Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADCY7	113	genome.wustl.edu	37	16	50334759	50334759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50334759	50334759	C	T	SNP	ADCY7	NM_001114	human	genbank	57_37b	+1	reviewed	missense	c.1210	p.R404W	1.000	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
AKAP6	9472	genome.wustl.edu	37	14	33290718	33290718	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	33290718	33290718	G	A	SNP	AKAP6	NM_004274	human	genbank	57_37b	+1	reviewed	silent	c.3699	p.E1233	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,PatternScan_PFKB_KINASES_2	-	no_errors
AKNA	80709	genome.wustl.edu	37	9	117106081	117106081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117106081	117106081	G	A	SNP	AKNA	NM_030767	human	genbank	57_37b	-1	validated	missense	c.3664	p.H1222Y	0.999	NULL	NULL	-	no_errors
ANO6	196527	genome.wustl.edu	37	12	45810499	45810499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	45810499	45810499	G	A	SNP	ANO6	NM_001142679	human	genbank	57_37b	+1	validated	missense	c.2029	p.V677I	1.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ARHGEF10L	55160	genome.wustl.edu	37	1	17964425	17964425	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17964425	17964425	A	G	SNP	ARHGEF10L	NM_018125	human	genbank	57_37b	+1	validated	missense	c.1970	p.Q657R	1.000	superfamily_PH domain-like	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_WD40 repeat-like	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	159992485	159992485	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159992485	159992485	C	A	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.4361	p.R1454L	0.996	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
BAI1	575	genome.wustl.edu	37	8	143545758	143545758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143545758	143545758	C	T	SNP	BAI1	NM_001702	human	genbank	57_37b	+1	reviewed	missense	c.199	p.R67C	0.995	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
BCORL1	63035	genome.wustl.edu	37	X	129171506	129171506	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129171506	129171506	G	A	SNP	BCORL1	NM_021946	human	genbank	57_37b	+1	validated	silent	c.4470	p.T1490	0.014	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
BMP15	9210	genome.wustl.edu	37	X	50659007	50659007	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50659007	50659007	G	T	SNP	BMP15	NM_005448	human	genbank	57_37b	+1	reviewed	missense	c.579	p.R193S	0.000	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors
C19orf61	56006	genome.wustl.edu	37	19	44254812	44254812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44254812	44254812	G	T	SNP	C19orf61	NM_019108	human	genbank	57_37b	-1	validated	missense	c.82	p.P28T	1.000	NULL	NULL	-	no_errors
C1orf194	127003	genome.wustl.edu	37	1	109649741	109649741	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109649741	109649741	G	T	SNP	C1orf194	NM_001122961	human	genbank	57_37b	-1	validated	missense	c.166	p.P56T	1.000	NULL	NULL	-	no_errors
C1orf226	0	genome.wustl.edu	37	1	162351928	162351929	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162351928	162351929	GA	-	DEL	C1orf226	NM_001085375	human	genbank	57_37b	+1	validated	frame_shift_del	c.237_238	p.T80fs	0.913:0.931	NULL	NULL	(deletion:cds_exon[162351692,162352008])	no_errors
C4orf44	345222	genome.wustl.edu	37	4	3255096	3255096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3255096	3255096	G	A	SNP	C4orf44	NM_001042690	human	genbank	57_37b	+1	validated	silent	c.483	p.S161	0.998	NULL	NULL	-	no_errors
CAPN10	11132	genome.wustl.edu	37	2	241535825	241535825	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241535825	241535825	C	T	SNP	CAPN10	NM_023083	human	genbank	57_37b	+1	reviewed	silent	c.1368	p.H456	0.848	superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720	HMMSmart_SM00230,superfamily_Cysteine proteinases,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,superfamily_Calpain large subunit middle domain (domain III),HMMPfam_Calpain_III,HMMSmart_SM00720	-	no_errors
CDK18	0	genome.wustl.edu	37	1	205492722	205492722	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205492722	205492722	G	A	SNP	CDK18	NM_212503	human	genbank	57_37b	+1	validated	missense	c.242	p.R81Q	0.244	PatternScan_TONB_DEPENDENT_REC_1	PatternScan_TONB_DEPENDENT_REC_1,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CHD6	84181	genome.wustl.edu	37	20	40127957	40127957	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40127957	40127957	A	-	DEL	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.893	p.L298fs	1.000	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	(deletion:cds_exon[40127935,40127997])	no_errors
CHKB	1120	genome.wustl.edu	37	22	51018482	51018482	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	51018482	51018482	T	G	SNP	CHKB	NM_005198	human	genbank	57_37b	-1	reviewed	missense	c.848	p.E283A	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase	superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase	-	no_errors
CHORDC1	26973	genome.wustl.edu	37	11	89938668	89938668	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89938668	89938668	C	-	DEL	CHORDC1	NM_012124	human	genbank	57_37b	-1	validated	frame_shift_del	c.629	p.G210fs	1.000	HMMPfam_CHORD	HMMPfam_CHORD,superfamily_HSP20-like chaperones,HMMPfam_CS	(deletion:cds_exon[89938628,89938733])	no_errors
COL4A6	1288	genome.wustl.edu	37	X	107418928	107418928	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107418928	107418928	C	A	SNP	COL4A6	NM_001847	human	genbank	57_37b	-1	reviewed	missense	c.2789	p.G930V	0.959	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
CSDE1	7812	genome.wustl.edu	37	1	115276687	115276687	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115276687	115276687	G	C	SNP	CSDE1	NM_001130523	human	genbank	57_37b	-1	validated	missense	c.679	p.H227D	1.000	superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK	superfamily_Nucleic acid-binding proteins,HMMPfam_CSD,HMMSmart_SM00357,PatternScan_COLD_SHOCK,PatternScan_PEROXIDASE_2	-	no_errors
CST6	1474	genome.wustl.edu	37	11	65779590	65779590	+	Silent	SNP	C	T	T	rs1131544	by2Hit2Allele;by1000genomes	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65779590	65779590	C	T	SNP	CST6	NM_001323	human	genbank	57_37b	+1	reviewed	silent	c.75	p.D25	0.000	NULL	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	
CUBN	8029	genome.wustl.edu	37	10	16878371	16878371	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	16878371	16878371	T	A	SNP	CUBN	NM_001081	human	genbank	57_37b	-1	reviewed	missense	c.10043	p.N3348I	0.001	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
CXorf57	55086	genome.wustl.edu	37	X	105868340	105868340	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105868340	105868340	C	G	SNP	CXorf57	NM_018015	human	genbank	57_37b	+1	validated	missense	c.807	p.D269E	0.594	superfamily_Nucleic acid-binding proteins	superfamily_Nucleic acid-binding proteins	-	no_errors
DHX30	22907	genome.wustl.edu	37	3	47891166	47891166	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47891166	47891166	G	C	SNP	DHX30	NM_138615	human	genbank	57_37b	+1	reviewed	missense	c.3238	p.V1080L	0.994	HMMPfam_DUF1605	superfamily_dsRNA-binding domain-like,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
DIRAS2	54769	genome.wustl.edu	37	9	93375798	93375798	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	93375798	93375798	G	A	SNP	DIRAS2	NM_017594	human	genbank	57_37b	-1	validated	silent	c.312	p.I104	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174	-	no_errors
DMD	1756	genome.wustl.edu	37	X	32305754	32305754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32305754	32305754	G	T	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.6182	p.A2061E	0.998	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
ECE1	1889	genome.wustl.edu	37	1	21585236	21585238	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21585236	21585238	AGA	-	DEL	ECE1	NM_001397	human	genbank	57_37b	-1	reviewed	in_frame_del	c.712_710	p.F237in_frame_del	1.000:1.000:1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	(deletion:cds_exon[21585186,21585332])	no_errors
EFEMP1	2202	genome.wustl.edu	37	2	56149540	56149540	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	56149540	56149540	C	T	SNP	EFEMP1	NM_001039348	human	genbank	57_37b	-1	reviewed	silent	c.36	p.L12	1.000	NULL	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
ELP3	55140	genome.wustl.edu	37	8	27995267	27995267	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27995267	27995267	C	-	DEL	ELP3	NM_018091	human	genbank	57_37b	+1	validated	frame_shift_del	c.959	p.L321fs	1.000	superfamily_Radical SAM enzymes,HMMSmart_SM00729	superfamily_Radical SAM enzymes,HMMSmart_SM00729,HMMPfam_Radical_SAM,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	(deletion:cds_exon[27995215,27995408])	no_errors
ENSG00000187812	0	genome.wustl.edu	37	15	76073206	76073206	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	76073206	76073206	G	A	SNP	ENSG00000187812	ENST00000395215	human	ensembl	57_37b	+1	known	missense	c.454	p.E152K	0.999	NULL	NULL	-	no_errors
ENSG00000221123	0	genome.wustl.edu	37	8	143026915	143026926	+	RNA	DEL	GCATGTGTGTGC	GCATGTGTGTGC	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	GCATGTGTGTGC	GCATGTGTGTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143026915	143026926	GCATGTGTGTGC	-	DEL	ENSG00000221123	ENST00000408196	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.010:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000	-	-	(deletion:rna[143026860,143026986])	no_errors
FOXP3	50943	genome.wustl.edu	37	X	49108054	49108055	+	Frame_Shift_Ins	INS	-	-	AGGCCTG	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49108054	49108055	-	AGGCCTG	INS	FOXP3	ENST00000455775	human	ensembl	57_37b	-1	known	frame_shift_ins	c.1112_1111	p.W371fs	0.010:0.002	HMMSmart_FH,HMMPfam_Fork_head	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head	-	no_errors
HAVCR1	26762	genome.wustl.edu	37	5	156456795	156456795	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156456795	156456795	G	A	SNP	HAVCR1	ENST00000425854	human	ensembl	57_37b	-1	known	missense	c.1010	p.S337F	0.001	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,PatternScan_IG_MHC	-	no_errors
HTR3D	200909	genome.wustl.edu	37	3	183756031	183756031	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183756031	183756031	C	T	SNP	HTR3D	NM_001145143	human	genbank	57_37b	+1	reviewed	missense	c.739	p.R247C	0.702	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
IFT74	80173	genome.wustl.edu	37	9	26984316	26984316	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	26984316	26984316	A	-	DEL	IFT74	NM_001099222	human	genbank	57_37b	+1	validated	frame_shift_del	c.367	p.N123fs	1.000	NULL	NULL	(deletion:cds_exon[26984255,26984353])	no_errors
IL18R1	8809	genome.wustl.edu	37	2	103001345	103001345	+	Silent	SNP	C	C	T	rs11465644	byCluster	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103001345	103001345	C	T	SNP	IL18R1	NM_003855	human	genbank	57_37b	+1	reviewed	silent	c.696	p.N232	0.060	superfamily_SSF48726,HMMSmart_IG	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	
INS-IGF2	0	genome.wustl.edu	37	11	2153285	2153286	+	RNA	INS	-	-	TA	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2153285	2153286	-	TA	INS	INS-IGF2	NR_003512	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.071:0.041	-	-	-	no_errors
KCP	375616	genome.wustl.edu	37	7	128542848	128542848	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128542848	128542848	G	T	SNP	KCP	ENST00000441244	human	ensembl	57_37b	-1	known	nonsense	c.639	p.C213*	0.994	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMSmart_SM00214,HMMPfam_VWC,HMMSmart_SM00215,PatternScan_VWFC_1,PatternScan_EGF_2,HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL	-	no_errors
KIAA0240	23506	genome.wustl.edu	37	6	42824907	42824907	+	Silent	SNP	G	G	A	rs9471932	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42824907	42824907	G	A	SNP	KIAA0240	NM_015349	human	genbank	57_37b	+1	validated	silent	c.2187	p.A729	0.901	NULL	NULL	-	
KIAA1210	57481	genome.wustl.edu	37	X	118239020	118239020	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118239020	118239020	C	A	SNP	KIAA1210	NM_020721	human	genbank	57_37b	-1	validated	missense	c.1003	p.D335Y	0.000	NULL	NULL	-	no_errors
KIAA2022	340533	genome.wustl.edu	37	X	73961157	73961157	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73961157	73961157	G	T	SNP	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	missense	c.3235	p.L1079I	1.000	NULL	NULL	-	no_errors
KLF15	28999	genome.wustl.edu	37	3	126062722	126062722	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126062722	126062722	C	A	SNP	KLF15	NM_014079	human	genbank	57_37b	-1	validated	nonsense	c.1099	p.E367*	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LAMA1	284217	genome.wustl.edu	37	18	7033069	7033069	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	7033069	7033069	C	A	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	missense	c.2077	p.A693S	0.996	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_EGF/Laminin	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-	no_errors
LENG9	94059	genome.wustl.edu	37	19	54974318	54974318	+	Missense_Mutation	SNP	T	T	C	rs10406453	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54974318	54974318	T	C	SNP	LENG9	NM_198988	human	genbank	57_37b	-1	validated	missense	c.458	p.H153R	1.000	NULL	HMMPfam_zf-CCCH,superfamily_Cyc_nuc_Pdiester	-	
LEPREL1	55214	genome.wustl.edu	37	3	189681772	189681772	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	189681772	189681772	G	C	SNP	LEPREL1	NM_018192	human	genbank	57_37b	-1	validated	missense	c.2009	p.T670S	1.000	HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	no_errors
LPHN3	23284	genome.wustl.edu	37	4	62936207	62936207	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	62936207	62936207	C	A	SNP	LPHN3	NM_015236	human	genbank	57_37b	+1	reviewed	missense	c.3991	p.P1331T	1.000	HMMPfam_Latrophilin	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors
MAPRE2	10982	genome.wustl.edu	37	18	32720267	32720267	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	32720267	32720267	C	A	SNP	MAPRE2	NM_014268	human	genbank	57_37b	+1	reviewed	missense	c.918	p.H306Q	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMPfam_EB1	-	no_errors
MED14	9282	genome.wustl.edu	37	X	40573796	40573796	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	40573796	40573796	C	T	SNP	MED14	NM_004229	human	genbank	57_37b	-1	reviewed	missense	c.515	p.C172Y	1.000	HMMPfam_MED14	HMMPfam_MED14	-	no_errors
MLLT4	4301	genome.wustl.edu	37	6	168291556	168291556	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168291556	168291556	C	-	DEL	MLLT4	NM_001040001	human	genbank	57_37b	+1	validated	frame_shift_del	c.1021	p.Q341fs	1.000	HMMPfam_RA,HMMSmart_RA	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	(deletion:cds_exon[168291542,168291709])	no_errors
MYO1H	283446	genome.wustl.edu	37	12	109835562	109835562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109835562	109835562	G	A	SNP	MYO1H	NM_001101421	human	genbank	57_37b	+1	provisional	missense	c.467	p.R156Q	1.000	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1	-	no_errors
MYO9B	4650	genome.wustl.edu	37	19	17212770	17212770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17212770	17212770	C	T	SNP	MYO9B	NM_004145	human	genbank	57_37b	+1	reviewed	silent	c.243	p.N81	0.346	HMMPfam_RA,HMMSmart_RA	HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
NLRP7	199713	genome.wustl.edu	37	19	55451245	55451245	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55451245	55451245	C	T	SNP	NLRP7	NM_001127255	human	genbank	57_37b	-1	reviewed	silent	c.942	p.Q314	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
NOMO2	283820	genome.wustl.edu	37	16	18542797	18542797	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18542797	18542797	A	C	SNP	NOMO2	NM_001004060	human	genbank	57_37b	-1	reviewed	missense	c.1528	p.S510A	1.000	superfamily_Starch-binding domain-like	superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain	-	no_errors
NOTCH4	4855	genome.wustl.edu	37	6	32188383	32188383	+	Missense_Mutation	SNP	T	T	C	rs116185472	byCluster;by1000genomes	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32188383	32188383	T	C	SNP	NOTCH4	NM_004557	human	genbank	57_37b	-1	reviewed	missense	c.958	p.T320A	0.162	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	
NUF2	83540	genome.wustl.edu	37	1	163313539	163313539	+	Missense_Mutation	SNP	C	C	T	rs11802875	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163313539	163313539	C	T	SNP	NUF2	NM_031423	human	genbank	57_37b	+1	reviewed	missense	c.686	p.S229L	0.343	NULL	HMMPfam_Nuf2	-	
OCRL	4952	genome.wustl.edu	37	X	128709149	128709149	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	128709149	128709149	A	T	SNP	OCRL	NM_000276	human	genbank	57_37b	+1	reviewed	missense	c.1635	p.K545N	1.000	superfamily_DNase I-like	superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
OFD1	8481	genome.wustl.edu	37	X	13764997	13764997	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13764997	13764997	A	T	SNP	OFD1	NM_003611	human	genbank	57_37b	+1	reviewed	missense	c.753	p.K251N	0.001	NULL	HMMSmart_SM00667,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
OR2T6	254879	genome.wustl.edu	37	1	248551324	248551324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248551324	248551324	C	T	SNP	OR2T6	NM_001005471	human	genbank	57_37b	+1	provisional	missense	c.415	p.R139W	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR7A17	26333	genome.wustl.edu	37	19	14992035	14992035	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14992035	14992035	T	C	SNP	OR7A17	NM_030901	human	genbank	57_37b	-1	provisional	missense	c.133	p.I45V	0.848	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55861593	55861593	G	A	SNP	OR8I2	NM_001003750	human	genbank	57_37b	+1	provisional	silent	c.810	p.A270	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OSBPL8	114882	genome.wustl.edu	37	12	76769099	76769099	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76769099	76769099	G	T	SNP	OSBPL8	NM_020841	human	genbank	57_37b	-1	reviewed	missense	c.1781	p.T594K	1.000	HMMPfam_Oxysterol_BP	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
PCDHB12	56124	genome.wustl.edu	37	5	140590645	140590645	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140590645	140590645	C	A	SNP	PCDHB12	NM_018932	human	genbank	57_37b	+1	reviewed	silent	c.2166	p.V722	0.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PDE10A	10846	genome.wustl.edu	37	6	165749696	165749696	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	165749696	165749696	C	A	SNP	PDE10A	NM_001130690	human	genbank	57_37b	-1	validated	missense	c.2183	p.G728V	1.000	superfamily_SSF109604,HMMPfam_PDEase_I	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PGLS	25796	genome.wustl.edu	37	19	17631846	17631846	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17631846	17631846	G	T	SNP	PGLS	NM_012088	human	genbank	57_37b	+1	validated	missense	c.733	p.A245S	0.984	superfamily_SSF100950,HMMPfam_Glucosamine_iso	superfamily_SSF100950,HMMPfam_Glucosamine_iso	-	no_errors
PLAU	5328	genome.wustl.edu	37	10	75672712	75672712	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75672712	75672712	G	A	SNP	PLAU	NM_002658	human	genbank	57_37b	+1	reviewed	missense	c.224	p.G75D	0.998	superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle	superfamily_Kringle-like,PatternScan_EGF_1,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
RAB9B	51209	genome.wustl.edu	37	X	103080361	103080361	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	103080361	103080361	G	T	SNP	RAB9B	NM_016370	human	genbank	57_37b	-1	reviewed	silent	c.354	p.P118	0.998	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors
RNF123	63891	genome.wustl.edu	37	3	49758302	49758302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49758302	49758302	C	T	SNP	RNF123	NM_022064	human	genbank	57_37b	+1	reviewed	missense	c.3713	p.S1238F	1.000	superfamily_RING/U-box	HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
SCAPER	49855	genome.wustl.edu	37	15	77067311	77067311	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77067311	77067311	G	C	SNP	SCAPER	NM_020843	human	genbank	57_37b	-1	validated	missense	c.917	p.P306R	0.040	NULL	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SDR39U1	56948	genome.wustl.edu	37	14	24910883	24910883	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24910883	24910883	C	-	DEL	SDR39U1	NM_020195	human	genbank	57_37b	-1	validated	frame_shift_del	c.325	p.V109fs	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase,HMMPfam_DUF1731	(deletion:cds_exon[24910880,24911001])	no_errors
SHOX2	6474	genome.wustl.edu	37	3	157823481	157823481	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	157823481	157823481	C	T	SNP	SHOX2	NM_006884	human	genbank	57_37b	-1	reviewed	silent	c.333	p.P111	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	no_errors
SIAH1	6477	genome.wustl.edu	37	16	48396255	48396255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48396255	48396255	T	C	SNP	SIAH1	NM_001006610	human	genbank	57_37b	-1	reviewed	missense	c.178	p.T60A	1.000	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_Sina,superfamily_Traf_like	-	no_errors
SKIL	6498	genome.wustl.edu	37	3	170102343	170102343	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	170102343	170102343	A	G	SNP	SKIL	NM_005414	human	genbank	57_37b	+1	validated	missense	c.1219	p.K407E	1.000	NULL	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
SNORA36C	0	genome.wustl.edu	37	2	69747270	69747271	+	RNA	INS	-	-	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	69747270	69747271	-	G	INS	SNORA36C	NR_003705	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.999:0.996	-	-	-	no_errors
SOX14	8403	genome.wustl.edu	37	3	137484051	137484051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	137484051	137484051	C	T	SNP	SOX14	NM_004189	human	genbank	57_37b	+1	reviewed	missense	c.425	p.A142V	1.000	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
SPATA4	132851	genome.wustl.edu	37	4	177113974	177113974	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	177113974	177113974	A	-	DEL	SPATA4	NM_144644	human	genbank	57_37b	-1	provisional	frame_shift_del	c.492	p.F164fs	0.000	HMMPfam_DUF1042	HMMPfam_DUF1042	(deletion:cds_exon[177113778,177113998])	no_errors
STAC	6769	genome.wustl.edu	37	3	36547281	36547281	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	36547281	36547281	C	-	DEL	STAC	NM_003149	human	genbank	57_37b	+1	provisional	frame_shift_del	c.875	p.L293fs	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Cysteine-rich domain,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	(deletion:cds_exon[36547238,36547326])	no_errors
TMEM8B	51754	genome.wustl.edu	37	9	35853682	35853682	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35853682	35853682	G	T	SNP	TMEM8B	NM_001042589	human	genbank	57_37b	+1	provisional	missense	c.1264	p.G422C	1.000	NULL	PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
TNRC6C	57690	genome.wustl.edu	37	17	76046623	76046623	+	Missense_Mutation	SNP	G	G	A	rs71385927	byCluster;byFrequency	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76046623	76046623	G	A	SNP	TNRC6C	NM_001142640	human	genbank	57_37b	+1	validated	missense	c.1480	p.D494N	0.999	NULL	HMMPfam_Ago_hook,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577538	7577538	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.743	p.R248Q	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	
TTYH1	57348	genome.wustl.edu	37	19	54930398	54930398	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54930398	54930398	C	A	SNP	TTYH1	NM_001005367	human	genbank	57_37b	+1	reviewed	missense	c.223	p.P75T	0.776	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
UGT1A4	54657	genome.wustl.edu	37	2	234681013	234681013	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234681013	234681013	C	T	SNP	UGT1A4	NM_007120	human	genbank	57_37b	+1	reviewed	silent	c.1413	p.G471	0.978	HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
WBSCR17	64409	genome.wustl.edu	37	7	71036313	71036313	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	71036313	71036313	T	A	SNP	WBSCR17	NM_022479	human	genbank	57_37b	+1	reviewed	missense	c.1006	p.F336I	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors
WISP1	8840	genome.wustl.edu	37	8	134232988	134232988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	134232988	134232988	C	T	SNP	WISP1	NM_003882	human	genbank	57_37b	+1	reviewed	missense	c.514	p.R172C	0.007	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
WSB1	26118	genome.wustl.edu	37	17	25637136	25637136	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	25637136	25637136	C	G	SNP	WSB1	NM_015626	human	genbank	57_37b	+1	reviewed	missense	c.934	p.R312G	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors
XDH	7498	genome.wustl.edu	37	2	31605877	31605877	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	31605877	31605877	T	A	SNP	XDH	NM_000379	human	genbank	57_37b	-1	reviewed	missense	c.1028	p.K343M	1.000	superfamily_FAD-binding_2,HMMPfam_FAD_binding_5	superfamily_Ferredoxin,HMMPfam_Fer2,PatternScan_2FE2S_FER_1,HMMPfam_Fer2_2,superfamily_2Fe-2S_bind,superfamily_FAD-binding_2,HMMPfam_FAD_binding_5,superfamily_CO_deh_flav_C,HMMPfam_CO_deh_flav_C,superfamily_Aldxan_dh_hamm,HMMPfam_Ald_Xan_dh_C,superfamily_Ald_xan_DH_mo_bd,HMMPfam_Ald_Xan_dh_C2,PatternScan_MOLYBDOPTERIN_EUK	-	no_errors
ZFYVE9	9372	genome.wustl.edu	37	1	52703400	52703400	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	52703400	52703400	G	-	DEL	ZFYVE9	NM_004799	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.311	p.W104fs	1.000	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	(deletion:cds_exon[52703160,52705267])	no_errors
ZNF276	92822	genome.wustl.edu	37	16	89804566	89804566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89804566	89804566	C	T	SNP	ZNF276	NM_001113525	human	genbank	57_37b	+1	validated	missense	c.1757	p.A586V	0.959	NULL	HMMPfam_zf-AD,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF512	84450	genome.wustl.edu	37	2	27806578	27806579	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27806578	27806579	-	A	INS	ZNF512	NM_032434	human	genbank	57_37b	+1	validated	frame_shift_ins	c.84_85	p.N29fs	0.988:1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF579	163033	genome.wustl.edu	37	19	56090537	56090537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56090537	56090537	C	T	SNP	ZNF579	NM_152600	human	genbank	57_37b	-1	validated	missense	c.469	p.A157T	0.001	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF778	197320	genome.wustl.edu	37	16	89294298	89294298	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89294298	89294298	A	G	SNP	ZNF778	NM_182531	human	genbank	57_37b	+1	validated	silent	c.1518	p.E506	0.009	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF804B	219578	genome.wustl.edu	37	7	88965288	88965288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A109-01A-11D-A10M-09	TCGA-E2-A109-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	88965288	88965288	C	T	SNP	ZNF804B	NM_181646	human	genbank	57_37b	+1	provisional	missense	c.2992	p.P998S	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
