Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZBTB8OS	339487	broad.mit.edu	37	1	33099257	33099257	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:33099257A>C	uc001bvp.2	-	4	371	c.352T>G	c.(352-354)TTC>GTC	p.F118V	ZBTB8OS_uc001bvo.1_Intron|ZBTB8OS_uc001bvq.2_Missense_Mutation_p.F106V	NM_178547	NP_848642	Q8IWT0	ARCH_HUMAN	zinc finger and BTB domain containing 8 opposite	106											0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CGGGGTATGAAGAATTCATCA	0.313000													31	21					0	0	0.003271	0	0
RLF	6018	broad.mit.edu	37	1	40701983	40701983	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:40701983G>A	uc001cfc.3	+	8	1640	c.1609G>A	c.(1609-1611)GAC>AAC	p.D537N	RLF_uc001cfd.3_Missense_Mutation_p.D228N	NM_012421	NP_036553	Q13129	RLF_HUMAN	rearranged L-myc fusion	537					chromosome organization|DNA integration|DNA mediated transformation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			ovary(2)|pancreas(1)	3	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;5.87e-19)|Epithelial(16;7.02e-16)|all cancers(16;1.69e-14)|Lung(16;0.0427)|LUSC - Lung squamous cell carcinoma(16;0.0461)			GGAGAAAAGAGACAAAAAACC	0.358000													25	55					0	0	0.006320	0	0
TMEM53	79639	broad.mit.edu	37	1	45120714	45120714	+	Silent	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:45120714G>T	uc001cmc.2	-	3	387	c.351C>A	c.(349-351)GTC>GTA	p.V117V	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Silent_p.V44V|TMEM53_uc009vxh.1_5'UTR|TMEM53_uc010ola.1_5'UTR	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	117						integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					GGTACAGCATGACGCCACCGT	0.577000											OREG0013446	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	16					2.21704e-12	2.76445e-12	0.002780	1	0
TIPRL	261726	broad.mit.edu	37	1	168168189	168168189	+	Silent	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:168168189G>A	uc001gfg.2	+	6	790	c.645G>A	c.(643-645)ACG>ACA	p.T215T	TIPRL_uc001gfh.2_Silent_p.T215T	NM_152902	NP_690866	O75663	TIPRL_HUMAN	TIP41, TOR signalling pathway regulator-like	215	Interaction with PPP2CA.				DNA damage checkpoint|negative regulation of protein phosphatase type 2A activity	cytoplasm	protein binding			ovary(1)	1	all_hematologic(923;0.215)					GAGAATATACGTCACGAGAAA	0.259000													8	30					0	0	0.008291	0	0
KLHDC8A	55220	broad.mit.edu	37	1	205312513	205312513	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:205312513C>T	uc001hcf.1	-	2	788	c.220G>A	c.(220-222)GTC>ATC	p.V74I	KLHDC8A_uc010prg.1_Intron|KLHDC8A_uc001hcg.1_Missense_Mutation_p.V74I	NM_018203	NP_060673	Q8IYD2	KLD8A_HUMAN	kelch domain containing 8A	74	Kelch 2.									ovary(1)	1	Breast(84;0.23)		BRCA - Breast invasive adenocarcinoma(75;0.117)			AGGGCGGTGACGGCCACCCCC	0.672000													47	101					0	0	0.014410	0	0
KIAA1217	56243	broad.mit.edu	37	10	24508666	24508666	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr10:24508666G>T	uc001iru.3	+	2	585	c.182G>T	c.(181-183)CGC>CTC	p.R61L	KIAA1217_uc001irs.2_5'UTR|KIAA1217_uc001irt.3_Missense_Mutation_p.R61L|KIAA1217_uc010qcy.1_Missense_Mutation_p.R61L|KIAA1217_uc010qcz.1_Missense_Mutation_p.R61L	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	61					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AAGTCTTCCCGCAATATCCCA	0.498000													21	69					1.40151e-16	1.81478e-16	0.010504	1	0
EPC1	80314	broad.mit.edu	37	10	32580239	32580239	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr10:32580239C>G	uc001iwg.1	-	6	1097	c.827G>C	c.(826-828)GGC>GCC	p.G276A	EPC1_uc001iwi.3_Missense_Mutation_p.G226A|EPC1_uc009xlt.2_Missense_Mutation_p.G226A|EPC1_uc001iwh.1_Missense_Mutation_p.G276A	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	276					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				ATTGTAGTCGCCCAAATTATA	0.259000													23	125					0	0	0.003330	0	0
OSBPL5	114879	broad.mit.edu	37	11	3141834	3141834	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr11:3141834G>C	uc001lxk.2	-	6	581	c.423C>G	c.(421-423)AGC>AGG	p.S141R	OSBPL5_uc010qxq.1_Missense_Mutation_p.S93R|OSBPL5_uc009ydw.2_Intron|OSBPL5_uc001lxl.2_Intron|OSBPL5_uc009ydx.2_Missense_Mutation_p.S165R	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	141	PH.				cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		GCTTGGTCCAGCTCTTCAGGG	0.677000													31	23					0	0	0.010818	0	0
OR8H3	390152	broad.mit.edu	37	11	55890629	55890629	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr11:55890629A>G	uc001nii.1	+	1	781	c.781A>G	c.(781-783)AAG>GAG	p.K261E		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					TACTTACTTAAAGCCAAGAAA	0.373000													51	53					0	0	0.014410	0	0
IFLTD1	160492	broad.mit.edu	37	12	25702289	25702289	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr12:25702289C>A	uc001rgs.2	-	2	368	c.218G>T	c.(217-219)GGT>GTT	p.G73V	IFLTD1_uc001rgt.1_5'UTR|IFLTD1_uc010sji.1_Missense_Mutation_p.G94V|IFLTD1_uc010sjj.1_Intron|IFLTD1_uc009zjc.2_Missense_Mutation_p.G94V	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	73						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					GGAACAGCTACCTACAGTAGC	0.353000													17	42					1.99824e-07	2.40264e-07	0.004990	1	0
ALG10B	144245	broad.mit.edu	37	12	38714192	38714192	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr12:38714192T>C	uc001rln.3	+	3	738	c.599T>C	c.(598-600)GTC>GCC	p.V200A	ALG10B_uc001rlo.3_Missense_Mutation_p.V170A|ALG10B_uc010skk.1_Missense_Mutation_p.V140A	NM_001013620	NP_001013642	Q5I7T1	AG10B_HUMAN	asparagine-linked glycosylation 10 homolog B	200	Cytoplasmic (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane|plasma membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|skin(1)	3	Esophageal squamous(101;0.187)	Lung NSC(34;0.204)|all_lung(34;0.235)				GCAGGGAATGTCATTGCACAA	0.388000													129	265					0	0	0.014410	0	0
GCN1L1	10985	broad.mit.edu	37	12	120582190	120582190	+	Silent	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr12:120582190G>T	uc001txo.2	-	42	5428	c.5415C>A	c.(5413-5415)ATC>ATA	p.I1805I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1805	HEAT 13.				regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGTACATGGAGATAACCCGCT	0.597000													21	57					1.96292e-10	2.38862e-10	0.010504	1	0
HPD	3242	broad.mit.edu	37	12	122292680	122292680	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr12:122292680C>T	uc001ubj.2	-	7	383	c.343G>A	c.(343-345)GCC>ACC	p.A115T	HPD_uc001ubk.2_Missense_Mutation_p.A76T	NM_002150	NP_002141	P32754	HPPD_HUMAN	4-hydroxyphenylpyruvate dioxygenase	115					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000105)|Epithelial(86;0.000352)|BRCA - Breast invasive adenocarcinoma(302;0.225)	Nitisinone(DB00348)	ATGATTTTGGCGCCCCGTTCC	0.602000													4	98					0	0	0.009096	0	0
C13orf23	80209	broad.mit.edu	37	13	39596542	39596542	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr13:39596542A>T	uc001uwy.2	-	9	1524	c.651T>A	c.(649-651)TAT>TAA	p.Y217*	C13orf23_uc001uwz.2_Nonsense_Mutation_p.Y195*	NM_025138	NP_079414	Q86XN7	CM023_HUMAN	hypothetical protein LOC80209 isoform 1	217	Pro-rich.									ovary(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)	5		Lung NSC(96;6.01e-07)|Breast(139;0.00394)|Prostate(109;0.00676)|Lung SC(185;0.0548)|Hepatocellular(188;0.114)		all cancers(112;3.7e-08)|Epithelial(112;4.28e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00114)|BRCA - Breast invasive adenocarcinoma(63;0.00366)|GBM - Glioblastoma multiforme(144;0.0146)		CTGCATTGTTATAAGCACCTA	0.378000													59	60					0	0	0.014410	0	0
TRIM9	114088	broad.mit.edu	37	14	51475908	51475908	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr14:51475908T>C	uc001wyx.3	-	5	1961	c.1196A>G	c.(1195-1197)CAG>CGG	p.Q399R	TRIM9_uc001wyy.2_Missense_Mutation_p.Q399R|TRIM9_uc001wyz.3_Missense_Mutation_p.Q399R	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	399	COS.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					TTTACCCCACTGATCCTCAGT	0.488000													42	81					0	0	0.008740	0	0
SPTLC2	9517	broad.mit.edu	37	14	77984506	77984506	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr14:77984506A>T	uc001xub.2	-	11	1632	c.1444T>A	c.(1444-1446)TTT>ATT	p.F482I		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	482						integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TCCCGTCCAAAGGCGCTGCAA	0.498000													3	60					0	0	0.004672	0	0
USP50	373509	broad.mit.edu	37	15	50835960	50835960	+	Silent	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr15:50835960G>A	uc001zyq.3	-	3	474	c.294C>T	c.(292-294)GCC>GCT	p.A98A		NM_203494	NP_987090	E9PP86	E9PP86_HUMAN	ubiquitin specific protease 50	93					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			lung(1)|breast(1)	2				all cancers(107;0.000519)|GBM - Glioblastoma multiforme(94;0.00288)		TCATCAGATAGGCAAAAGCAG	0.453000													2	7					0	0	0.004672	0	0
CLN6	54982	broad.mit.edu	37	15	68510982	68510982	+	Silent	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr15:68510982G>T	uc002arf.2	-	2	248	c.90C>A	c.(88-90)GGC>GGA	p.G30G	CLN6_uc010ujy.1_5'UTR|CLN6_uc010ujz.1_Silent_p.G62G	NM_017882	NP_060352	Q9NWW5	CLN6_HUMAN	CLN6 protein	30					cell death|cholesterol metabolic process|ganglioside metabolic process|glycosaminoglycan metabolic process|lysosomal lumen acidification|positive regulation of proteolysis|protein catabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	protein homodimerization activity				0						CGCTCACAGAGCCATGCCTGG	0.567000													6	62					8.12818e-05	9.12163e-05	0.001984	1	0
ADAMTS7	11173	broad.mit.edu	37	15	79064138	79064138	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr15:79064138G>A	uc002bej.3	-	15	2376	c.2165C>T	c.(2164-2166)GCA>GTA	p.A722V	ADAMTS7_uc010und.1_Intron|ADAMTS7_uc002bek.1_Missense_Mutation_p.A722V	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	722	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						GATCTCGCGTGCGCCCGCTGG	0.622000													15	17					0	0	0.007413	0	0
IL16	3603	broad.mit.edu	37	15	81598328	81598328	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr15:81598328G>A	uc002bgh.3	+	17	3876	c.3500G>A	c.(3499-3501)GGC>GAC	p.G1167D	IL16_uc010blq.1_Missense_Mutation_p.G1121D|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.G1209D|IL16_uc002bgg.2_Missense_Mutation_p.G1167D|IL16_uc002bgi.1_Missense_Mutation_p.G557D|IL16_uc002bgj.2_Missense_Mutation_p.G661D|IL16_uc002bgk.2_Missense_Mutation_p.G466D|IL16_uc002bgl.1_Missense_Mutation_p.G466D|IL16_uc010unq.1_Missense_Mutation_p.G466D	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	1167	PDZ 3.|Interaction with PPP1R12A, PPP1R12B and PPP1R12C.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TCCATCAACGGCAAGTCTCTC	0.542000													5	178					0	0	0.001168	0	0
EARS2	124454	broad.mit.edu	37	16	23540828	23540828	+	Silent	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr16:23540828C>T	uc002dlt.3	-	7	1379	c.1347G>A	c.(1345-1347)GTG>GTA	p.V449V	EARS2_uc002dlr.3_RNA|EARS2_uc002dls.3_RNA|EARS2_uc002dlu.2_Silent_p.V449V	NM_001083614	NP_001077083	Q5JPH6	SYEM_HUMAN	glutamyl-tRNA synthetase 2 precursor	449					glutamyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|glutamate-tRNA ligase activity|RNA binding				0				GBM - Glioblastoma multiforme(48;0.0353)	L-Glutamic Acid(DB00142)	CTCACCCCAGCACACGCTTGG	0.607000													12	30					0	0	0.013537	0	0
STX4	6810	broad.mit.edu	37	16	31050905	31050905	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr16:31050905C>T	uc002eal.2	+	9	970	c.746C>T	c.(745-747)GCG>GTG	p.A249V	STX4_uc002eak.2_Missense_Mutation_p.A247V|STX4_uc002eam.2_Missense_Mutation_p.A171V|uc002ean.1_5'Flank	NM_004604	NP_004595	Q12846	STX4_HUMAN	syntaxin 4	249	Cytoplasmic (Potential).|Interaction with CENPF (By similarity).|t-SNARE coiled-coil homology.				intracellular protein transport|platelet activation|post-Golgi vesicle-mediated transport	basolateral plasma membrane|cell surface|cytosol|integral to membrane|plasma membrane enriched fraction|specific granule|vacuole	SNAP receptor activity				0						CTGAGCTCAGCGGACTACGTG	0.622000													4	130					0	0	0.000602	0	0
ZNF646	9726	broad.mit.edu	37	16	31089679	31089679	+	Silent	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr16:31089679T>C	uc002eap.2	+	2	2323	c.2034T>C	c.(2032-2034)GCT>GCC	p.A678A		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	678					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						GGAAGCGGGCTGGCGGTGCCA	0.647000													27	48					0	0	0.007291	0	0
Unknown	0	broad.mit.edu	37	16	70253871	70253871	+	RNA	SNP	A	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr16:70253871A>G	uc002eyl.1	-	5		c.1620T>C								Homo sapiens cDNA FLJ46379 fis, clone THYMU2003803, moderately similar to Homo sapiens PI-3-kinase-related kinase SMG-1 (SMG1).																		GTAAAGCTTCACCGAAGAGTG	0.388000													2	12					0	0	0.004672	0	0
RNF166	115992	broad.mit.edu	37	16	88765421	88765421	+	Silent	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr16:88765421C>A	uc002flk.2	-	4	572	c.498G>T	c.(496-498)GTG>GTT	p.V166V	RNF166_uc002fll.2_Silent_p.V57V	NM_178841	NP_849163	Q96A37	RN166_HUMAN	ring finger protein 166	166						intracellular	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0476)		CACAGTGCTTCACCAGCTCCT	0.677000													6	4					2.0095e-06	2.35999e-06	0.001984	1	0
MED1	5469	broad.mit.edu	37	17	37579984	37579984	+	Silent	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr17:37579984A>T	uc002hrv.3	-	12	1154	c.942T>A	c.(940-942)TCT>TCA	p.S314S	MED1_uc010wee.1_Silent_p.S142S|MED1_uc002hru.2_Silent_p.S314S	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	314	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		CAAATGCTCTAGATACTGGGA	0.413000										HNSCC(31;0.082)			34	54					0	0	0.013114	0	0
UNC13D	201294	broad.mit.edu	37	17	73837041	73837041	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr17:73837041A>T	uc002jpp.2	-	7	991	c.611T>A	c.(610-612)ATG>AAG	p.M204K	UNC13D_uc010wsk.1_Missense_Mutation_p.M204K|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_Missense_Mutation_p.M1K	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	204	C2 1.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			CACTCACCACATGTCCAGATG	0.592000									Familial_Hemophagocytic_Lymphohistiocytosis				114	258					0	0	0.014410	0	0
QRICH2	84074	broad.mit.edu	37	17	74288035	74288035	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr17:74288035G>A	uc002jrd.1	-	4	2455	c.2275C>T	c.(2275-2277)CAG>TAG	p.Q759*	QRICH2_uc010wsz.1_Nonsense_Mutation_p.Q685*|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	759	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GGATCTGCCTGAGGTTGCACC	0.398000													62	116					0	0	0.014410	0	0
TAF4B	6875	broad.mit.edu	37	18	23865865	23865865	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr18:23865865G>A	uc002kvu.3	+	7	1481	c.992G>A	c.(991-993)CGA>CAA	p.R331Q	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.R331Q	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	331	TAFH.				transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			GTTGCCTTACGACAACTTCTG	0.408000													87	77					0	0	0.014410	0	0
LPPR3	79948	broad.mit.edu	37	19	814747	814747	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:814747T>C	uc002lpx.1	-	6	666	c.602A>G	c.(601-603)AAG>AGG	p.K201R	LPPR3_uc010dru.1_Missense_Mutation_p.K113R|LPPR3_uc002lpw.1_Missense_Mutation_p.K201R|LPPR3_uc002lpy.1_5'UTR	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	201						integral to membrane	phosphatidate phosphatase activity				0						CGGGAAGGTCTTCCTGTAAGA	0.667000													11	19					0	0	0.008291	0	0
ABCA7	10347	broad.mit.edu	37	19	1062275	1062275	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:1062275C>T	uc002lqw.3	+	42	5906	c.5675C>T	c.(5674-5676)GCG>GTG	p.A1892V	ABCA7_uc002lqy.2_Missense_Mutation_p.A345V|ABCA7_uc010dsc.2_RNA	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1892	ABC transporter 2.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCTGCTTGCGCGCCTGCGC	0.692000													4	247					0	0	0.000602	0	0
ZNF607	84775	broad.mit.edu	37	19	38190209	38190209	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:38190209G>T	uc002ohc.1	-	5	1419	c.823C>A	c.(823-825)CAT>AAT	p.H275N	ZNF607_uc002ohb.1_Missense_Mutation_p.H274N	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	275	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TCTCCAGTATGAATACTCTGA	0.423000													43	63					2.24893e-16	2.83928e-16	0.009718	1	0
SIPA1L3	23094	broad.mit.edu	37	19	38621370	38621370	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:38621370A>C	uc002ohk.2	+	10	3610	c.3101A>C	c.(3100-3102)AAG>ACG	p.K1034T		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1034	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GTCACTGTGAAGGTGGTCATC	0.627000													25	58					0	0	0.003330	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540344	40540344	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:40540344G>A	uc002omu.2	-	5	2487	c.2422C>T	c.(2422-2424)CCT>TCT	p.P808S	ZNF780B_uc002omv.2_Missense_Mutation_p.P660S	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	808					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					ACATTCAAAGGGTTTCTCACC	0.393000													31	52					0	0	0.003271	0	0
CLPTM1	1209	broad.mit.edu	37	19	45495628	45495628	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:45495628G>A	uc002pai.2	+	13	1708	c.1693G>A	c.(1693-1695)GTT>ATT	p.V565I	CLPTM1_uc010xxf.1_Missense_Mutation_p.V463I|CLPTM1_uc010xxg.1_Missense_Mutation_p.V551I	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	565	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CAAGATGCCCGTTATGTACCG	0.627000													77	117					0	0	0.014410	0	0
NLRP2	55655	broad.mit.edu	37	19	55493701	55493701	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr19:55493701A>T	uc002qij.2	+	6	721	c.635A>T	c.(634-636)TAT>TTT	p.Y212F	NLRP2_uc010yfp.1_Missense_Mutation_p.Y189F|NLRP2_uc010esn.2_Missense_Mutation_p.Y188F|NLRP2_uc010eso.2_Missense_Mutation_p.Y209F|NLRP2_uc010esp.2_Missense_Mutation_p.Y190F	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	212	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GTGGTGCTGTATGGTCCTGCA	0.527000													48	73					0	0	0.013114	0	0
GPR113	165082	broad.mit.edu	37	2	26534291	26534291	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:26534291C>A	uc002rhe.3	-	11	2305	c.2305G>T	c.(2305-2307)GCT>TCT	p.A769S	GPR113_uc010yky.1_Missense_Mutation_p.A700S|GPR113_uc002rhb.1_Missense_Mutation_p.A372S|GPR113_uc010eyk.1_Missense_Mutation_p.A570S|GPR113_uc002rhc.1_Missense_Mutation_p.A372S|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	769	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCGCCAGAGCGGGTTCTTCC	0.627000													6	93					0.00307968	0.00330902	0.003080	1	0
HEATR5B	54497	broad.mit.edu	37	2	37267620	37267620	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:37267620A>T	uc002rpp.1	-	20	2994	c.2898T>A	c.(2896-2898)AGT>AGA	p.S966R		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	966							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ACATCGGACCACTAGAATCCA	0.373000													33	72					0	0	0.013726	0	0
UGGT1	56886	broad.mit.edu	37	2	128918714	128918714	+	Silent	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:128918714C>A	uc002tps.2	+	25	2875	c.2697C>A	c.(2695-2697)ATC>ATA	p.I899I	UGGT1_uc010fme.1_Silent_p.I774I|UGGT1_uc002tpr.2_Silent_p.I875I	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	899					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						CTTCACAGATCATTGGGCCAC	0.478000													37	81					2.51541e-25	3.29943e-25	0.004878	1	0
MGAT5	4249	broad.mit.edu	37	2	135206357	135206357	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:135206357G>A	uc002ttv.1	+	16	2310	c.2165G>A	c.(2164-2166)AGG>AAG	p.R722K	LOC151162_uc002ttw.3_5'Flank	NM_002410	NP_002401	Q09328	MGT5A_HUMAN	N-acetylglucosaminyltransferase V	722	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0964)		AGGCACCAGAGGGTCTGCCCC	0.597000													33	66					0	0	0.012213	0	0
FMNL2	114793	broad.mit.edu	37	2	153471511	153471511	+	Silent	SNP	T	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:153471511T>A	uc002tye.2	+	12	1576	c.1209T>A	c.(1207-1209)TCT>TCA	p.S403S		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	403	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AAAACATTTCTCATGTAACTA	0.378000													28	56					0	0	0.009535	0	0
GPD2	2820	broad.mit.edu	37	2	157367411	157367411	+	Silent	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:157367411C>T	uc002tzf.3	+	4	738	c.378C>T	c.(376-378)ATC>ATT	p.I126I	GPD2_uc010zch.1_Intron|GPD2_uc002tzd.3_Silent_p.I126I|GPD2_uc002tze.1_RNA	NM_001083112	NP_001076581	P43304	GPDM_HUMAN	glycerol-3-phosphate dehydrogenase 2,	126					cellular lipid metabolic process	glycerol-3-phosphate dehydrogenase complex|mitochondrial inner membrane	calcium ion binding|sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity			ovary(1)	1						AGAAGGCCATCATGAAGTTGG	0.378000													62	159					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179575504	179575504	+	Silent	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:179575504G>A	uc010zfg.1	-	95	24812	c.24588C>T	c.(24586-24588)GGC>GGT	p.G8196G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.G4857G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9123							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTACTTTCCGCCACTTCGTA	0.488000													50	109					0	0	0.014410	0	0
CTLA4	1493	broad.mit.edu	37	2	204735458	204735458	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:204735458G>A	uc002vak.1	+	2	416	c.259G>A	c.(259-261)GCA>ACA	p.A87T	CTLA4_uc002val.1_Missense_Mutation_p.A87T|CTLA4_uc010fty.1_Intron|CTLA4_uc010ftz.1_Intron	NM_005214	NP_005205	P16410	CTLA4_HUMAN	cytotoxic T-lymphocyte-associated protein 4	87	Ig-like V-type.|Extracellular (Potential).				B cell receptor signaling pathway|immune response|negative regulation of B cell proliferation|negative regulation of regulatory T cell differentiation|positive regulation of apoptosis|response to DNA damage stimulus|T cell costimulation	clathrin-coated endocytic vesicle|external side of plasma membrane|Golgi apparatus|integral to plasma membrane|perinuclear region of cytoplasm					0					Abatacept(DB01281)	AGTCTGTGCGGCAACCTACAT	0.542000													4	107					0	0	0.009096	0	0
ACADL	33	broad.mit.edu	37	2	211081192	211081192	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:211081192C>T	uc002vdz.3	-	4	643	c.415G>A	c.(415-417)GGT>AGT	p.G139S		NM_001608	NP_001599	P28330	ACADL_HUMAN	long-chain acyl-CoA dehydrogenase precursor	139					carnitine catabolic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|negative regulation of fatty acid biosynthetic process|negative regulation of fatty acid oxidation|regulation of cholesterol metabolic process|temperature homeostasis	mitochondrial matrix	long-chain-acyl-CoA dehydrogenase activity|palmitoyl-CoA oxidase activity				0		Renal(323;0.202)		Epithelial(149;0.00631)|Lung(261;0.0438)|LUSC - Lung squamous cell carcinoma(261;0.0466)|all cancers(144;0.0621)		ATGACAATACCTGAATGAATA	0.338000													41	60					0	0	0.007835	0	0
DGKD	8527	broad.mit.edu	37	2	234363455	234363455	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:234363455G>T	uc002vui.1	+	19	2323	c.2311G>T	c.(2311-2313)GGC>TGC	p.G771C	DGKD_uc002vuj.1_Missense_Mutation_p.G727C|DGKD_uc010fyh.1_Missense_Mutation_p.G638C|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	771					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TTTTGGCATTGGCCTGGATGC	0.453000													29	82					1.61788e-16	2.06843e-16	0.012213	1	0
UGT1A7	54577	broad.mit.edu	37	2	234590864	234590864	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:234590864C>T	uc002vut.2	+	1	281	c.281C>T	c.(280-282)GCC>GTC	p.A94V	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.A94V	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	94					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		ATGGTTTTTGCCGATGCTCGC	0.438000													4	248					0	0	0.000602	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	Missense_Mutation	SNP	G	C	C	rs145412486	by1000genomes	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr20:29628236G>C	uc010ztl.1	+	3	180	c.148G>C	c.(148-150)GCT>CCT	p.A50P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A2P					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGGAAAATGGCTTTGTTGGC	0.333000													4	143					0	0	0.000602	0	0
C21orf99	149992	broad.mit.edu	37	21	14439185	14439185	+	RNA	SNP	C	A	A	rs112098339		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr21:14439185C>A	uc002yja.3	+	10		c.2703C>A				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TGACTTTAAACCAAGAAGAAG	0.269000													12	35					6.40141e-05	7.26452e-05	0.010729	1	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													10	35					0	0	0.006214	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	25					0	0	0.004672	0	0
RPL3	6122	broad.mit.edu	37	22	39714484	39714484	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr22:39714484C>A	uc003axi.2	-	2	185	c.117G>T	c.(115-117)AAG>AAT	p.K39N	RPL3_uc003axh.2_Missense_Mutation_p.K39N|RPL3_uc003axj.2_5'UTR|RPL3_uc011aoj.1_Missense_Mutation_p.K39N|RPL3_uc010gxx.2_5'UTR|RPL3_uc003axg.2_5'UTR|RPL3_uc003axk.1_5'UTR	NM_000967	NP_000958	P39023	RL3_HUMAN	ribosomal protein L3 isoform a	39					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome			breast(1)|kidney(1)	2	Melanoma(58;0.04)					GGTGGACCGGCTTGGACGGGT	0.592000													12	35					0.00010058	0.000111633	0.013537	1	0
SATB1	6304	broad.mit.edu	37	3	18391172	18391172	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:18391172T>A	uc003cbh.2	-	11	3517	c.1782A>T	c.(1780-1782)CAA>CAT	p.Q594H	SATB1_uc003cbi.2_Missense_Mutation_p.Q626H|SATB1_uc003cbj.2_Missense_Mutation_p.Q594H	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	594	Poly-Gln.				cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						gctgctgctgttgctgcAAAG	0.443000													5	8					0	0	0.000602	0	0
CCDC13	152206	broad.mit.edu	37	3	42793447	42793447	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:42793447T>G	uc003cly.3	-	5	668	c.584A>C	c.(583-585)CAG>CCG	p.Q195P	CCDC13_uc003clz.2_Missense_Mutation_p.Q195P|CCDC13_uc011azq.1_Missense_Mutation_p.Q195P	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	195	Potential.									ovary(1)	1						GTCTCCCATCTGGGCCCTCGG	0.592000													26	47					0	0	0.007291	0	0
STAB1	23166	broad.mit.edu	37	3	52544437	52544437	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:52544437G>A	uc003dej.2	+	25	2775	c.2701G>A	c.(2701-2703)GTC>ATC	p.V901I		NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	901	Extracellular (Potential).|EGF-like 7.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GGATGGCCGCGTCTGTGTGGC	0.612000													29	24					0	0	0.010818	0	0
EPHB1	2047	broad.mit.edu	37	3	134670526	134670526	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:134670526T>A	uc003eqt.2	+	3	657	c.437T>A	c.(436-438)TTC>TAC	p.F146Y	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.F146Y	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	146	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GATGAGAGCTTCTCCCAGGTG	0.493000													99	96					0	0	0.014410	0	0
MED12L	116931	broad.mit.edu	37	3	151078359	151078359	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:151078359A>G	uc003eyp.2	+	19	2856	c.2818A>G	c.(2818-2820)AGC>GGC	p.S940G	MED12L_uc011bnz.1_Missense_Mutation_p.S800G|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.S104G	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	940					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGTGTCATGTAGCCACCTCAG	0.438000													101	94					0	0	0.014410	0	0
SDHAP1	255812	broad.mit.edu	37	3	195701304	195701304	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:195701304C>T	uc011btq.1	-	8	1189	c.560G>A	c.(559-561)GGC>GAC	p.G187D	SDHAP1_uc003fvx.3_RNA|SDHAP1_uc011btp.1_RNA					SubName: Full=cDNA FLJ56858, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						AGGGCACATGCCTGACCAGAC	0.572000													10	21					0	0	0.003163	0	0
NAF1	92345	broad.mit.edu	37	4	164050121	164050121	+	Silent	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr4:164050121G>A	uc003iqj.2	-	8	1607	c.1413C>T	c.(1411-1413)CCC>CCT	p.P471P	NAF1_uc010iqw.1_Intron	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	471	Pro-rich.				rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				gagggggagggggtgggggta	0.254000													13	5					0	0	0.002450	0	0
TERT	7015	broad.mit.edu	37	5	1255515	1255515	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr5:1255515C>A	uc003jcb.1	-	14	3102	c.3044G>T	c.(3043-3045)TGT>TTT	p.C1015F	TERT_uc003jbz.1_Missense_Mutation_p.C211F|TERT_uc003jca.1_Missense_Mutation_p.C1003F|TERT_uc003jcc.1_Missense_Mutation_p.C952F|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1015	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTGCAGCACACATGCGTGAAA	0.443000									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				11	29					5.50884e-06	6.32264e-06	0.013537	1	0
CCNI2	645121	broad.mit.edu	37	5	132084160	132084160	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr5:132084160C>A	uc003kxq.1	+	2	602	c.551C>A	c.(550-552)TCA>TAA	p.S184*	CCNI2_uc011cxg.1_Nonsense_Mutation_p.S184*|CCNI2_uc011cxh.1_Nonsense_Mutation_p.S185*	NM_001039780	NP_001034869	Q6ZMN8	CCNI2_HUMAN	cyclin I family, member 2	184					regulation of cyclin-dependent protein kinase activity		protein kinase binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CTCCTGATTTCAGTGAAGGTA	0.542000													35	96					2.52637e-11	3.11175e-11	0.005524	1	0
PCDHB16	57717	broad.mit.edu	37	5	140563807	140563807	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr5:140563807C>A	uc003liv.2	+	1	2828	c.1673C>A	c.(1672-1674)TCG>TAG	p.S558*		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	558	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AACGACAACTCGCCCTTCGTG	0.711000													28	20					2.36697e-06	2.74787e-06	0.007291	1	0
SLC25A2	83884	broad.mit.edu	37	5	140683316	140683316	+	Silent	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr5:140683316C>T	uc003ljf.2	-	1	297	c.117G>A	c.(115-117)ACG>ACA	p.T39T		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	39	Solcar 1.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity	p.T39M(1)		ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	GGTCAGGGAACGTCTGCATCT	0.612000													29	60					0	0	0.008361	0	0
OR5V1	81696	broad.mit.edu	37	6	29323498	29323498	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr6:29323498G>C	uc011dlo.1	-	1	557	c.475C>G	c.(475-477)CAT>GAT	p.H159D		NM_030876	NP_110503	Q9UGF6	OR5V1_HUMAN	olfactory receptor, family 5, subfamily V,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|kidney(1)	4						AACACTGTATGCACCACTGAG	0.438000													32	25					0	0	0.010818	0	0
RIMS1	22999	broad.mit.edu	37	6	73108662	73108662	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr6:73108662T>G	uc003pga.2	+	33	4803	c.4726T>G	c.(4726-4728)TAT>GAT	p.Y1576D	RIMS1_uc011dyb.1_Missense_Mutation_p.Y973D|RIMS1_uc003pgc.2_Missense_Mutation_p.Y991D|RIMS1_uc010kaq.2_Missense_Mutation_p.Y896D|RIMS1_uc011dyc.1_Missense_Mutation_p.Y701D|RIMS1_uc010kar.2_Missense_Mutation_p.Y644D|RIMS1_uc011dyd.1_Missense_Mutation_p.Y710D|RIMS1_uc003pgf.2_Missense_Mutation_p.Y576D|RIMS1_uc003pgg.2_Missense_Mutation_p.Y472D|RIMS1_uc003pgi.2_Missense_Mutation_p.Y392D|RIMS1_uc003pgh.2_Missense_Mutation_p.Y443D|RIMS1_uc003pgd.2_Missense_Mutation_p.Y642D|RIMS1_uc003pge.2_Missense_Mutation_p.Y616D|RIMS1_uc011dye.1_Missense_Mutation_p.Y382D|RIMS1_uc011dyf.1_Missense_Mutation_p.Y200D|RIMS1_uc011dyg.1_Missense_Mutation_p.Y103D	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1576	C2 2.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TTTAGCTCCATATGTCAAAGT	0.318000													14	21					0	0	0.002450	0	0
ANLN	54443	broad.mit.edu	37	7	36445953	36445953	+	Silent	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:36445953T>C	uc003tff.2	+	4	855	c.651T>C	c.(649-651)AAT>AAC	p.N217N	ANLN_uc011kaz.1_Silent_p.N129N|ANLN_uc003tfg.2_Silent_p.N217N|ANLN_uc010kxe.2_Silent_p.N217N	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	217	Nuclear localization.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						ATGATGTAAATCACTCATTTG	0.468000													41	87					0	0	0.009718	0	0
MUC17	140453	broad.mit.edu	37	7	100681165	100681165	+	Silent	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:100681165T>C	uc003uxp.1	+	3	6521	c.6468T>C	c.(6466-6468)TAT>TAC	p.Y2156Y	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2156	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|34.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCTCAACTTATAGTGACAGAA	0.463000													86	224					0	0	0.014410	0	0
MLL5	55904	broad.mit.edu	37	7	104753240	104753240	+	Silent	SNP	A	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:104753240A>C	uc003vcm.2	+	27	5571	c.5037A>C	c.(5035-5037)CCA>CCC	p.P1679P	MLL5_uc010ljc.2_Silent_p.P1679P|MLL5_uc010ljf.1_Intron|MLL5_uc010ljg.2_Silent_p.P413P	NM_182931	NP_891847	Q8IZD2	MLL5_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 5	1679	Pro-rich.				cell cycle arrest|cellular response to retinoic acid|DNA methylation|erythrocyte differentiation|neutrophil activation|neutrophil mediated immunity|positive regulation of granulocyte differentiation|positive regulation of transcription, DNA-dependent|retinoic acid receptor signaling pathway|transcription, DNA-dependent	MLL5-L complex|nuclear speck	enzyme binding|histone methyltransferase activity (H3-K4 specific)|transcription coactivator activity|zinc ion binding			ovary(2)|pancreas(1)	3						ACTTACCCCCACCCCCACCCC	0.552000													4	15					0	0	0.003080	0	0
MET	4233	broad.mit.edu	37	7	116340025	116340025	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:116340025T>C	uc003vij.2	+	2	1074	c.887T>C	c.(886-888)CTG>CCG	p.L296P	MET_uc010lkh.2_Missense_Mutation_p.L296P|MET_uc011knc.1_Missense_Mutation_p.L296P|MET_uc011knd.1_Missense_Mutation_p.L296P|MET_uc011kne.1_Missense_Mutation_p.L296P|MET_uc011knf.1_Missense_Mutation_p.L296P|MET_uc011kng.1_Missense_Mutation_p.L296P|MET_uc011knh.1_Missense_Mutation_p.L296P|MET_uc011kni.1_Missense_Mutation_p.L296P|MET_uc003vii.1_Missense_Mutation_p.L315P|MET_uc010lkg.2_Missense_Mutation_p.L296P|MET_uc011kmz.1_Missense_Mutation_p.L296P|MET_uc011kna.1_Missense_Mutation_p.L296P|MET_uc011knb.1_Missense_Mutation_p.L296P	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	296	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			GAAATGCCTCTGGAGTGTATT	0.428000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				52	127					0	0	0.014410	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651531	121651531	+	Silent	SNP	C	T	T	rs143422308		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:121651531C>T	uc003vjy.2	+	12	2826	c.2431C>T	c.(2431-2433)CTG>TTG	p.L811L	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	811	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TGAATCCATCCTGTCTTCCTA	0.458000													103	230					0	0	0.014410	0	0
GATA4	2626	broad.mit.edu	37	8	11615887	11615887	+	Missense_Mutation	SNP	C	T	T	rs55633527	byFrequency	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:11615887C>T	uc003wuc.2	+	7	1786	c.1232C>T	c.(1231-1233)GCG>GTG	p.A411V	GATA4_uc003wub.1_Missense_Mutation_p.A205V|GATA4_uc011kxc.1_Missense_Mutation_p.A412V|uc003wud.1_5'Flank	NM_002052	NP_002043	P43694	GATA4_HUMAN	GATA binding protein 4	411					atrial septum primum morphogenesis|atrial septum secundum morphogenesis|blood coagulation|cardiac right ventricle morphogenesis|cell-cell signaling|embryonic foregut morphogenesis|embryonic heart tube anterior/posterior pattern formation|endocardial cushion development|endoderm development|heart looping|intestinal epithelial cell differentiation|male gonad development|positive regulation of angiogenesis|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation vascular endothelial growth factor production|response to drug|transcription from RNA polymerase II promoter|ventricular septum development	nucleoplasm	activating transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(15;0.0839)		STAD - Stomach adenocarcinoma(15;0.00225)	COAD - Colon adenocarcinoma(149;0.199)		CAAGGCTATGCGTCTCCCGTC	0.577000													4	143					0	0	0.009096	0	0
WRN	7486	broad.mit.edu	37	8	30938567	30938567	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:30938567G>A	uc003xio.3	+	9	1812	c.1024G>A	c.(1024-1026)GTT>ATT	p.V342I	WRN_uc011lbd.1_Missense_Mutation_p.V45I|WRN_uc011lbe.1_5'Flank	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	342					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTTAATTCACGTTGAAGATGA	0.353000			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				24	88					0	0	0.007291	0	0
HTRA4	203100	broad.mit.edu	37	8	38831823	38831823	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:38831823G>A	uc003xmj.2	+	1	156	c.41G>A	c.(40-42)TGC>TAC	p.C14Y		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	14					proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			CTGGGACGATGCCTCCTGCCG	0.642000													7	23					0	0	0.001984	0	0
TTC35	9694	broad.mit.edu	37	8	109489022	109489022	+	Silent	SNP	C	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:109489022C>T	uc003ymw.1	+	9	638	c.603C>T	c.(601-603)ACC>ACT	p.T201T		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	201	TPR 3.					endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			TTAAGTATACCCAAGGTGGAC	0.338000													26	54					0	0	0.003954	0	0
FAM49B	51571	broad.mit.edu	37	8	130883632	130883632	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:130883632C>A	uc003yss.2	-	7	733	c.184G>T	c.(184-186)GAA>TAA	p.E62*	FAM49B_uc003yst.2_Nonsense_Mutation_p.E62*|FAM49B_uc003ysu.2_Nonsense_Mutation_p.E62*|FAM49B_uc003ysv.2_5'UTR|FAM49B_uc003ysw.2_Nonsense_Mutation_p.E62*|FAM49B_uc003ysx.2_Nonsense_Mutation_p.E62*|FAM49B_uc003ysy.1_Nonsense_Mutation_p.E62*	NM_016623	NP_057707	Q9NUQ9	FA49B_HUMAN	hypothetical protein LOC51571	62											0	Ovarian(5;0.000567)|Esophageal squamous(12;0.00693)|Acute lymphoblastic leukemia(118;0.155)		LUAD - Lung adenocarcinoma(14;0.0989)			TCTCGTATTTCGTGGCCAGCT	0.378000													46	79					4.10826e-27	5.45966e-27	0.014410	1	0
PHF20L1	51105	broad.mit.edu	37	8	133816926	133816926	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr8:133816926G>C	uc003ytt.2	+	8	1113	c.788G>C	c.(787-789)AGG>ACG	p.R263T	PHF20L1_uc003ytr.2_Missense_Mutation_p.R237T|PHF20L1_uc010mdv.2_Missense_Mutation_p.R237T|PHF20L1_uc003yts.2_Missense_Mutation_p.R263T|PHF20L1_uc011lja.1_Missense_Mutation_p.R237T|PHF20L1_uc003ytu.1_RNA|PHF20L1_uc003ytv.2_Missense_Mutation_p.R102T	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	263							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			TCAAACAAGAGGAAAAATAAT	0.378000													41	98					0	0	0.007835	0	0
FBXO10	26267	broad.mit.edu	37	9	37537307	37537307	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr9:37537307G>T	uc004aab.2	-	3	1268	c.1219C>A	c.(1219-1221)CTG>ATG	p.L407M	FBXO10_uc004aac.2_Missense_Mutation_p.L423M|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	407						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		AGTGAGTTCAGCACTAGGCAG	0.612000													10	17					0.000442599	0.000485897	0.006214	1	0
CAMSAP1	157922	broad.mit.edu	37	9	138714243	138714243	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr9:138714243T>C	uc004cgr.3	-	11	2264	c.2264A>G	c.(2263-2265)GAG>GGG	p.E755G	CAMSAP1_uc004cgq.3_Missense_Mutation_p.E645G|CAMSAP1_uc010nbg.2_Missense_Mutation_p.E477G	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	755						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		AGGATGGGCCTCACCCATGAA	0.542000													3	89					0	0	0.004672	0	0
YY2	404281	broad.mit.edu	37	X	21875588	21875588	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chrX:21875588G>A	uc011mjp.1	+	1	986	c.986G>A	c.(985-987)CGC>CAC	p.R329H	MBTPS2_uc004dae.2_Intron|MBTPS2_uc010nfr.2_Intron|YY2_uc010nfq.2_Missense_Mutation_p.R547H|MBTPS2_uc004dab.2_Intron	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	329	Mediates transcriptional repression.|C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TTCAATTTGCGCACACACTTG	0.532000													168	72					0	0	0.014410	0	0
DAP3	7818	broad.mit.edu	37	1	155695184	155695185	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr1:155695184_155695185insA	uc001flq.2	+	5	451_452	c.282_283insA	c.(280-285)TTCAGTfs	p.F94fs	DAP3_uc001flr.2_Frame_Shift_Ins_p.F94fs|DAP3_uc001fls.2_Frame_Shift_Ins_p.F94fs|DAP3_uc010pgl.1_Frame_Shift_Ins_p.F53fs|DAP3_uc001flt.2_Frame_Shift_Ins_p.F60fs|DAP3_uc001flu.2_Frame_Shift_Ins_p.F94fs|DAP3_uc010pgm.1_Frame_Shift_Ins_p.F60fs	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	94_95					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					TGAAGACATTCAGTGAAGCTTG	0.450													63	114	---	---	---	---					
RBM17	84991	broad.mit.edu	37	10	6157412	6157414	+	Splice_Site	DEL	TCA	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr10:6157412_6157414delTCA	uc001ijb.2	+	12	1329	c.1103_splice	c.e12-2	p.A368_splice	RBM17_uc010qav.1_Splice_Site_p.A368_splice|RBM17_uc001ijc.2_Splice_Site	NM_032905	NP_116294	Q96I25	SPF45_HUMAN	RNA binding motif protein 17						mRNA processing|RNA splicing	spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						TGTTTGCCTTTCAGCGGTTGTTG	0.355													123	145	---	---	---	---					
R3HDM2	22864	broad.mit.edu	37	12	57674205	57674207	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr12:57674205_57674207delTGC	uc009zpm.1	-	12	1271_1273	c.1236_1238delGCA	c.(1234-1239)CAGCAA>CAA	p.412_413QQ>Q	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_In_Frame_Del_p.73_74QQ>Q|R3HDM2_uc001snr.2_In_Frame_Del_p.139_140QQ>Q|R3HDM2_uc001sns.2_In_Frame_Del_p.412_413QQ>Q|R3HDM2_uc001snt.2_In_Frame_Del_p.426_427QQ>Q|R3HDM2_uc009zpn.1_In_Frame_Del_p.35_36QQ>Q	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	412_413	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						AGCAGGAAGTtgctgctgctgct	0.488													7	112	---	---	---	---					
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr14:23845057_23845058delTG	uc001wjr.2	+	2	812_813	c.502_503delTG	c.(502-504)TGTfs	p.C168fs	IL25_uc001wjq.2_Frame_Shift_Del_p.C152fs|CMTM5_uc001wjs.2_5'Flank|CMTM5_uc001wjt.2_5'Flank|CMTM5_uc010akm.2_5'Flank|CMTM5_uc010akn.2_5'Flank|CMTM5_uc001wju.2_5'Flank|CMTM5_uc010ako.2_5'Flank	NM_022789	NP_073626	Q9H293	IL25_HUMAN	interleukin 25 isoform 1 precursor	168					inflammatory response	extracellular space|membrane	cytokine activity|interleukin-17E receptor binding			ovary(1)	1	all_cancers(95;2e-05)			GBM - Glioblastoma multiforme(265;0.00665)|READ - Rectum adenocarcinoma(4;0.0276)|Colorectal(4;0.0396)		TTCCTTAGCTTGTGTGTGTGTG	0.604													7	197	---	---	---	---					
RTL1	388015	broad.mit.edu	37	14	101348358	101348358	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr14:101348358delT	uc010txj.1	-	1	2827	c.2768delA	c.(2767-2769)AAGfs	p.K923fs	uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	923										pancreas(1)	1						TGGAAGAATCTTCATCTCCGC	0.537													17	36	---	---	---	---					
WNT6	7475	broad.mit.edu	37	2	219724790	219724792	+	In_Frame_Del	DEL	GCT	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr2:219724790_219724792delGCT	uc002vjc.1	+	1	245_247	c.30_32delGCT	c.(28-33)GGGCTG>GGG	p.L17del		NM_006522	NP_006513	Q9Y6F9	WNT6_HUMAN	wingless-type MMTV integration site family,	17					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|cornea development in camera-type eye|neuron differentiation|odontogenesis of dentine-containing tooth|positive regulation of gene expression|positive regulation of tooth mineralization|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			ovary(2)|skin(1)	3		Renal(207;0.0474)		Epithelial(149;4.53e-07)|all cancers(144;9.3e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCCGCCTCGGGCTGCTGCTGCTG	0.773													3	6	---	---	---	---					
EFCAB6	64800	broad.mit.edu	37	22	44107398	44107399	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr22:44107398_44107399insA	uc003bdy.1	-	10	1202_1203	c.987_988insT	c.(985-990)TTTGTAfs	p.F329fs	EFCAB6_uc003bdz.1_Frame_Shift_Ins_p.F177fs|EFCAB6_uc010gzi.1_Frame_Shift_Ins_p.F177fs|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Frame_Shift_Ins_p.F223fs|EFCAB6_uc003bea.1_Frame_Shift_Ins_p.F326fs	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	329_330	EF-hand 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATTTGGTATACAAAAGTGTCGA	0.381													25	62	---	---	---	---					
CCDC13	152206	broad.mit.edu	37	3	42793437	42793438	+	Frame_Shift_Ins	INS	-	TC	TC			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr3:42793437_42793438insTC	uc003cly.3	-	5	677_678	c.593_594insGA	c.(592-594)GACfs	p.D198fs	CCDC13_uc003clz.2_Frame_Shift_Ins_p.D198fs|CCDC13_uc011azq.1_Frame_Shift_Ins_p.D198fs	NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	198	Potential.									ovary(1)	1						CCAATGCTCTGTCTCCCATCTG	0.609													25	62	---	---	---	---					
TMEM60	85025	broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	g.chr7:77423460delT	uc003ugn.2	-	2	458	c.231delA	c.(229-231)AAAfs	p.K77fs		NM_032936	NP_116325	Q9H2L4	TMM60_HUMAN	transmembrane protein 60	77						integral to membrane					0						GGTACCAGGCTTTTTTTTTAA	0.408													9	197	---	---	---	---					
