Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLCN6	1185	broad.mit.edu	37	1	11888206	11888206	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:11888206G>A	uc001ate.3	+	11	997	c.884G>A	c.(883-885)CGT>CAT	p.R295H	CLCN6_uc009vnf.1_Silent_p.P298P|CLCN6_uc009vng.1_Silent_p.P286P|CLCN6_uc009vnh.1_Missense_Mutation_p.R295H|CLCN6_uc010oat.1_Missense_Mutation_p.R11H|CLCN6_uc010oau.1_Missense_Mutation_p.R273H	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	295					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		AACTTCTTCCGTTCTGGGATT	0.483000													43	765					0	0	0.014410	0	0
FGR	2268	broad.mit.edu	37	1	27943508	27943508	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:27943508G>A	uc001boj.2	-	5	688	c.542C>T	c.(541-543)TCC>TTC	p.S181F	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Missense_Mutation_p.S181F|FGR_uc001bol.2_Missense_Mutation_p.S181F|FGR_uc001bom.2_Missense_Mutation_p.S181F	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	181	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GATGGACAGGGAGTAGGCACC	0.567000													113	82					0	0	0.014410	0	0
PBX1	5087	broad.mit.edu	37	1	164761796	164761796	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:164761796A>T	uc001gct.2	+	3	589	c.331A>T	c.(331-333)ATG>TTG	p.M111L	PBX1_uc010pku.1_Missense_Mutation_p.M111L|PBX1_uc010pkv.1_Missense_Mutation_p.M28L|PBX1_uc001gcs.2_Missense_Mutation_p.M111L|PBX1_uc010pkw.1_Missense_Mutation_p.M1L	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	111					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GCTGGACAACATGCTGTTAGC	0.498000			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								35	56					0	0	0.004878	0	0
CACNA1S	779	broad.mit.edu	37	1	201039482	201039482	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:201039482G>A	uc001gvv.2	-	17	2505	c.2278C>T	c.(2278-2280)CCC>TCC	p.P760S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	760	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCAGCCAGGGGACGTGGTCGG	0.587000													107	212					0	0	0.014410	0	0
FMOD	2331	broad.mit.edu	37	1	203311609	203311609	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:203311609G>T	uc001gzr.2	-	3	1129	c.993C>A	c.(991-993)AGC>AGA	p.S331R	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	331	LRR 10.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			TGCAGAAGCTGCTGATGGAGA	0.597000											OREG0014119	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	74					6.40141e-05	7.01909e-05	0.010729	1	0
EGLN1	54583	broad.mit.edu	37	1	231502192	231502192	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:231502192T>A	uc001huv.2	-	5	4402	c.1246A>T	c.(1246-1248)AAA>TAA	p.K416*	EGLN1_uc001huu.3_Nonsense_Mutation_p.K118*	NM_022051	NP_071334	Q9GZT9	EGLN1_HUMAN	egl nine homolog 1	416					negative regulation of sequence-specific DNA binding transcription factor activity|oxygen homeostasis|response to hypoxia	cytosol	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-proline dioxygenase activity|protein binding|zinc ion binding				0		Prostate(94;0.194)|Acute lymphoblastic leukemia(190;0.244)			Vitamin C(DB00126)	TCTGAAGGTTTATTGAGTTCA	0.378000													16	41					0	0	0.008871	0	0
ZNF692	55657	broad.mit.edu	37	1	249150136	249150136	+	Silent	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:249150136A>G	uc001ifc.1	-	7	836	c.669T>C	c.(667-669)CCT>CCC	p.P223P	ZNF692_uc001iez.1_5'UTR|ZNF692_uc001ifa.1_5'UTR|ZNF692_uc001ifb.1_Silent_p.P19P|ZNF692_uc001ifd.1_Silent_p.P222P|ZNF692_uc001ife.1_RNA|ZNF692_uc001iff.1_Silent_p.P178P|ZNF692_uc010pzr.1_Silent_p.P228P	NM_017865	NP_060335	Q9BU19	ZN692_HUMAN	zinc finger protein 692 isoform 2	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			TGGGGGCATCAGGCTCACTAC	0.567000													3	111					0	0	0.004672	0	0
FAM45A	404636	broad.mit.edu	37	10	120879873	120879873	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr10:120879873A>T	uc001ldw.2	+	5	546	c.502A>T	c.(502-504)ATG>TTG	p.M168L	FAM45A_uc010qsv.1_Missense_Mutation_p.M160L|FAM45A_uc010qsw.1_Missense_Mutation_p.M17L|FAM45A_uc010qsx.1_Intron|FAM45A_uc010qsy.1_Missense_Mutation_p.M95L|FAM45A_uc010qsz.1_Missense_Mutation_p.M57L	NM_207009	NP_996892	Q8TCE6	FA45A_HUMAN	hypothetical protein LOC404636	168										ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0293)		TCAGTTTGGAATGGAAACTGT	0.333000													35	76					0	0	0.004878	0	0
FANK1	92565	broad.mit.edu	37	10	127585218	127585218	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr10:127585218C>A	uc001ljh.3	+	1	111	c.7C>A	c.(7-9)CCC>ACC	p.P3T	DHX32_uc001ljg.1_5'Flank|FANK1_uc010quk.1_5'UTR|FANK1_uc009yan.2_Missense_Mutation_p.P3T	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	3						cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GACCATGGAGCCCCAGAGTAA	0.562000													3	17					6.4e-05	7.01909e-05	0.004672	1	0
LOC653544	653544	broad.mit.edu	37	10	135491112	135491112	+	Missense_Mutation	SNP	C	A	A	rs141602288	by1000genomes	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr10:135491112C>A	uc010qvi.1	+	1	834	c.723C>A	c.(721-723)TTC>TTA	p.F241L		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	241						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGTCGCCTTCGCCCACACCG	0.776000													4	222					1.5842e-08	1.8507e-08	0.001855	1	0
TRIM48	79097	broad.mit.edu	37	11	55032729	55032729	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:55032729G>T	uc010rid.1	+	2	484	c.398G>T	c.(397-399)AGC>ATC	p.S133I		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	117	B box-type.					intracellular	zinc ion binding				0						CTGTGCTCCAGCTCTCAGGAG	0.507000													8	6					5.18039e-06	5.83377e-06	0.003080	1	0
COX8A	1351	broad.mit.edu	37	11	63743765	63743765	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:63743765C>G	uc001nye.2	+	2	257	c.183C>G	c.(181-183)CAC>CAG	p.H61Q		NM_004074	NP_004065	P10176	COX8A_HUMAN	cytochrome c oxidase subunit VIIIa precursor	61	Mitochondrial intermembrane (By similarity).				respiratory electron transport chain	integral to membrane|mitochondrial inner membrane	cytochrome-c oxidase activity				0						TCCTGTCACACCTGGAGACCT	0.587000													110	316					0	0	0.014410	0	0
SCYL1	57410	broad.mit.edu	37	11	65305494	65305494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:65305494G>A	uc001oea.1	+	16	2165	c.2088G>A	c.(2086-2088)TGG>TGA	p.W696*	SCYL1_uc009yqk.2_Nonsense_Mutation_p.W696*|SCYL1_uc001oeb.1_Nonsense_Mutation_p.W679*|SCYL1_uc001oec.1_Missense_Mutation_p.G684E|SCYL1_uc001oed.1_Nonsense_Mutation_p.W553*|SCYL1_uc001oee.1_Nonsense_Mutation_p.W340*	NM_020680	NP_065731	Q96KG9	NTKL_HUMAN	SCY1-like 1 isoform A	696					regulation of transcription, DNA-dependent|retrograde vesicle-mediated transport, Golgi to ER|transcription, DNA-dependent	cis-Golgi network|COPI vesicle coat|ER-Golgi intermediate compartment|microtubule organizing center|nucleus	ATP binding|DNA binding|protein tyrosine kinase activity			skin(1)	1						GGAGCAGCTGGGAAGCTGAGG	0.637000													15	18					0	0	0.004990	0	0
IGSF9B	22997	broad.mit.edu	37	11	133805658	133805658	+	Splice_Site	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:133805658C>T	uc001qgx.3	-	7	1053	c.822_splice	c.e7-1	p.N274_splice	IGSF9B_uc001qgy.1_Splice_Site_p.N116_splice	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B							integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CTTCAGGTCGCTGCAAAGCGG	0.617000													28	22					0	0	0.007291	0	0
CACNA1C	775	broad.mit.edu	37	12	2794927	2794927	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:2794927C>T	uc009zdu.1	+	47	6161	c.5848C>T	c.(5848-5850)CGG>TGG	p.R1950W	CACNA1C_uc009zdv.1_Missense_Mutation_p.R1864W|CACNA1C_uc001qkb.2_Missense_Mutation_p.R1867W|CACNA1C_uc001qkc.2_Missense_Mutation_p.R1886W|CACNA1C_uc001qke.2_Missense_Mutation_p.R1856W|CACNA1C_uc001qkf.2_Missense_Mutation_p.R1875W|CACNA1C_uc001qjz.2_Missense_Mutation_p.R1867W|CACNA1C_uc001qkd.2_Missense_Mutation_p.R1886W|CACNA1C_uc001qkg.2_Missense_Mutation_p.R1873W|CACNA1C_uc009zdw.1_Missense_Mutation_p.R1908W|CACNA1C_uc001qkh.2_Missense_Mutation_p.R1875W|CACNA1C_uc001qkl.2_Missense_Mutation_p.R1915W|CACNA1C_uc001qkn.2_Missense_Mutation_p.R1867W|CACNA1C_uc001qko.2_Missense_Mutation_p.R1887W|CACNA1C_uc001qkp.2_Missense_Mutation_p.R1867W|CACNA1C_uc001qkr.2_Missense_Mutation_p.R1884W|CACNA1C_uc001qku.2_Missense_Mutation_p.R1902W|CACNA1C_uc001qkq.2_Missense_Mutation_p.R1895W|CACNA1C_uc001qks.2_Missense_Mutation_p.R1867W|CACNA1C_uc001qkt.2_Missense_Mutation_p.R1886W|CACNA1C_uc001qki.1_Missense_Mutation_p.R1674W|CACNA1C_uc001qkj.1_Missense_Mutation_p.R1638W|CACNA1C_uc001qkk.1_Missense_Mutation_p.R1603W|CACNA1C_uc001qkm.1_Missense_Mutation_p.R1663W|CACNA1C_uc010sea.1_Missense_Mutation_p.R558W|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Missense_Mutation_p.R185W	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1950	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGACGAAAATCGGCAACTGAC	0.602000													4	131					0	0	0.010729	0	0
MFSD5	84975	broad.mit.edu	37	12	53647275	53647275	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:53647275T>G	uc001sci.1	+	2	847	c.656T>G	c.(655-657)CTT>CGT	p.L219R	MFSD5_uc001sch.1_Missense_Mutation_p.L326R	NM_032889	NP_116278	Q6N075	MFSD5_HUMAN	major facilitator superfamily domain containing	219					transport	integral to membrane				skin(2)|ovary(1)	3						GCCTTGGCCCTTCGAAACTGG	0.662000													105	197					0	0	0.014410	0	0
SMARCC2	6601	broad.mit.edu	37	12	56559482	56559482	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:56559482A>G	uc001skb.2	-	26	2865	c.2759T>C	c.(2758-2760)CTG>CCG	p.L920P	SMARCC2_uc001skd.2_Missense_Mutation_p.L951P|SMARCC2_uc001ska.2_Missense_Mutation_p.L951P|SMARCC2_uc001skc.2_Missense_Mutation_p.L950P|SMARCC2_uc010sqf.1_Missense_Mutation_p.L840P	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	920	Potential.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			CTGATACTCCAGCTGCCAGTG	0.527000													16	31					0	0	0.005443	0	0
PPFIA2	8499	broad.mit.edu	37	12	81661720	81661720	+	Silent	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:81661720A>G	uc001szo.1	-	29	3618	c.3457T>C	c.(3457-3459)TTA>CTA	p.L1153L	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	1052										ovary(3)|lung(2)|pancreas(1)	6						ATCTGTAATAATAAAGCTAAG	0.363000													6	17					0	0	0.003080	0	0
ATXN2	6311	broad.mit.edu	37	12	111963052	111963052	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:111963052A>G	uc001tsj.2	-	6	1282	c.1120T>C	c.(1120-1122)TGG>CGG	p.W374R	ATXN2_uc001tsh.2_Missense_Mutation_p.W109R|ATXN2_uc001tsi.2_Missense_Mutation_p.W85R|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.W109R	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	374					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						CCTGCATCCCAGGGCTCCAGG	0.418000													34	65					0	0	0.004289	0	0
ZNF10	7556	broad.mit.edu	37	12	133732280	133732280	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:133732280G>C	uc009zzb.2	+	5	895	c.448G>C	c.(448-450)GTG>CTG	p.V150L	ZNF268_uc010tbv.1_Intron|ZNF10_uc001ulq.2_Missense_Mutation_p.V150L	NM_015394	NP_056209	P21506	ZNF10_HUMAN	zinc finger protein 10	150				Missing (in Ref. 1).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;1.28e-06)|all_epithelial(31;0.0051)|Lung NSC(355;0.00948)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		TTTGAGGCAAGTGGCATTCAC	0.428000													10	31					0	0	0.006214	0	0
IL17D	53342	broad.mit.edu	37	13	21295994	21295994	+	Silent	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr13:21295994C>T	uc001unm.2	+	3	618	c.510C>T	c.(508-510)GTC>GTT	p.V170V		NM_138284	NP_612141	Q8TAD2	IL17D_HUMAN	interleukin 17D precursor	170					inflammatory response	extracellular space	cytokine activity				0		all_cancers(29;9.63e-24)|all_epithelial(30;1.09e-19)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000301)|Epithelial(112;0.000633)|OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Lung(94;0.0154)|LUSC - Lung squamous cell carcinoma(192;0.0414)		GCACCTGCGTCCCCGAGCCGG	0.706000													47	67					0	0	0.014410	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731000													3	11					0	0	0.009096	0	0
AP4E1	23431	broad.mit.edu	37	15	51285604	51285604	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr15:51285604T>G	uc001zyx.1	+	17	2158	c.2128T>G	c.(2128-2130)TGG>GGG	p.W710G		NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	710					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		AAAGAAATTGTGGGGGAAAGA	0.383000													3	21					0	0	0.004672	0	0
LOC645752	645752	broad.mit.edu	37	15	78208021	78208021	+	Silent	SNP	T	C	C	rs58158543	by1000genomes	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr15:78208021T>C	uc010bky.2	-	16	1829	c.1065A>G	c.(1063-1065)GAA>GAG	p.E355E	LOC645752_uc010umq.1_Silent_p.E2E|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TGATGACATCTTCCATCTCCT	0.607000													6	308					0	0	0.001168	0	0
IGF1R	3480	broad.mit.edu	37	15	99465632	99465632	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr15:99465632C>A	uc002bul.2	+	11	2507	c.2457C>A	c.(2455-2457)AAC>AAA	p.N819K	IGF1R_uc010urq.1_Missense_Mutation_p.N819K|IGF1R_uc010bon.2_Missense_Mutation_p.N819K|IGF1R_uc010boo.1_5'Flank	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	819	Extracellular (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GCGCCTCCAACTTCGTCTTTG	0.517000													92	176					2.13259e-42	2.69266e-42	0.014410	1	0
MKL2	57496	broad.mit.edu	37	16	14346228	14346228	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:14346228T>G	uc010uza.1	+	15	2727	c.2572T>G	c.(2572-2574)TCA>GCA	p.S858A	MKL2_uc002dcg.2_Missense_Mutation_p.S808A|MKL2_uc002dcj.2_Missense_Mutation_p.S103A	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	847					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						ACAGCCTAGTTCACCCCCGCC	0.522000													61	142					0	0	0.014410	0	0
BFAR	51283	broad.mit.edu	37	16	14755800	14755800	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:14755800C>G	uc002dco.2	+	6	1116	c.835C>G	c.(835-837)CCC>GCC	p.P279A	BFAR_uc002dcp.2_Missense_Mutation_p.P154A|BFAR_uc010uzh.1_Missense_Mutation_p.P151A	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	279	Lumenal (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						CAAGAGCTCCCCCAGGCTGAG	0.567000													152	266					0	0	0.014410	0	0
SMG1	23049	broad.mit.edu	37	16	18851234	18851234	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:18851234C>T	uc002dfm.2	-	42	7094	c.6731G>A	c.(6730-6732)GGA>GAA	p.G2244E	SMG1_uc010bwb.2_Missense_Mutation_p.G2104E|SMG1_uc010bwa.2_Missense_Mutation_p.G975E|SMG1_uc002dfo.3_Missense_Mutation_p.G542E	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2244	PI3K/PI4K.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						GGGTACAATTCCAGGATTCTG	0.388000													3	11					0	0	0.004672	0	0
GPRC5B	51704	broad.mit.edu	37	16	19884048	19884048	+	Silent	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:19884048G>A	uc002dgt.2	-	2	228	c.120C>T	c.(118-120)GAC>GAT	p.D40D	GPRC5B_uc010vav.1_Silent_p.D66D	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	40	Extracellular (Potential).									lung(1)|breast(1)|skin(1)	3						GAGGGAGGAGGTCCAGCCCAC	0.637000													70	98					0	0	0.014410	0	0
BCL7C	9274	broad.mit.edu	37	16	30899187	30899187	+	Silent	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:30899187C>T	uc002dzv.2	-	6	787	c.653G>A	c.(652-654)TGA>TAA	p.*218*	BCL7C_uc002dzt.1_Intron|uc002dzu.2_Intron	NM_004765	NP_004756	Q8WUZ0	BCL7C_HUMAN	B-cell CLL/lymphoma 7C	218					apoptosis						0			Colorectal(24;0.198)			GCCGGCTTCTCAGGGGTCAGG	0.567000													222	325					0	0	0.014410	0	0
ZNF423	23090	broad.mit.edu	37	16	49671278	49671278	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:49671278G>T	uc002efs.2	-	5	2083	c.1785C>A	c.(1783-1785)CAC>CAA	p.H595Q	ZNF423_uc010vgn.1_Missense_Mutation_p.H478Q	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	595					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ACTTCTTGCTGTGGGCCAGTG	0.572000													87	195					1.78623e-52	2.30184e-52	0.014410	1	0
BBS2	583	broad.mit.edu	37	16	56531663	56531663	+	Silent	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:56531663G>A	uc002ejd.2	-	14	2023	c.1789C>T	c.(1789-1791)CTA>TTA	p.L597L		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	597					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						ACCTTAACTAGCACCTTTCGT	0.373000									Bardet-Biedl_syndrome				26	38					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	16	74425443	74425443	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:74425443C>A	uc010vmt.1	+	6	615	c.614C>A	c.(613-615)CCT>CAT	p.P205H						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		CTCAAGACACCTCCCGAATGT	0.488000													37	303					2.47872e-24	3.06773e-24	0.010771	1	0
ZC3H18	124245	broad.mit.edu	37	16	88653023	88653023	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr16:88653023G>T	uc002fky.2	+	3	819	c.619G>T	c.(619-621)GAA>TAA	p.E207*	ZC3H18_uc010voy.1_Nonsense_Mutation_p.E90*|ZC3H18_uc010voz.1_Nonsense_Mutation_p.E207*|ZC3H18_uc010vpa.1_Nonsense_Mutation_p.E207*	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	207						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		TGACCTGGAAGAAGGTGAAGT	0.542000													34	109					1.60099e-16	1.92426e-16	0.004878	1	0
MINK1	50488	broad.mit.edu	37	17	4800540	4800540	+	Silent	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:4800540T>G	uc010vsl.1	+	32	4153	c.3957T>G	c.(3955-3957)GTT>GTG	p.V1319V	MINK1_uc010vsk.1_Silent_p.V1290V|MINK1_uc010vsm.1_Silent_p.V1299V|MINK1_uc010vsn.1_Silent_p.V1282V|MINK1_uc010vso.1_Silent_p.V1227V|MINK1_uc010vsp.1_Silent_p.V780V|C17orf107_uc010ckr.2_5'Flank|C17orf107_uc002fzl.3_5'Flank	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	1319	Mediates interaction with RAP2A.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						GCAGCCAAGTTTACTTCATGA	0.612000													24	60					0	0	0.002780	0	0
YBX2	51087	broad.mit.edu	37	17	7193332	7193332	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:7193332C>A	uc002gfq.2	-	6	860	c.803G>T	c.(802-804)GGA>GTA	p.G268V		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	268	Pro-rich.|Required for mRNA-binding.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						TCGCTCATCTCCCTGCTGTTG	0.632000													83	126					7.90906e-34	9.88632e-34	0.014410	1	0
SPEM1	374768	broad.mit.edu	37	17	7324267	7324267	+	Silent	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:7324267C>A	uc002ggv.2	+	3	298	c.273C>A	c.(271-273)GTC>GTA	p.V91V	FGF11_uc010vtw.1_Intron	NM_199339	NP_955371	Q8N4L4	SPEM1_HUMAN	spermatid maturation 1	91					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|integral to membrane					0		Prostate(122;0.173)				CTCCTGCAGTCCATCTTCGGT	0.597000													120	177					4.46965e-45	5.70108e-45	0.014410	1	0
GUCY2D	3000	broad.mit.edu	37	17	7919305	7919305	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:7919305A>C	uc002gjt.2	+	17	3178	c.3104A>C	c.(3103-3105)TAC>TCC	p.Y1035S		NM_000180	NP_000171	Q02846	GUC2D_HUMAN	guanylate cyclase 2D, membrane (retina-specific)	1035	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			skin(1)	1		Prostate(122;0.157)				GACTCGGGCTACCAGGTGGAG	0.697000													9	20					0	0	0.010729	0	0
NCOR1	9611	broad.mit.edu	37	17	15964734	15964734	+	Silent	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:15964734A>G	uc002gpo.2	-	37	6102	c.5862T>C	c.(5860-5862)AGT>AGC	p.S1954S	NCOR1_uc002gpn.2_Intron|NCOR1_uc002gpm.2_Silent_p.S474S|NCOR1_uc010vwb.1_Silent_p.S538S|NCOR1_uc010coy.2_Silent_p.S862S|NCOR1_uc010vwc.1_Silent_p.S764S	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1954	Poly-Ser.|Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		AAGAGTCTGAACTTTGAGAGC	0.428000													83	217					0	0	0.014410	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40821477	40821477	+	Nonsense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:40821477C>A	uc002iau.2	-	12	2643	c.2176G>T	c.(2176-2178)GAG>TAG	p.E726*	PLEKHH3_uc010cyl.1_Intron|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Nonsense_Mutation_p.E87*|PLEKHH3_uc002iaw.2_3'UTR	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	726	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		AGCTGGCTCTCTCCCACCCTC	0.572000													40	57					2.35958e-20	2.86357e-20	0.009718	1	0
UBTF	7343	broad.mit.edu	37	17	42289718	42289718	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:42289718C>G	uc002igb.2	-	7	832	c.765G>C	c.(763-765)GAG>GAC	p.E255D	UBTF_uc002igc.2_Intron|UBTF_uc010czs.2_Missense_Mutation_p.E255D|UBTF_uc002igd.2_Intron|UBTF_uc010czt.2_Missense_Mutation_p.E255D|UBTF_uc002ige.2_Intron	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	255	HMG box 2.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TAACCTCGTACTCCTTCCGCT	0.617000													83	154					0	0	0.014410	0	0
TIMM44	10469	broad.mit.edu	37	19	8002997	8002997	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:8002997T>A	uc002miz.2	-	3	229	c.227A>T	c.(226-228)GAA>GTA	p.E76V	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	76					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						TTCTTTCATTTCTTTGTTTTT	0.393000													153	290					0	0	0.014410	0	0
OR7E24	26648	broad.mit.edu	37	19	9362275	9362275	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:9362275T>G	uc002mlb.1	+	1	556	c.556T>G	c.(556-558)TGC>GGC	p.C186G		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGCTCACCTGCTTCAAGGA	0.403000													9	32					0	0	0.008291	0	0
RDH8	50700	broad.mit.edu	37	19	10132218	10132218	+	Silent	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:10132218C>A	uc002mmr.2	+	6	978	c.729C>A	c.(727-729)GTC>GTA	p.V243V		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	243					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	AGGCCATTGTCAACGTCATCA	0.632000													52	96					3.76997e-23	4.62006e-23	0.014410	1	0
UPF1	5976	broad.mit.edu	37	19	18963808	18963808	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:18963808A>G	uc002nkg.2	+	7	1260	c.985A>G	c.(985-987)ATC>GTC	p.I329V	UPF1_uc002nkf.2_Missense_Mutation_p.I329V	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	329	Sufficient for interaction with RENT2.				cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCAAGATAACATCACTGTCAG	0.537000													82	164					0	0	0.014410	0	0
HSD17B14	51171	broad.mit.edu	37	19	49316535	49316535	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:49316535A>C	uc002pkv.1	-	9	976	c.710T>G	c.(709-711)TTC>TGC	p.F237C	BCAT2_uc002pkq.3_5'Flank|BCAT2_uc002pkr.2_5'Flank|BCAT2_uc002pks.2_5'Flank|BCAT2_uc002pkt.2_5'Flank|BCAT2_uc010emh.1_5'Flank|BCAT2_uc010emi.1_5'Flank|BCAT2_uc010emj.1_5'Flank|HSD17B14_uc010emk.1_Missense_Mutation_p.S205A	NM_016246	NP_057330	Q9BPX1	DHB14_HUMAN	dehydrogenase/reductase (SDR family) member 10	237					steroid catabolic process	centrosome|cytosol	estradiol 17-beta-dehydrogenase activity|protein binding|testosterone 17-beta-dehydrogenase (NADP+) activity				0		all_epithelial(76;7e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000341)|all cancers(93;0.000764)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.0346)		GCCCGTGCAGAAGTTGGCTTC	0.677000													17	20					0	0	0.007413	0	0
MYCN	4613	broad.mit.edu	37	2	16086058	16086058	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr2:16086058G>C	uc002rci.2	+	3	1534	c.1234G>C	c.(1234-1236)GTA>CTA	p.V412L	MYCN_uc010yjr.1_Missense_Mutation_p.V404L	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	412	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			GCCGGAGTTGGTAAAGAATGA	0.572000			A		neuroblastoma								147	298					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	2	96521777	96521777	+	Missense_Mutation	SNP	T	C	C	rs77768218		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr2:96521777T>C	uc002suz.1	-	31	2790	c.1313A>G	c.(1312-1314)CAT>CGT	p.H438R						SubName: Full=Putative uncharacterized protein ENSP00000312008; Flags: Fragment;																		AAGGTCTTCATGCTTTCTTTT	0.383000													2	5					0	0	0.004672	0	0
C2orf80	389073	broad.mit.edu	37	2	209045533	209045533	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr2:209045533A>C	uc002vcr.2	-	6	474	c.302T>G	c.(301-303)ATC>AGC	p.I101S		NM_001099334	NP_001092804	Q0P641	CB080_HUMAN	hypothetical protein LOC389073	101										skin(1)	1						CTCAATCGGGATACTGTTCTG	0.363000													24	55					0	0	0.014323	0	0
CHGB	1114	broad.mit.edu	37	20	5903027	5903027	+	Silent	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:5903027A>G	uc002wmg.2	+	4	543	c.237A>G	c.(235-237)ACA>ACG	p.T79T	CHGB_uc010zqz.1_Intron	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	79						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						ATGAAAACACAAAGTTTGAAG	0.453000													42	68					0	0	0.010771	0	0
NKX2-4	644524	broad.mit.edu	37	20	21376576	21376576	+	Silent	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:21376576G>T	uc010gcz.2	-	2	1048	c.1038C>A	c.(1036-1038)GCC>GCA	p.A346A		NM_033176	NP_149416	Q9H2Z4	NKX24_HUMAN	NK2 homeobox 4	346					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGAGCAGGTTGGCGCCCAGGA	0.532000													16	26					9.04412e-07	1.02774e-06	0.004656	1	0
ACTR5	79913	broad.mit.edu	37	20	37400319	37400319	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:37400319G>C	uc002xjd.2	+	9	1709	c.1684G>C	c.(1684-1686)GGA>CGA	p.G562R		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	562					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				AGAAAAGGGAGGAGAGTACCT	0.557000													70	104					0	0	0.014410	0	0
ZNFX1	57169	broad.mit.edu	37	20	47864026	47864027	+	Missense_Mutation	DNP	GT	AG	AG			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:47864026_47864027GT>AG	uc002xui.2	-	14	5781_5782	c.5534_5535AC>CT	c.(5533-5535)CAC>CCT	p.H1845P		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1845							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ACTTGAACCAGTGACCACGAGG	0.545000													76	128					0	0	0.004672	0	0
YTHDF1	54915	broad.mit.edu	37	20	61833792	61833792	+	Silent	SNP	T	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:61833792T>C	uc002yeh.2	-	4	1794	c.1500A>G	c.(1498-1500)AAA>AAG	p.K500K	YTHDF1_uc011aaq.1_Silent_p.K450K	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	500	YTH.									ovary(2)	2						TTGTGACCGGTTTGTTGTCGT	0.483000													26	187					0	0	0.006999	0	0
PRDM15	63977	broad.mit.edu	37	21	43221789	43221789	+	Missense_Mutation	SNP	C	G	G	rs139717863		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr21:43221789C>G	uc002yzq.1	-	31	4246	c.4135G>C	c.(4135-4137)GCG>CCG	p.A1379P	PRDM15_uc002yzo.2_Missense_Mutation_p.A1050P|PRDM15_uc002yzp.2_Missense_Mutation_p.A1070P|PRDM15_uc002yzr.1_Missense_Mutation_p.A1070P	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AACTGAGTCGCGGCCGCAGTG	0.582000													38	65					0	0	0.009718	0	0
CECR2	27443	broad.mit.edu	37	22	18028580	18028580	+	Silent	SNP	T	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr22:18028580T>A	uc010gqw.1	+	16	3663	c.3537T>A	c.(3535-3537)CCT>CCA	p.P1179P	CECR2_uc010gqv.1_Silent_p.P1037P|CECR2_uc002zml.2_Silent_p.P1038P|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1221					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AGCGAACTCCTTACTATGCCT	0.592000													46	87					0	0	0.014410	0	0
GGT3P	2679	broad.mit.edu	37	22	18778640	18778640	+	RNA	SNP	T	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr22:18778640T>C	uc011ago.1	-	2		c.180A>G			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GGTTGTCAGGTTCCTTGGAGG	0.632000													3	12					0	0	0.009096	0	0
RGL4	266747	broad.mit.edu	37	22	24041048	24041048	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr22:24041048A>T	uc002zxn.2	+	11	2570	c.1400A>T	c.(1399-1401)CAG>CTG	p.Q467L	LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Silent_p.P497P|RGL4_uc002zxp.1_3'UTR|RGL4_uc002zxq.2_Missense_Mutation_p.S376C	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation	467	Ras-GEF.				small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						CTGTCCTGCCAGCTGGAGCCC	0.627000													12	26					0	0	0.001855	0	0
EP300	2033	broad.mit.edu	37	22	41572951	41572951	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr22:41572951T>A	uc003azl.3	+	31	5631	c.5236T>A	c.(5236-5238)TGC>AGC	p.C1746S		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1746	Binding region for E1A adenovirus.|TAZ-type 2.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGTCCATGCTTGCCAGTGTCG	0.572000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				40	105					0	0	0.014410	0	0
OGG1	4968	broad.mit.edu	37	3	9793597	9793597	+	Missense_Mutation	SNP	A	G	G	rs144249605	byFrequency	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:9793597A>G	uc003bsi.2	+	3	872	c.529A>G	c.(529-531)ACC>GCC	p.T177A	OGG1_uc003bsh.2_Missense_Mutation_p.T177A|OGG1_uc003bsj.2_Missense_Mutation_p.T177A|OGG1_uc003bsk.2_Missense_Mutation_p.T177A|OGG1_uc003bsl.2_Missense_Mutation_p.T177A|OGG1_uc003bsm.2_Missense_Mutation_p.T177A|OGG1_uc003bsn.2_Missense_Mutation_p.T177A|OGG1_uc003bso.2_Missense_Mutation_p.T177A|OGG1_uc003bsp.1_Silent_p.S2S|OGG1_uc010hcm.1_Missense_Mutation_p.T20A|OGG1_uc003bsq.1_Silent_p.S2S|OGG1_uc003bsr.1_Silent_p.S2S	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	177					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					TGATGATGTCACCTACCATGG	0.572000								BER_DNA_glycosylases					41	92					0	0	0.014410	0	0
MON1A	84315	broad.mit.edu	37	3	49946456	49946456	+	Silent	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:49946456G>A	uc003cxz.2	-	6	2076	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	MON1A_uc003cya.2_Silent_p.L488L|MON1A_uc003cyb.2_3'UTR	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	553							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		ATCAATAGGTGAGGGGCGTGA	0.607000													26	70					0	0	0.009535	0	0
TMF1	7110	broad.mit.edu	37	3	69096707	69096707	+	Silent	SNP	T	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:69096707T>C	uc003dnn.2	-	2	1396	c.1149A>G	c.(1147-1149)ACA>ACG	p.T383T	TMF1_uc011bfx.1_Silent_p.T383T	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	383					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		GTATAACTAATGTTTCATTTA	0.383000													38	61					0	0	0.004878	0	0
GPR128	84873	broad.mit.edu	37	3	100349576	100349576	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:100349576T>G	uc003duc.2	+	3	525	c.257T>G	c.(256-258)ATG>AGG	p.M86R		NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	86	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						AGTACCTATATGGGTTTTACT	0.313000													3	10					0	0	0.004672	0	0
ZBTB11	27107	broad.mit.edu	37	3	101370247	101370247	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:101370247T>G	uc003dve.3	-	11	3155	c.2925A>C	c.(2923-2925)CAA>CAC	p.Q975H		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	975					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CACTGCTTTCTTGTTCCTGCA	0.448000													71	161					0	0	0.014410	0	0
PVRL3	25945	broad.mit.edu	37	3	110830989	110830989	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:110830989G>A	uc003dxt.1	+	2	273	c.273G>A	c.(271-273)TGG>TGA	p.W91*	PVRL3_uc003dxu.1_Nonsense_Mutation_p.W68*	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	91	Extracellular (Potential).|Ig-like V-type.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						AGATTTCATGGGAGAAGATAC	0.378000													3	9					0	0	0.009096	0	0
PIGZ	80235	broad.mit.edu	37	3	196675120	196675120	+	Silent	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:196675120A>T	uc003fxh.2	-	3	795	c.648T>A	c.(646-648)CTT>CTA	p.L216L		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	216	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		CAATGCCTCCAAGAAGCCAGC	0.637000													81	106					0	0	0.014410	0	0
RFC1	5981	broad.mit.edu	37	4	39325032	39325032	+	Silent	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:39325032C>T	uc003gty.1	-	7	782	c.648G>A	c.(646-648)GAG>GAA	p.E216E	RFC1_uc003gtx.1_Silent_p.E216E|RFC1_uc003gtz.1_Silent_p.E100E	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	216					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						GCAACTGCCTCTCCAGCTGTA	0.373000													9	15					0	0	0.008291	0	0
UGT2B7	7364	broad.mit.edu	37	4	69968643	69968643	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:69968643A>T	uc003heg.3	+	3	1035	c.989A>T	c.(988-990)CAG>CTG	p.Q330L	UGT2B7_uc010ihq.2_Missense_Mutation_p.Q330L	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	330					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GCCCTGGCCCAGATCCCACAA	0.428000													14	31					0	0	0.004007	0	0
ANTXR2	118429	broad.mit.edu	37	4	80992809	80992809	+	Splice_Site	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:80992809C>A	uc003hlz.3	-	2	916	c.153_splice	c.e2-1	p.K51_splice	ANTXR2_uc003hly.3_Splice_Site_p.K51_splice|ANTXR2_uc003hlx.1_Splice_Site|ANTXR2_uc010ijn.2_Splice_Site_p.K51_splice	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2							endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						ACTCCCAGACCTGAAAGATGA	0.383000									Juvenile_Hyaline_Fibromatosis				19	50					5.35267e-07	6.13838e-07	0.007413	1	0
C4orf37	285555	broad.mit.edu	37	4	98865112	98865112	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:98865112T>G	uc003htt.1	-	8	1070	c.980A>C	c.(979-981)AAC>ACC	p.N327T		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	327											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GTTAGTCAAGTTAGGTAATTC	0.323000													8	18					0	0	0.004482	0	0
NPY2R	4887	broad.mit.edu	37	4	156136059	156136059	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:156136059T>G	uc003ioq.2	+	2	1463	c.968T>G	c.(967-969)CTT>CGT	p.L323R	NPY2R_uc003ior.2_Missense_Mutation_p.L323R	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	323	Helical; Name=7; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GCCAATCCCCTTCTCTATGGC	0.527000													56	114					0	0	0.014410	0	0
FAT1	2195	broad.mit.edu	37	4	187549407	187549407	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr4:187549407C>A	uc003izf.2	-	9	4899	c.4711G>T	c.(4711-4713)GTT>TTT	p.V1571F		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1571	Extracellular (Potential).|Cadherin 14.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GATTCATAAACCCGCCCTTTG	0.527000										HNSCC(5;0.00058)			23	34					9.65021e-13	1.14883e-12	0.010818	1	0
CDH9	1007	broad.mit.edu	37	5	26906161	26906161	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:26906161C>T	uc003jgs.1	-	5	887	c.718G>A	c.(718-720)GAC>AAC	p.D240N	CDH9_uc010iug.2_Missense_Mutation_p.D240N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	240	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCACCCATGTCTTTGGCCTGT	0.448000													11	35					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	5	79655221	79655221	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:79655221T>C	uc003kgo.2	-	1	687	c.524A>G	c.(523-525)AAT>AGT	p.N175S						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		aaagttgtcattcccaccgaa	0.174000													5	65					0	0	0.001168	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													5	17					0	0	0.001168	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908303	139908303	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:139908303G>C	uc003lfs.1	+	29	5896	c.5772G>C	c.(5770-5772)GAG>GAC	p.E1924D	ANKHD1_uc003lfr.2_Missense_Mutation_p.E1924D|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.E663D|ANKHD1_uc003lfw.2_Missense_Mutation_p.E562D|ANKHD1_uc010jfl.2_Missense_Mutation_p.E359D|ANKHD1-EIF4EBP3_uc003lfx.1_Missense_Mutation_p.E61D	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1924						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TACCCTCAGAGTCTGCTGGAC	0.488000													4	35					0	0	0.009096	0	0
PCDHA4	56144	broad.mit.edu	37	5	140186954	140186954	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:140186954C>T	uc003lhi.2	+	1	283	c.182C>T	c.(181-183)CCG>CTG	p.P61L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.P61L|PCDHA4_uc011daa.1_Missense_Mutation_p.P61L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	61	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGGTGCCGCGCCTGTTC	0.632000													22	204					0	0	0.003330	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221088	140221088	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:140221088C>T	uc003lhs.2	+	1	182	c.182C>T	c.(181-183)CCG>CTG	p.P61L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.P61L	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	61	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGGTGCCGCGCCTGTTC	0.637000													6	225					0	0	0.008871	0	0
MED7	9443	broad.mit.edu	37	5	156565887	156565887	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr5:156565887T>G	uc010jik.2	-	2	948	c.556A>C	c.(556-558)ACT>CCT	p.T186P	MED7_uc003lwm.3_Missense_Mutation_p.T186P	NM_001100816	NP_001094286	O43513	MED7_HUMAN	mediator complex subunit 7	186					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	protein binding|transcription coactivator activity				0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			ATTGGTTCAGTTTTTACTCTC	0.373000													42	71					0	0	0.006999	0	0
SLC25A27	9481	broad.mit.edu	37	6	46630133	46630133	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr6:46630133T>C	uc003oyh.2	+	4	655	c.404T>C	c.(403-405)ATG>ACG	p.M135T	SLC25A27_uc011dwb.1_Missense_Mutation_p.M135T|SLC25A27_uc003oyg.2_Missense_Mutation_p.M135T|SLC25A27_uc011dwc.1_Missense_Mutation_p.M49T|SLC25A27_uc003oyi.2_Missense_Mutation_p.M65T	NM_004277	NP_004268	O95847	UCP4_HUMAN	solute carrier family 25, member 27	135	Solcar 2.|Helical; Name=3; (Potential).				generation of precursor metabolites and energy|transport	integral to membrane|mitochondrial inner membrane					0			Lung(136;0.192)			ATTGGAGGGATGATGGCTGGT	0.388000													6	25					0	0	0.006214	0	0
SLC22A16	85413	broad.mit.edu	37	6	110757106	110757106	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr6:110757106G>A	uc003puf.2	-	6	1437	c.1370C>T	c.(1369-1371)GCA>GTA	p.A457V	SLC22A16_uc003pue.2_Missense_Mutation_p.A438V	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	457	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GAGGCCAAATGCTGCCCCGAT	0.363000													34	70					0	0	0.003271	0	0
MAP7	9053	broad.mit.edu	37	6	136709627	136709627	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr6:136709627G>A	uc003qgz.2	-	5	676	c.430C>T	c.(430-432)CGG>TGG	p.R144W	MAP7_uc011edf.1_Missense_Mutation_p.R129W|MAP7_uc011edg.1_Missense_Mutation_p.R166W|MAP7_uc010kgu.2_Missense_Mutation_p.R166W|MAP7_uc011edh.1_Missense_Mutation_p.R166W|MAP7_uc010kgv.2_Missense_Mutation_p.R166W|MAP7_uc010kgs.2_Translation_Start_Site|MAP7_uc011edi.1_Translation_Start_Site|MAP7_uc010kgq.1_Intron|MAP7_uc003qha.1_Missense_Mutation_p.R144W|MAP7_uc010kgr.2_Translation_Start_Site|MAP7_uc010kgt.2_Missense_Mutation_p.R166W	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	144	Potential.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		ATTGTGCGCCGTACAACAGCT	0.498000													44	86					0	0	0.009718	0	0
SYNJ2	8871	broad.mit.edu	37	6	158449969	158449969	+	Silent	SNP	A	T	T	rs140060886		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr6:158449969A>T	uc003qqx.1	+	3	471	c.396A>T	c.(394-396)TCA>TCT	p.S132S	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Silent_p.S132S|SYNJ2_uc003qqy.1_5'UTR|SYNJ2_uc011efn.1_Silent_p.S81S|SYNJ2_uc010kjo.1_Silent_p.S81S	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	132	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		TCTATTTCTCATGGCCAAACG	0.542000													64	146					0	0	0.014410	0	0
MAD1L1	8379	broad.mit.edu	37	7	2020096	2020096	+	Silent	SNP	G	A	A	rs113127342	by1000genomes	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:2020096G>A	uc003slh.1	-	15	1763	c.1497C>T	c.(1495-1497)GAC>GAT	p.D499D	MAD1L1_uc003sle.1_Silent_p.D228D|MAD1L1_uc003slf.1_Silent_p.D499D|MAD1L1_uc003slg.1_Silent_p.D499D|MAD1L1_uc010ksh.1_Silent_p.D499D|MAD1L1_uc003sli.1_Silent_p.D407D|MAD1L1_uc010ksi.1_Silent_p.D452D|MAD1L1_uc010ksj.2_Silent_p.D499D	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	499	Necessary for interaction with NEK2.|Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		ACCTGAGCGTGTCCGCCTCCT	0.617000													5	52					0	0	0.001984	0	0
DGKB	1607	broad.mit.edu	37	7	14712573	14712573	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:14712573G>T	uc003ssz.2	-	12	1302	c.1115C>A	c.(1114-1116)ACA>AAA	p.T372K	DGKB_uc011jxt.1_Missense_Mutation_p.T365K|DGKB_uc003sta.2_Missense_Mutation_p.T372K|DGKB_uc011jxu.1_Missense_Mutation_p.T372K	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	372					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGGACAGATTGTTGTGGGTGG	0.383000													2	0					0.0016	0.00172414	0.004672	1	0
NOD1	10392	broad.mit.edu	37	7	30475651	30475651	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:30475651T>A	uc003tav.2	-	11	3107	c.2584A>T	c.(2584-2586)AGG>TGG	p.R862W		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	862	LRR 6.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						TGCAGGGCCCTCGCAAGGCTC	0.368000													43	99					0	0	0.014410	0	0
EIF4H	7458	broad.mit.edu	37	7	73601993	73601993	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:73601993A>G	uc003uad.1	+	2	120	c.112A>G	c.(112-114)ACA>GCA	p.T38A	RFC2_uc011kfa.1_Intron|EIF4H_uc011kfg.1_Missense_Mutation_p.T38A|EIF4H_uc010lbm.2_Missense_Mutation_p.T38A|EIF4H_uc003uae.1_Missense_Mutation_p.T38A|EIF4H_uc003uaf.1_Intron	NM_022170	NP_071496	Q15056	IF4H_HUMAN	eukaryotic translation initiation factor 4H	38					interspecies interaction between organisms|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0						GGAGTTGCCCACAGAGCCCCC	0.527000													110	240					0	0	0.014410	0	0
POR	5447	broad.mit.edu	37	7	75615481	75615481	+	Missense_Mutation	SNP	A	G	G	rs72557954		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:75615481A>G	uc003udy.2	+	15	1902	c.1820A>G	c.(1819-1821)TAC>TGC	p.Y607C	POR_uc011kgc.1_Missense_Mutation_p.Y415C|POR_uc011kgd.1_Missense_Mutation_p.Y506C|POR_uc011kge.1_Missense_Mutation_p.Y345C|POR_uc003uea.2_Missense_Mutation_p.Y94C	NM_000941	NP_000932	P16435	NCPR_HUMAN	cytochrome P450 reductase	604					cellular organofluorine metabolic process|positive regulation of monooxygenase activity	endoplasmic reticulum membrane	iron ion binding|NADPH-hemoprotein reductase activity			central_nervous_system(1)	1					Benzphetamine(DB00865)|Daunorubicin(DB00694)|Lipoic Acid(DB00166)|Menadione(DB00170)|Methoxyflurane(DB01028)|Mitomycin(DB00305)|Nilutamide(DB00665)	CCCCAGGTCTACGTCCAGCAC	0.632000													16	17					0	0	0.006122	0	0
BAIAP2L1	55971	broad.mit.edu	37	7	97933661	97933661	+	Silent	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:97933661G>A	uc003upj.2	-	12	1532	c.1269C>T	c.(1267-1269)ACC>ACT	p.T423T		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	423					filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			ACAAGTTCACGGTGCTGATGC	0.537000													42	166					0	0	0.010771	0	0
POLR2J	5439	broad.mit.edu	37	7	102119282	102119282	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:102119282G>C	uc003uzp.1	-	1	100	c.26C>G	c.(25-27)TCG>TGG	p.S9W		NM_006234	NP_006225	P52435	RPB11_HUMAN	DNA directed RNA polymerase II polypeptide J	9					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|LRR domain binding|protein dimerization activity			pancreas(1)	1						GAGCAAGAACGACTCGAAGGC	0.682000											OREG0018232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	153					0	0	0.003163	0	0
ANKRD7	56311	broad.mit.edu	37	7	117879989	117879989	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:117879989C>A	uc003vji.2	+	6	912	c.739C>A	c.(739-741)CAT>AAT	p.H247N		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	247					male gonad development						0						CACTGCGAGCCATGGAAAGAA	0.338000													26	145					2.12542e-12	2.50639e-12	0.006320	1	0
PRKAG2	51422	broad.mit.edu	37	7	151262972	151262972	+	Splice_Site	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:151262972C>T	uc003wkk.2	-	12	1845	c.1234_splice	c.e12-1	p.M412_splice	PRKAG2_uc003wki.2_Splice_Site_p.M171_splice|PRKAG2_uc011kvl.1_Splice_Site_p.M287_splice|PRKAG2_uc003wkj.2_Splice_Site_p.M368_splice|PRKAG2_uc003wkl.2_Intron	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit						ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TATCAGACATCTAAACGGAAG	0.418000													27	52					0	0	0.006320	0	0
FAM84B	157638	broad.mit.edu	37	8	127569250	127569250	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr8:127569250G>C	uc003yrz.1	-	2	669	c.385C>G	c.(385-387)CAG>GAG	p.Q129E		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	129						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			TGCGGGTACTGAGCCTGCGAC	0.637000													35	93					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	9	68414259	68414259	+	RNA	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr9:68414259C>T	uc004aex.2	+	1		c.814C>T								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		ccacagtggcctcaaagaact	0.254000													4	8					0	0	0.000602	0	0
C9orf79	286234	broad.mit.edu	37	9	90501484	90501484	+	Silent	SNP	C	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr9:90501484C>T	uc004app.3	+	4	2117	c.2082C>T	c.(2080-2082)ACC>ACT	p.T694T	C9orf79_uc004apo.1_Silent_p.T506T	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	694						integral to membrane				ovary(3)	3						TGCAGAAGACCGGGTTCAGGA	0.612000													15	146					0	0	0.014410	0	0
NUP214	8021	broad.mit.edu	37	9	134010301	134010301	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr9:134010301A>T	uc004cag.2	+	8	959	c.848A>T	c.(847-849)CAC>CTC	p.H283L	NUP214_uc004cah.2_Missense_Mutation_p.H283L|NUP214_uc004caf.1_Missense_Mutation_p.H283L	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	283					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		GAAGAAAAGCACCCAGAGATA	0.378000			T	DEK|SET|ABL1	AML|T-ALL								14	31					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	MT	9010	9010	+	RNA	SNP	G	A	A			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chrM:9010G>A	uc011mfi.1	+	1		c.348G>A			uc004cov.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		TACGCCTAACCGCTAACATTA	0.468000													30	2					0	0	0.005524	0	0
TREX2	11219	broad.mit.edu	37	X	152710189	152710189	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chrX:152710189G>T	uc010nue.1	-	3	942	c.826C>A	c.(826-828)CTG>ATG	p.L276M	TREX2_uc010nud.1_Missense_Mutation_p.L234M|TREX2_uc011myp.1_Missense_Mutation_p.L234M|HAUS7_uc004fhl.2_RNA|HAUS7_uc004fhm.2_RNA	NM_080701	NP_542432	Q9BQ50	TREX2_HUMAN	three prime repair exonuclease 2	277					DNA repair	nucleus	3'-5'-exodeoxyribonuclease activity|exodeoxyribonuclease III activity|nucleic acid binding			large_intestine(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CAGGCCTCCAGGCTGGGGTCA	0.687000								Editing_and_processing_nucleases					5	8					1.23904e-05	1.38286e-05	0.000602	1	0
CA6	765	broad.mit.edu	37	1	9009376	9009376	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:9009376delA	uc001apm.2	+	2	158	c.134delA	c.(133-135)CAGfs	p.Q45fs	CA6_uc009vmn.2_Intron	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	45					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TGTGGGGGCCAGAGACAGTCG	0.602													59	95	---	---	---	---					
PABPC4	8761	broad.mit.edu	37	1	40038242	40038242	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr1:40038242delG	uc010oiv.1	-	2	1108	c.210delC	c.(208-210)GACfs	p.D70fs	PABPC4_uc001cdl.2_Frame_Shift_Del_p.D70fs|PABPC4_uc001cdm.2_Frame_Shift_Del_p.D70fs	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	70	RRM 1.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			AGTTCATGGTGTCCAAAGCCC	0.468													34	85	---	---	---	---					
LRRC4C	57689	broad.mit.edu	37	11	40136626	40136630	+	Frame_Shift_Del	DEL	AGCAC	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:40136626_40136630delAGCAC	uc001mxa.1	-	2	3177_3181	c.1213_1217delGTGCT	c.(1213-1218)GTGCTCfs	p.V405fs	LRRC4C_uc001mxc.1_Frame_Shift_Del_p.V401fs|LRRC4C_uc001mxd.1_Frame_Shift_Del_p.V401fs|LRRC4C_uc001mxb.1_Frame_Shift_Del_p.V401fs	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	405_406	Ig-like C2-type.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				ACCATCACTGAGCACAGCTATCCGC	0.454													50	174	---	---	---	---					
FGF3	2248	broad.mit.edu	37	11	69625463	69625464	+	Frame_Shift_Ins	INS	-	T	T			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr11:69625463_69625464insT	uc001oph.2	-	3	820_821	c.329_330insA	c.(328-330)CACfs	p.H110fs		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	110					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			CGGCGCTGTAGTGCTCCTGCGG	0.639													54	117	---	---	---	---					
CLEC4D	338339	broad.mit.edu	37	12	8667926	8667932	+	Splice_Site	DEL	TAAGTTA	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:8667926_8667932delTAAGTTA	uc001qun.2	+	2	314	c.121_splice	c.e2+2	p.V41_splice		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D						innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					GTTGTTTGGGTAAGTTATTAGCCAAAG	0.372													8	32	---	---	---	---					
ITGA7	3679	broad.mit.edu	37	12	56096870	56096870	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:56096870delT	uc001shh.2	-	2	519	c.299delA	c.(298-300)GAGfs	p.E100fs	ITGA7_uc001shg.2_Frame_Shift_Del_p.E100fs|ITGA7_uc010sps.1_Intron|ITGA7_uc009znx.2_5'Flank	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	100	FG-GAP 1.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCAGTCAGTCTCCTCCAGGCT	0.642													130	236	---	---	---	---					
KIAA1033	23325	broad.mit.edu	37	12	105512257	105512259	+	In_Frame_Del	DEL	GTG	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr12:105512257_105512259delGTG	uc001tld.2	+	7	556_558	c.469_471delGTG	c.(469-471)GTGdel	p.V158del	KIAA1033_uc010swr.1_In_Frame_Del_p.V158del|KIAA1033_uc010sws.1_5'UTR	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	158					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						GTGCTATGAAGTGGTGATGAACG	0.340													11	25	---	---	---	---					
ZIC2	7546	broad.mit.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr13:100635008_100635010delCCA	uc001von.2	+	1	690_692	c.690_692delCCA	c.(688-693)GCCCAC>GCC	p.H239del		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	239	Necessary for interaction with MDFIC and transcriptional activation or repression (By similarity).|Poly-His.		Missing.|H -> HH.		brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CAGCCGCGGCccaccaccaccac	0.522													7	111	---	---	---	---					
OCA2	4948	broad.mit.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr15:28200305delT	uc001zbh.3	-	17	1951	c.1841delA	c.(1840-1842)AAGfs	p.K614fs	OCA2_uc010ayv.2_Frame_Shift_Del_p.K590fs	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	614	Cytoplasmic (Potential).		K -> N (in OCA2).|K -> E (in OCA2).		eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GCTGGGTACCTTTTTTTGGAG	0.443									Oculocutaneous_Albinism				7	509	---	---	---	---					
SLC16A13	201232	broad.mit.edu	37	17	6942168	6942169	+	In_Frame_Ins	INS	-	ATA	ATA			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr17:6942168_6942169insATA	uc002geh.2	+	3	1349_1350	c.1041_1042insATA	c.(1039-1044)insATA	p.348_349insI		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	348_349	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						TGTTGCAGATGATAGAGAGCAT	0.495													118	342	---	---	---	---					
RAB11B	9230	broad.mit.edu	37	19	8468330	8468331	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:8468330_8468331delCA	uc002mju.3	+	5	641_642	c.545_546delCA	c.(544-546)GCAfs	p.A182fs		NM_004218	NP_004209	Q15907	RB11B_HUMAN	RAB11B, member RAS oncogene family	182					cell cycle|protein transport|small GTPase mediated signal transduction	plasma membrane	GDP binding|GTP binding|GTPase activity				0						AAACAGATCGCAGACCGCGCTG	0.653													75	182	---	---	---	---					
DOCK6	57572	broad.mit.edu	37	19	11324999	11325018	+	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr19:11324999_11325018delGGCACTCTGGGCACTGCCCA	uc002mqs.3	-	34	4312_4331	c.4271_4290delTGGGCAGTGCCCAGAGTGCC	c.(4270-4290)CTGGGCAGTGCCCAGAGTGCCfs	p.L1424fs	DOCK6_uc010xlq.1_Frame_Shift_Del_p.L763fs	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1424_1430					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GCAAGAAGAGGGCACTCTGGGCACTGCCCAGGCTGTACAG	0.559													14	103	---	---	---	---					
LCLAT1	253558	broad.mit.edu	37	2	30863165	30863173	+	In_Frame_Del	DEL	GAAGAGAAA	-	-	rs150085223		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr2:30863165_30863173delGAAGAGAAA	uc002rnj.2	+	7	1134_1142	c.925_933delGAAGAGAAA	c.(925-933)GAAGAGAAAdel	p.EEK309del	LCLAT1_uc010ymp.1_In_Frame_Del_p.EEK147del|LCLAT1_uc002rnl.2_In_Frame_Del_p.EEK271del|LCLAT1_uc010ymq.1_In_Frame_Del_p.EEK271del	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	309_311					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						CAAACGGTGGGAAGAGAAAGAAGAGAGGC	0.498													23	165	---	---	---	---					
MAT2A	4144	broad.mit.edu	37	2	85769094	85769097	+	Splice_Site	DEL	AAGT	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr2:85769094_85769097delAAGT	uc002spr.2	+	5	672	c.549_splice	c.e5+1	p.Q183_splice	MAT2A_uc010ysr.1_Splice_Site_p.Q183_splice|MAT2A_uc010fgk.2_Splice_Site_p.Q157_splice|MAT2A_uc010fgl.2_Splice_Site_p.Q120_splice|MAT2A_uc010fgm.1_3'UTR	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha						methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TCTAAAACTCAAGTAAGTGATGAT	0.382													13	39	---	---	---	---					
CEP250	11190	broad.mit.edu	37	20	34091451	34091451	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr20:34091451delA	uc002xcm.2	+	31	5925	c.5254delA	c.(5254-5256)AAAfs	p.K1752fs	CEP250_uc010zve.1_Frame_Shift_Del_p.K1120fs	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1752	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			CCAGGAGCTCAAAGACCAGCT	0.577													105	212	---	---	---	---					
C3orf17	25871	broad.mit.edu	37	3	112736366	112736368	+	In_Frame_Del	DEL	CAT	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr3:112736366_112736368delCAT	uc003dzr.2	-	2	249_251	c.188_190delATG	c.(187-192)GATGTG>GTG	p.D63del	C3orf17_uc011bhz.1_Intron|C3orf17_uc010hqh.2_Intron|C3orf17_uc003dzt.2_Intron|C3orf17_uc003dzs.2_Intron|C3orf17_uc010hqg.2_5'UTR|C3orf17_uc011bia.1_Intron|C3orf17_uc003dzu.2_In_Frame_Del_p.D62del|C3orf17_uc011bib.1_Intron|C3orf17_uc011bic.1_Intron|C3orf17_uc011bid.1_RNA	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	63						integral to membrane					0						GCACATAACACATCTGTTTCTGC	0.478													23	64	---	---	---	---					
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	Frame_Shift_Del	DEL	AGAGCTCC	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr7:74300557_74300564delAGAGCTCC	uc003ubj.3	-	5	625_632	c.243_250delGGAGCTCT	c.(241-252)CTGGAGCTCTTCfs	p.L81fs	STAG3L2_uc011kfj.1_RNA	NM_001025202	NP_001020373	P0CL84	ST3L2_HUMAN	STAG3-like	81_84	SCD.					nucleus	binding				0						CGGCCAGTGAAGAGCTCCAGGCGTGCGG	0.572													8	20	---	---	---	---					
SEC16A	9919	broad.mit.edu	37	9	139369195	139369195	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	g.chr9:139369195delG	uc004chx.2	-	3	3182	c.2873delC	c.(2872-2874)CCTfs	p.P958fs	SEC16A_uc004chv.3_Intron|SEC16A_uc004chw.2_Frame_Shift_Del_p.P958fs|SEC16A_uc010nbn.2_Frame_Shift_Del_p.P958fs|SEC16A_uc010nbo.1_Frame_Shift_Del_p.P958fs	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	780					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GCTTCCAGCAGGGCTATTAGC	0.507													76	138	---	---	---	---					
