Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CAMTA1	23261	broad.mit.edu	37	1	7723421	7723421	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:7723421G>A	uc001aoi.2	+	9	1021	c.814G>A	c.(814-816)GGC>AGC	p.G272S		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	272					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AGGAGCTGGCGGCAGCGTGCA	0.448													42	207					0	0	0	0
CSMD2	114784	broad.mit.edu	37	1	34192216	34192216	+	Silent	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:34192216C>T	uc001bxn.1	-	16	2348	c.2319G>A	c.(2317-2319)AAG>AAA	p.K773K	CSMD2_uc001bxm.1_Silent_p.K813K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	773	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCAAGGCATCCTTGTAGAAGC	0.617													9	44					0	0	0	0
THRAP3	9967	broad.mit.edu	37	1	36769445	36769445	+	Missense_Mutation	SNP	C	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:36769445C>G	uc001cae.3	+	12	2919	c.2695C>G	c.(2695-2697)CGG>GGG	p.R899G	THRAP3_uc001caf.3_Missense_Mutation_p.R899G|C1orf113_uc010oia.1_5'Flank	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	899					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GAGCCGGGGCCGGGGCCGAGG	0.597			T	USP6	aneurysmal bone cysts								27	104					0	0	0	0
PYHIN1	149628	broad.mit.edu	37	1	158906926	158906926	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:158906926G>A	uc001ftb.2	+	2	471	c.226G>A	c.(226-228)GGA>AGA	p.G76R	PYHIN1_uc001fta.3_Missense_Mutation_p.G76R|PYHIN1_uc001ftc.2_Missense_Mutation_p.G76R|PYHIN1_uc001ftd.2_Missense_Mutation_p.G76R|PYHIN1_uc001fte.2_Missense_Mutation_p.G76R	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	76	DAPIN.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					ACCAACACTGGGAGACCTTGC	0.428													8	32					0	0	0	0
OR2M2	391194	broad.mit.edu	37	1	248344093	248344093	+	Missense_Mutation	SNP	C	T	T	rs149761766		TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:248344093C>T	uc010pzf.1	+	1	806	c.806C>T	c.(805-807)ACG>ATG	p.T269M		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CACTCCCCAACGCAGGACAAG	0.502													38	136					0	0	0	0
CUBN	8029	broad.mit.edu	37	10	16943387	16943387	+	Missense_Mutation	SNP	G	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:16943387G>T	uc001ioo.2	-	52	8186	c.8134C>A	c.(8134-8136)CTG>ATG	p.L2712M	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.L68M	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2712	CUB 20.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CAGTGGGTCAGGCTGTCATAA	0.478													24	72					3.6726e-16	4.0661e-16	1	0
C10orf28	27291	broad.mit.edu	37	10	99991344	99991344	+	Missense_Mutation	SNP	A	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:99991344A>G	uc001kow.3	+	5	2156	c.1861A>G	c.(1861-1863)ATT>GTT	p.I621V	C10orf28_uc001kox.3_Missense_Mutation_p.I635V|C10orf28_uc001koy.3_Missense_Mutation_p.I621V|C10orf28_uc009xvx.2_Missense_Mutation_p.I621V|C10orf28_uc009xvy.2_Missense_Mutation_p.I27V|C10orf28_uc001koz.3_RNA	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	621							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		AGTTCCTGATATTGACCTCAG	0.393													26	46					0	0	0	0
C10orf118	55088	broad.mit.edu	37	10	115891782	115891782	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:115891782G>A	uc001lbb.1	-	11	2469	c.1817C>T	c.(1816-1818)TCC>TTC	p.S606F	C10orf118_uc009xyd.1_Missense_Mutation_p.S204F|C10orf118_uc001lbc.1_Missense_Mutation_p.S606F|C10orf118_uc009xye.1_RNA	NM_018017	NP_060487	Q7Z3E2	CJ118_HUMAN	CTCL tumor antigen L14-2	606	Potential.									ovary(2)	2		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0161)|all cancers(201;0.0397)		CAAAGAATTGGATTCAGACTG	0.378													31	63					0	0	0	0
EPS8L2	64787	broad.mit.edu	37	11	720606	720606	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:720606G>C	uc001lqt.2	+	6	584	c.337G>C	c.(337-339)GAA>CAA	p.E113Q	EPS8L2_uc010qwj.1_Missense_Mutation_p.E129Q|EPS8L2_uc001lqu.2_Missense_Mutation_p.E113Q|EPS8L2_uc010qwk.1_Missense_Mutation_p.E129Q|EPS8L2_uc001lqv.2_Missense_Mutation_p.E68Q|EPS8L2_uc001lqw.2_5'Flank|EPS8L2_uc001lqx.2_5'Flank	NM_022772	NP_073609	Q9H6S3	ES8L2_HUMAN	epidermal growth factor receptor pathway	113	PID.					cytoplasm				pancreas(1)	1		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;4.37e-27)|Epithelial(43;2.81e-26)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-20)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGAGGAGCTGGAAGACTTCCC	0.677													4	17					0	0	0	0
FIBIN	387758	broad.mit.edu	37	11	27016455	27016455	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:27016455G>C	uc001mrd.2	+	1	828	c.382G>C	c.(382-384)GAT>CAT	p.D128H		NM_203371	NP_976249	Q8TAL6	FIBIN_HUMAN	fin bud initiation factor homolog precursor	128						extracellular region|Golgi apparatus					0						CCAGATCGGGGATGCCTACTC	0.602													13	60					0	0	0	0
SUV420H1	51111	broad.mit.edu	37	11	67939048	67939048	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:67939048G>C	uc001onm.1	-	7	1038	c.782C>G	c.(781-783)GCT>GGT	p.A261G	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_Missense_Mutation_p.A89G|SUV420H1_uc009ysf.2_Missense_Mutation_p.A21G|SUV420H1_uc001ono.1_Missense_Mutation_p.A261G|SUV420H1_uc001onp.2_Missense_Mutation_p.A261G|SUV420H1_uc010rqa.1_Missense_Mutation_p.A238G|SUV420H1_uc001onq.2_Missense_Mutation_p.A261G	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	261	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CCAGAGTTGAGCACAGTTTTT	0.463													9	19					0	0	0	0
PPFIA1	8500	broad.mit.edu	37	11	70222703	70222703	+	Silent	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:70222703T>C	uc001opo.2	+	25	3579	c.3381T>C	c.(3379-3381)GAT>GAC	p.D1127D	PPFIA1_uc001opn.1_Silent_p.D1127D|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_Silent_p.D266D|PPFIA1_uc001ops.2_Silent_p.D166D|uc001opt.1_Intron	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	1127					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			GAAGGTTTGATGAAGTAAGTT	0.323													19	88					0	0	0	0
FOLR4	390243	broad.mit.edu	37	11	94040769	94040769	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:94040769G>A	uc010rud.1	+	4	643	c.643G>A	c.(643-645)GTG>ATG	p.V215M		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	222						extracellular region	folic acid binding|receptor activity			ovary(1)	1						CAATGTGGCCGTGGCCCGCCT	0.597													42	191					0	0	0	0
MMP12	4321	broad.mit.edu	37	11	102743642	102743642	+	Missense_Mutation	SNP	C	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:102743642C>A	uc001phk.2	-	2	348	c.303G>T	c.(301-303)AGG>AGT	p.R101S		NM_002426	NP_002417	P39900	MMP12_HUMAN	matrix metalloproteinase 12 preproprotein	101					positive regulation of epithelial cell proliferation involved in wound healing|proteolysis|wound healing, spreading of epidermal cells	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.014)	Acetohydroxamic Acid(DB00551)	CTGGCATTTCCCTGAAATGAT	0.507													8	25					2.17888e-05	2.25151e-05	1	0
C11orf61	79684	broad.mit.edu	37	11	124637180	124637180	+	Silent	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr11:124637180T>C	uc001qba.1	-	4	1595	c.1572A>G	c.(1570-1572)AAA>AAG	p.K524K	C11orf61_uc001qaz.1_Silent_p.K472K|C11orf61_uc010sap.1_Silent_p.K244K|C11orf61_uc001qay.1_Silent_p.K294K	NM_024631	NP_078907	Q6P1R3	CK061_HUMAN	hypothetical protein LOC79684	524											0	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.63e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0079)		TGTAGATGGATTTGGGGGAAA	0.408													24	50					0	0	0	0
MYBPC1	4604	broad.mit.edu	37	12	102064187	102064187	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr12:102064187G>C	uc001tii.2	+	23	2694	c.2592G>C	c.(2590-2592)CAG>CAC	p.Q864H	MYBPC1_uc001tig.2_Missense_Mutation_p.Q871H|MYBPC1_uc010svq.1_Missense_Mutation_p.Q833H|MYBPC1_uc001tih.2_Missense_Mutation_p.Q871H|MYBPC1_uc001tij.2_Missense_Mutation_p.Q846H|MYBPC1_uc010svr.1_Missense_Mutation_p.Q846H|MYBPC1_uc010svs.1_Missense_Mutation_p.Q864H|MYBPC1_uc010svt.1_Missense_Mutation_p.Q834H|MYBPC1_uc010svu.1_Missense_Mutation_p.Q827H|MYBPC1_uc001tik.2_Missense_Mutation_p.Q820H|MYBPC1_uc001til.2_5'UTR|MYBPC1_uc001tim.2_5'UTR	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	864	Ig-like C2-type 6.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TACCTTTCCAGGTAAGAGTTC	0.403													15	56					0	0	0	0
HVCN1	84329	broad.mit.edu	37	12	111099133	111099133	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr12:111099133C>A	uc001trs.1	-	4	307	c.142G>T	c.(142-144)GAA>TAA	p.E48*	HVCN1_uc001trq.1_Nonsense_Mutation_p.E48*|HVCN1_uc001trt.1_Nonsense_Mutation_p.E48*|HVCN1_uc010syd.1_Nonsense_Mutation_p.E28*	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	48	Cytoplasmic (Potential).|Poly-Glu.				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						tcctcctcttcattctccCAT	0.517													11	30					6.40141e-05	6.5421e-05	1	0
GRINL1A	81488	broad.mit.edu	37	15	58001429	58001429	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr15:58001429G>C	uc002aet.3	+	2	771	c.631G>C	c.(631-633)GAA>CAA	p.E211Q	GCOM1_uc002aem.2_Intron|GCOM1_uc002aeq.2_Intron|GCOM1_uc002aen.2_Intron|GCOM1_uc010bfy.2_Intron|GCOM1_uc002aeo.2_Intron|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_Intron|GRINL1A_uc002aes.2_5'UTR|GRINL1A_uc002aev.1_3'UTR|GRINL1A_uc010ugu.1_RNA|GRINL1A_uc002aeu.3_Missense_Mutation_p.E54Q	NM_015532	NP_056347	P0CAP1	GCOM1_HUMAN	glutamate receptor, ionotropic, N-methyl	293	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band					0				all cancers(107;0.0697)|GBM - Glioblastoma multiforme(80;0.12)		ACAGTCAGAAGAAAACGCAAG	0.458													10	25					0	0	0	0
NARG2	79664	broad.mit.edu	37	15	60758824	60758824	+	Missense_Mutation	SNP	A	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr15:60758824A>C	uc002agp.2	-	5	732	c.497T>G	c.(496-498)ATG>AGG	p.M166R	NARG2_uc002ago.2_Missense_Mutation_p.M29R|NARG2_uc010bgk.2_Missense_Mutation_p.M166R|NARG2_uc002agr.1_Missense_Mutation_p.M166R	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	166						nucleus				ovary(1)|lung(1)	2						ATCAGAAAGCATATTATAATC	0.348													19	46					0	0	0	0
Unknown	0	broad.mit.edu	37	15	102304772	102304772	+	5'Flank	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr15:102304772T>C	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccf.3_RNA|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		CACAGCGGCGTGACGAGACTC	0.587													4	13					0	0	0	0
PIGQ	9091	broad.mit.edu	37	16	624737	624737	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:624737G>A	uc002cho.2	+	2	765	c.663G>A	c.(661-663)TCG>TCA	p.S221S	PIGQ_uc010bqw.2_Silent_p.S221S|PIGQ_uc002chm.2_Silent_p.S221S|PIGQ_uc002chn.2_Silent_p.S221S|PIGQ_uc010uui.1_Silent_p.S235S	NM_148920	NP_683721	Q9BRB3	PIGQ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	221	Leu-rich.				C-terminal protein lipidation|carbohydrate metabolic process|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			central_nervous_system(1)	1		Hepatocellular(780;0.00335)				GCCTGCTGTCGCTGGTCTCAG	0.662													5	19					0	0	0	0
NAGPA	51172	broad.mit.edu	37	16	5083632	5083632	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:5083632C>T	uc002cyg.2	-	2	205	c.184G>A	c.(184-186)GAG>AAG	p.E62K	ALG1_uc002cyj.2_5'Flank|NAGPA_uc002cyf.2_5'UTR|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_5'UTR|NAGPA_uc010uxx.1_Missense_Mutation_p.E62K	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	62	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	GGCCAACTCTCGTGCTCGCGG	0.756													6	21					0	0	0	0
SRCAP	10847	broad.mit.edu	37	16	30735404	30735404	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:30735404G>A	uc002dze.1	+	25	5044	c.4659G>A	c.(4657-4659)TCG>TCA	p.S1553S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.S1348S|SRCAP_uc010bzz.1_Silent_p.S1123S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1553	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TGCCAGCTTCGGCTCTGGCCA	0.592													10	18					0	0	0	0
Unknown	0	broad.mit.edu	37	16	32077585	32077585	+	RNA	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:32077585G>A	uc010vfu.1	+	1		c.27G>A								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		GTGAAAGGCCGATTCACCATC	0.517													93	235					0	0	0	0
PHKB	5257	broad.mit.edu	37	16	47531396	47531396	+	Missense_Mutation	SNP	A	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:47531396A>T	uc002eev.3	+	2	215	c.163A>T	c.(163-165)ATT>TTT	p.I55F	PHKB_uc010vgi.1_Missense_Mutation_p.I48F|PHKB_uc002eeu.3_Missense_Mutation_p.I48F	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	55					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TTATTACAGAATTGGTGAGTA	0.353													5	19					0	0	0	0
NUDT21	11051	broad.mit.edu	37	16	56481891	56481891	+	Missense_Mutation	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:56481891T>C	uc002eja.2	-	2	274	c.127A>G	c.(127-129)ACC>GCC	p.T43A	NUDT21_uc002eiz.2_5'UTR	NM_007006	NP_008937	O43809	CPSF5_HUMAN	cleavage and polyadenylation specific factor 5	43	Necessary for RNA-binding.				mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|protein tetramerization|termination of RNA polymerase II transcription	centrosome|mRNA cleavage factor complex|paraspeckles	AU-rich element binding|histone deacetylase binding|hydrolase activity|mRNA binding|protein homodimerization activity				0						GTATAATTGGTAAGAGGGTAC	0.388													8	12					0	0	0	0
ZDHHC1	29800	broad.mit.edu	37	16	67434868	67434868	+	Silent	SNP	G	A	A	rs34689150	byFrequency	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr16:67434868G>A	uc010vjm.1	-	4	724	c.420C>T	c.(418-420)AAC>AAT	p.N140N		NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	140	DHHC-type.					integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		ACACATCCACGTTGCACAAGT	0.592													16	85					0	0	0	0
C17orf85	55421	broad.mit.edu	37	17	3719527	3719527	+	Missense_Mutation	SNP	T	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:3719527T>A	uc010ckl.1	-	11	1371	c.1348A>T	c.(1348-1350)ATC>TTC	p.I450F	C17orf85_uc002fwr.2_Missense_Mutation_p.I160F|C17orf85_uc002fwq.2_Missense_Mutation_p.I170F	NM_001114118	NP_001107590	Q53F19	CQ085_HUMAN	ELG protein isoform a	450							nucleotide binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (3;0.0725)		CGGTTTTTGATATTGCTTGAA	0.448													11	30					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7574034	7574034	+	Splice_Site	SNP	C	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:7574034C>A	uc002gim.2	-	10	1188	c.994_splice	c.e10-1	p.I332_splice	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_Splice_Site|TP53_uc010cng.1_Splice_Site|TP53_uc002gii.1_Splice_Site_p.I200_splice|TP53_uc010cnh.1_Splice_Site|TP53_uc010cni.1_Splice_Site|TP53_uc002gij.2_Splice_Site_p.I332_splice	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a						activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.?(4)|p.I332fs*49(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCCACGGATCTGCAGCAACA	0.403		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	19					2.17888e-05	2.25151e-05	1	0
EPX	8288	broad.mit.edu	37	17	56274399	56274399	+	Missense_Mutation	SNP	C	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:56274399C>A	uc002ivq.2	+	7	987	c.901C>A	c.(901-903)CAG>AAG	p.Q301K		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	301					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						AGTCCGCAACCAGATCAACGC	0.602													48	149					1.65492e-34	1.87692e-34	1	0
ACE	1636	broad.mit.edu	37	17	61574511	61574511	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:61574511G>A	uc002jau.1	+	25	3727	c.3705G>A	c.(3703-3705)GGG>GGA	p.G1235G	ACE_uc002jav.1_Silent_p.G661G|ACE_uc010ddv.1_Silent_p.G462G|ACE_uc010wpj.1_Silent_p.G620G|ACE_uc002jaw.1_Intron|ACE_uc010wpk.1_Silent_p.G440G	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1235	Extracellular (Potential).				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GCTCAGAAGGGCCCCTCCCAG	0.552													6	14					0	0	0	0
ABCA6	23460	broad.mit.edu	37	17	67080490	67080490	+	Missense_Mutation	SNP	A	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:67080490A>T	uc002jhw.1	-	34	4442	c.4267T>A	c.(4267-4269)TTT>ATT	p.F1423I		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1423	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CTCAGCACAAAACACAACTGC	0.517													58	144					0	0	0	0
DLGAP1	9229	broad.mit.edu	37	18	3534609	3534609	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr18:3534609G>C	uc002kmf.2	-	7	2129	c.2062C>G	c.(2062-2064)CGC>GGC	p.R688G	DLGAP1_uc010wyz.1_Missense_Mutation_p.R688G|DLGAP1_uc002kme.1_Missense_Mutation_p.R386G|DLGAP1_uc010dkn.2_Missense_Mutation_p.R396G|DLGAP1_uc010wyw.1_Missense_Mutation_p.R394G|DLGAP1_uc010wyx.1_Missense_Mutation_p.R410G|DLGAP1_uc010wyy.1_Missense_Mutation_p.R372G|DLGAP1_uc002kmg.2_Missense_Mutation_p.R386G	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	688					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GTGAACCTGCGGAAGCTTGGG	0.303													4	16					0	0	0	0
STARD6	147323	broad.mit.edu	37	18	51855808	51855808	+	Missense_Mutation	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr18:51855808T>C	uc010xdt.1	-	5	388	c.388A>G	c.(388-390)AAA>GAA	p.K130E		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	130	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TCCACACTTTTAGCTAAGAGA	0.313													27	45					0	0	0	0
MCOLN1	57192	broad.mit.edu	37	19	7589892	7589892	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:7589892C>T	uc002mgo.2	+	2	202	c.77C>T	c.(76-78)GCG>GTG	p.A26V	MCOLN1_uc010dvh.1_Missense_Mutation_p.A26V|MCOLN1_uc002mgp.2_5'UTR	NM_020533	NP_065394	Q9GZU1	MCLN1_HUMAN	mucolipin 1	26					calcium ion transport|cellular iron ion homeostasis|transferrin transport	integral to plasma membrane|late endosome membrane|lysosomal membrane	cation channel activity|iron ion transmembrane transporter activity			breast(1)	1						GGGACCCAGGCGGGGCCTTCA	0.622													6	16					0	0	0	0
LASS4	79603	broad.mit.edu	37	19	8321561	8321561	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:8321561G>A	uc002mjg.2	+	8	899	c.579G>A	c.(577-579)CTG>CTA	p.L193L	LASS4_uc002mjh.2_Silent_p.L142L|LASS4_uc002mji.2_Silent_p.L29L|LASS4_uc010dvz.2_Silent_p.L193L	NM_024552	NP_078828	Q9HA82	CERS4_HUMAN	LAG1 homolog, ceramide synthase 4	193	TLC.|Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(1)	1						ACCTCTCACTGCTAATCAGGC	0.577													23	43					0	0	0	0
ANGPTL6	83854	broad.mit.edu	37	19	10205476	10205476	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:10205476G>A	uc002mmx.1	-	3	839	c.721C>T	c.(721-723)CCC>TCC	p.P241S	ANGPTL6_uc002mmy.1_Missense_Mutation_p.P241S	NM_031917	NP_114123	Q8NI99	ANGL6_HUMAN	angiopoietin-like 6 precursor	241					angiogenesis|cell differentiation|signal transduction	extracellular space	receptor binding				0			OV - Ovarian serous cystadenocarcinoma(20;3.58e-08)|Epithelial(33;2.5e-05)|all cancers(31;5.96e-05)			GCAGGCATGGGAGAAGCCATG	0.587													32	87					0	0	0	0
SLC44A2	57153	broad.mit.edu	37	19	10745693	10745693	+	Silent	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:10745693C>T	uc002mpf.2	+	12	1138	c.999C>T	c.(997-999)CTC>CTT	p.L333L	SLC44A2_uc002mpe.3_Silent_p.L331L|SLC44A2_uc002mpg.1_Silent_p.L53L|SLC44A2_uc002mph.2_5'Flank	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	333	Helical; (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	TCTTGCTGCTCATCTTTCTCC	0.557													56	181					0	0	0	0
AXL	558	broad.mit.edu	37	19	41726618	41726618	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:41726618C>T	uc010ehj.2	+	2	353	c.163C>T	c.(163-165)CGG>TGG	p.R55W	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.R55W|AXL_uc010ehk.2_Missense_Mutation_p.R55W	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	55	Extracellular (Potential).|Interaction with GAS6.|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GGGCACCCTTCGGTGTCAGCT	0.632													5	23					0	0	0	0
ZNF480	147657	broad.mit.edu	37	19	52825507	52825507	+	Missense_Mutation	SNP	G	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:52825507G>T	uc010ydl.1	+	5	1074	c.1004G>T	c.(1003-1005)AGA>ATA	p.R335I	ZNF480_uc002pyv.2_Missense_Mutation_p.R258I|ZNF480_uc010ydm.1_Missense_Mutation_p.R292I|ZNF480_uc010epn.2_Missense_Mutation_p.R166I|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	335	C2H2-type 5; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		AATCATTGGAGAATTTATACT	0.393													9	29					1.12685e-05	1.19088e-05	1	0
ZNF331	55422	broad.mit.edu	37	19	54079994	54079994	+	Missense_Mutation	SNP	A	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:54079994A>T	uc002qbx.1	+	7	1614	c.180A>T	c.(178-180)AAA>AAT	p.K60N	ZNF331_uc002qby.1_Missense_Mutation_p.K60N|ZNF331_uc002qbz.1_Missense_Mutation_p.K60N|ZNF331_uc002qca.1_Missense_Mutation_p.K60N|ZNF331_uc010eqr.1_Missense_Mutation_p.K60N|ZNF331_uc002qcb.1_Missense_Mutation_p.K60N|ZNF331_uc002qcc.1_Missense_Mutation_p.K60N|ZNF331_uc002qcd.1_Missense_Mutation_p.K60N	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	60	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		CTACAGAAAAAAACATTCATG	0.373			T	?	follicular thyroid adenoma								14	18					0	0	0	0
NLRP5	126206	broad.mit.edu	37	19	56539108	56539108	+	Silent	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:56539108C>T	uc002qmj.2	+	7	1509	c.1509C>T	c.(1507-1509)GCC>GCT	p.A503A	NLRP5_uc002qmi.2_Silent_p.A484A	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	503	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GCCTGCACGCCGCTTTTGTGT	0.632													9	26					0	0	0	0
NRXN1	9378	broad.mit.edu	37	2	51255025	51255025	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr2:51255025G>A	uc010fbq.2	-	2	1864	c.387C>T	c.(385-387)TTC>TTT	p.F129F	NRXN1_uc002rxe.3_Silent_p.F129F|NRXN1_uc002rxd.1_Silent_p.F129F	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCTGGTCGATGAAGAGCGTGG	0.672													7	30					0	0	0	0
MAT2A	4144	broad.mit.edu	37	2	85770060	85770060	+	Missense_Mutation	SNP	A	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr2:85770060A>G	uc002spr.2	+	8	1111	c.988A>G	c.(988-990)ATC>GTC	p.I330V	MAT2A_uc010ysr.1_Missense_Mutation_p.I330V|MAT2A_uc010fgk.2_Missense_Mutation_p.I304V|MAT2A_uc010fgl.2_Missense_Mutation_p.I267V	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha	330					methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TCCATTATCTATCTCCATTTT	0.388													16	42					0	0	0	0
VWA3B	200403	broad.mit.edu	37	2	98744737	98744737	+	Silent	SNP	T	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr2:98744737T>A	uc002syo.2	+	6	1002	c.738T>A	c.(736-738)GTT>GTA	p.V246V	VWA3B_uc010yvh.1_Silent_p.V96V|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Silent_p.V246V|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	246										ovary(3)|large_intestine(2)|skin(1)	6						TGGGGGATGTTCCTGAAGAAT	0.498													39	91					0	0	0	0
CLASP1	23332	broad.mit.edu	37	2	122227521	122227521	+	Missense_Mutation	SNP	T	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr2:122227521T>C	uc002tnc.2	-	9	1118	c.728A>G	c.(727-729)GAT>GGT	p.D243G	CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.D243G|CLASP1_uc010yza.1_Missense_Mutation_p.D243G|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Missense_Mutation_p.D243G	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	243					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					AGAATCTTCATCGTCGAAATT	0.368													20	37					0	0	0	0
HOXD3	3232	broad.mit.edu	37	2	177036315	177036315	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr2:177036315G>A	uc002ukt.1	+	3	788	c.612G>A	c.(610-612)GCG>GCA	p.A204A		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	204	Homeobox.				anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		ACACGAGCGCGCAGCTGGTGG	0.637													15	39					0	0	0	0
WDR6	11180	broad.mit.edu	37	3	49052506	49052506	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr3:49052506C>T	uc003cvj.2	+	6	3379	c.3241C>T	c.(3241-3243)CTC>TTC	p.L1081F	WDR6_uc011bby.1_Missense_Mutation_p.L529F|WDR6_uc010hkn.2_Missense_Mutation_p.L1025F|WDR6_uc011bbz.1_Missense_Mutation_p.L1000F|DALRD3_uc003cvk.1_3'UTR|DALRD3_uc003cvl.1_3'UTR|DALRD3_uc003cvm.1_3'UTR|DALRD3_uc010hko.1_3'UTR	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	1051	WD 16.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		TGTGACAGGCCTCAAGATCCT	0.567													11	26					0	0	0	0
FAM86D	692099	broad.mit.edu	37	3	75477000	75477000	+	Silent	SNP	T	C	C	rs137877849	by1000genomes	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr3:75477000T>C	uc003dpp.3	-	5	506	c.147A>G	c.(145-147)ACA>ACG	p.T49T	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_5'UTR|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						TGACCAGGCCTGTGGTACCAT	0.592													4	16					0	0	0	0
ESYT3	83850	broad.mit.edu	37	3	138180986	138180986	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr3:138180986C>T	uc003esk.2	+	8	1079	c.853C>T	c.(853-855)CGT>TGT	p.R285C	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	285						integral to membrane|plasma membrane					0						GCTGCCCAACCGTGTGACTGT	0.607													21	67					0	0	0	0
RASA2	5922	broad.mit.edu	37	3	141328287	141328287	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr3:141328287G>C	uc003etz.1	+	22	2251	c.2251G>C	c.(2251-2253)GAT>CAT	p.D751H	RASA2_uc010huq.1_Missense_Mutation_p.D755H|RASA2_uc003eua.1_Missense_Mutation_p.D752H	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	751					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						CATCCAAATAGATATTGATGA	0.294													18	46					0	0	0	0
UGDH	7358	broad.mit.edu	37	4	39511382	39511382	+	Missense_Mutation	SNP	A	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr4:39511382A>C	uc003guk.1	-	6	1125	c.809T>G	c.(808-810)GTT>GGT	p.V270G	UGDH_uc011byp.1_Missense_Mutation_p.V173G|UGDH_uc003gul.1_Missense_Mutation_p.V203G	NM_003359	NP_003350	O60701	UGDH_HUMAN	UDP-glucose dehydrogenase	270	Substrate binding.				glycosaminoglycan biosynthetic process|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	electron carrier activity|NAD binding|UDP-glucose 6-dehydrogenase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4					NADH(DB00157)	GAATTTACCAACACTGGCTTT	0.254													9	46					0	0	0	0
CCT5	22948	broad.mit.edu	37	5	10254818	10254818	+	Missense_Mutation	SNP	G	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:10254818G>T	uc003jeq.2	+	3	370	c.199G>T	c.(199-201)GAT>TAT	p.D67Y	CCT5_uc011cmq.1_Intron|CCT5_uc003jer.2_Missense_Mutation_p.D67Y|CCT5_uc010its.2_Missense_Mutation_p.D67Y|CCT5_uc011cmr.1_Intron|CCT5_uc011cms.1_Missense_Mutation_p.D29Y|CCT5_uc011cmt.1_Intron	NM_012073	NP_036205	P48643	TCPE_HUMAN	chaperonin containing TCP1, subunit 5 (epsilon)	67					'de novo' posttranslational protein folding|response to virus	microtubule organizing center|nucleolus	ATP binding|unfolded protein binding			ovary(2)	2						TAAGGATGGAGATGTGACTGT	0.413													47	54					1.59911e-31	1.79178e-31	1	0
MIR887	100126347	broad.mit.edu	37	5	15935359	15935359	+	RNA	SNP	G	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:15935359G>T	hsa-mir-887|MI0005562	+			c.69G>T			FBXL7_uc003jfn.1_Intron																	0						ccatcccgaggctttgcacag	0													16	59					3.41278e-10	3.73399e-10	1	0
SPEF2	79925	broad.mit.edu	37	5	35704673	35704673	+	Missense_Mutation	SNP	A	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:35704673A>G	uc003jjo.2	+	17	2527	c.2416A>G	c.(2416-2418)AAA>GAA	p.K806E	SPEF2_uc003jjq.3_Missense_Mutation_p.K801E|SPEF2_uc003jjp.1_Missense_Mutation_p.K292E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	806					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATTGTCCTATAAAACTGCTCA	0.323													26	26					0	0	0	0
RICTOR	253260	broad.mit.edu	37	5	38967297	38967297	+	Missense_Mutation	SNP	A	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:38967297A>T	uc003jlp.2	-	14	1208	c.1184T>A	c.(1183-1185)ATA>AAA	p.I395K	RICTOR_uc003jlo.2_Missense_Mutation_p.I395K|RICTOR_uc010ivf.2_Missense_Mutation_p.I110K	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	395					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					TGCAGAGAGTATCAGTGCCAA	0.299													126	136					0	0	0	0
ETF1	2107	broad.mit.edu	37	5	137847182	137847182	+	Missense_Mutation	SNP	G	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:137847182G>T	uc003ldc.3	-	7	1009	c.844C>A	c.(844-846)CAA>AAA	p.Q282K	ETF1_uc011cyv.1_Missense_Mutation_p.Q268K|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_Missense_Mutation_p.Q249K|ETF1_uc010jey.1_Missense_Mutation_p.Q88K	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	282					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TTCTTCTCTTGAATGAATTTC	0.254													23	20					7.33532e-06	7.8412e-06	1	0
SPINK5	11005	broad.mit.edu	37	5	147503463	147503463	+	Missense_Mutation	SNP	C	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:147503463C>G	uc003lox.2	+	27	2679	c.2606C>G	c.(2605-2607)CCT>CGT	p.P869R	SPINK5_uc010jgr.2_Missense_Mutation_p.P850R|SPINK5_uc003low.2_Missense_Mutation_p.P869R|SPINK5_uc003loy.2_Missense_Mutation_p.P869R	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	869	Kazal-like 13.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAATAACCCTGTTCGAGGC	0.398													14	20					0	0	0	0
FAT2	2196	broad.mit.edu	37	5	150928976	150928976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:150928976G>A	uc003lue.3	-	8	4682	c.4669C>T	c.(4669-4671)CAG>TAG	p.Q1557*	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1557	Extracellular (Potential).|Cadherin 14.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TAATGGAGCTGAGTGAAGCGG	0.572													20	24					0	0	0	0
BAI3	577	broad.mit.edu	37	6	69949024	69949024	+	Missense_Mutation	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr6:69949024G>A	uc003pev.3	+	20	3168	c.2720G>A	c.(2719-2721)CGC>CAC	p.R907H	BAI3_uc010kak.2_Missense_Mutation_p.R907H|BAI3_uc011dxx.1_Missense_Mutation_p.R113H|BAI3_uc003pex.1_Missense_Mutation_p.R37H	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	907	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AGGTACATACGCTCTGAGAGA	0.368													33	101					0	0	0	0
LCA5	167691	broad.mit.edu	37	6	80197508	80197508	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr6:80197508C>T	uc003pix.2	-	8	1742	c.1307G>A	c.(1306-1308)TGG>TAG	p.W436*	LCA5_uc003piy.2_Nonsense_Mutation_p.W436*	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	436	Potential.				protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		TCCAGTTTCCCACTCTGGCTT	0.348													16	39					0	0	0	0
EPHA7	2045	broad.mit.edu	37	6	93965560	93965560	+	Missense_Mutation	SNP	C	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr6:93965560C>A	uc003poe.2	-	13	2609	c.2368G>T	c.(2368-2370)GTC>TTC	p.V790F	EPHA7_uc003pof.2_Missense_Mutation_p.V785F|EPHA7_uc011eac.1_Missense_Mutation_p.V786F	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	790	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GTTGTATAGACAGCTTCTGGA	0.383													14	42					2.32078e-09	2.50969e-09	1	0
SIM1	6492	broad.mit.edu	37	6	100896374	100896374	+	Missense_Mutation	SNP	G	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr6:100896374G>C	uc003pqj.3	-	6	931	c.724C>G	c.(724-726)CTC>GTC	p.L242V	SIM1_uc010kcu.2_Missense_Mutation_p.L242V	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	242	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AGAAAGATGAGCTTCATGTCC	0.607													7	21					0	0	0	0
GIMAP2	26157	broad.mit.edu	37	7	150389615	150389615	+	Missense_Mutation	SNP	A	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr7:150389615A>G	uc003who.2	+	3	329	c.241A>G	c.(241-243)ATG>GTG	p.M81V	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	81						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACACCAGATATGTTTTCTTG	0.368													10	22					0	0	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20074763	20074763	+	Silent	SNP	A	G	G	rs150784341	byFrequency	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr8:20074763A>G	uc003wzp.2	+	12	1408	c.1194A>G	c.(1192-1194)CTA>CTG	p.L398L	ATP6V1B2_uc003wzq.1_5'Flank	NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	398					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TGCCCTCACTATCACGGTTAA	0.373													26	121					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100286454	100286454	+	Silent	SNP	T	G	G			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr8:100286454T>G	uc003yiv.2	+	18	2655	c.2544T>G	c.(2542-2544)ACT>ACG	p.T848T	VPS13B_uc003yiw.2_Silent_p.T848T|VPS13B_uc003yiu.1_Silent_p.T848T|VPS13B_uc003yix.1_Silent_p.T319T	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	848					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CCCTGCCAACTCTTGAGGGCT	0.378													47	83					0	0	0	0
FAM83H	286077	broad.mit.edu	37	8	144809798	144809798	+	Silent	SNP	G	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr8:144809798G>A	uc003yzk.2	-	5	1902	c.1833C>T	c.(1831-1833)GAC>GAT	p.D611D	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	611					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CCAGCACGTCGTCTTCGTAAG	0.731													10	7					0	0	0	0
GNL3L	54552	broad.mit.edu	37	X	54584985	54584985	+	Silent	SNP	C	T	T	rs141548321	byFrequency	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chrX:54584985C>T	uc004dth.1	+	15	1702	c.1563C>T	c.(1561-1563)GAC>GAT	p.D521D	GNL3L_uc004dti.2_RNA	NM_019067	NP_061940	Q9NVN8	GNL3L_HUMAN	guanine nucleotide binding protein-like 3	521					ribosome biogenesis	nucleolus	GTP binding			ovary(1)	1						GCTCAGTGGACCGCCGCTCAG	0.557													5	14					0	0	0	0
MAGT1	84061	broad.mit.edu	37	X	77131009	77131009	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chrX:77131009C>T	uc004fof.2	-	2	346	c.284G>A	c.(283-285)CGC>CAC	p.R95H	MAGT1_uc004fog.3_RNA|MAGT1_uc004ect.3_Missense_Mutation_p.R95H	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	63					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						TTTCACAAGGCGACGGAACTT	0.418													23	97					0	0	0	0
ZFY	7544	broad.mit.edu	37	Y	2829238	2829238	+	Missense_Mutation	SNP	C	T	T			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chrY:2829238C>T	uc004fqj.2	+	3	506	c.185C>T	c.(184-186)TCA>TTA	p.S62L	ZFY_uc010nwd.1_Missense_Mutation_p.S62L|ZFY_uc011nan.1_Intron|ZFY_uc010nwe.2_Missense_Mutation_p.S36L	NM_003411	NP_003402	P08048	ZFY_HUMAN	zinc finger protein, Y-linked isoform 1	62					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GACCCAGACTCAGTTGTAATC	0.373													13	47					0	0	0	0
KPRP	448834	broad.mit.edu	37	1	152733723	152733724	+	Frame_Shift_Ins	INS	-	C	C			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr1:152733723_152733724insC	uc001fal.1	+	2	1717_1718	c.1659_1660insC	c.(1657-1662)GAGCGGfs	p.E553fs		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	553_554						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTTTCCAGAGCGGAGGGGTCA	0.540													---	---	---							
ZEB1	6935	broad.mit.edu	37	10	31816010	31816012	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:31816010_31816012delGAG	uc001ivs.3	+	9	3256_3258	c.3193_3195delGAG	c.(3193-3195)GAGdel	p.E1071del	ZEB1_uc001ivr.3_In_Frame_Del_p.E853del|ZEB1_uc010qee.1_In_Frame_Del_p.E853del|ZEB1_uc010qef.1_In_Frame_Del_p.E853del|ZEB1_uc001ivt.3_In_Frame_Del_p.E853del|ZEB1_uc001ivu.3_In_Frame_Del_p.E1072del|ZEB1_uc001ivv.3_In_Frame_Del_p.E1051del|ZEB1_uc010qeh.1_In_Frame_Del_p.E1004del|ZEB1_uc009xlp.2_In_Frame_Del_p.E1055del	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	1071	Glu-rich (acidic).				cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ggatgaggaagaggaggaggagg	0.118													---	---	---							
Unknown	0	broad.mit.edu	37	10	42385340	42385362	+	IGR	DEL	GAATTATCTAATGCAATCGAATA	-	-	rs66510027		TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:42385340_42385362delGAATTATCTAATGCAATCGAATA								None (None upstream) : LOC441666 (441953 downstream)																							gaatcgaagggaattatctaatgcaatcgaatagaattatcga	0.000													---	---	---							
COL17A1	1308	broad.mit.edu	37	10	105837245	105837246	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr10:105837245_105837246delAG	uc001kxr.2	-	4	305_306	c.136_137delCT	c.(136-138)CTTfs	p.L46fs	COL17A1_uc010qqv.1_Frame_Shift_Del_p.L46fs|COL17A1_uc009xxp.1_Frame_Shift_Del_p.L46fs	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	46	Cytoplasmic (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CCCTCCACCAAGAGAGGCTGTT	0.545													---	---	---							
MLL2	8085	broad.mit.edu	37	12	49418616	49418617	+	Frame_Shift_Ins	INS	-	A	A			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr12:49418616_49418617insA	uc001rta.3	-	49	15897_15898	c.15897_15898insT	c.(15895-15900)CATGCCfs	p.H5299fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5299_5300	FYR C-terminal.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CGAAGCACGGCATGCACCGTCA	0.559			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			---	---	---							
Unknown	0	broad.mit.edu	37	12	110072327	110072328	+	IGR	INS	-	ACC	ACC	rs147833484	by1000genomes	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr12:110072327_110072328insACC								MVK (37257 upstream) : C12orf34 (79862 downstream)																							ccaccaccactaccaccaccac	0.020													---	---	---							
FAM101A	144347	broad.mit.edu	37	12	124798924	124798926	+	In_Frame_Del	DEL	CAT	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr12:124798924_124798926delCAT	uc001ugd.1	+	3	504_506	c.261_263delCAT	c.(259-264)ACCATC>ACC	p.I89del	FAM101A_uc001uge.1_In_Frame_Del_p.I89del	NM_181709	NP_859060	Q6ZTI6	F101A_HUMAN	hypothetical protein LOC144347	170											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;2.38e-05)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-05)|all cancers(50;0.000361)|BRCA - Breast invasive adenocarcinoma(302;0.059)		GCAGCACCACCATCATCTTCCCC	0.685													---	---	---							
Unknown	0	broad.mit.edu	37	13	44544706	44544706	+	IGR	DEL	G	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr13:44544706delG								C13orf31 (76639 upstream) : LOC121838 (51765 downstream)																							TCCCCCAAGTGGTGCTTCCTG	0.577													---	---	---							
ZNF219	51222	broad.mit.edu	37	14	21558826	21558828	+	In_Frame_Del	DEL	GGG	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr14:21558826_21558828delGGG	uc001vzr.2	-	5	2457_2459	c.2036_2038delCCC	c.(2035-2040)CCCCAG>CAG	p.P679del	ZNF219_uc001vzs.2_In_Frame_Del_p.P679del|ZNF219_uc010aik.1_In_Frame_Del_p.P679del	NM_016423	NP_057507	Q9P2Y4	ZN219_HUMAN	zinc finger protein 219	679					negative regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|histamine receptor activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;9.86e-11)|Epithelial(56;1.27e-08)|all cancers(55;6.06e-08)	GBM - Glioblastoma multiforme(265;0.0191)		GCGTCAGCCTGGGGTGGCCGGCG	0.700													---	---	---							
POLDIP2	26073	broad.mit.edu	37	17	26684390	26684391	+	Splice_Site	INS	-	C	C	rs148075904	by1000genomes	TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr17:26684390_26684391insC	uc002haz.2	-	3	211	c.79_splice	c.e3+0	p.P27_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCACAGAGCGGCTTTGCCACCG	0.762													---	---	---							
RPL18	6141	broad.mit.edu	37	19	49118662	49118663	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr19:49118662_49118663insAA	uc002pjq.1	-	7	566_567	c.533_534insTT	c.(532-534)AGAfs	p.R178fs	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Frame_Shift_Ins_p.R126fs	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	178					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		CCCGTCGGCCTCTGGCACGCTC	0.559													---	---	---							
SLCO2A1	6578	broad.mit.edu	37	3	133667421	133667421	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr3:133667421delT	uc003eqa.3	-	8	1338	c.1064delA	c.(1063-1065)AAGfs	p.K355fs	SLCO2A1_uc003eqb.3_Frame_Shift_Del_p.K279fs|SLCO2A1_uc011blv.1_Frame_Shift_Del_p.K174fs	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	355	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GCCATACTGCTTCTCCAGGAA	0.597													---	---	---							
Unknown	0	broad.mit.edu	37	5	115106723	115106723	+	IGR	DEL	A	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:115106723delA								TMED7-TICAM2 (144853 upstream) : CDO1 (33709 downstream)																							TTTCATTCTCAAAAAAAAAAA	0.353													---	---	---							
NSD1	64324	broad.mit.edu	37	5	176639004	176639004	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr5:176639004delG	uc003mfr.3	+	5	3742	c.3604delG	c.(3604-3606)GAGfs	p.E1202fs	NSD1_uc003mft.3_Frame_Shift_Del_p.E933fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.E1099fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.E850fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1202					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GGGGCGGGATGAGTTTCCAGA	0.468			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			---	---	---							
Unknown	0	broad.mit.edu	37	9	78917033	78917033	+	IGR	DEL	T	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr9:78917033delT								PCSK5 (108695 upstream) : RFK (83400 downstream)																							AACTAAACACTTTTTTTTTTA	0.229													---	---	---							
DNM1	1759	broad.mit.edu	37	9	130982587	130982587	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chr9:130982587delG	uc011mau.1	+	6	903	c.816delG	c.(814-816)ATGfs	p.M272fs	DNM1_uc010mxr.2_Frame_Shift_Del_p.M272fs|DNM1_uc011mat.1_Frame_Shift_Del_p.M272fs	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	272					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						CTGACCGTATGGGCACGCCCT	0.522													---	---	---							
Unknown	0	broad.mit.edu	37	Y	10028735	10028737	+	IGR	DEL	TTC	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chrY:10028735_10028737delTTC								TTTY22 (377881 upstream) : None (None downstream)																							TTTCTTCCTATTCTTCTTGGTTG	0.360													---	---	---							
Unknown	0	broad.mit.edu	37	Y	13314549	13314549	+	IGR	DEL	G	-	-			TCGA-HD-7917-01A-11D-2229-08	TCGA-HD-7917-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	451948c9-3d16-4771-b006-28b98580db2c	778ebe8c-c5a3-48df-b092-2bff7b95c8ba	g.chrY:13314549delG								None (None upstream) : None (None downstream)																							TGCAGTCGGCGAAGGCCTGGT	0.662													---	---	---							
