	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022370.3	+1	reviewed	p.L470	1.000	65	0%	101	13.9%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DUSP16	80824	genome.wustl.edu	37	12	12630252	12630252	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030640.2	-1	reviewed	p.R505*	0.501	122	0%	120	22.5%	5	0%	-	-	-	NULL
PTPRO	5800	genome.wustl.edu	37	12	15677817	15677817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030667.1	+1	reviewed	p.G654E	1.000	218	0%	86	11.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00060,superfamily_Fibronectin type III
PLEKHA5	54477	genome.wustl.edu	37	12	19427702	19427702	+	Silent	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019012.3	+1	validated	p.P360	0.000	150	0%	72	23.6%	5	20%	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12D	1.000	274	0%	295	19.7%	2	50%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RARG	5916	genome.wustl.edu	37	12	53609077	53609077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000966.4	-1	validated	p.A159T	1.000	215	0%	319	17.2%	5	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_zf-C4,superfamily_Nuclear receptor ligand-binding domain
OR6C70	390327	genome.wustl.edu	37	12	55863530	55863530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005499.1	-1	provisional	p.M131I	0.000	130	0%	54	11.1%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_1,superfamily_SSF81321
ITGA7	3679	genome.wustl.edu	37	12	56090722	56090722	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.Q570	1.000	84	0%	119	21.8%	5	20%	-	-	-	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
BAZ2A	11176	genome.wustl.edu	37	12	56999107	56999107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.L835P	1.000	109	0%	117	19.7%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81734915	81734915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.P779S	1.000	526	0%	118	14.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GALNT4	8693	genome.wustl.edu	37	12	89917558	89917558	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003774.3	-1	reviewed	p.D257H	1.000	125	0%	167	19.2%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GNPTAB	79158	genome.wustl.edu	37	12	102183790	102183790	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024312.4	-1	reviewed	p.N83	0.988	386	0%	261	19.2%	3	33.3%	-	-	-	NULL
ANKRD13A	88455	genome.wustl.edu	37	12	110467366	110467366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033121.1	+1	validated	p.R387Q	1.000	187	0%	209	31.1%	2	50%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
NOS1	4842	genome.wustl.edu	37	12	117662863	117662863	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	p.R1262*	1.000	164	0%	240	21.7%	0	-	-	-	-	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
ZCCHC8	55596	genome.wustl.edu	37	12	122964736	122964736	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017612.2	-1	validated	e11+1	1.000	337	0%	245	24.5%	1	100%	-	-	-	-
TMEM132C	92293	genome.wustl.edu	37	12	129189910	129189910	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136103.2	+1	provisional	p.F687	0.976	30	0%	38	13.2%	0	-	-	-	-	NULL
SFSWAP	6433	genome.wustl.edu	37	12	132237817	132237817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004592.2	+1	reviewed	p.T411P	0.016	138	0.7%	230	15.7%	9	22.2%	possibly_damaging(0.563)	tolerated(0.23)	neutral(0.234)	NULL
LNX2	222484	genome.wustl.edu	37	13	28143271	28143271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153371.3	-1	validated	p.G184C	0.985	167	0%	66	10.6%	3	0%	possibly_damaging(0.888)	deleterious(0.01)	deleterious(0.753)	NULL
PCDH17	27253	genome.wustl.edu	37	13	58208366	58208366	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040429.2	+1	reviewed	p.H562	1.000	19	0%	22	18.2%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
MYCBP2	23077	genome.wustl.edu	37	13	77780922	77780922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015057.4	-1	validated	p.A1114V	1.000	136	0%	74	10.8%	1	0%	probably_damaging(0.99)	tolerated(1)	neutral(0.442)	NULL
SLITRK6	84189	genome.wustl.edu	37	13	86368865	86368865	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032229.2	-1	validated	p.T593	0.056	231	0%	50	12%	0	-	-	-	-	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88330342	88330342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015567.1	+1	validated	p.Q900R	1.000	63	0%	89	14.6%	0	-	possibly_damaging(0.528)	tolerated(0.09)	deleterious(0.474)	NULL
FARP1	10160	genome.wustl.edu	37	13	99098961	99098961	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.S982	0.001	161	0%	255	11.8%	73	16.4%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
TPP2	7174	genome.wustl.edu	37	13	103297277	103297277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.N771D	1.000	171	1.2%	50	12%	3	33.3%	benign(0.025)	tolerated(0.19)	neutral(0.051)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103386376	103386376	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.P5405	0.003	135	0%	48	20.8%	0	-	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109496821	109496821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.G388S	0.000	132	0%	52	13.5%	0	-	benign(0.002)	tolerated(0.7)	neutral(0.002)	superfamily_P-loop containing nucleoside triphosphate hydrolases
APEX1	328	genome.wustl.edu	37	14	20925372	20925372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001641.2	+1	reviewed	p.R221H	1.000	171	0%	194	26.8%	219	36.5%	possibly_damaging(0.852)	deleterious(0)	deleterious(0.772)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like
SLC7A7	9056	genome.wustl.edu	37	14	23243658	23243658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126105.1	-1	reviewed	p.Y384H	1.000	212	0%	204	19.1%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HAUS4	54930	genome.wustl.edu	37	14	23419597	23419597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017815.2	-1	reviewed	p.R163Q	0.771	238	0%	256	11.3%	13	0%	benign(0.005)	tolerated(0.15)	neutral(0.241)	NULL
MYH7	4625	genome.wustl.edu	37	14	23896022	23896022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.V670I	1.000	251	0%	416	19.7%	0	-	possibly_damaging(0.88)	tolerated(0.23)	neutral(0.385)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TGM1	7051	genome.wustl.edu	37	14	24731013	24731013	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000359.2	-1	reviewed	p.D132	0.566	74	0%	155	23.9%	0	-	-	-	-	HMMPfam_Transglut_N,superfamily_Ig_E-set
NEK9	91754	genome.wustl.edu	37	14	75563839	75563839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033116.4	-1	validated	p.L713M	1.000	111	0%	96	26%	4	25%	possibly_damaging(0.933)	deleterious(0)	deleterious(0.824)	superfamily_RCC1/BLIP-II
NRXN3	9369	genome.wustl.edu	37	14	79434564	79434565	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004796.4	+1	reviewed	p.L635fs	1.000:0.572	-	-	-	-	-	-	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
IGHA2	3494	genome.wustl.edu	37	14	106054597	106054597	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390539	-1	known	p.Q46*	0.000	150	0%	197	13.2%	87	0%	-	-	-	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
ENSG00000206149	0	genome.wustl.edu	37	15	28886371	28886371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000382946	+1	known	p.L406P	1.000	201	0%	255	14.5%	2	0%	-	-	-	NULL
APBA2	321	genome.wustl.edu	37	15	29346090	29346090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005503.3	+1	reviewed	p.M1I	1.000	27	0%	33	30.3%	6	50%	possibly_damaging(0.866)	deleterious(0)	deleterious(0.780)	NULL
OIP5	11339	genome.wustl.edu	37	15	41602025	41602025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007280.1	-1	provisional	p.T206M	0.003	199	0%	177	23.7%	7	28.5%	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
WDR76	79968	genome.wustl.edu	37	15	44120485	44120485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024908.3	+1	validated	p.T128M	0.000	151	0%	192	21.9%	2	50%	possibly_damaging(0.754)	deleterious(0.02)	deleterious(0.661)	NULL
MYO5C	55930	genome.wustl.edu	37	15	52548900	52548900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018728.2	-1	validated	p.V444A	1.000	266	0%	292	16.8%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TLE3	7090	genome.wustl.edu	37	15	70347577	70347577	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005078.2	-1	validated	p.D466	0.761	54	0%	79	19%	5	40%	-	-	-	superfamily_WD40 repeat-like
LOC100287646	100287646	genome.wustl.edu	37	15	74315256	74315256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343353.1	-1	model	p.A211T	0.003	25	0%	32	18.8%	17	35.2%	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90349770	90349770	+	Silent	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.G15	0.121	119	0%	211	21.3%	0	-	-	-	-	NULL
MSLNL	401827	genome.wustl.edu	37	16	823013	823013	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025190.1	-1	provisional	p.L724	0.004	107	0%	135	20%	0	-	-	-	-	HMMPfam_Mesothelin
MAPK8IP3	23162	genome.wustl.edu	37	16	1812705	1812707	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015133.3	+1	reviewed	p.K569in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PKD1	5310	genome.wustl.edu	37	16	2140508	2140508	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009944.2	-1	reviewed	p.L4074	0.980	24	0%	29	20.7%	24	25%	-	-	-	HMMPfam_PKD_channel
TBC1D24	57465	genome.wustl.edu	37	16	2546750	2546750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020705.1	+1	provisional	p.V201M	0.758	78	0%	114	11.4%	0	-	possibly_damaging(0.845)	tolerated(0.07)	deleterious(0.643)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
ZNF263	10127	genome.wustl.edu	37	16	3340137	3340137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005741.4	+1	validated	p.R544T	1.000	114	0%	116	21.6%	8	25%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
SEPT12	124404	genome.wustl.edu	37	16	4828125	4828125	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144605.3	-1	validated	p.A279	0.182	165	0%	240	10%	0	-	-	-	-	HMMPfam_Septin
USP31	57478	genome.wustl.edu	37	16	23102000	23102000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020718.3	-1	validated	p.D454N	1.000	234	0%	152	9.9%	1	0%	benign(0.081)	tolerated(0.21)	neutral(0.050)	HMMPfam_UCH,superfamily_Cysteine proteinases
IL27	246778	genome.wustl.edu	37	16	28511198	28511200	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145659.3	-1	reviewed	p.E172in_frame_del	0.049:0.009:0.000	-	-	-	-	-	-	-	-	-	NULL
NOD2	64127	genome.wustl.edu	37	16	50745323	50745323	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022162.1	+1	reviewed	p.L501	0.242	17	0%	31	19.4%	0	-	-	-	-	NULL
C16orf86	388284	genome.wustl.edu	37	16	67702350	67702350	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012984.2	+1	validated	p.G267	0.956	35	0%	89	22.5%	2	0%	-	-	-	NULL
VAC14	55697	genome.wustl.edu	37	16	70765439	70765439	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018052.3	-1	validated	p.S540	0.387	198	0%	305	16.7%	16	18.7%	-	-	-	superfamily_ARM-type_fold
COX4I1	1327	genome.wustl.edu	37	16	85834875	85834875	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001861.2	+1	reviewed	p.R22*	0.083	338	0%	528	19.1%	490	19.7%	-	-	-	NULL
BANP	54971	genome.wustl.edu	37	16	88071599	88071599	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_079837.2	+1	reviewed	p.H392	0.999	142	0%	253	13.8%	4	100%	-	-	-	NULL
GALNS	2588	genome.wustl.edu	37	16	88902187	88902187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000512.4	-1	reviewed	p.T235M	1.000	94	0%	181	23.8%	13	7.6%	probably_damaging(0.987)	tolerated(0.1)	deleterious(0.723)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
PITPNM3	83394	genome.wustl.edu	37	17	6361007	6361007	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031220.3	-1	reviewed	p.T842	0.176	58	0%	84	20.2%	0	-	-	-	-	HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like
DLG4	1742	genome.wustl.edu	37	17	7120454	7120455	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128827.1	-1	reviewed	p.C5fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
COX10	1352	genome.wustl.edu	37	17	14005478	14005478	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001303.3	+1	reviewed	p.P181	0.144	191	0%	69	33.3%	2	0%	-	-	-	HMMPfam_UbiA
NCOR1	9611	genome.wustl.edu	37	17	15973556	15973556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006311.2	-1	reviewed	p.T1479I	0.101	248	0%	231	17.3%	6	0%	benign(0.032)	deleterious(0.05)	neutral(0.347)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18035800	18035800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.E1414K	1.000	45	0%	69	18.8%	0	-	probably_damaging(0.974)	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NLK	51701	genome.wustl.edu	37	17	26495519	26495519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016231.4	+1	validated	p.R295C	1.000	224	0%	143	14%	1	100%	benign(0.005)	tolerated(0.11)	neutral(0.272)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000167524	0	genome.wustl.edu	37	17	26940469	26940469	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301037	-1	known	p.Q105*	1.000	127	0%	145	18.6%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
KRT33A	3883	genome.wustl.edu	37	17	39503110	39503110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004138.2	-1	reviewed	p.A288T	1.000	231	0%	355	19.7%	0	-	benign(0.31)	deleterious(0.04)	neutral(0.446)	HMMPfam_Filament
CNTNAP1	8506	genome.wustl.edu	37	17	40845484	40845484	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003632.2	+1	reviewed	p.C974	0.978	92	0%	151	17.9%	2	0%	-	-	-	HMMPfam_EGF,superfamily_ConA_like_lec_gl
GFAP	2670	genome.wustl.edu	37	17	42987844	42987844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000376990	-1	known	p.R437H	0.000	94	0%	88	19.3%	0	-	-	-	-	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43473605	43473605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199282.2	-1	validated	p.T399I	1.000	52	0%	77	15.6%	4	50%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PDK2	5164	genome.wustl.edu	37	17	48174837	48174837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002611.3	+1	provisional	p.L57M	1.000	103	0%	196	19.9%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
TOB1	10140	genome.wustl.edu	37	17	48940553	48940556	+	Frame_Shift_Del	DEL	AAAT	AAAT	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	AAAT	AAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005749.2	-1	reviewed	p.I275fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
EPX	8288	genome.wustl.edu	37	17	56270742	56270742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.R61W	0.458	61	0%	106	20.8%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	NULL
TBX2	6909	genome.wustl.edu	37	17	59479160	59479160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005994.3	+1	validated	p.R171C	1.000	42	0%	53	26.4%	9	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
GAA	2548	genome.wustl.edu	37	17	78092530	78092530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000152.3	+1	reviewed	p.V909M	0.991	94	0%	132	22.7%	68	32.3%	possibly_damaging(0.817)	tolerated(0.11)	deleterious(0.581)	NULL
FSCN2	25794	genome.wustl.edu	37	17	79502118	79502118	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077182.2	+1	reviewed	p.H289	0.587	98	0%	173	24.3%	3	66.6%	-	-	-	superfamily_Actin-crosslinking proteins,HMMPfam_Fascin
UTS2R	2837	genome.wustl.edu	37	17	80332468	80332468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018949.1	+1	provisional	p.V90M	1.000	33	0%	46	10.9%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PTPRM	5797	genome.wustl.edu	37	18	8376550	8376550	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105244.1	+1	reviewed	p.C1139	0.882	146	0%	216	11.6%	13	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
GREB1L	80000	genome.wustl.edu	37	18	19098039	19098039	+	Silent	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142966.1	+1	provisional	p.C1772	0.959	224	0%	135	18.5%	0	-	-	-	-	NULL
POLI	11201	genome.wustl.edu	37	18	51813698	51813698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007195.2	+1	validated	p.R372H	1.000	208	0%	41	34.1%	5	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain
NFATC1	4772	genome.wustl.edu	37	18	77170517	77170517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.P68L	0.012	32	0%	51	11.8%	3	0%	benign(0.001)	tolerated(0.71)	neutral(0.002)	NULL
NFATC1	4772	genome.wustl.edu	37	18	77170557	77170557	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172387.1	+1	reviewed	p.D81	0.989	25	0%	41	14.6%	3	33.3%	-	-	-	NULL
HCN2	610	genome.wustl.edu	37	19	603686	603686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001194.3	+1	validated	p.L259M	1.000	147	0%	236	13.6%	0	-	probably_damaging(0.977)	tolerated(0.07)	deleterious(0.738)	HMMPfam_Ion_trans,superfamily_SSF81324
AZU1	566	genome.wustl.edu	37	19	830715	830715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001700.3	+1	reviewed	p.R123L	0.987	29	0%	49	12.2%	1	100%	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
PRDX2	7001	genome.wustl.edu	37	19	12911687	12911687	+	Silent	SNP	T	T	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181738.1	-1	reviewed	p.T100	0.000	126	0%	167	26.3%	0	-	-	-	-	NULL
NACC1	112939	genome.wustl.edu	37	19	13246888	13246888	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052876.2	+1	validated	p.G289	0.997	218	0%	283	20.8%	7	57.1%	-	-	-	NULL
LOC100289597	100289597	genome.wustl.edu	37	19	15073008	15073008	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343628.1	+1	model	p.Q86*	0.989	107	0%	75	18.7%	0	-	-	-	-	NULL
C19orf12	83636	genome.wustl.edu	37	19	30193874	30193874	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031726.2	-1	validated	p.V68	0.422	104	0%	174	26.4%	1	0%	-	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36229345	36229345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.R2679C	0.998	90	0%	152	21.1%	45	31.1%	probably_damaging(0.999)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
GGN	199720	genome.wustl.edu	37	19	38876248	38876248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152657.3	-1	reviewed	p.A552S	0.000	26	0%	24	20.8%	1	100%	possibly_damaging(0.61)	tolerated(0.86)	neutral(0.212)	NULL
FAM98C	147965	genome.wustl.edu	37	19	38899399	38899399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174905.3	+1	validated	p.M309I	1.000	96	0%	155	18.1%	19	21%	possibly_damaging(0.891)	tolerated(0.28)	neutral(0.382)	HMMPfam_DUF2465
RYR1	6261	genome.wustl.edu	37	19	39002910	39002910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.I3087V	1.000	107	0%	141	17.7%	0	-	benign(0.014)	-	-	NULL
SAMD4B	55095	genome.wustl.edu	37	19	39871713	39871713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000392067	+1	known	p.G644S	0.697	59	0%	146	19.2%	20	35%	unknown(0)	-	-	NULL
SUPT5H	6829	genome.wustl.edu	37	19	39961144	39961144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111020.2	+1	validated	p.L553P	1.000	345	0%	534	14.4%	48	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_Translation proteins SH3-like domain
CYP2A13	1553	genome.wustl.edu	37	19	41597681	41597681	+	Silent	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000766.3	+1	reviewed	p.P233	0.607	345	0%	451	15.3%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
TRAPPC6A	79090	genome.wustl.edu	37	19	45667269	45667269	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024108.1	-1	provisional	e5-2	1.000	100	0%	151	19.2%	0	-	-	-	-	-
DHX34	9704	genome.wustl.edu	37	19	47880402	47880402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.V882A	1.000	58	0%	77	19.5%	7	14.2%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_DUF1605
EHD2	30846	genome.wustl.edu	37	19	48244195	48244195	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.E380*	1.000	50	0%	38	23.7%	30	0%	-	-	-	NULL
LIG1	3978	genome.wustl.edu	37	19	48638981	48638981	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000234.1	-1	reviewed	p.K493	0.867	77	0%	140	13.6%	10	0%	-	-	-	NULL
BAX	581	genome.wustl.edu	37	19	49464139	49464139	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004324.3	+1	reviewed	p.L148	0.999	73	0%	99	12.1%	112	8.9%	-	-	-	HMMPfam_Bcl-2,HMMSmart_BCL,superfamily_SSF56854
RUVBL2	10856	genome.wustl.edu	37	19	49513262	49513262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006666.1	+1	reviewed	p.K201R	1.000	41	0%	71	15.5%	107	38.3%	benign(0.012)	tolerated(0.73)	neutral(0.002)	HMMSmart_AAA,HMMPfam_TIP49,superfamily_SSF52540
AP2A1	160	genome.wustl.edu	37	19	50296347	50296347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014203.2	+1	reviewed	p.R235W	1.000	181	0%	272	17.3%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
SIGLEC11	114132	genome.wustl.edu	37	19	50463845	50463846	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052884.2	-1	validated	p.H141fs	0.001:0.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF350	59348	genome.wustl.edu	37	19	52468148	52468148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021632.3	-1	validated	p.V520M	0.035	129	0%	68	13.2%	9	66.6%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	NULL
MZF1	7593	genome.wustl.edu	37	19	59073792	59073794	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003422.2	-1	validated	p.R617in_frame_del	0.981:0.981:0.993	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NOP56	10528	genome.wustl.edu	37	20	2635158	2635158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006392.2	+1	reviewed	p.A103T	1.000	159	0%	268	14.9%	23	17.3%	benign(0.057)	tolerated(0.14)	neutral(0.253)	NULL
C20orf112	140688	genome.wustl.edu	37	20	31062428	31062428	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080616.3	-1	validated	p.Q29*	0.997	38	0%	74	14.9%	3	0%	-	-	-	NULL
CSE1L	1434	genome.wustl.edu	37	20	47711485	47711485	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001316.2	+1	reviewed	p.T937	0.691	146	0.7%	66	13.6%	122	35.2%	-	-	-	HMMPfam_CAS_CSE1
CABLES2	81928	genome.wustl.edu	37	20	60968647	60968647	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453274	-1	known	p.R37Q	0.836	148	0%	184	12%	4	25%	-	-	-	NULL
RWDD2B	10069	genome.wustl.edu	37	21	30380243	30380243	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016940.2	-1	validated	p.T188	0.004	233	0%	288	18.8%	7	28.5%	-	-	-	HMMPfam_DUF1115
TTC3	7267	genome.wustl.edu	37	21	38507790	38507790	+	Silent	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001894.1	+1	validated	p.N518	0.044	87	0%	42	16.7%	5	0%	-	-	-	superfamily_Spectrin,superfamily_SSF48452
DSCAM	1826	genome.wustl.edu	37	21	41719829	41719829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.S326R	1.000	186	0.5%	108	11.1%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PKNOX1	5316	genome.wustl.edu	37	21	44437109	44437109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004571.3	+1	validated	p.T205M	0.951	69	0%	103	15.5%	6	0%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
ICOSLG	23308	genome.wustl.edu	37	21	45649973	45649973	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015259.4	-1	validated	e6-1	0.532	60	0%	102	25.5%	0	-	-	-	-	-
ITGB2	3689	genome.wustl.edu	37	21	46306658	46306658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.W747L	1.000	46	0%	85	20%	70	1.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Integrin_b_cyt
COL18A1	80781	genome.wustl.edu	37	21	46915322	46915322	+	Silent	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130444.2	+1	reviewed	p.D1243	0.000	163	0%	230	14.8%	215	34.4%	-	-	-	HMMPfam_Collagen,superfamily_C-type lectin-like
SLC7A4	6545	genome.wustl.edu	37	22	21385504	21385504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004173.2	-1	validated	p.A200T	0.840	63	0%	82	13.4%	0	-	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_AA_permease
SGSM1	129049	genome.wustl.edu	37	22	25297908	25297908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.R962C	1.000	49	0%	71	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
MYO18B	84700	genome.wustl.edu	37	22	26272222	26272222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.P1383S	1.000	60	0%	50	16%	0	-	benign(0.006)	tolerated(0.26)	neutral(0.034)	superfamily_P-loop containing nucleoside triphosphate hydrolases
GALR3	8484	genome.wustl.edu	37	22	38219615	38219615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003614.1	+1	reviewed	p.D68N	1.000	88	0%	119	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CELSR1	9620	genome.wustl.edu	37	22	46860106	46860106	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454637	-1	known	p.S602L	0.969	40	0%	81	14.8%	1	0%	-	-	-	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	2269	2269	+	RNA	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	88	0%	35	62.9%	8048	84.3%	-	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	3153	3153	+	RNA	SNP	T	T	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	73	0.000	8	0.875	8048	85.2%	-	-	-	-
SYAP1	94056	genome.wustl.edu	37	X	16759881	16759881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032796.3	+1	validated	p.T135I	1.000	290	0%	247	17.4%	44	43.1%	benign(0.009)	tolerated(0.09)	neutral(0.297)	NULL
FAM47B	170062	genome.wustl.edu	37	X	34961678	34961678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152631.2	+1	validated	p.A244T	0.001	70	0%	127	14.2%	0	-	benign(0.024)	tolerated(0.57)	neutral(0.007)	NULL
SMC1A	8243	genome.wustl.edu	37	X	53442059	53442059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006306.2	-1	reviewed	p.R57W	1.000	139	0%	181	22.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_SSF52540
HSD17B10	3028	genome.wustl.edu	37	X	53461282	53461282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004493.2	-1	reviewed	p.A4V	0.001	59	0%	74	17.6%	27	0%	benign(0.109)	tolerated(0.26)	neutral(0.043)	NULL
KIF4A	24137	genome.wustl.edu	37	X	69510346	69510346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	p.A13V	1.000	198	0%	249	11.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC7A3	84889	genome.wustl.edu	37	X	70149604	70149604	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048164.2	-1	reviewed	p.L82M	1.000	134	0%	156	16%	3	0%	possibly_damaging(0.947)	deleterious(0.04)	deleterious(0.740)	HMMPfam_AA_permease
SLC16A2	6567	genome.wustl.edu	37	X	73744295	73744295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006517.3	+1	reviewed	p.R300H	0.985	239	0%	223	22%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
AGTR2	186	genome.wustl.edu	37	X	115304309	115304309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000686.4	+1	reviewed	p.A259V	1.000	236	0%	52	26.9%	1	0%	benign(0.038)	tolerated(1)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CDR1	1038	genome.wustl.edu	37	X	139866496	139866496	+	Silent	SNP	G	G	A	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004065.2	-1	reviewed	p.D12	0.035	332	0.3%	153	18.3%	1	0%	-	-	-	NULL
LDOC1	23641	genome.wustl.edu	37	X	140271051	140271051	+	Silent	SNP	G	G	T	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012317.2	-1	reviewed	p.P52	1.000	50	0%	82	19.5%	18	0%	-	-	-	NULL
ZNF275	10838	genome.wustl.edu	37	X	152613072	152613072	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A101-01A-12D-A10M-09	TCGA-D1-A101-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080485.2	+1	validated	p.K310T	1.000	28	0%	46	26.1%	2	0%	probably_damaging(0.989)	tolerated(0.14)	deleterious(0.689)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
