Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZSCAN20	7579	broad.mit.edu	37	1	33960785	33960785	+	Silent	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr1:33960785C>T	uc001bxj.3	+	8	3008	c.2841C>T	c.(2839-2841)ATC>ATT	p.I947I	ZSCAN20_uc009vui.2_Silent_p.I946I	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	947	C2H2-type 7.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CCAAGCTCATCACACACCAGA	0.527000													33	2					0	0	5.84002e-05	0	0
FAM71A	149647	broad.mit.edu	37	1	212799448	212799448	+	Missense_Mutation	SNP	G	T	T	rs149566937		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr1:212799448G>T	uc001hjk.2	+	1	1633	c.1229G>T	c.(1228-1230)AGG>ATG	p.R410M	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	410								p.R410K(1)		skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CAGCATGGAAGGGAGCGAACC	0.627000													22	7					1.37657e-19	1.19613e-17	2.27731e-05	1	0
URB2	9816	broad.mit.edu	37	1	229770859	229770859	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr1:229770859G>C	uc001hts.1	+	4	635	c.499G>C	c.(499-501)GCC>CCC	p.A167P	URB2_uc009xfd.1_Missense_Mutation_p.A167P	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	167						nucleolus				central_nervous_system(2)|ovary(1)	3						AGCTGTGGTAGCCCAGTTGTT	0.582000													18	2					0	0	9.7654e-05	0	0
URB2	9816	broad.mit.edu	37	1	229770863	229770863	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr1:229770863A>G	uc001hts.1	+	4	639	c.503A>G	c.(502-504)CAG>CGG	p.Q168R	URB2_uc009xfd.1_Missense_Mutation_p.Q168R	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	168						nucleolus				central_nervous_system(2)|ovary(1)	3						GTGGTAGCCCAGTTGTTTGAG	0.582000													18	2					0	0	0.000132079	0	0
MCM10	55388	broad.mit.edu	37	10	13222572	13222572	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr10:13222572A>C	uc001ima.2	+	7	999	c.898A>C	c.(898-900)ATA>CTA	p.I300L	MCM10_uc001imb.2_Missense_Mutation_p.I299L|MCM10_uc001imc.2_Missense_Mutation_p.I299L	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	300					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						ATTTGGGGTTATATTGAAGAA	0.423000													69	80					0	0	0.000147903	0	0
PCBD1	5092	broad.mit.edu	37	10	72643783	72643783	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr10:72643783T>C	uc001jrn.1	-	4	490	c.239A>G	c.(238-240)CAT>CGT	p.H80R		NM_000281	NP_000272	P61457	PHS_HUMAN	pterin-4 alpha-carbinolamine	80	Substrate binding (By similarity).				L-phenylalanine catabolic process|regulation of transcription, DNA-dependent|tetrahydrobiopterin biosynthetic process|transcription, DNA-dependent	cytosol|nucleus	4-alpha-hydroxytetrahydrobiopterin dehydratase activity|identical protein binding|transcription coactivator activity				0						GGCACACTCATGGGTGCTCAG	0.512000													13	27					0	0	3.45872e-05	0	0
FAS	355	broad.mit.edu	37	10	90768672	90768673	+	Missense_Mutation	DNP	CG	AT	AT	rs121913078		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr10:90768672_90768673CG>AT	uc001kfr.2	+	4	707_708	c.361_362CG>AT	c.(361-363)CGG>ATG	p.R121M	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Missense_Mutation_p.R121M|FAS_uc001kft.2_Missense_Mutation_p.R121M|FAS_uc010qnb.1_Intron|FAS_uc010qnc.1_Intron|FAS_uc001kfw.2_Intron|FAS_uc010qnd.1_Intron|FAS_uc010qne.1_Intron|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	121	Extracellular (Potential).|TNFR-Cys 2.		R -> W (in ALPS1A).		activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		AAACTGCACCCGGACCCAGAAT	0.396000									Autoimmune_Lymphoproliferative_syndrome_type_I				13	506					0	0	6.4e-05	0	0
OR4C13	283092	broad.mit.edu	37	11	49974076	49974076	+	Silent	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr11:49974076C>A	uc010rhz.1	+	1	102	c.102C>A	c.(100-102)ATC>ATA	p.I34I		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						TCATCTACATCAACGCCATGA	0.413000													32	242					2.08457e-15	1.79374e-13	4.66903e-05	1	0
NUMA1	4926	broad.mit.edu	37	11	71723991	71723991	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr11:71723991G>T	uc001orl.1	-	15	4730	c.4558C>A	c.(4558-4560)CTG>ATG	p.L1520M	NUMA1_uc009ysw.1_Missense_Mutation_p.L1083M|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.L1520M|NUMA1_uc001orn.2_Missense_Mutation_p.L1083M|NUMA1_uc009ysx.1_Missense_Mutation_p.L1520M|NUMA1_uc001oro.1_Missense_Mutation_p.L1520M	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1520	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						CTCTCCTCCAGGACCTTGACC	0.602000			T	RARA	APL								22	30					4.35082e-09	3.60386e-07	1.64113e-05	1	0
FUT4	2526	broad.mit.edu	37	11	94278321	94278321	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr11:94278321A>C	uc001pez.2	+	1	1305	c.1022A>C	c.(1021-1023)GAC>GCC	p.D341A	PIWIL4_uc010rue.1_Intron|PIWIL4_uc009ywk.1_5'Flank	NM_002033	NP_002024	P22083	FUT4_HUMAN	fucosyltransferase 4	341	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	alpha(1,3)-fucosyltransferase activity			skin(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CACCCCGGCGACCCGCCCTCA	0.662000													3	4					0	0	8.12818e-05	0	0
NFRKB	4798	broad.mit.edu	37	11	129756216	129756217	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr11:129756216_129756217CG>AT	uc001qfi.2	-	5	661_662	c.460_461CG>AT	c.(460-462)CGG>ATG	p.R154M	NFRKB_uc001qfg.2_Missense_Mutation_p.R167M|NFRKB_uc001qfh.2_Missense_Mutation_p.R177M|NFRKB_uc010sbw.1_Missense_Mutation_p.R154M	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	154					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		ACTTACACTCCGGGAAGCAAGA	0.465000													9	294					0	0	6.4e-05	0	0
HEBP1	50865	broad.mit.edu	37	12	13140120	13140120	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:13140120T>C	uc001rbd.2	-	3	537	c.364A>G	c.(364-366)ATT>GTT	p.I122V	HEBP1_uc001rbf.2_Missense_Mutation_p.I122V	NM_015987	NP_057071	Q9NRV9	HEBP1_HUMAN	heme binding protein 1	122					circadian rhythm	extracellular region				breast(1)	1		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.153)		CGTTCCTCAATCTTAACGCTT	0.483000													62	87					0	0	0.000147903	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27809595	27809595	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:27809595A>C	uc001ric.1	+	10	1213	c.836A>C	c.(835-837)GAA>GCA	p.E279A	PPFIBP1_uc010sjr.1_Missense_Mutation_p.E107A|PPFIBP1_uc001rib.1_Missense_Mutation_p.E248A|PPFIBP1_uc001ria.2_Missense_Mutation_p.E248A|PPFIBP1_uc001rid.1_Missense_Mutation_p.E126A|PPFIBP1_uc001rie.1_5'Flank	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	279	Potential.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					AAGGAATCTGAAGTAAAAAGG	0.313000													66	73					0	0	0.000147903	0	0
LRIG3	121227	broad.mit.edu	37	12	59271290	59271290	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:59271290C>A	uc001sqr.2	-	15	2674	c.2428G>T	c.(2428-2430)GTC>TTC	p.V810F	LRIG3_uc009zqh.2_Missense_Mutation_p.V750F|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	810	Helical; (Potential).					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			ATGATCACGACACCCACAGTG	0.562000													32	19					2.49991e-28	2.21567e-26	8.91981e-05	1	0
GLIPR1L2	144321	broad.mit.edu	37	12	75807385	75807386	+	Missense_Mutation	DNP	GG	TT	TT	rs149571330		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:75807385_75807386GG>TT	uc001sxr.1	+	3	496_497	c.488_489GG>TT	c.(487-489)TGG>TTT	p.W163F	GLIPR1L2_uc001sxp.1_Missense_Mutation_p.W163F|GLIPR1L2_uc001sxq.1_Missense_Mutation_p.W56F	NM_152436	NP_689649	Q4G1C9	GRPL2_HUMAN	GLI pathogenesis-related 1 like 2	163						integral to membrane				ovary(1)	1						TAGCTTGTTTGGGACCACTCTT	0.297000													9	298					0	0	6.4e-05	0	0
ANKRD13A	88455	broad.mit.edu	37	12	110457067	110457067	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:110457067T>C	uc001tpx.2	+	6	927	c.668T>C	c.(667-669)GTT>GCT	p.V223A	ANKRD13A_uc009zvl.1_RNA|ANKRD13A_uc009zvm.1_Missense_Mutation_p.V223A|ANKRD13A_uc010sxw.1_Missense_Mutation_p.V223A	NM_033121	NP_149112	Q8IZ07	AN13A_HUMAN	ankyrin repeat domain 13	223											0						AGCAGGGAAGTTGAGCGGCGG	0.438000													35	41					0	0	0.000132358	0	0
RXFP2	122042	broad.mit.edu	37	13	32376479	32376480	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr13:32376479_32376480CC>AA	uc001utt.2	+	18	2273_2274	c.2202_2203CC>AA	c.(2200-2205)TCCCTG>TCAATG	p.L735M	RXFP2_uc010aba.2_Missense_Mutation_p.L694M	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	735	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ACTCCTCTTCCCTGAAACTTGG	0.366000													11	387					0	0	6.4e-05	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33095588	33095588	+	Splice_Site	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr13:33095588T>C	uc001uuk.3	-	5	1652	c.1474_splice	c.e5-1	p.A492_splice	N4BP2L2_uc001uuj.2_Splice_Site_p.A8_splice|N4BP2L2_uc010abe.1_Splice_Site_p.A63_splice|N4BP2L2_uc010tdz.1_Splice_Site_p.A48_splice	NM_014887	NP_055702	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5												0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		TCCTATGGCCTACACAAAGGA	0.338000													3	109					0	0	2.56e-06	0	0
FREM2	341640	broad.mit.edu	37	13	39422803	39422803	+	Silent	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr13:39422803C>G	uc001uwv.2	+	8	6684	c.6375C>G	c.(6373-6375)TCC>TCG	p.S2125S	FREM2_uc001uww.2_Silent_p.S211S	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2125	Extracellular (Potential).|Calx-beta 4.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ACTCTGTCTCCGATTGTGAGT	0.358000													3	62					0	0	6.4e-05	0	0
DCT	1638	broad.mit.edu	37	13	95121078	95121079	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr13:95121078_95121079GG>TT	uc001vlv.3	-	2	943_944	c.516_517CC>AA	c.(514-519)ACCCAG>ACAAAG	p.Q173K	DCT_uc010afh.2_Missense_Mutation_p.Q173K	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	173	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		AACTGCGGCTGGGTTCCATTGG	0.480000													8	198					0	0	6.4e-05	0	0
SIX4	51804	broad.mit.edu	37	14	61190290	61190290	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr14:61190290A>C	uc001xfc.2	-	1	503	c.503T>G	c.(502-504)ATC>AGC	p.I168S	SIX4_uc010app.1_Missense_Mutation_p.I160S	NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	168						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		GCTCTCGAGGATGCTGTAGAG	0.692000													6	10					0	0	5.18039e-06	0	0
ADAM6	8755	broad.mit.edu	37	14	107276043	107276043	+	RNA	SNP	G	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr14:107276043G>A	uc010tyt.1	-	6		c.275C>T								Parts of antibodies, mostly variable regions.												0						CCTGGAGCCTGGGAAACCGAG	0.512000													5	6					0	0	1.23904e-05	0	0
C15orf53	400359	broad.mit.edu	37	15	38988925	38988925	+	Silent	SNP	G	C	C	rs146995135	byFrequency	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr15:38988925G>C	uc001zkf.1	+	1	127	c.117G>C	c.(115-117)GCG>GCC	p.A39A		NM_207444	NP_997327	Q8NAA6	CO053_HUMAN	hypothetical protein LOC400359	39											0		all_cancers(109;1.75e-13)|all_epithelial(112;1.02e-11)|Lung NSC(122;1.9e-09)|all_lung(180;4.04e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)		GBM - Glioblastoma multiforme(113;8.39e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0321)		GTCTCCAGGCGTCTGTTTGGA	0.542000													26	45					0	0	0.000147802	0	0
DTWD1	56986	broad.mit.edu	37	15	49926740	49926740	+	Missense_Mutation	SNP	T	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr15:49926740T>G	uc001zxq.2	+	5	693	c.416T>G	c.(415-417)CTC>CGC	p.L139R	DTWD1_uc001zxs.2_Missense_Mutation_p.L139R|DTWD1_uc001zxr.2_Missense_Mutation_p.L52R|DTWD1_uc001zxo.2_Missense_Mutation_p.L139R	NM_020234	NP_064619	Q8N5C7	DTWD1_HUMAN	DTW domain containing 1	139											0		all_lung(180;0.0384)		all cancers(107;3.27e-08)|GBM - Glioblastoma multiforme(94;7.6e-05)		TAGGTTGCACTCATTTTTCCT	0.299000													5	136					0	0	3.59834e-05	0	0
IREB2	3658	broad.mit.edu	37	15	78765688	78765689	+	Missense_Mutation	DNP	GT	AC	AC			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr15:78765688_78765689GT>AC	uc002bdr.2	+	8	1150_1151	c.988_989GT>AC	c.(988-990)GTT>ACT	p.V330T	IREB2_uc010unb.1_Missense_Mutation_p.V80T|IREB2_uc002bdq.2_Missense_Mutation_p.V330T	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	330							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AAACCCTTTTGTTACATCCATA	0.356000													42	49					0	0	6.4e-05	0	0
OR4F6	390648	broad.mit.edu	37	15	102346245	102346246	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr15:102346245_102346246GG>TT	uc010utr.1	+	1	323_324	c.323_324GG>TT	c.(322-324)GGG>GTT	p.G108V		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CATGCAGTTGGGGGAACTGAGA	0.480000													17	826					0	0	6.4e-05	0	0
C16orf59	80178	broad.mit.edu	37	16	2511752	2511752	+	Silent	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:2511752C>T	uc002cqh.2	+	5	641	c.610C>T	c.(610-612)CTG>TTG	p.L204L	C16orf59_uc002cqf.1_Silent_p.L204L|C16orf59_uc002cqg.1_Silent_p.L37L|C16orf59_uc002cqi.2_Silent_p.L37L|C16orf59_uc010uwb.1_Silent_p.L37L	NM_025108	NP_079384	Q7L2K0	CP059_HUMAN	hypothetical protein LOC80178	204											0		Ovarian(90;0.17)				CGACAGGCACCTGCTGCGGCT	0.607000													21	65					0	0	5.49717e-05	0	0
CYLD	1540	broad.mit.edu	37	16	50828288	50828289	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:50828288_50828289GG>TT	uc002egp.1	+	18	3050_3051	c.2635_2636GG>TT	c.(2635-2637)GGG>TTG	p.G879L	CYLD_uc010cbs.1_Missense_Mutation_p.G876L|CYLD_uc002egq.1_Missense_Mutation_p.G876L|CYLD_uc002egr.1_Missense_Mutation_p.G876L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	879					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				TGTGAAGTATGGGAAGGACGAT	0.495000			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				9	362					0	0	6.4e-05	0	0
CES3	23491	broad.mit.edu	37	16	67000741	67000741	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:67000741C>A	uc002eqt.2	+	8	1108	c.1035C>A	c.(1033-1035)AAC>AAA	p.N345K	CES3_uc010cdz.2_Missense_Mutation_p.N345K|CES3_uc010cea.2_RNA|CES3_uc010viw.1_5'Flank	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	345						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GTGTCAACAACCATGAGTTCA	0.567000													65	113					1.52378e-38	1.37809e-36	0.000147903	1	0
FAM65A	79567	broad.mit.edu	37	16	67576026	67576026	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:67576026G>A	uc010vjp.1	+	13	1493	c.1397G>A	c.(1396-1398)CGG>CAG	p.R466Q	FAM65A_uc010cei.1_Missense_Mutation_p.R288Q|FAM65A_uc002eth.2_Missense_Mutation_p.R446Q|FAM65A_uc010cej.2_Missense_Mutation_p.R449Q|FAM65A_uc002eti.1_Missense_Mutation_p.R409Q|FAM65A_uc010vjq.1_Missense_Mutation_p.R460Q|FAM65A_uc002etj.1_Missense_Mutation_p.R445Q|FAM65A_uc002etk.2_Missense_Mutation_p.R445Q	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	450						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		CCCTACAGTCGGACTCTGAGC	0.632000													27	85					0	0	3.70037e-05	0	0
MLKL	197259	broad.mit.edu	37	16	74725267	74725268	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:74725267_74725268CC>AA	uc002fdb.2	-	4	1070_1071	c.629_630GG>TT	c.(628-630)AGG>ATT	p.R210I	MLKL_uc002fdc.2_Intron	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	210	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						CTTCATTTTCCCTTAGCAGAAT	0.421000													16	510					0	0	6.4e-05	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76461433	76461434	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:76461433_76461434CC>AA	uc002feu.1	+	6	860_861	c.475_476CC>AA	c.(475-477)CCT>AAT	p.P159N	CNTNAP4_uc002fev.1_Missense_Mutation_p.P71N|CNTNAP4_uc010chb.1_Missense_Mutation_p.P134N|CNTNAP4_uc002fex.1_Missense_Mutation_p.P162N|CNTNAP4_uc002few.2_Missense_Mutation_p.P134N	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	159	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCGCTTCATCCCTTTGGAATGG	0.416000													9	220					0	0	6.4e-05	0	0
CHMP1A	5119	broad.mit.edu	37	16	89717999	89717999	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr16:89717999G>C	uc002fnu.2	-	3	216	c.83C>G	c.(82-84)GCG>GGG	p.A28G	CHMP1A_uc002fnv.2_Silent_p.G21G	NM_002768	NP_002759	Q9HD42	CHM1A_HUMAN	chromatin modifying protein 1A isoform 2	28	Potential.				cell division|gene silencing|mitotic chromosome condensation|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription by glucose|protein transport|transcription, DNA-dependent|vesicle-mediated transport	condensed nuclear chromosome|early endosome|endomembrane system|endosome membrane|microtubule organizing center|nuclear matrix	metallopeptidase activity|protein domain specific binding|zinc ion binding				0		all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.048)		GGCCTGCTCCGCCTTGGAGTC	0.572000													31	24					0	0	2.31628e-05	0	0
SLC47A2	146802	broad.mit.edu	37	17	19610045	19610045	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:19610045C>G	uc002gwe.3	-	9	1040	c.865G>C	c.(865-867)GGC>CGC	p.G289R	SLC47A2_uc002gwg.3_Missense_Mutation_p.G253R|SLC47A2_uc002gwf.3_Missense_Mutation_p.G253R|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	289	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					AAGAAGGGGCCCCAGTCCTGC	0.607000													26	25					0	0	0.000147802	0	0
RHOT1	55288	broad.mit.edu	37	17	30521041	30521042	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:30521041_30521042GG>TT	uc002hgz.2	+	11	1023_1024	c.784_785GG>TT	c.(784-786)GGG>TTG	p.G262L	RHOT1_uc002hgw.2_Missense_Mutation_p.G262L|RHOT1_uc002hgy.2_Missense_Mutation_p.G262L|RHOT1_uc002hha.2_Missense_Mutation_p.G135L|RHOT1_uc010csv.2_RNA|RHOT1_uc002hgx.2_Missense_Mutation_p.G135L|RHOT1_uc010wby.1_Missense_Mutation_p.G262L|RHOT1_uc002hhb.2_Missense_Mutation_p.G241L|RHOT1_uc002hgv.2_Missense_Mutation_p.G262L	NM_018307	NP_060777	Q8IXI2	MIRO1_HUMAN	ras homolog gene family, member T1 isoform 3	262	Mitochondrial intermembrane (Potential).				apoptosis|cellular homeostasis|mitochondrion transport along microtubule|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to mitochondrial outer membrane|plasma membrane	calcium ion binding|GTP binding|GTPase activity|protein binding			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(56;0.0255)|Breast(31;0.116)|Ovarian(249;0.182)				TATCCAGAGAGGGAGACACGAA	0.361000													11	373					0	0	6.4e-05	0	0
ZNF207	7756	broad.mit.edu	37	17	30696350	30696350	+	Missense_Mutation	SNP	A	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:30696350A>T	uc002hhh.3	+	10	1301	c.1153A>T	c.(1153-1155)AAT>TAT	p.N385Y	ZNF207_uc002hhj.3_Missense_Mutation_p.N401Y|ZNF207_uc002hhi.3_Missense_Mutation_p.N370Y|ZNF207_uc010csz.2_Missense_Mutation_p.N404Y|ZNF207_uc002hhk.1_Missense_Mutation_p.N401Y|ZNF207_uc002hhl.1_RNA	NM_003457	NP_003448	O43670	ZN207_HUMAN	zinc finger protein 207 isoform a	385						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Breast(31;0.116)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.239)			GTATCAACGTAATCTTCCTCG	0.502000													42	39					0	0	8.96297e-05	0	0
MYO19	80179	broad.mit.edu	37	17	34881145	34881146	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:34881145_34881146CC>AA	uc010wcy.1	-	7	1319_1320	c.327_328GG>TT	c.(325-330)GTGGGT>GTTTGT	p.G110C	MYO19_uc002hmw.2_Missense_Mutation_p.G110C|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Intron|MYO19_uc002hmx.2_Missense_Mutation_p.G110C	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	110	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GTCTGTTCACCCACAGTGAACA	0.470000													9	215					0	0	6.4e-05	0	0
ACACA	31	broad.mit.edu	37	17	35632857	35632858	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:35632857_35632858GG>TT	uc002hnm.2	-	8	967_968	c.776_777CC>AA	c.(775-777)CCC>CAA	p.P259Q	ACACA_uc002hnk.2_Missense_Mutation_p.P181Q|ACACA_uc002hnl.2_Missense_Mutation_p.P201Q|ACACA_uc002hnn.2_Missense_Mutation_p.P259Q|ACACA_uc002hno.2_Missense_Mutation_p.P296Q|ACACA_uc010cuz.2_Missense_Mutation_p.P259Q|ACACA_uc002hnq.2_Missense_Mutation_p.P181Q	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	259	Biotin carboxylation.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGCCGCTCCAGGGAAGAGTTGG	0.441000													8	213					0	0	6.4e-05	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288288	36288289	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:36288288_36288289CC>AA	uc002hoo.2	+	6	531_532	c.374_375CC>AA	c.(373-375)CCC>CAA	p.P125Q	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.P45Q|TBC1D3_uc010cvf.1_Missense_Mutation_p.P125Q|TBC1D3_uc002hoq.2_Missense_Mutation_p.P125Q|TBC1D3_uc010wdk.1_Missense_Mutation_p.P186Q|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	125	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		TTGAAAAACCCCGGAAGATACC	0.574000													13	625					0	0	6.4e-05	0	0
PPM1D	8493	broad.mit.edu	37	17	58740837	58740837	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:58740837G>A	uc002iyt.1	+	6	1964	c.1742G>A	c.(1741-1743)CGA>CAA	p.R581Q	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	581					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			CTCACCATGCGACGCAGACTT	0.443000											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	44	42					0	0	0.000125731	0	0
AMZ2	51321	broad.mit.edu	37	17	66246422	66246423	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr17:66246422_66246423GG>TT	uc002jgs.1	+	3	211_212	c.94_95GG>TT	c.(94-96)GGG>TTG	p.G32L	AMZ2_uc002jgr.1_Missense_Mutation_p.G32L|AMZ2_uc002jgt.1_Missense_Mutation_p.G32L|AMZ2_uc002jgu.1_Missense_Mutation_p.G32L|AMZ2_uc002jgv.1_Missense_Mutation_p.G32L|AMZ2_uc002jgw.1_Missense_Mutation_p.G32L|AMZ2_uc002jgx.1_Missense_Mutation_p.G32L|AMZ2_uc002jgy.1_Missense_Mutation_p.G32L	NM_001033572	NP_001028744	Q86W34	AMZ2_HUMAN	archaemetzincins-2 isoform 1	32							metallopeptidase activity|zinc ion binding				0	all_cancers(12;1.12e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)			ATTAAATGCTGGGGAACAACGT	0.441000													10	158					0	0	6.4e-05	0	0
SMAD7	4092	broad.mit.edu	37	18	46447887	46447887	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr18:46447887C>T	uc002ldg.2	-	4	1423	c.1136G>A	c.(1135-1137)CGG>CAG	p.R379Q	SMAD7_uc002ldf.2_Missense_Mutation_p.R191Q|SMAD7_uc010xde.1_Missense_Mutation_p.R164Q	NM_005904	NP_005895	O15105	SMAD7_HUMAN	SMAD family member 7	379	MH2.				adherens junction assembly|artery morphogenesis|BMP signaling pathway|cellular protein complex localization|negative regulation of BMP signaling pathway|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of peptidyl-serine phosphorylation|negative regulation of peptidyl-threonine phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription by competitive promoter binding|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of ubiquitin-protein ligase activity|pathway-restricted SMAD protein phosphorylation|positive regulation of anti-apoptosis|positive regulation of cell-cell adhesion|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein stabilization|regulation of activin receptor signaling pathway|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	centrosome|cytosol|nucleolus|plasma membrane|transcription factor complex	activin binding|beta-catenin binding|I-SMAD binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding				0	Colorectal(1;0.0518)					GTCATTGGGCCGCTGCAGGCT	0.582000													19	32					0	0	1.64113e-05	0	0
GATAD2A	54815	broad.mit.edu	37	19	19613195	19613195	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr19:19613195C>T	uc010xqt.1	+	11	1943	c.1631C>T	c.(1630-1632)ACG>ATG	p.T544M	GATAD2A_uc010xqu.1_Missense_Mutation_p.T173M|GATAD2A_uc010xqv.1_Missense_Mutation_p.T564M|GATAD2A_uc010xqw.1_Missense_Mutation_p.T347M	NM_017660	NP_060130	Q86YP4	P66A_HUMAN	GATA zinc finger domain containing 2A	544					DNA methylation|negative regulation of transcription, DNA-dependent	nuclear speck|NuRD complex	protein binding, bridging|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTCCTGCACACGTTCAGTCCG	0.647000													31	47					0	0	3.70037e-05	0	0
ZNF30	90075	broad.mit.edu	37	19	35435141	35435141	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr19:35435141G>C	uc010edp.1	+	5	1649	c.1271G>C	c.(1270-1272)GGG>GCG	p.G424A	ZNF30_uc002nxf.2_Missense_Mutation_p.G343A|ZNF30_uc010edq.1_Missense_Mutation_p.G425A|ZNF30_uc010edr.1_Missense_Mutation_p.G425A	NM_194325	NP_919306	P17039	ZNF30_HUMAN	zinc finger protein 30 isoform b	424					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_lung(56;8.38e-08)|Lung NSC(56;1.31e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)	GBM - Glioblastoma multiforme(1328;0.0265)		ATCCATACTGGGGAGAAACCC	0.468000													3	30					0	0	6.4e-05	0	0
ZNF573	126231	broad.mit.edu	37	19	38230139	38230140	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr19:38230139_38230140CC>AA	uc002ohe.2	-	4	1273_1274	c.1251_1252GG>TT	c.(1249-1254)AAGGAA>AATTAA	p.417_418KE>N*	ZNF573_uc010efs.2_Nonsense_Mutation_p.330_331KE>N*|ZNF573_uc002ohd.2_Nonsense_Mutation_p.415_416KE>N*|ZNF573_uc002ohf.2_Nonsense_Mutation_p.359_360KE>N*|ZNF573_uc002ohg.2_Nonsense_Mutation_p.329_330KE>N*	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	397_398	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			TTTCCGCATTCCTTGCATTCAT	0.376000													101	145					0	0	6.4e-05	0	0
PRR12	57479	broad.mit.edu	37	19	50097991	50097991	+	Silent	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr19:50097991G>C	uc002poo.3	+	4	399	c.399G>C	c.(397-399)TCG>TCC	p.S133S		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		TCTTCATCTCGGGTGCCCTGC	0.662000													10	13					0	0	1.49906e-05	0	0
NLRP9	338321	broad.mit.edu	37	19	56249550	56249551	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr19:56249550_56249551GG>TT	uc002qly.2	-	1	218_219	c.190_191CC>AA	c.(190-192)CCA>AAA	p.P64K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	64	DAPIN.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CTGCTTTCCTGGGTAATGTTTG	0.465000													14	520					0	0	6.4e-05	0	0
GEN1	348654	broad.mit.edu	37	2	17955658	17955658	+	Nonsense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:17955658C>T	uc002rct.2	+	11	1265	c.1192C>T	c.(1192-1194)CAG>TAG	p.Q398*	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Nonsense_Mutation_p.Q398*|GEN1_uc002rcu.2_Nonsense_Mutation_p.Q398*	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	398					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TAATCAACTACAGCCAATTCG	0.348000								Homologous_recombination					82	89					0	0	0.000147903	0	0
GPR113	165082	broad.mit.edu	37	2	26532908	26532908	+	Silent	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:26532908C>A	uc002rhe.3	-	13	3144	c.3144G>T	c.(3142-3144)GTG>GTT	p.V1048V	GPR113_uc010yky.1_Intron|GPR113_uc002rhb.1_Intron|GPR113_uc010eyk.1_Intron|GPR113_uc002rhc.1_Intron|GPR113_uc002rhd.1_Intron	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	1048	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCAGCAACTCACCAGGGAGA	0.572000													41	49					1.12205e-10	9.3818e-09	0.000147903	1	0
GFPT1	2673	broad.mit.edu	37	2	69553334	69553334	+	Missense_Mutation	SNP	A	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:69553334A>T	uc002sfh.2	-	19	2212	c.2033T>A	c.(2032-2034)GTG>GAG	p.V678E		NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	696					dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						CTCTACAGTCACAGATTTGGC	0.343000													18	28					0	0	0.000132079	0	0
VWA3B	200403	broad.mit.edu	37	2	98750302	98750303	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:98750302_98750303CG>AT	uc002syo.2	+	7	1152_1153	c.888_889CG>AT	c.(886-891)GCCGAG>GCATAG	p.E297*	VWA3B_uc010yvh.1_Nonsense_Mutation_p.E147*|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Nonsense_Mutation_p.E297*|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	297										ovary(3)|large_intestine(2)|skin(1)	6						ACGCATTTGCCGAGAGAACAGA	0.480000													9	241					0	0	6.4e-05	0	0
NCKAP5	344148	broad.mit.edu	37	2	133541732	133541732	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:133541732C>G	uc002ttp.2	-	14	3026	c.2652G>C	c.(2650-2652)TGG>TGC	p.W884C	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	884							protein binding				0						GGCACTGGACCCAGTCCCTCC	0.577000													44	27					0	0	0.000147903	0	0
TANC1	85461	broad.mit.edu	37	2	160084382	160084382	+	Missense_Mutation	SNP	T	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:160084382T>G	uc002uag.2	+	25	4230	c.3956T>G	c.(3955-3957)TTT>TGT	p.F1319C	TANC1_uc010zcm.1_Missense_Mutation_p.F1311C|TANC1_uc010fom.1_Missense_Mutation_p.F1125C|TANC1_uc010fon.2_Missense_Mutation_p.F163C	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1319	TPR 1.					cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TTAAGAAAGTTTCCTCGAGAA	0.408000													37	33					0	0	0.000132358	0	0
ITM2C	81618	broad.mit.edu	37	2	231741583	231741583	+	Silent	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:231741583G>C	uc002vqz.2	+	4	582	c.462G>C	c.(460-462)GCG>GCC	p.A154A	ITM2C_uc002vra.2_Silent_p.A107A|ITM2C_uc002vrb.2_Intron|ITM2C_uc002vrc.2_Silent_p.A43A|ITM2C_uc002vrd.2_Intron	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	154	BRICHOS.				negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		GTCTGACTGCGTACCATGATA	0.537000													46	49					0	0	8.96297e-05	0	0
DSN1	79980	broad.mit.edu	37	20	35399580	35399580	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr20:35399580C>A	uc010gfr.2	-	3	424	c.51G>T	c.(49-51)ATG>ATT	p.M17I	DSN1_uc002xfz.2_Missense_Mutation_p.M17I|DSN1_uc002xfy.3_Intron|DSN1_uc002xga.2_Missense_Mutation_p.M17I|DSN1_uc010zvs.1_Intron|DSN1_uc002xgc.2_Missense_Mutation_p.M1I|DSN1_uc002xgb.2_Missense_Mutation_p.M1I	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	17					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				GAGTCTTAGACATCACTGGTC	0.378000													86	188					7.68447e-34	6.87954e-32	0.000147903	1	0
TOP1	7150	broad.mit.edu	37	20	39750369	39750370	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr20:39750369_39750370CG>AT	uc002xjl.2	+	19	2230_2231	c.1984_1985CG>AT	c.(1984-1986)CGG>ATG	p.R662M	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	662					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	AGCAGATGCCCGGAGAGACCTG	0.460000			T	NUP98	AML*								7	391					0	0	6.4e-05	0	0
PCIF1	63935	broad.mit.edu	37	20	44574472	44574473	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr20:44574472_44574473CG>AT	uc002xqs.2	+	12	1605_1606	c.1291_1292CG>AT	c.(1291-1293)CGG>ATG	p.R431M	PCIF1_uc002xqt.2_Missense_Mutation_p.R11M|PCIF1_uc002xqu.2_5'Flank	NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	431						nucleus				skin(1)	1						GGTCTGCATCCGGTATAAGGGA	0.599000													6	159					0	0	6.4e-05	0	0
SLC9A8	23315	broad.mit.edu	37	20	48472052	48472053	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr20:48472052_48472053CC>AA	uc002xuv.1	+	8	857_858	c.647_648CC>AA	c.(646-648)CCC>CAA	p.P216Q	SLC9A8_uc010zym.1_5'UTR|SLC9A8_uc010zyj.1_Missense_Mutation_p.P232Q|SLC9A8_uc010zyk.1_Missense_Mutation_p.R205S|SLC9A8_uc010zyl.1_Missense_Mutation_p.R177S|SLC9A8_uc010gib.1_Missense_Mutation_p.R171S	NM_015266	NP_056081	Q9Y2E8	SL9A8_HUMAN	sodium/hydrogen exchanger 8	216						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			CATGTGGACCCCGTGCTCAACA	0.475000													10	183					0	0	6.4e-05	0	0
LOC96610	96610	broad.mit.edu	37	22	22661206	22661206	+	RNA	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr22:22661206T>C	uc011aim.1	+	27		c.1632T>C			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						AGCTGAATCATGCAGAATTTG	0.408000													3	22					0	0	6.4e-05	0	0
NF2	4771	broad.mit.edu	37	22	30051666	30051666	+	Splice_Site	SNP	G	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr22:30051666G>A	uc003age.3	+	6	1042	c.599_splice	c.e6+1	p.R200_splice	NF2_uc003afy.3_Splice_Site_p.R200_splice|NF2_uc003afz.3_Splice_Site_p.R117_splice|NF2_uc003agf.3_Splice_Site_p.R200_splice|NF2_uc003agb.3_Splice_Site_p.R123_splice|NF2_uc003agc.3_Splice_Site_p.R162_splice|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Splice_Site_p.R200_splice|NF2_uc003aga.3_Splice_Site_p.R158_splice|NF2_uc003agh.3_Splice_Site_p.R159_splice|NF2_uc003agi.3_Splice_Site_p.R117_splice|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Splice_Site_p.R162_splice	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1						actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.?(3)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GCCGAGCCAGGTGAGGCCCAT	0.408000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				33	5					0	0	5.84002e-05	0	0
CCR2	729230	broad.mit.edu	37	3	46399085	46399085	+	Missense_Mutation	SNP	T	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:46399085T>A	uc003cpn.3	+	2	552	c.67T>A	c.(67-69)TTT>ATT	p.F23I	CCR2_uc003cpm.3_Missense_Mutation_p.F23I	NM_001123041	NP_001116513	P41597	CCR2_HUMAN	chemokine (C-C motif) receptor 2 isoform A	23	Extracellular (Potential).				astrocyte cell migration|blood vessel remodeling|cellular defense response|chemokine-mediated signaling pathway|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response|interspecies interaction between organisms|JAK-STAT cascade|monocyte extravasation|negative regulation of adenylate cyclase activity|negative regulation of angiogenesis|negative regulation of eosinophil degranulation|negative regulation of type 2 immune response|positive regulation of alpha-beta T cell proliferation|positive regulation of immune complex clearance by monocytes and macrophages|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-2 production|positive regulation of monocyte chemotaxis|positive regulation of T cell chemotaxis|positive regulation of T cell extravasation|positive regulation of T-helper 1 type immune response|positive regulation of tumor necrosis factor biosynthetic process|regulation of vascular endothelial growth factor production|T-helper 17 cell chemotaxis	cytosol|dendrite|integral to plasma membrane|perikaryon|perinuclear region of cytoplasm|soluble fraction	C-C chemokine receptor activity|CCR2 chemokine receptor binding|protein homodimerization activity			lung(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0174)|Kidney(197;0.0206)		AGTCACCACCTTTTTTGATTA	0.478000													112	114					0	0	0.000147903	0	0
SMARCC1	6599	broad.mit.edu	37	3	47762162	47762163	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:47762162_47762163GG>TT	uc003crq.2	-	7	827_828	c.709_710CC>AA	c.(709-711)CCA>AAA	p.P237K	SMARCC1_uc011bbd.1_Missense_Mutation_p.P128K	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	237					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		TTACCTGTCTGGGTAAAAGCCC	0.366000													13	318					0	0	6.4e-05	0	0
CELSR3	1951	broad.mit.edu	37	3	48668741	48668741	+	Splice_Site	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:48668741T>C	uc003cuf.1	-	44	11119	c.11119_splice	c.e44-1	p.L3707_splice	SLC26A6_uc003cug.2_Splice_Site_p.L281_splice|SLC26A6_uc003cuh.2_Splice_Site_p.L302_splice|SLC26A6_uc010hke.2_Splice_Site_p.L153_splice|SLC26A6_uc003cuk.2_Splice_Site_p.L195_splice|SLC26A6_uc003cui.2_Splice_Site_p.L302_splice|SLC26A6_uc003cuj.2_Splice_Site_p.L302_splice|SLC26A6_uc011bbp.1_Splice_Site_p.L266_splice	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3						homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCCGATGAGCTGTGGGAGAGG	0.577000													6	3					0	0	5.18039e-06	0	0
ZMYND10	51364	broad.mit.edu	37	3	50379017	50379017	+	Nonsense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:50379017C>T	uc003dag.1	-	11	1381	c.1235G>A	c.(1234-1236)TGG>TAG	p.W412*	RASSF1_uc003dad.1_5'Flank|RASSF1_uc003dae.1_5'Flank|RASSF1_uc010hlk.1_5'Flank|RASSF1_uc003daf.1_5'Flank|RASSF1_uc011bdq.1_5'Flank|ZMYND10_uc010hll.1_Nonsense_Mutation_p.W407*	NM_015896	NP_056980	O75800	ZMY10_HUMAN	zinc finger, MYND domain-containing 10	412	MYND-type.					cytoplasm	protein binding|zinc ion binding			lung(4)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		GCAGCAATACCACTCATTCTG	0.572000										TSP Lung(30;0.18)			27	35					0	0	0.000147802	0	0
C3orf63	23272	broad.mit.edu	37	3	56658883	56658883	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:56658883G>C	uc003did.3	-	21	4209	c.4108C>G	c.(4108-4110)CAG>GAG	p.Q1370E	C3orf63_uc003dib.3_Missense_Mutation_p.Q489E|C3orf63_uc003dic.3_Missense_Mutation_p.Q994E|C3orf63_uc003die.3_Missense_Mutation_p.Q1431E	NM_015224	NP_056039	Q9UK61	CC063_HUMAN	retinoblastoma-associated protein 140 isoform b	1431										ovary(3)|kidney(1)|central_nervous_system(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.0126)|Kidney(284;0.0147)		TGTCGTTGCTGTATGTTCTGA	0.383000													47	64					0	0	0.000147903	0	0
ACOX2	8309	broad.mit.edu	37	3	58517532	58517532	+	Silent	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:58517532C>A	uc003dkl.2	-	6	766	c.591G>T	c.(589-591)CGG>CGT	p.R197R		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	197					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		GGGTGGCTGACCGTCCCACTG	0.612000													14	15					3.52763e-06	0.000289494	5.01169e-05	1	0
ZBTB11	27107	broad.mit.edu	37	3	101370105	101370105	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:101370105C>T	uc003dve.3	-	11	3297	c.3067G>A	c.(3067-3069)GTA>ATA	p.V1023I		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	1023					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTGCTAATACATAATTAACC	0.398000													66	85					0	0	0.000147903	0	0
KIAA2018	205717	broad.mit.edu	37	3	113376409	113376409	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:113376409T>C	uc003eam.2	-	7	4531	c.4120A>G	c.(4120-4122)ATG>GTG	p.M1374V	KIAA2018_uc003eal.2_Missense_Mutation_p.M1318V	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1374					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGACTGACCATCATTTGAGTT	0.468000													31	42					0	0	2.90539e-05	0	0
FSTL1	11167	broad.mit.edu	37	3	120122159	120122159	+	Silent	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:120122159A>G	uc003eds.2	-	8	799	c.624T>C	c.(622-624)AAT>AAC	p.N208N	FSTL1_uc011bjh.1_Silent_p.N173N	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	208	EF-hand 2.				BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		TCCAATCAGCATTTTCATCAG	0.438000													54	66					0	0	0.000147903	0	0
ETV5	2119	broad.mit.edu	37	3	185766603	185766603	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr3:185766603G>A	uc003fpz.2	-	13	1605	c.1358C>T	c.(1357-1359)GCC>GTC	p.A453V	ETV5_uc003fpy.2_Missense_Mutation_p.A495V	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	453					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			GGAGAAGAGGGCATCTGGGTC	0.582000			T	TMPRSS2|SCL45A3	Prostate 								19	15					0	0	3.10358e-05	0	0
MMRN1	22915	broad.mit.edu	37	4	90849064	90849065	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr4:90849064_90849065CC>AA	uc003hst.2	+	5	1145_1146	c.1074_1075CC>AA	c.(1072-1077)TCCCTA>TCAATA	p.L359I	MMRN1_uc010iku.2_Missense_Mutation_p.L325I|MMRN1_uc011cds.1_Missense_Mutation_p.L101I	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	359	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		CTTACTCCTCCCTAGAAGGAAA	0.347000													9	205					0	0	6.4e-05	0	0
FAT1	2195	broad.mit.edu	37	4	187539870	187539870	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr4:187539870C>A	uc003izf.2	-	10	8058	c.7870G>T	c.(7870-7872)GAT>TAT	p.D2624Y		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2624	Extracellular (Potential).|Cadherin 24.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GAGCCCTCATCGGCATCACTT	0.443000										HNSCC(5;0.00058)			32	39					4.4194e-11	3.7304e-09	7.24521e-05	1	0
CLPTM1L	81037	broad.mit.edu	37	5	1335258	1335258	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:1335258A>G	uc003jch.2	-	6	756	c.710T>C	c.(709-711)CTC>CCC	p.L237P	CLPTM1L_uc003jcg.2_Missense_Mutation_p.L104P	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	237	Extracellular (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GGACACGGTGAGGGGCAGCTC	0.627000													27	41					0	0	9.22233e-05	0	0
MCCC2	64087	broad.mit.edu	37	5	70939669	70939670	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:70939669_70939670CC>AA	uc003kbs.3	+	12	1234_1235	c.1096_1097CC>AA	c.(1096-1098)CCA>AAA	p.P366K	MCCC2_uc003kbt.3_RNA	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	366	Acyl-CoA binding (Potential).|Carboxyltransferase.				leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	ATTTGGGTACCCAGTAGGTATC	0.332000													9	255					0	0	6.4e-05	0	0
PAPD4	167153	broad.mit.edu	37	5	78936975	78936976	+	Missense_Mutation	DNP	CG	AT	AT	rs151126262		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:78936975_78936976CG>AT	uc010jae.1	+	7	1046_1047	c.628_629CG>AT	c.(628-630)CGG>ATG	p.R210M	PAPD4_uc003kgb.2_Missense_Mutation_p.R210M|PAPD4_uc010jaf.1_Missense_Mutation_p.R210M|PAPD4_uc003kga.2_Missense_Mutation_p.R210M|PAPD4_uc003kfz.2_Missense_Mutation_p.R210M	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	210					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		ATTTGGTACCCGGAGCAGTGAT	0.337000													12	397					0	0	6.4e-05	0	0
P4HA2	8974	broad.mit.edu	37	5	131544916	131544917	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:131544916_131544917GG>TT	uc003kwh.2	-	7	1381_1382	c.817_818CC>AA	c.(817-819)CCA>AAA	p.P273K	P4HA2_uc003kwg.2_Missense_Mutation_p.P273K|P4HA2_uc003kwi.2_Missense_Mutation_p.P273K|P4HA2_uc003kwk.2_Missense_Mutation_p.P273K|P4HA2_uc003kwl.2_Missense_Mutation_p.P273K|P4HA2_uc003kwj.2_Missense_Mutation_p.P273K	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	273						endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	GATGCCTTCTGGGGTTGCTAGC	0.515000													10	242					0	0	6.4e-05	0	0
GTF3C6	112495	broad.mit.edu	37	6	111288715	111288716	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:111288715_111288716GG>TT	uc003pum.2	+	6	574_575	c.364_365GG>TT	c.(364-366)GGG>TTG	p.G122L		NM_138408	NP_612417	Q969F1	TF3C6_HUMAN	general transcription factor IIIC, polypeptide	122						transcription factor TFIIIC complex	DNA binding|protein binding				0		all_cancers(87;0.00328)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|Colorectal(196;0.0466)|all_epithelial(87;0.0575)		OV - Ovarian serous cystadenocarcinoma(136;0.105)|all cancers(137;0.179)|Epithelial(106;0.186)		CAAATTAGGTGGGGTGGAATGG	0.312000													10	220					0	0	6.4e-05	0	0
AHI1	54806	broad.mit.edu	37	6	135787484	135787485	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:135787484_135787485GG>TT	uc003qgi.2	-	7	600_601	c.216_217CC>AA	c.(214-219)CCCCAT>CCAAAT	p.H73N	AHI1_uc003qgh.2_Missense_Mutation_p.H73N|AHI1_uc003qgj.2_Missense_Mutation_p.H73N|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Missense_Mutation_p.H73N	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	73						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		TCTTTAATATGGGGAAGATTGC	0.337000													10	345					0	0	6.4e-05	0	0
AKAP12	9590	broad.mit.edu	37	6	151626981	151626981	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:151626981C>G	uc011eep.1	+	3	502	c.262C>G	c.(262-264)CTG>GTG	p.L88V	AKAP12_uc003qoe.2_Missense_Mutation_p.L88V	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	88					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GAAAGGAGCCCTGAACGGTCA	0.552000													12	18					0	0	6.40141e-05	0	0
ARID1B	57492	broad.mit.edu	37	6	157525063	157525064	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:157525063_157525064GG>TT	uc003qqn.2	+	19	5056_5057	c.4904_4905GG>TT	c.(4903-4905)TGG>TTT	p.W1635F	ARID1B_uc003qqo.2_Missense_Mutation_p.W1595F|ARID1B_uc003qqp.2_Missense_Mutation_p.W1582F	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1640					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		GAGAGTACGTGGGCTTTGGACA	0.431000													15	533					0	0	6.4e-05	0	0
MLLT4	4301	broad.mit.edu	37	6	168281195	168281196	+	Missense_Mutation	DNP	CG	AT	AT	rs143227309		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:168281195_168281196CG>AT	uc003qwd.2	+	6	1034_1035	c.892_893CG>AT	c.(892-894)CGG>ATG	p.R298M	MLLT4_uc003qwb.1_Missense_Mutation_p.R298M|MLLT4_uc003qwc.1_Missense_Mutation_p.R299M|MLLT4_uc003qwf.2_Translation_Start_Site	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	299	Ras-associating 2.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CTGCATCGCCCGGGTAAGGAAC	0.376000			T	MLL	AL								8	253					0	0	6.4e-05	0	0
PGAM2	5224	broad.mit.edu	37	7	44105125	44105125	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr7:44105125C>A	uc003tjs.2	-	1	39	c.4G>T	c.(4-6)GCC>TCC	p.A2S		NM_000290	NP_000281	P15259	PGAM2_HUMAN	phosphoglycerate mutase 2	2					gluconeogenesis|glycolysis|striated muscle contraction	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity				0						CGGTGAGTGGCCATGGTGGCA	0.607000													29	47					6.90743e-12	5.88659e-10	0.000109025	1	0
TMED4	222068	broad.mit.edu	37	7	44621125	44621125	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr7:44621125A>G	uc003tli.2	-	3	332	c.310T>C	c.(310-312)TCC>CCC	p.S104P	TMED4_uc003tlj.2_Missense_Mutation_p.S45P|TMED4_uc003tlk.2_Missense_Mutation_p.S104P|uc003tll.2_5'Flank	NM_182547	NP_872353	Q7Z7H5	TMED4_HUMAN	transmembrane emp24 protein transport domain	104	GOLD.|Lumenal (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade|transport	endoplasmic reticulum membrane|integral to membrane	signal transducer activity				0						GGCGTGTGGGAGGTGAACGTG	0.557000													32	29					0	0	0.000132358	0	0
Unknown	0	broad.mit.edu	37	7	55841071	55841071	+	RNA	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr7:55841071A>G	uc003tqy.2	+	1		c.200A>G								Homo sapiens mRNA for L-3-phosphoserine-phosphatase homologue.																		GCCTATTACAACTTGCTATAG	0.348000													6	10					0	0	3.59834e-05	0	0
PNPLA8	50640	broad.mit.edu	37	7	108154703	108154704	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr7:108154703_108154704CG>AT	uc003vff.1	-	5	1497_1498	c.1090_1091CG>AT	c.(1090-1092)CGG>ATG	p.R364M	PNPLA8_uc003vfg.1_RNA|PNPLA8_uc003vfh.1_Missense_Mutation_p.R364M|PNPLA8_uc003vfi.1_Missense_Mutation_p.R264M|PNPLA8_uc003vfj.1_Missense_Mutation_p.R364M|PNPLA8_uc003vfk.1_Missense_Mutation_p.R264M	NM_015723	NP_056538	Q9NP80	PLPL8_HUMAN	patatin-like phospholipase domain containing 8	364					fatty acid metabolic process|lipid catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|membrane fraction|perinuclear region of cytoplasm|peroxisomal membrane	ATP binding|calcium-independent phospholipase A2 activity|lysophospholipase activity			breast(2)	2						AACTAATGCCCGGGTCCTGTTA	0.356000													7	412					0	0	6.4e-05	0	0
OR2F2	135948	broad.mit.edu	37	7	143632445	143632446	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr7:143632445_143632446GG>TT	uc011ktv.1	+	1	120_121	c.120_121GG>TT	c.(118-123)CTGGGG>CTTTGG	p.G41W		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TGACAGTGCTGGGGAACTGTCT	0.490000													9	234					0	0	6.4e-05	0	0
ADAM28	10863	broad.mit.edu	37	8	24209520	24209520	+	Silent	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:24209520T>C	uc003xdy.2	+	21	2282	c.2199T>C	c.(2197-2199)CAT>CAC	p.H733H	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.H420H	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	733	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGAAGCCCCATGTGTATGATC	0.378000													39	54					0	0	0.000147903	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729419	37729419	+	Silent	SNP	C	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:37729419C>A	uc003xkm.1	-	4	2945	c.2901G>T	c.(2899-2901)TCG>TCT	p.S967S	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Intron|RAB11FIP1_uc003xkl.1_Silent_p.S296S|RAB11FIP1_uc003xko.1_Silent_p.S296S|RAB11FIP1_uc003xkp.1_Intron	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	967					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			TTTCATCATCCGATGCGACTT	0.453000													6	145					8.12818e-05	0.00660918	8.12818e-05	1	0
XKR4	114786	broad.mit.edu	37	8	56435874	56435874	+	Silent	SNP	C	G	G	rs4263738		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:56435874C>G	uc003xsf.2	+	3	1073	c.1041C>G	c.(1039-1041)GCC>GCG	p.A347A		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	347	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TGTCCCTGGCCTGGGCCTTGG	0.562000													16	15					0	0	5.01169e-05	0	0
HNF4G	3174	broad.mit.edu	37	8	76465335	76465335	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:76465335T>C	uc003yaq.2	+	6	677	c.407T>C	c.(406-408)ATT>ACT	p.I136T	HNF4G_uc003yar.2_Missense_Mutation_p.I173T	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	136					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			ATTGCAAGTATTGGTGATGTC	0.358000													49	56					0	0	0.000147903	0	0
PTK2	5747	broad.mit.edu	37	8	141745382	141745382	+	Silent	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:141745382C>T	uc003yvu.2	-	22	2228	c.1998G>A	c.(1996-1998)CGG>CGA	p.R666R	PTK2_uc003yvo.2_Silent_p.R294R|PTK2_uc011ljq.1_Silent_p.R361R|PTK2_uc003yvp.2_Silent_p.R334R|PTK2_uc003yvq.2_Silent_p.R192R|PTK2_uc003yvr.2_Silent_p.R606R|PTK2_uc003yvs.2_Silent_p.R666R|PTK2_uc003yvt.2_Silent_p.R688R|PTK2_uc003yvv.2_Silent_p.R566R|PTK2_uc011ljr.1_Silent_p.R666R|MIR151_hsa-mir-151|MI0000809_5'Flank	NM_153831	NP_722560	Q05397	FAK1_HUMAN	PTK2 protein tyrosine kinase 2 isoform a	666	Protein kinase.				axon guidance|blood coagulation|cellular component disassembly involved in apoptosis|ephrin receptor signaling pathway|growth hormone receptor signaling pathway|integrin-mediated signaling pathway|peptidyl-tyrosine phosphorylation|protein autophosphorylation|regulation of cell adhesion mediated by integrin|signal complex assembly	cytoskeleton|cytosol|focal adhesion	ATP binding|JUN kinase binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|signal transducer activity			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6	all_cancers(97;1.05e-15)|all_epithelial(106;2.09e-14)|Lung NSC(106;1.61e-06)|all_lung(105;2.5e-06)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;2.72e-05)|Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.137)			TAAACCTGGGCCGCCTGCTGG	0.532000													14	12					0	0	1.49906e-05	0	0
C9orf123	90871	broad.mit.edu	37	9	7799724	7799724	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr9:7799724C>G	uc003zki.2	-	1	55	c.11G>C	c.(10-12)CGG>CCG	p.R4P	C9orf123_uc003zkj.2_Missense_Mutation_p.R4P			Q96GE9	CI123_HUMAN	Homo sapiens cDNA FLJ46908 fis, clone FEBRA2004867.	4						integral to membrane					0		all_cancers(3;0.0539)|Lung NSC(3;3.36e-05)|all_lung(3;0.000156)|all_epithelial(3;0.0356)		GBM - Glioblastoma multiforme(50;0.0561)		CTGGGACAACCGAGACCCCAT	0.642000													3	28					0	0	2.56e-06	0	0
TBC1D13	54662	broad.mit.edu	37	9	131565636	131565636	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr9:131565636C>G	uc010myj.2	+	8	774	c.651C>G	c.(649-651)ATC>ATG	p.I217M	TBC1D13_uc010myk.2_Intron|TBC1D13_uc010myl.2_Missense_Mutation_p.I36M	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	217	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						TCCTGTTCATCTACGCCAAGC	0.552000													32	25					0	0	3.70037e-05	0	0
NXF3	56000	broad.mit.edu	37	X	102337711	102337711	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chrX:102337711C>T	uc004eju.2	-	8	828	c.757G>A	c.(757-759)GTC>ATC	p.V253I	NXF3_uc010noi.1_Missense_Mutation_p.V103I|NXF3_uc011mrw.1_Missense_Mutation_p.V253I|NXF3_uc011mrx.1_Missense_Mutation_p.V164I	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	253						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TCTTCATGGACGTCCAGGGAG	0.478000													69	4					0	0	0.000147903	0	0
DOCK11	139818	broad.mit.edu	37	X	117731503	117731503	+	Silent	SNP	A	T	T			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chrX:117731503A>T	uc004eqp.2	+	21	2436	c.2373A>T	c.(2371-2373)GCA>GCT	p.A791A	DOCK11_uc004eqq.2_Silent_p.A557A	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	791	DHR-1.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TGAATGATGCAGAATCAAGAA	0.388000													70	2					0	0	0.000147903	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223094	118223094	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chrX:118223094A>G	uc004era.3	-	11	2099	c.2099T>C	c.(2098-2100)ATC>ACC	p.I700T		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	700										ovary(4)|skin(1)	5						TTCTAACTGGATATGAGAAGG	0.443000													44	6					0	0	0.000106405	0	0
GPR112	139378	broad.mit.edu	37	X	135429946	135429947	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chrX:135429946_135429947GG>TT	uc004ezu.1	+	6	4372_4373	c.4081_4082GG>TT	c.(4081-4083)GGG>TTG	p.G1361L	GPR112_uc010nsb.1_Missense_Mutation_p.G1156L|GPR112_uc010nsc.1_Missense_Mutation_p.G1128L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1361	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TACCAGTCTTGGGAAAACAGCT	0.470000													6	86					0	0	6.4e-05	0	0
KRT76	51350	broad.mit.edu	37	12	53170736	53170736	+	Frame_Shift_Del	DEL	T	-	-			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr12:53170736delT	uc001sax.2	-	1	394	c.340delA	c.(340-342)AGTfs	p.S114fs		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	114	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						ccaaaaccactacctactcct	0.095													24	31	---	---	---	---					
PSME4	23198	broad.mit.edu	37	2	54147352	54147352	+	Frame_Shift_Del	DEL	C	-	-			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr2:54147352delC	uc002rxp.2	-	19	2454	c.2398delG	c.(2398-2400)GATfs	p.D800fs	PSME4_uc010yop.1_Frame_Shift_Del_p.D686fs|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Frame_Shift_Del_p.D175fs|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	800					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			AGTTTTCCATCCCCACAATGC	0.383													189	280	---	---	---	---					
RGS7BP	401190	broad.mit.edu	37	5	63905047	63905047	+	Frame_Shift_Del	DEL	T	-	-			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:63905047delT	uc003jtj.2	+	6	742	c.742delT	c.(742-744)TTCfs	p.F248fs	RGS7BP_uc011cqu.1_Frame_Shift_Del_p.F115fs	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	248					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		GAAGAGAAGGTTCTTTGGGCT	0.478													38	63	---	---	---	---					
BHMT	635	broad.mit.edu	37	5	78426827	78426828	+	Frame_Shift_Ins	INS	-	A	A			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:78426827_78426828insA	uc003kfu.3	+	8	1214_1215	c.1109_1110insA	c.(1108-1110)CCAfs	p.P370fs	BHMT_uc011cti.1_Frame_Shift_Ins_p.P217fs	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	370					protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	ATGTCAAAGCCAGATGGCTGGG	0.495													105	175	---	---	---	---					
FBXL21	26223	broad.mit.edu	37	5	135276238	135276238	+	Frame_Shift_Del	DEL	A	-	-			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr5:135276238delA	uc010jec.1	+	4	571	c.550delA	c.(550-552)AAAfs	p.K184fs	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	184	LRR 1.				rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATCATCAATCAAAATTGAAGA	0.333													19	44	---	---	---	---					
PLEKHG1	57480	broad.mit.edu	37	6	151152656	151152656	+	Frame_Shift_Del	DEL	T	-	-	rs803411	byFrequency	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr6:151152656delT	uc003qny.1	+	16	2721	c.2409delT	c.(2407-2409)ACTfs	p.T803fs	PLEKHG1_uc011eel.1_Frame_Shift_Del_p.T843fs|PLEKHG1_uc011eem.1_Frame_Shift_Del_p.T862fs|PLEKHG1_uc003qnz.2_Frame_Shift_Del_p.T803fs	NM_001029884	NP_001025055	Q9ULL1	PKHG1_HUMAN	pleckstrin homology domain containing, family G	803					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(37;0.0923)	OV - Ovarian serous cystadenocarcinoma(155;6.69e-13)		ATCAGGCCACTCCCGATCATG	0.512													60	69	---	---	---	---					
OPLAH	26873	broad.mit.edu	37	8	145113801	145113801	+	Splice_Site	DEL	T	-	-			TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	g.chr8:145113801delT	uc003zar.3	-	5	546	c.464_splice	c.e5-1	p.G155_splice	OPLAH_uc003zat.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)								5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CCGTGCGGCCTTCCAGAAAAG	0.677													2	4	---	---	---	---					
