Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PADI3	51702	genome.wustl.edu	37	1	17593310	17593310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016233.2	+1	reviewed	p.Q169K	0.455	221	0%	134	44%	0	-	benign(0)	tolerated(0.87)	neutral(0.001)	HMMPfam_PAD_M,superfamily_PAD_central
MAN1C1	57134	genome.wustl.edu	37	1	26110184	26110184	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020379.2	+1	validated	p.D599	0.944	72	0%	64	37.5%	13	30.7%	-	-	-	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
CSF1	1435	genome.wustl.edu	37	1	110459990	110459990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000757.4	+1	validated	p.D101N	0.341	267	0.4%	178	38.8%	11	45.4%	probably_damaging(0.977)	deleterious(0.04)	deleterious(0.768)	HMMPfam_CSF-1,superfamily_4-helical cytokines
SLC16A1	6566	genome.wustl.edu	37	1	113459864	113459864	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003051.3	-1	reviewed	p.S388	1.000	52	0%	38	36.8%	1	0%	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
IRF2BP2	359948	genome.wustl.edu	37	1	234743516	234743517	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182972.2	-1	reviewed	p.P378fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TTC7A	57217	genome.wustl.edu	37	2	47233183	47233183	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440051	+1	known	p.T38M	0.291	136	0%	76	27.6%	16	37.5%	-	-	-	superfamily_Protein prenylyltransferase
ATP6V1B1	525	genome.wustl.edu	37	2	71188070	71188070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001692.3	+1	reviewed	p.R202H	1.000	71	0%	61	45.9%	15	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-synt_ab,superfamily_SSF52540
WDR33	55339	genome.wustl.edu	37	2	128477318	128477318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018383.3	-1	reviewed	p.G761R	0.802	85	0%	71	47.9%	15	46.6%	unknown(0)	tolerated(0.26)	-	NULL
CASP8	841	genome.wustl.edu	37	2	202136260	202136262	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.E170in_frame_del	0.993:0.999:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
COL7A1	1294	genome.wustl.edu	37	3	48605069	48605069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.G2662R	1.000	78	0%	71	42.3%	1	100%	unknown(0)	deleterious(0)	-	HMMPfam_Collagen
MON1A	84315	genome.wustl.edu	37	3	49948054	49948054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032355.3	-1	validated	p.A390S	1.000	34	0%	26	26.9%	17	64.7%	possibly_damaging(0.575)	deleterious(0.01)	deleterious(0.603)	HMMPfam_Mon1
DOCK3	1795	genome.wustl.edu	37	3	51352435	51352435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.P1093L	1.000	141	0%	96	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57489923	57489923	+	Silent	SNP	A	A	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.D302	0.356	164	0%	137	36.5%	0	-	-	-	-	NULL
LOC100289491	100289491	genome.wustl.edu	37	3	149093474	149093474	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342377.1	+1	model	p.S41*	0.989	164	0%	134	31.3%	43	44.1%	possibly_damaging(0.847)	deleterious(0.04)	deleterious(0.674)	NULL
BCHE	590	genome.wustl.edu	37	3	165548253	165548253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.A190D	0.466	209	0%	174	44.3%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_COesterase,superfamily_SSF53474
MECOM	2122	genome.wustl.edu	37	3	168834483	168834483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494292	-1	known	p.R393S	1.000	897	0%	666	37.1%	11	27.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PIK3CA	5290	genome.wustl.edu	37	3	178948044	178948044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.D939G	1.000	125	0%	129	31%	16	56.2%	benign(0.006)	tolerated(1)	-	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
PCYT1A	5130	genome.wustl.edu	37	3	195974340	195974340	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005017.2	-1	provisional	p.N128	0.798	275	0%	185	43.8%	8	62.5%	-	-	-	HMMPfam_CTP_transf_2,superfamily_SSF52374
N4BP2	55728	genome.wustl.edu	37	4	40103821	40103821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018177.3	+1	reviewed	p.K119R	0.005	175	0%	136	40.4%	0	-	possibly_damaging(0.653)	tolerated(0.55)	neutral(0.237)	NULL
UBA6	55236	genome.wustl.edu	37	4	68488921	68488921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018227.5	-1	validated	p.I954V	1.000	272	0%	181	38.7%	21	38%	benign(0.01)	tolerated(0.14)	neutral(0.250)	HMMPfam_UBA_e1_C
UGT2B4	7363	genome.wustl.edu	37	4	70361303	70361303	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021139.2	-1	validated	p.L93	0.000	247	0%	180	45%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
FAM13A	10144	genome.wustl.edu	37	4	89679904	89679904	+	Splice_Site	SNP	C	C	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014883.2	-1	validated	e14+1	1.000	245	0%	171	40.4%	0	-	-	-	-	-
PDE5A	8654	genome.wustl.edu	37	4	120528047	120528047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083.3	-1	reviewed	p.S186	1.000	230	0%	148	37.2%	1	0%	-	-	-	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
LOC100130803	100130803	genome.wustl.edu	37	5	29600878	29600878	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722411.1	+1	model	p.A55	0.866	8	0.000	18	0.722	0	-	-	-	-	superfamily_Ubiquitin-like
IL31RA	133396	genome.wustl.edu	37	5	55185891	55185891	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139017.4	+1	validated	p.R234*	0.510	322	0%	265	47.2%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
PIK3R1	5295	genome.wustl.edu	37	5	67589223	67589225	+	In_Frame_Del	DEL	TAA	TAA	-	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	TAA	TAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.I405in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
ANKRD31	256006	genome.wustl.edu	37	5	74442120	74442120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274361	-1	known	p.P1039L	0.000	211	0%	156	40.4%	0	-	possibly_damaging(0.839)	-	-	superfamily_ANK
ACSL6	23305	genome.wustl.edu	37	5	131305834	131305834	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009185.1	-1	validated	p.G498	0.999	197	0%	128	32.8%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
PCDHB18	54660	genome.wustl.edu	37	5	140615716	140615716	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274705	+1	known	p.R477	0.008	47	0%	47	42.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CPEB4	80315	genome.wustl.edu	37	5	173372107	173372107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030627.2	+1	validated	p.V474L	1.000	327	0%	203	41.4%	0	-	possibly_damaging(0.929)	deleterious(0.04)	deleterious(0.725)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
BTNL9	153579	genome.wustl.edu	37	5	180477302	180477302	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152547.4	+1	validated	p.S223	0.081	133	0%	93	46.2%	1	0%	-	-	-	superfamily_Immunoglobulin
RNGTT	8732	genome.wustl.edu	37	6	89554167	89554167	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003800.3	-1	validated	p.H393P	1.000	540	0%	335	41.2%	2	0%	possibly_damaging(0.744)	tolerated(0.2)	neutral(0.322)	HMMPfam_mRNA_cap_enzyme,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
MDN1	23195	genome.wustl.edu	37	6	90426502	90426502	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.R2204*	1.000	162	0.6%	111	35.1%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
LATS1	9113	genome.wustl.edu	37	6	149997763	149997772	+	Frame_Shift_Del	DEL	GCTGGCGTGC	GCTGGCGTGC	-	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	GCTGGCGTGC	GCTGGCGTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004690.2	-1	reviewed	p.A899fs	1.000:1.000:1.000:1.000:0.968:1.000:1.000:0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF273	10793	genome.wustl.edu	37	7	64388797	64388797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021148.2	+1	reviewed	p.H364R	0.995	68	0%	52	32.7%	6	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF394	84124	genome.wustl.edu	37	7	99096379	99096379	+	Silent	SNP	T	T	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032164.2	-1	provisional	p.R181	0.025	108	0%	87	39.1%	3	100%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
DOCK4	9732	genome.wustl.edu	37	7	111638537	111638537	+	Missense_Mutation	SNP	C	C	T	rs147439564	by1000genomes	TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014705.3	-1	reviewed	p.V62I	0.953	420	0%	332	34%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
GIMAP5	55340	genome.wustl.edu	37	7	150439304	150439304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018384.3	+1	reviewed	p.P26L	0.000	80	0%	47	36.2%	5	0%	benign(0.004)	tolerated(0.05)	neutral(0.345)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC30A8	169026	genome.wustl.edu	37	8	118170052	118170052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173851.2	+1	reviewed	p.V181I	0.957	418	0%	249	39%	0	-	possibly_damaging(0.49)	tolerated(0.09)	neutral(0.460)	HMMPfam_Cation_efflux
KLHL38	340359	genome.wustl.edu	37	8	124665026	124665026	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081675.2	-1	validated	p.C47	1.000	78	0%	53	43.4%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
SLC18A3	6572	genome.wustl.edu	37	10	50820176	50820176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003055.2	+1	reviewed	p.P464S	1.000	41	0%	22	31.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
OGDHL	55753	genome.wustl.edu	37	10	50966551	50966551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.R30C	0.005	34	0%	42	31%	2	50%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
MYPN	84665	genome.wustl.edu	37	10	69955261	69955261	+	Silent	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.R1044	0.990	168	0.6%	145	27.6%	0	-	-	-	-	NULL
GRID1	2894	genome.wustl.edu	37	10	87362131	87362131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017551.2	-1	reviewed	p.R977W	1.000	78	0%	68	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTEN	5728	genome.wustl.edu	37	10	89720751	89720755	+	Frame_Shift_Del	DEL	ATAGC	ATAGC	-	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	ATAGC	ATAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.S302fs	1.000:1.000:1.000:1.000:0.983	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FGFR2	2263	genome.wustl.edu	37	10	123274774	123274774	+	Missense_Mutation	SNP	A	A	G	rs121913474		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.C383R	1.000	217	0%	188	28.7%	68	44.1%	possibly_damaging(0.477)	deleterious(0.01)	deleterious(0.563)	NULL
PDDC1	347862	genome.wustl.edu	37	11	775135	775135	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182612.2	-1	validated	p.S24	0.408	80	0%	48	35.4%	18	50%	-	-	-	superfamily_Class I glutamine amidotransferase-like
MUC6	4588	genome.wustl.edu	37	11	1031224	1031224	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005961.2	-1	validated	p.C173	0.406	74	0%	43	25.6%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
TRIM3	10612	genome.wustl.edu	37	11	6478552	6478552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006458.2	-1	reviewed	p.E224K	1.000	80	0%	66	12.1%	12	16.6%	-	-	-	HMMSmart_SM00502
IGSF22	283284	genome.wustl.edu	37	11	18732213	18732213	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173588.3	-1	validated	p.D753V	1.000	131	0%	95	36.8%	0	-	benign(0.096)	tolerated(0.29)	neutral(0.036)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
OR5B21	219968	genome.wustl.edu	37	11	58275484	58275484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005218.1	-1	provisional	p.I32T	0.087	117	0%	83	43.4%	0	-	benign(0.107)	deleterious(0.01)	neutral(0.414)	superfamily_SSF81321
ARHGEF17	9828	genome.wustl.edu	37	11	73021006	73021006	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.G441	0.060	56	0%	35	34.3%	1	0%	-	-	-	NULL
MOGAT2	80168	genome.wustl.edu	37	11	75439071	75439071	+	Missense_Mutation	SNP	G	G	A	rs61897998		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025098.2	+1	provisional	p.G178R	0.991	160	0%	88	39.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGAT
FAM90A1	55138	genome.wustl.edu	37	12	8377327	8377327	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018088.3	-1	validated	p.P34	0.000	199	0%	118	25.4%	0	-	-	-	-	NULL
TAS2R10	50839	genome.wustl.edu	37	12	10978520	10978520	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023921.1	-1	reviewed	p.I117L	0.002	80	0%	80	43.8%	0	-	benign(0.011)	tolerated(1)	neutral(0.001)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
PTPRO	5800	genome.wustl.edu	37	12	15702065	15702065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030667.1	+1	reviewed	p.S781F	1.000	290	0%	178	40.4%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC48A1	55652	genome.wustl.edu	37	12	48172970	48172970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017842.2	+1	validated	p.R99Q	0.007	165	0%	137	42.3%	14	50%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56637893	56637893	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.I944L	1.000	320	0%	206	34.5%	7	42.8%	benign(0.001)	tolerated(1)	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
IRAK3	11213	genome.wustl.edu	37	12	66641487	66641487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007199.2	+1	reviewed	p.L443F	0.770	199	0%	158	43.7%	3	66.6%	probably_damaging(0.999)	tolerated(0.22)	deleterious(0.532)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
C12orf63	374467	genome.wustl.edu	37	12	97114341	97114341	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198520.2	+1	validated	p.Y746*	1.000	113	0%	81	37%	0	-	-	-	-	NULL
VPS37B	79720	genome.wustl.edu	37	12	123380553	123380553	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024667.2	-1	validated	p.N19K	1.000	28	0%	25	40%	12	83.3%	benign(0.039)	tolerated(0.43)	neutral(0.015)	HMMPfam_Mod_r
NCOR2	9612	genome.wustl.edu	37	12	124829317	124829317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.T1521A	0.003	41	0%	33	45.5%	27	37%	benign(0.003)	tolerated(0.53)	neutral(0.007)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84454828	84454828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052910.1	-1	reviewed	p.P272L	0.993	277	0%	195	41.5%	0	-	benign(0.005)	tolerated(0.21)	neutral(0.044)	superfamily_SSF52058
KIAA0586	9786	genome.wustl.edu	37	14	58953772	58953772	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.C988	0.005	307	0.3%	197	40.6%	2	100%	-	-	-	NULL
TNFAIP2	7127	genome.wustl.edu	37	14	103596437	103596437	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006291.2	+1	reviewed	p.S358	0.979	31	0%	33	54.5%	53	30.1%	-	-	-	HMMPfam_Sec6
ENSG00000245986	0	genome.wustl.edu	37	16	784935	784935	+	RNA	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502230	+1	known	NULL	0.000	38	0%	27	44.4%	0	-	-	-	-	-
DNASE1L2	1775	genome.wustl.edu	37	16	2287847	2287847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001374.2	+1	validated	p.S224N	0.981	19	0%	13	38.5%	18	50%	possibly_damaging(0.948)	tolerated(0.06)	deleterious(0.714)	HMMPfam_Exo_endo_phos,superfamily_DNase I-like,HMMSmart_SM00476
CTCF	10664	genome.wustl.edu	37	16	67654681	67654682	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.D390fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC12A4	6560	genome.wustl.edu	37	16	67995580	67995580	+	Silent	SNP	C	C	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005072.4	-1	validated	p.S80	1.000	202	0%	134	45.5%	4	0%	-	-	-	NULL
SLC7A5	8140	genome.wustl.edu	37	16	87873316	87873316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003486.5	-1	validated	p.V311M	1.000	97	0%	53	32.1%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
PRPF8	10594	genome.wustl.edu	37	17	1561558	1561558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.R1832C	1.000	269	0%	227	41.9%	62	37%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WSCD1	23302	genome.wustl.edu	37	17	6023842	6023842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015253.1	+1	validated	p.R530Q	1.000	29	0%	27	48.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
SLC2A4	6517	genome.wustl.edu	37	17	7188431	7188431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042.2	+1	reviewed	p.R349C	1.000	62	0%	45	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,superfamily_MFS_gen_substrate_transporter
TP53	7157	genome.wustl.edu	37	17	7579330	7579330	+	Silent	SNP	G	G	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.A119	1.000	48	0%	41	41.5%	33	48.4%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
MYH4	4622	genome.wustl.edu	37	17	10352032	10352032	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.S1478	0.988	174	0.6%	148	41.9%	0	-	-	-	-	HMMPfam_Myosin_tail_1
VTN	7448	genome.wustl.edu	37	17	26695967	26695967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000638.3	-1	reviewed	p.P251L	0.998	79	0%	56	42.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX
ERBB2	2064	genome.wustl.edu	37	17	37881332	37881332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.V842I	1.000	69	0%	75	61.3%	63	49.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
SLC4A1	6521	genome.wustl.edu	37	17	42335141	42335141	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000342.3	-1	reviewed	p.E439	0.998	123	0%	78	41%	0	-	-	-	-	HMMPfam_HCO3_cotransp
ABCA9	10350	genome.wustl.edu	37	17	66981057	66981057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.G1450W	0.999	168	0%	107	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH17	8632	genome.wustl.edu	37	17	76503569	76503569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389840	-1	known	p.R1515C	0.714	125	0%	81	29.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DHC_N2
SMAD7	4092	genome.wustl.edu	37	18	46448066	46448066	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005904.2	-1	provisional	p.C319*	0.567	70	0%	53	41.5%	10	30%	-	-	-	HMMPfam_MH2,HMMSmart_DWB,superfamily_SMAD_FHA
ACP5	54	genome.wustl.edu	37	19	11687262	11687262	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111034.1	-1	reviewed	p.D177	0.001	131	0%	75	42.7%	25	16%	-	-	-	HMMPfam_Metallophos,superfamily_SSF56300
BEST2	54831	genome.wustl.edu	37	19	12865502	12865502	+	Silent	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017682.2	+1	reviewed	p.L128	1.000	25	0%	22	27.3%	0	-	-	-	-	HMMPfam_Bestrophin
FCHO1	23149	genome.wustl.edu	37	19	17893882	17893882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015122.2	+1	validated	p.R665H	1.000	178	0%	107	45.8%	2	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMPfam_SAFF
PRODH2	58510	genome.wustl.edu	37	19	36290964	36290964	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021232.1	-1	reviewed	p.G530fs	0.021	-	-	-	-	-	-	-	-	-	NULL
ARHGAP35	2909	genome.wustl.edu	37	19	47502649	47502649	+	Silent	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.V1375	1.000	206	0%	174	37.4%	26	50%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
DHX34	9704	genome.wustl.edu	37	19	47865777	47865777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014681.5	+1	reviewed	p.R474W	1.000	53	0%	25	36%	13	23%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000171101	0	genome.wustl.edu	37	19	51671085	51671085	+	Silent	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341811	+1	known	p.A97	0.000	27	0%	36	33.3%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
KIR3DL2	3812	genome.wustl.edu	37	19	55365455	55365455	+	Silent	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006737.2	+1	reviewed	p.P203	0.000	333	0%	224	33.5%	0	-	-	-	-	superfamily_SSF48726
SEL1L2	80343	genome.wustl.edu	37	20	13856737	13856737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025229.1	-1	validated	p.V351M	1.000	274	0%	165	37%	0	-	benign(0.139)	tolerated(0.07)	neutral(0.331)	HMMPfam_Sel1,HMMSmart_SEL1,superfamily_SSF81901
SSTR4	6754	genome.wustl.edu	37	20	23016449	23016449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.R110H	0.992	60	0%	30	56.7%	0	-	benign(0.043)	tolerated(0.28)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
MYH7B	57644	genome.wustl.edu	37	20	33587061	33587061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.R1507W	1.000	142	0%	82	39%	0	-	benign(0.278)	deleterious(0)	deleterious(0.475)	HMMPfam_Myosin_tail_1
FAM65C	140876	genome.wustl.edu	37	20	49209727	49209727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080829.2	-1	predicted	p.R736H	0.121	29	0%	33	30.3%	0	-	benign(0.009)	tolerated(0.21)	neutral(0.044)	NULL
ITGB2	3689	genome.wustl.edu	37	21	46323325	46323325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000211.3	-1	reviewed	p.D152N	0.240	151	0%	97	45.4%	7	0%	benign(0.07)	tolerated(0.2)	neutral(0.054)	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300
MIR650	723778	genome.wustl.edu	37	22	23165295	23165295	+	RNA	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385101	+1	known	NULL	0.014	62	0%	24	25%	3	0%	-	-	-	-
ST13	6767	genome.wustl.edu	37	22	41231637	41231637	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003932.3	-1	reviewed	p.R169G	0.996	143	0%	110	37.3%	184	45.1%	possibly_damaging(0.68)	deleterious(0)	deleterious(0.687)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
SREBF2	6721	genome.wustl.edu	37	22	42300952	42300952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004599.2	+1	reviewed	p.R1060Q	0.997	20	0%	17	29.4%	84	47.6%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
ZNF81	347344	genome.wustl.edu	37	X	47774615	47774615	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007137.3	+1	reviewed	p.H190Q	0.000	132	0%	109	33%	0	-	benign(0.011)	tolerated(0.13)	neutral(0.253)	NULL
RGAG4	340526	genome.wustl.edu	37	X	71350838	71350838	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024455.3	-1	validated	p.A185T	0.023	49	0%	29	27.6%	0	-	probably_damaging(0.988)	tolerated(0.1)	deleterious(0.724)	NULL
ATRX	546	genome.wustl.edu	37	X	76907622	76907622	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000489.3	-1	reviewed	p.E1513D	1.000	735	0.1%	556	37.8%	5	0%	probably_damaging(0.977)	tolerated(0.41)	neutral(0.434)	superfamily_P-loop containing nucleoside triphosphate hydrolases
HTR2C	3358	genome.wustl.edu	37	X	114141851	114141851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000868.2	+1	reviewed	p.R417L	0.983	188	0%	139	39.6%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144904565	144904565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A161-01A-11D-A122-09	TCGA-D1-A161-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.I208F	0.958	266	0%	206	33%	0	-	possibly_damaging(0.949)	deleterious(0.01)	deleterious(0.798)	superfamily_L domain-like
