Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	G	G	rs58074988		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:12887606C>G	uc001auk.2	-	3	447	c.251G>C	c.(250-252)TGC>TCC	p.C84S		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	84											0						ATTGAGGAAGCACCCATGGGC	0.483000													6	559					0	0	0.058154	0	0
EPHA8	2046	broad.mit.edu	37	1	22903356	22903356	+	Missense_Mutation	SNP	G	C	C	rs139777546	byFrequency	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:22903356G>C	uc001bfx.1	+	3	931	c.806G>C	c.(805-807)CGG>CCG	p.R269P	EPHA8_uc001bfw.2_Missense_Mutation_p.R269P	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	269	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TACGAGGAGCGGCGGGATGCC	0.677000													17	34					0	0	0.049695	0	0
PIGV	55650	broad.mit.edu	37	1	27121059	27121059	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:27121059C>T	uc001bmz.2	+	3	865	c.534C>T	c.(532-534)TTC>TTT	p.F178F	PIGV_uc001bmy.2_Intron|PIGV_uc009vso.2_Silent_p.F178F|PIGV_uc010ofg.1_Intron|PIGV_uc001bna.2_Silent_p.F178F	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	178	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		TCCTGACATTCAGTGCCATGG	0.562000													52	111					0	0	0.139131	0	0
SLC9A1	6548	broad.mit.edu	37	1	27428600	27428600	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:27428600C>T	uc001bnm.2	-	9	2468	c.1842G>A	c.(1840-1842)CTG>CTA	p.L614L	SLC9A1_uc001bnl.2_Silent_p.L118L|SLC9A1_uc010ofk.1_Silent_p.L275L	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	614	Cytoplasmic (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	GCTCGGAAGGCAGGGACTTGG	0.582000													65	158					0	0	0.139131	0	0
EIF2C1	26523	broad.mit.edu	37	1	36359988	36359988	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:36359988C>T	uc001bzl.2	+	7	1070	c.857C>T	c.(856-858)CCT>CTT	p.P286L	EIF2C1_uc001bzk.2_Missense_Mutation_p.P211L|EIF2C1_uc009vuy.2_5'Flank	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	286	PAZ.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACCCGTCGCCCTGCTAGCCAT	0.532000													22	41					0	0	0.083992	0	0
MACF1	23499	broad.mit.edu	37	1	39907695	39907695	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:39907695T>G	uc010oiu.1	+	40	14204	c.14073T>G	c.(14071-14073)AAT>AAG	p.N4691K	MACF1_uc010ois.1_Missense_Mutation_p.N4189K	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CTGACCTCAATACTGTTAAAG	0.353000													10	29					0	0	0.069234	0	0
MCOLN3	55283	broad.mit.edu	37	1	85491700	85491700	+	Silent	SNP	A	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:85491700A>G	uc001dkp.2	-	9	1110	c.1017T>C	c.(1015-1017)AAT>AAC	p.N339N	MCOLN3_uc001dko.2_5'Flank|MCOLN3_uc001dkq.2_Silent_p.N283N|MCOLN3_uc001dkr.2_3'UTR|MCOLN3_uc001dks.3_Silent_p.N184N	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	339	Helical; (Potential).					integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		TGTACCATCCATTGACAAATT	0.333000													12	24					0	0	0.093190	0	0
ATP1A2	477	broad.mit.edu	37	1	160105304	160105304	+	Silent	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:160105304C>A	uc001fvc.2	+	16	2328	c.2196C>A	c.(2194-2196)GGC>GGA	p.G732G	ATP1A2_uc001fvb.2_Silent_p.G732G|ATP1A2_uc001fvd.2_Silent_p.G468G	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	732	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			TTGCCATGGGCATCTCTGGCT	0.602000													85	114					6.71967e-41	8.61496e-41	0.139131	1	0
IRF6	3664	broad.mit.edu	37	1	209964089	209964089	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:209964089G>C	uc001hhq.1	-	7	1074	c.811C>G	c.(811-813)CTG>GTG	p.L271V	IRF6_uc010psm.1_Missense_Mutation_p.L176V|IRF6_uc009xct.1_Missense_Mutation_p.L271V	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	271					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ACCTGCTCCAGGCTGACGGGA	0.572000										HNSCC(57;0.16)			60	80					0	0	0.139131	0	0
PTEN	5728	broad.mit.edu	37	10	89624275	89624275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr10:89624275C>T	uc001kfb.2	+	2	1080	c.49C>T	c.(49-51)CAA>TAA	p.Q17*	KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	17	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(13)|p.0?(12)|p.Q17*(5)|p.Q17del(2)|p.Q17P(1)|p.R14fs*26(1)|p.Y16fs*21(1)|p.N12fs*6(1)|p.R14_D22del(1)|p.Y16fs*1(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AAGGAGATATCAAGAGGATGG	0.478000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			5	178					0	0	0.021553	0	0
METTL10	399818	broad.mit.edu	37	10	126477651	126477651	+	Silent	SNP	A	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr10:126477651A>G	uc001lhy.1	-	3	289	c.252T>C	c.(250-252)CTT>CTC	p.L84L	FAM53B_uc001lhu.1_5'UTR|METTL10_uc001lhz.1_5'UTR|METTL10_uc001lia.1_5'UTR	NM_212554	NP_997719	Q5JPI9	MTL10_HUMAN	methyltransferase like 10	84							methyltransferase activity				0		all_lung(145;0.0186)|Lung NSC(174;0.0295)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.101)|COAD - Colon adenocarcinoma(40;0.111)		TTCCAATATCAAGCACTGAAG	0.348000													36	62					0	0	0.064281	0	0
TRIM3	10612	broad.mit.edu	37	11	6486812	6486812	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:6486812C>T	uc001mdh.2	-	3	501	c.114G>A	c.(112-114)CTG>CTA	p.L38L	TRIM3_uc001mdi.2_Silent_p.L38L|TRIM3_uc010raj.1_Intron|TRIM3_uc009yfd.2_Silent_p.L38L|TRIM3_uc010rak.1_Silent_p.L38L|TRIM3_uc001mdj.2_5'UTR	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	38	RING-type.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAAGGTGTGCAGGCAAGGAA	0.607000													91	183					0	0	0.139131	0	0
ZBTB3	79842	broad.mit.edu	37	11	62519739	62519739	+	Silent	SNP	G	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:62519739G>A	uc001nuz.2	-	2	1670	c.1548C>T	c.(1546-1548)TAC>TAT	p.Y516Y		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	516	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						GGATGTGGCGGTAGAGGTCCC	0.617000													4	104					0	0	0.009096	0	0
OTUB1	55611	broad.mit.edu	37	11	63756155	63756155	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:63756155G>T	uc001nyf.1	+	3	754	c.150G>T	c.(148-150)GAG>GAT	p.E50D	OTUB1_uc001nyg.1_Missense_Mutation_p.S24I|OTUB1_uc010rmz.1_Missense_Mutation_p.E87D|OTUB1_uc010rna.1_5'UTR|OTUB1_uc009ypa.2_Intron|OTUB1_uc009ypb.1_Missense_Mutation_p.E20D	NM_017670	NP_060140	Q96FW1	OTUB1_HUMAN	otubain 1	50					protein K48-linked deubiquitination	cytoplasm	NEDD8-specific protease activity|omega peptidase activity|ubiquitin binding|ubiquitin-specific protease activity			breast(1)	1						TGGTGTCAGAGCGGCTGGAGC	0.537000													104	235					4.96818e-67	6.62424e-67	0.139131	1	0
OR8G2	26492	broad.mit.edu	37	11	124096115	124096115	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:124096115C>T	uc010saf.1	+	1	718	c.718C>T	c.(718-720)CGC>TGC	p.R240C		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	240						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		CAGCATCCTCCGCATTCGCTC	0.483000													4	31					0	0	0.119110	0	0
IGSF9B	22997	broad.mit.edu	37	11	133814179	133814179	+	Silent	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:133814179C>A	uc001qgx.3	-	3	576	c.345G>T	c.(343-345)GTG>GTT	p.V115V	IGSF9B_uc001qgz.2_RNA	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	115	Extracellular (Potential).|Ig-like 1.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CCAGCATGAGCACTTTGCACT	0.577000													29	30					1.74197e-06	2.07378e-06	0.116897	1	0
CLEC1A	51267	broad.mit.edu	37	12	10233939	10233939	+	Silent	SNP	C	T	T	rs147494819	by1000genomes	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr12:10233939C>T	uc001qxb.2	-	3	372	c.288G>A	c.(286-288)ACG>ACA	p.T96T	CLEC1A_uc009zhf.2_Silent_p.T8T|CLEC1A_uc001qxc.2_Silent_p.T8T|CLEC1A_uc001qxd.2_Silent_p.T53T|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	96	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						ACTCTTGGGACGTATTTCCTA	0.423000													8	137					0	0	0.047766	0	0
RPL13AP20	387841	broad.mit.edu	37	12	13028751	13028751	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr12:13028751G>C	uc010sho.1	+	1	341	c.319G>C	c.(319-321)GGC>CGC	p.G107R		NR_003932				SubName: Full=Ribosomal protein L13a variant; Flags: Fragment;												0						GGTGTTTGACGGCATCCCACC	0.612000													3	21					0	0	0.009096	0	0
CEP290	80184	broad.mit.edu	37	12	88524957	88524957	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr12:88524957G>T	uc001tar.2	-	7	824	c.480C>A	c.(478-480)AGC>AGA	p.S160R	CEP290_uc001tat.2_5'Flank|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	160	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TTCTTAATTTGCTGTTTTCAT	0.244000													2	1					0.0016	0.00177778	0.115264	1	0
KCTD10	83892	broad.mit.edu	37	12	109889416	109889416	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr12:109889416G>T	uc001toi.1	-	7	1014	c.926C>A	c.(925-927)GCC>GAC	p.A309D	KCTD10_uc001toh.1_RNA|KCTD10_uc009zvi.1_Missense_Mutation_p.A283D|KCTD10_uc001toj.1_Missense_Mutation_p.A318D|KCTD10_uc001tok.1_Missense_Mutation_p.A128D	NM_031954	NP_114160	Q9H3F6	BACD3_HUMAN	potassium channel tetramerisation domain	309					proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|nucleus|voltage-gated potassium channel complex	voltage-gated potassium channel activity				0						GTGGAGGTGGGCCCGGTCATC	0.721000													8	128					0.000274275	0.000315259	0.047766	1	0
DOCK9	23348	broad.mit.edu	37	13	99481713	99481713	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr13:99481713T>C	uc001vnt.2	-	43	4802	c.4747A>G	c.(4747-4749)ACC>GCC	p.T1583A	DOCK9_uc001vnw.2_Missense_Mutation_p.T1582A|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.T1583A|DOCK9_uc001vnq.2_Missense_Mutation_p.T155A|DOCK9_uc001vnr.2_Missense_Mutation_p.T226A|DOCK9_uc010tin.1_Missense_Mutation_p.T226A|DOCK9_uc001vns.2_Missense_Mutation_p.T155A|DOCK9_uc010tio.1_Missense_Mutation_p.T275A|DOCK9_uc010tip.1_Missense_Mutation_p.T293A|DOCK9_uc001vnu.1_Missense_Mutation_p.T155A|DOCK9_uc010tiq.1_Missense_Mutation_p.T561A	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1583	DHR-2.				blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					ATCTGGGCGGTGGCCATTAGC	0.542000													11	41					0	0	0.093190	0	0
ATP11A	23250	broad.mit.edu	37	13	113516824	113516825	+	Missense_Mutation	DNP	GC	AG	AG	rs140812688		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr13:113516824_113516825GC>AG	uc001vsi.3	+	25	3014_3015	c.2926_2927GC>AG	c.(2926-2928)GCA>AGA	p.A976R	ATP11A_uc001vsj.3_Missense_Mutation_p.A976R|ATP11A_uc010ago.2_RNA	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	976	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ACTGTTTGACGCACTGGTGTTC	0.535000													33	46					0	0	0.115264	0	0
PPM1A	5494	broad.mit.edu	37	14	60749544	60749544	+	Silent	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr14:60749544G>T	uc010apn.2	+	3	525	c.123G>T	c.(121-123)ACG>ACT	p.T41T	PPM1A_uc001xew.3_Silent_p.T114T|PPM1A_uc001xex.3_Silent_p.T41T|PPM1A_uc001xey.3_Silent_p.T41T	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	41					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		ATGCACATACGGCTGTGATCG	0.498000													4	167					0.00909568	0.00988661	0.009096	1	0
ZFYVE26	23503	broad.mit.edu	37	14	68282659	68282659	+	Nonsense_Mutation	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr14:68282659C>A	uc001xka.2	-	2	161	c.22G>T	c.(22-24)GAG>TAG	p.E8*	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Nonsense_Mutation_p.E8*|ZFYVE26_uc010tta.1_Nonsense_Mutation_p.E8*	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	8					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		GCAGCTTCCTCTTTTCCAAAT	0.478000													22	34					0.000295444	0.000335731	0.069288	1	0
DICER1	23405	broad.mit.edu	37	14	95556880	95556880	+	Silent	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr14:95556880G>T	uc001ydw.2	-	28	5906	c.5724C>A	c.(5722-5724)GCC>GCA	p.A1908A	DICER1_uc010avh.1_Silent_p.A806A|DICER1_uc001ydv.2_Silent_p.A1898A|DICER1_uc001ydx.2_Silent_p.A1908A	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1908	DRBM.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		GGCTTCGGAGGGCTCTTCTTG	0.413000			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				34	49					7.11191e-15	8.78013e-15	0.054565	1	0
SIVA1	10572	broad.mit.edu	37	14	105222013	105222013	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr14:105222013C>T	uc001yph.2	+	2	234	c.165C>T	c.(163-165)GAC>GAT	p.D55D	INF2_uc010tyi.1_Intron|SIVA1_uc010tyj.1_Silent_p.D55D|SIVA1_uc001ypg.1_Silent_p.D55D|SIVA1_uc001ypi.2_Intron	NM_006427	NP_006418	O15304	SIVA_HUMAN	CD27-binding (Siva) protein isoform 1	55	Interaction with BCL2L1 isoform Bcl-x(L) and inhibition of BCL2L1 anti-apoptotic activity.				activation of caspase activity by cytochrome c|activation-induced cell death of T cells|apoptosis|induction of apoptosis|interspecies interaction between organisms|negative regulation of anti-apoptosis|negative regulation of NF-kappaB transcription factor activity	cytoplasm|mitochondrion|nucleoplasm|nucleus	caspase activator activity|CD27 receptor binding|metal ion binding|viral receptor activity|zinc ion binding				0		all_cancers(154;0.14)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.173)		CCTACCTGGACCACGTGTGGG	0.607000													78	183					0	0	0.139131	0	0
TP53BP1	7158	broad.mit.edu	37	15	43733777	43733777	+	Silent	SNP	A	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr15:43733777A>G	uc001zrs.2	-	15	3178	c.3030T>C	c.(3028-3030)CCT>CCC	p.P1010P	TP53BP1_uc010udp.1_Silent_p.P1010P|TP53BP1_uc001zrq.3_Silent_p.P1015P|TP53BP1_uc001zrr.3_Silent_p.P1015P|TP53BP1_uc010udq.1_Silent_p.P1015P	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1010					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CACCAGTTGCAGGCTCTGAAT	0.388000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					4	218					0	0	0.009096	0	0
TMC5	79838	broad.mit.edu	37	16	19498328	19498328	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr16:19498328T>G	uc002dgc.3	+	16	3174	c.2425T>G	c.(2425-2427)TTC>GTC	p.F809V	TMC5_uc010vaq.1_Missense_Mutation_p.F757V|TMC5_uc002dgb.3_Missense_Mutation_p.F809V|TMC5_uc010var.1_Missense_Mutation_p.F809V|TMC5_uc002dgd.1_Missense_Mutation_p.F563V|TMC5_uc002dge.3_Missense_Mutation_p.F563V|TMC5_uc002dgf.3_Missense_Mutation_p.F492V|TMC5_uc002dgg.3_Missense_Mutation_p.F450V	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	809	Extracellular (Potential).					integral to membrane				skin(1)	1						TTTCATCATGTTCTACTCCAA	0.517000													31	64					0	0	0.045705	0	0
CCDC102A	92922	broad.mit.edu	37	16	57562850	57562850	+	Silent	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr16:57562850C>A	uc002elw.2	-	2	453	c.240G>T	c.(238-240)CTG>CTT	p.L80L		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	80	Potential.									ovary(1)	1						GCGCCTCCTCCAGCTCCCGCA	0.542000													4	7					0.00448238	0.00492569	0.047766	1	0
CES8	283848	broad.mit.edu	37	16	67038037	67038037	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr16:67038037C>A	uc002eqv.2	+	9	1033	c.990C>A	c.(988-990)GAC>GAA	p.D330E	CES8_uc010vix.1_Missense_Mutation_p.D330E|CES8_uc002eqw.2_Missense_Mutation_p.D330E|CES8_uc002eqy.2_Missense_Mutation_p.D232E|CES8_uc002eqx.2_Missense_Mutation_p.D136E|CES8_uc010viy.1_Missense_Mutation_p.D236E|CES8_uc010viz.1_Missense_Mutation_p.D232E|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	330						extracellular region	carboxylesterase activity				0						TCCCAGATGACCCTTTGGTGC	0.512000													126	220					1.22182e-49	1.60766e-49	0.139131	1	0
TNFSF12-TNFSF13	407977	broad.mit.edu	37	17	7464141	7464141	+	Silent	SNP	G	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr17:7464141G>A	uc002ghi.1	+	11	1039	c.984G>A	c.(982-984)GTG>GTA	p.V328V	SENP3_uc002ghm.2_5'Flank|TNFSF13_uc002ghj.2_Intron|TNFSF13_uc002ghk.2_Silent_p.V248V|TNFSF13_uc002ghl.2_Silent_p.V232V|TNFSF13_uc010cmk.2_Silent_p.V221V|TNFSF13_uc010vua.1_Silent_p.V220V	NM_172089	NP_742086	Q8IZK7	Q8IZK7_HUMAN	TNFSF12-TNFSF13 protein	328					immune response	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0		Prostate(122;0.157)				TGGGGTTTGTGAAACTGTGAT	0.473000											OREG0024138	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	122	328					0	0	0.139131	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40843435	40843435	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr17:40843435C>A	uc002iay.2	+	15	2466	c.2250C>A	c.(2248-2250)GAC>GAA	p.D750E	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	750	Extracellular (Potential).|Fibrinogen C-terminal.				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		CCTTTGTGGACCATCTGCCTG	0.582000													17	268					6.94344e-10	8.36559e-10	0.038395	1	0
MYST2	11143	broad.mit.edu	37	17	47869250	47869250	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr17:47869250G>T	uc002ipm.2	+	2	144	c.18G>T	c.(16-18)AGG>AGT	p.R6S	MYST2_uc002ipl.1_Missense_Mutation_p.R6S|MYST2_uc010wma.1_Missense_Mutation_p.R6S|MYST2_uc010wmb.1_Missense_Mutation_p.R6S|MYST2_uc010wmc.1_Missense_Mutation_p.R6S|MYST2_uc010wmd.1_5'UTR|MYST2_uc010wme.1_5'UTR	NM_007067	NP_008998	O95251	MYST2_HUMAN	MYST histone acetyltransferase 2	6					DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	histone acetyltransferase activity|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						TATTACAGAGGAATGCAGGCA	0.423000													86	277					2.16659e-41	2.81375e-41	0.139131	1	0
ACSBG2	81616	broad.mit.edu	37	19	6177251	6177251	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:6177251T>G	uc002mef.1	+	8	977	c.750T>G	c.(748-750)ATT>ATG	p.I250M	ACSBG2_uc002mee.1_Missense_Mutation_p.I63M|ACSBG2_uc002meg.1_Missense_Mutation_p.I250M|ACSBG2_uc002meh.1_Missense_Mutation_p.I250M|ACSBG2_uc002mei.1_Missense_Mutation_p.I200M|ACSBG2_uc010xiz.1_Missense_Mutation_p.I250M	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	250					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						TCACGTGGATTGCAGGAGCAG	0.393000													3	66					0	0	0.009096	0	0
ITPKC	80271	broad.mit.edu	37	19	41223385	41223385	+	Silent	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:41223385A>T	uc002oot.2	+	1	378	c.345A>T	c.(343-345)CCA>CCT	p.P115P	ADCK4_uc002ooq.1_5'Flank|ADCK4_uc002oor.2_5'Flank|ADCK4_uc002oos.2_5'Flank	NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	115						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			AGACGGAGCCAGACAGGTCCA	0.597000													52	118					0	0	0.139131	0	0
NTN5	126147	broad.mit.edu	37	19	49167945	49167945	+	Silent	SNP	A	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:49167945A>C	uc002pkb.2	-	3	807	c.711T>G	c.(709-711)GGT>GGG	p.G237G	SEC1_uc010xzv.1_Intron|SEC1_uc002pka.2_Intron|SEC1_uc010xzw.1_Intron|SEC1_uc010ema.2_Intron|NTN5_uc002pkc.2_Silent_p.G237G	NM_145807	NP_665806	Q8WTR8	NET5_HUMAN	netrin 5 precursor	237	Laminin EGF-like 2.					extracellular region				large_intestine(1)|pancreas(1)	2						GCTCACAAACACCCCCACTCC	0.652000													5	25					0	0	0.047766	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49971767	49971767	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:49971767A>T	uc002pnt.2	+	15	2184	c.2068A>T	c.(2068-2070)ACT>TCT	p.T690S	ALDH16A1_uc010yar.1_Missense_Mutation_p.T639S|ALDH16A1_uc010yas.1_Missense_Mutation_p.T525S|ALDH16A1_uc010yat.1_Missense_Mutation_p.T527S	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	690							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CTACGGCAACACTGTGGTCAT	0.687000													159	264					0	0	0.139131	0	0
ZNF134	7693	broad.mit.edu	37	19	58131703	58131703	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:58131703C>A	uc002qpn.2	+	3	315	c.216C>A	c.(214-216)CAC>CAA	p.H72Q	ZNF134_uc002qpo.2_5'UTR|ZNF211_uc010yhb.1_5'Flank	NM_003435	NP_003426	P52741	ZN134_HUMAN	zinc finger protein 134	72	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0265)		AGGGTACACACCATGGACTGA	0.493000													26	44					1.42536e-11	1.73824e-11	0.099896	1	0
PRKCE	5581	broad.mit.edu	37	2	45879507	45879507	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr2:45879507G>C	uc002rut.2	+	1	465	c.268G>C	c.(268-270)GGC>CGC	p.G90R		NM_005400	NP_005391	Q02156	KPCE_HUMAN	protein kinase C, epsilon	90	C2.				activation of phospholipase C activity|induction of apoptosis|intracellular signal transduction|nerve growth factor receptor signaling pathway|platelet activation	cytosol|endoplasmic reticulum|plasma membrane	ATP binding|enzyme activator activity|metal ion binding|signal transducer activity			lung(4)|ovary(3)|kidney(1)|breast(1)|large_intestine(1)	10		all_hematologic(82;0.155)|Acute lymphoblastic leukemia(82;0.209)	LUSC - Lung squamous cell carcinoma(58;0.171)			TGCCCCCATAGGCTACGACGA	0.622000													37	36					0	0	0.080422	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													3	141					0	0	0.115264	0	0
REV1	51455	broad.mit.edu	37	2	100019166	100019166	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr2:100019166C>T	uc002tad.2	-	21	3694	c.3482G>A	c.(3481-3483)GGA>GAA	p.G1161E	REV1_uc002tac.2_Missense_Mutation_p.G1160E	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	1161	Protein interaction domain; mediates interaction with DNA polymerase zeta.				DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TTCAACAGCTCCAGCTAGATT	0.493000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					44	63					0	0	0.139131	0	0
RIN2	54453	broad.mit.edu	37	20	19956190	19956190	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr20:19956190C>T	uc002wro.1	+	7	1557	c.1521C>T	c.(1519-1521)TTC>TTT	p.F507F	RIN2_uc010gcu.1_Intron|RIN2_uc010gcv.1_Silent_p.F301F	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	507					endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						TCAGCTCCTTCATGACCCCGG	0.592000													8	274					0	0	0.058154	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32199022	32199022	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr20:32199022A>G	uc002wzg.1	+	4	865	c.328A>G	c.(328-330)ACT>GCT	p.T110A	CBFA2T2_uc010zug.1_Intron|CBFA2T2_uc002wze.1_Missense_Mutation_p.T101A|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.T81A|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	110						nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						ATTGCCAGCCACTTGTGGTGC	0.527000													23	62					0	0	0.108266	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356313	37356313	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr20:37356313C>T	uc002xjc.2	+	2	872	c.609C>T	c.(607-609)GGC>GGT	p.G203G		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	203	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	CGCTGGGCGGCCGAGTGGTGA	0.632000													4	99					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	22	18844779	18844779	+	RNA	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr22:18844779C>T	uc002zoe.2	+	4		c.2033C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CAGCAGTGCACGTGGAGGAGA	0.582000													6	12					0	0	0.069234	0	0
RFPL3	10738	broad.mit.edu	37	22	32756482	32756482	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr22:32756482A>G	uc003amj.2	+	2	822	c.617A>G	c.(616-618)AAG>AGG	p.K206R	RFPL3_uc010gwn.2_Missense_Mutation_p.K177R|RFPL3S_uc003amk.2_RNA|RFPL3S_uc003aml.2_RNA	NM_001098535	NP_001092005	O75679	RFPL3_HUMAN	ret finger protein-like 3 isoform 1	206	B30.2/SPRY.						zinc ion binding			ovary(1)	1						TGCAAAGGGAAGATCCAGCTG	0.562000													4	235					0	0	0.047766	0	0
CACNA1I	8911	broad.mit.edu	37	22	40061912	40061912	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr22:40061912T>G	uc003ayc.2	+	23	4005	c.4005T>G	c.(4003-4005)TGT>TGG	p.C1335W	CACNA1I_uc003ayd.2_Missense_Mutation_p.C1300W|CACNA1I_uc003aye.2_Missense_Mutation_p.C1250W|CACNA1I_uc003ayf.2_Missense_Mutation_p.C1215W	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1335	Extracellular (Potential).|III.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCTACCACTGTCTGGGCGTGG	0.587000													70	121					0	0	0.139131	0	0
NUP210	23225	broad.mit.edu	37	3	13415370	13415370	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr3:13415370G>A	uc003bxv.1	-	12	1518	c.1435C>T	c.(1435-1437)CAC>TAC	p.H479Y	NUP210_uc003bxx.2_Missense_Mutation_p.H151Y	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	479	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CTGCCACCGTGGGCCTGCGGA	0.592000													19	32					0	0	0.076483	0	0
TRANK1	9881	broad.mit.edu	37	3	36873055	36873055	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr3:36873055C>T	uc003cgj.2	-	12	6539	c.6237G>A	c.(6235-6237)CTG>CTA	p.L2079L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2629					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCAAACAGAGCAGGCGGTTTA	0.532000													31	42					0	0	0.134883	0	0
ACAA1	30	broad.mit.edu	37	3	38178134	38178134	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr3:38178134C>G	uc003cht.2	-	2	421	c.214G>C	c.(214-216)GTT>CTT	p.V72L	ACAA1_uc003chu.2_Missense_Mutation_p.V72L|ACAA1_uc010hgy.2_Missense_Mutation_p.V72L|ACAA1_uc010hgz.2_Missense_Mutation_p.V72L|ACAA1_uc003chv.2_5'UTR|MYD88_uc011ayh.1_5'Flank|MYD88_uc011ayi.1_5'Flank|MYD88_uc011ayj.1_5'Flank|MYD88_uc011ayk.1_5'Flank|MYD88_uc011ayl.1_5'Flank|MYD88_uc003chx.2_5'Flank	NM_001607	NP_001598	P09110	THIK_HUMAN	acetyl-Coenzyme A acyltransferase 1 isoform a	72					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy	peroxisomal matrix	acetyl-CoA C-acyltransferase activity|protein binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0523)|Kidney(284;0.0657)		TCCTTGAGAACCGCGGTCATG	0.642000													24	47					0	0	0.099896	0	0
HTT	3064	broad.mit.edu	37	4	3201562	3201562	+	Silent	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr4:3201562C>T	uc011bvq.1	+	42	5623	c.5478C>T	c.(5476-5478)TCC>TCT	p.S1826S		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1824					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGGCTCGTTCCATGATCACCA	0.597000													9	207					0	0	0.058154	0	0
HPSE	10855	broad.mit.edu	37	4	84243394	84243394	+	Silent	SNP	G	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr4:84243394G>A	uc003hoj.3	-	2	450	c.351C>T	c.(349-351)TAC>TAT	p.Y117Y	HPSE_uc010ika.2_Silent_p.Y117Y|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_5'UTR|HPSE_uc011cct.1_Silent_p.Y117Y|HPSE_uc003hok.3_Silent_p.Y117Y	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	117					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	GAGATTGCCAGTAACTTCTCT	0.403000													19	26					0	0	0.062417	0	0
FAM198B	51313	broad.mit.edu	37	4	159092402	159092402	+	Silent	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr4:159092402A>T	uc003ipp.3	-	2	578	c.126T>A	c.(124-126)ACT>ACA	p.T42T	uc003ipu.1_5'Flank|FAM198B_uc003ipq.3_Silent_p.T42T|FAM198B_uc003ipr.3_Silent_p.T42T|FAM198B_uc003ips.2_Silent_p.T42T|uc003ipt.1_RNA	NM_016613	NP_057697	Q6UWH4	F198B_HUMAN	hypothetical protein LOC51313 isoform 2	42	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane					0						TGGCACACGCAGTGCCCAGCA	0.637000													94	157					0	0	0.139131	0	0
FAM173B	134145	broad.mit.edu	37	5	10249973	10249973	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:10249973C>T	uc003jeo.2	-	1	42	c.13G>A	c.(13-15)GGA>AGA	p.G5R	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Missense_Mutation_p.G5R|CCT5_uc011cmq.1_5'Flank|CCT5_uc003jeq.2_5'Flank|CCT5_uc003jer.2_5'Flank|CCT5_uc010its.2_5'Flank|CCT5_uc011cmr.1_5'Flank|CCT5_uc011cms.1_5'Flank|CCT5_uc011cmt.1_5'Flank	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	5						integral to membrane				kidney(1)|central_nervous_system(1)	2						GCCTCACCTCCTCCTCCCTCC	0.532000													14	33					0	0	0.086207	0	0
RGNEF	64283	broad.mit.edu	37	5	73163796	73163796	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:73163796G>C	uc011csq.1	+	18	2259	c.2248G>C	c.(2248-2250)GGA>CGA	p.G750R	RGNEF_uc003kcx.2_Missense_Mutation_p.G750R|RGNEF_uc010izf.2_Missense_Mutation_p.G750R|RGNEF_uc011csr.1_Missense_Mutation_p.G437R	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	750					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GGAGACTGTGGGACAGGTCCA	0.522000													9	20					0	0	0.080935	0	0
SHROOM1	134549	broad.mit.edu	37	5	132160478	132160478	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:132160478G>T	uc003kxx.2	-	6	1875	c.1070C>A	c.(1069-1071)CCT>CAT	p.P357H	SHROOM1_uc003kxy.1_Missense_Mutation_p.P357H	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	357					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TAACTCTGCAGGATACATCAC	0.567000													70	99					4.37588e-27	5.53909e-27	0.139131	1	0
SEC24A	10802	broad.mit.edu	37	5	134002687	134002687	+	Splice_Site	SNP	G	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:134002687G>A	uc003kzs.2	+	3	1027	c.739_splice	c.e3+1	p.G247_splice	SEC24A_uc011cxu.1_Splice_Site_p.K14_splice	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A						COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AACCAAGAAGGTAAGTGAACC	0.438000													44	79					0	0	0.131918	0	0
SPOCK1	6695	broad.mit.edu	37	5	136834142	136834142	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:136834142C>A	uc003lbo.2	-	1	297	c.106G>T	c.(106-108)GGC>TGC	p.G36C	SPOCK1_uc003lbp.2_Missense_Mutation_p.G36C	NM_004598	NP_004589	Q08629	TICN1_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	36					cell adhesion|cell proliferation|cellular component movement|nervous system development|signal transduction	proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGGAAATTGCCGTGGTTGGGG	0.682000													13	20					2.31682e-05	2.69398e-05	0.132662	1	0
PBX2	5089	broad.mit.edu	37	6	32156280	32156280	+	Silent	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr6:32156280G>T	uc003oav.1	-	3	568	c.297C>A	c.(295-297)GGC>GGA	p.G99G	PBX2_uc003oaw.2_Silent_p.G99G	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	99							transcription factor binding			ovary(1)	1						GAATGCTGAGGCCTAGCATGC	0.612000													11	132					0.000978159	0.00109906	0.080935	1	0
KIF6	221458	broad.mit.edu	37	6	39313488	39313488	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr6:39313488G>T	uc003oot.2	-	21	2404	c.2309C>A	c.(2308-2310)CCA>CAA	p.P770Q	KIF6_uc003oos.2_Missense_Mutation_p.P221Q|KIF6_uc010jwz.1_Missense_Mutation_p.P145Q|KIF6_uc010jxa.1_Missense_Mutation_p.P544Q|KIF6_uc011dua.1_Missense_Mutation_p.P753Q|KIF6_uc010jxb.1_Missense_Mutation_p.P714Q	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	770					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						GTCTTCCAGTGGGGTGCTGGT	0.557000													22	32					7.76418e-22	9.70523e-22	0.108266	1	0
NR2E1	7101	broad.mit.edu	37	6	108499383	108499383	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr6:108499383T>G	uc003psg.2	+	5	1335	c.580T>G	c.(580-582)TTC>GTC	p.F194V		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	194	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		CAGACTTCTCTTCATGAGCAT	0.527000													26	44					0	0	0.108266	0	0
DNAH11	8701	broad.mit.edu	37	7	21730436	21730436	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr7:21730436T>C	uc003svc.2	+	36	6030	c.5999T>C	c.(5998-6000)ATT>ACT	p.I2000T		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2000	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GGAATATTTATTACTATGAAC	0.378000									Kartagener_syndrome				5	578					0	0	0.021553	0	0
HIPK2	28996	broad.mit.edu	37	7	139299101	139299101	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr7:139299101T>C	uc003vvf.3	-	8	2095	c.1921A>G	c.(1921-1923)ACA>GCA	p.T641A	HIPK2_uc003vvd.3_Missense_Mutation_p.T614A	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	641	Interaction with SKI and SMAD1.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					ATCTGGGCTGTTCCTGTCTGC	0.597000													38	53					0	0	0.092188	0	0
KCNU1	157855	broad.mit.edu	37	8	36698474	36698474	+	Silent	SNP	C	A	A			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr8:36698474C>A	uc010lvw.2	+	16	1743	c.1656C>A	c.(1654-1656)CTC>CTA	p.L552L	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	552	Segment S8.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		AGATGCACCTCCTGTTGATAG	0.413000													5	19					1.23904e-05	1.45769e-05	0.014758	1	0
ERMP1	79956	broad.mit.edu	37	9	5801231	5801231	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr9:5801231A>T	uc003zjm.1	-	11	2066	c.2012T>A	c.(2011-2013)TTT>TAT	p.F671Y	ERMP1_uc011lme.1_RNA|ERMP1_uc010mhs.1_Missense_Mutation_p.F285Y	NM_024896	NP_079172	Q7Z2K6	ERMP1_HUMAN	aminopeptidase Fxna	671	Helical; (Potential).				proteolysis	endoplasmic reticulum membrane|integral to membrane	metal ion binding|metallopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00115)|Lung(218;0.111)		ATATGGAAAAAATGTTCCACT	0.403000													16	44					0	0	0.132662	0	0
TYRP1	7306	broad.mit.edu	37	9	12694339	12694339	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr9:12694339C>G	uc003zkv.3	+	2	521	c.343C>G	c.(343-345)CCT>GCT	p.P115A		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	115	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		GACGTGCCGTCCTGGCTGGAG	0.507000									Oculocutaneous_Albinism				10	30					0	0	0.093190	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627050	43627050	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr9:43627050T>C	uc011lrb.1	-	4	1666	c.1637A>G	c.(1636-1638)AAA>AGA	p.K546R		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	546						integral to membrane					0						TTCTAGTTGTTTCCTCAACAA	0.478000													2	0					0	0	0.115264	0	0
KIF12	113220	broad.mit.edu	37	9	116859620	116859620	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr9:116859620A>T	uc004bif.2	-	4	431	c.193T>A	c.(193-195)TTT>ATT	p.F65I	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	198	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGACTCCCAAATTCCACCACC	0.602000													28	50					0	0	0.125774	0	0
HTATSF1	27336	broad.mit.edu	37	X	135594033	135594033	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chrX:135594033A>T	uc004ezw.2	+	10	2551	c.2129A>T	c.(2128-2130)GAG>GTG	p.E710V	HTATSF1_uc004ezx.2_Missense_Mutation_p.E710V	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	710	Asp/Glu-rich (acidic).|Mediates interaction with the P-TEFb complex.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TTTGATGAGGAGGAAGATTCC	0.458000													13	3					0	0	0.105934	0	0
F13B	2165	broad.mit.edu	37	1	197021793	197021794	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr1:197021793_197021794delTC	uc001gtt.1	-	9	1569_1570	c.1525_1526delGA	c.(1525-1527)GAAfs	p.E509fs		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	509	Sushi 8.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATATTTCACTTCTCCTCTGTTG	0.327													2	4	---	---	---	---					
OSBPL5	114879	broad.mit.edu	37	11	3143300	3143300	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr11:3143300delT	uc001lxk.2	-	5	487	c.329delA	c.(328-330)AAGfs	p.K110fs	OSBPL5_uc010qxq.1_Frame_Shift_Del_p.K62fs|OSBPL5_uc009ydw.2_Frame_Shift_Del_p.K110fs|OSBPL5_uc001lxl.2_Frame_Shift_Del_p.K110fs|OSBPL5_uc009ydx.2_Frame_Shift_Del_p.K134fs	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	110					cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GGCGCGCTTCTTCTCCTGCCG	0.687													11	15	---	---	---	---					
FSD2	123722	broad.mit.edu	37	15	83437762	83437764	+	In_Frame_Del	DEL	TAA	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr15:83437762_83437764delTAA	uc002bjd.2	-	9	1588_1590	c.1421_1423delTTA	c.(1420-1425)ATTAAA>AAA	p.I474del	FSD2_uc010uol.1_In_Frame_Del_p.I429del|FSD2_uc010uom.1_In_Frame_Del_p.I429del	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	474	Fibronectin type-III 2.									central_nervous_system(1)	1						TCTTTGGTTTTAATAATGGGGGG	0.483													9	13	---	---	---	---					
KIAA0430	9665	broad.mit.edu	37	16	15716936	15716936	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr16:15716936delA	uc002ddr.2	-	11	2508	c.2315delT	c.(2314-2316)TTCfs	p.F772fs	KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Frame_Shift_Del_p.F768fs|KIAA0430_uc010uzw.1_Frame_Shift_Del_p.F771fs	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	771						peroxisome	nucleotide binding|RNA binding				0						TGCAATGTTGAAAGCAAGCGG	0.408													63	137	---	---	---	---					
CEP192	55125	broad.mit.edu	37	18	13049324	13049324	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr18:13049324delT	uc010xac.1	+	16	2614	c.2534delT	c.(2533-2535)GTTfs	p.V845fs	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Frame_Shift_Del_p.V370fs|CEP192_uc002kru.2_RNA|CEP192_uc002krs.1_Frame_Shift_Del_p.V586fs	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	845										ovary(4)|pancreas(1)	5						GCAGCTATTGTTTATGTTGAA	0.383													19	42	---	---	---	---					
COX7A1	1346	broad.mit.edu	37	19	36642400	36642402	+	In_Frame_Del	DEL	TGT	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:36642400_36642402delTGT	uc002odm.1	-	3	611_613	c.149_151delACA	c.(148-153)AACATC>ATC	p.N50del		NM_001864	NP_001855	P24310	CX7A1_HUMAN	cytochrome c oxidase subunit VIIa polypeptide 1	50	Helical; (By similarity).				generation of precursor metabolites and energy	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity|electron carrier activity				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CGGTACAGGATGTTGTCAACGAT	0.626													64	179	---	---	---	---					
ERF	2077	broad.mit.edu	37	19	42752789	42752790	+	In_Frame_Ins	INS	-	AAA	AAA			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr19:42752789_42752790insAAA	uc002ote.3	-	4	1632_1633	c.1474_1475insTTT	c.(1474-1476)TGT>TTTTGT	p.491_492insF	ERF_uc002otd.3_In_Frame_Ins_p.222_223insF	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	491_492					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				TTCGAGGCGACAGTCTTCACTC	0.698													60	203	---	---	---	---					
CTBP1	1487	broad.mit.edu	37	4	1232016	1232016	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr4:1232016delA	uc003gcv.1	-	2	315	c.150delT	c.(148-150)ACTfs	p.T50fs	CTBP1_uc003gct.1_Frame_Shift_Del_p.T31fs|CTBP1_uc003gcu.1_Frame_Shift_Del_p.T39fs|CTBP1_uc003gcx.1_Frame_Shift_Del_p.T39fs	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	50	Interaction with GLIS2 1 (By similarity).				interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		AGAAGGCCACAGTGGCCACGT	0.657													80	198	---	---	---	---					
MAST4	375449	broad.mit.edu	37	5	66438012	66438022	+	Frame_Shift_Del	DEL	AGGCAGAATTT	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr5:66438012_66438022delAGGCAGAATTT	uc003jut.1	+	19	2065_2075	c.1997_2007delAGGCAGAATTT	c.(1996-2007)AAGGCAGAATTTfs	p.K666fs	MAST4_uc003juu.1_Frame_Shift_Del_p.K676fs|MAST4_uc011cra.1_Frame_Shift_Del_p.K649fs|MAST4_uc003juv.2_Frame_Shift_Del_p.K661fs|MAST4_uc003juw.2_Frame_Shift_Del_p.K661fs	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	858_861	AGC-kinase C-terminal.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CTGAGACAGAAGGCAGAATTTATTCCCCAAC	0.403													16	25	---	---	---	---					
HIST1H2AD	3013	broad.mit.edu	37	6	26199108	26199109	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr6:26199108_26199109delCA	uc003ngw.2	-	1	363_364	c.363_364delTG	c.(361-366)ACTGAGfs	p.T121fs	HIST1H3D_uc003ngv.2_5'UTR|HIST1H2BF_uc003ngx.2_5'Flank	NM_021065	NP_066409	P20671	H2A1D_HUMAN	histone cluster 1, H2ad	121_122					nucleosome assembly	nucleosome|nucleus	DNA binding				0		all_hematologic(11;0.196)				TGGTGACTCTCAGTCTTCTTGG	0.485													27	261	---	---	---	---					
BTN3A2	11118	broad.mit.edu	37	6	26370805	26370805	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr6:26370805delA	uc010jqh.1	+	5	948	c.689delA	c.(688-690)GAAfs	p.E230fs	BTN3A2_uc003nho.1_Frame_Shift_Del_p.E228fs|BTN3A2_uc003nhp.2_Frame_Shift_Del_p.E230fs|BTN3A2_uc011dkd.1_Frame_Shift_Del_p.E188fs|BTN3A2_uc011dke.1_Frame_Shift_Del_p.E207fs|BTN3A2_uc010jqi.1_Frame_Shift_Del_p.E228fs	NM_007047	NP_008978	P78410	BT3A2_HUMAN	butyrophilin, subfamily 3, member A2 precursor	230	Extracellular (Potential).					integral to membrane					0						CTCGGCCTGGAAAAGACAGCC	0.522													70	127	---	---	---	---					
MAGI2	9863	broad.mit.edu	37	7	79082570	79082571	+	Frame_Shift_Ins	INS	-	C	C			TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	g.chr7:79082570_79082571insC	uc003ugx.2	-	1	320_321	c.66_67insG	c.(64-69)AGGAACfs	p.R22fs	MAGI2_uc003ugy.2_Frame_Shift_Ins_p.R22fs|uc010lea.1_5'Flank	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	22_23	PDZ 1.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CCCTCCGGGTTCCTGCCAATGA	0.589													7	1049	---	---	---	---					
