Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EVI5	7813	broad.mit.edu	37	1	93160869	93160869	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:93160869C>G	uc001dox.2	-	7	1049	c.1039G>C	c.(1039-1041)GAG>CAG	p.E347Q	EVI5_uc010otf.1_Missense_Mutation_p.E347Q|EVI5_uc001doy.1_5'Flank	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	347	Dimerization.|Interaction with alpha-tubulin, gamma- tubulin, BIRC5 and FBXO5.|Rab-GAP TBC.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		TAGCTTACCTCAGACATAAAG	0.413000													5	52					0	0	0.001984	0	0
ASH1L	55870	broad.mit.edu	37	1	155451419	155451419	+	Silent	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:155451419T>C	uc009wqq.2	-	3	1722	c.1242A>G	c.(1240-1242)GCA>GCG	p.A414A	ASH1L_uc001fkt.2_Silent_p.A414A|ASH1L_uc009wqr.1_Silent_p.A414A	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	414					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGATCAGACCTGCCAAAGGAC	0.438000													3	134					0	0	0.004672	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517503	158517503	+	Silent	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:158517503A>T	uc010pil.1	-	1	393	c.393T>A	c.(391-393)ATT>ATA	p.I131I		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTGGATTACAAATGGCTACAT	0.473000													8	82					0	0	0.003080	0	0
PRG4	10216	broad.mit.edu	37	1	186276100	186276100	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:186276100A>C	uc001gru.3	+	7	1300	c.1249A>C	c.(1249-1251)ACC>CCC	p.T417P	PRG4_uc001grt.3_Missense_Mutation_p.T376P|PRG4_uc009wyl.2_Missense_Mutation_p.T324P|PRG4_uc009wym.2_Missense_Mutation_p.T283P|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	417	9.|59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCACCACCACCAAGGAGCC	0.652000													8	67					0	0	0.003163	0	0
NUAK2	81788	broad.mit.edu	37	1	205274389	205274389	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:205274389T>C	uc001hce.2	-	6	888	c.761A>G	c.(760-762)GAC>GGC	p.D254G		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	254	Protein kinase.				actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GATCTTATGGTCATGCCCATC	0.572000													15	48					0	0	0.004007	0	0
USH2A	7399	broad.mit.edu	37	1	216138718	216138718	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:216138718C>T	uc001hku.1	-	37	7448	c.7061G>A	c.(7060-7062)CGC>CAC	p.R2354H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2354	Extracellular (Potential).|Fibronectin type-III 10.		R -> H (in USH2A).		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCCATTAGGGCGAAAAGGTGC	0.403000										HNSCC(13;0.011)			43	86					0	0	0.014410	0	0
C1orf55	163859	broad.mit.edu	37	1	226180666	226180666	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:226180666A>C	uc001hpu.3	-	3	329	c.276T>G	c.(274-276)ATT>ATG	p.I92M	C1orf55_uc001hpv.2_Missense_Mutation_p.I92M	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	92										lung(1)	1	Breast(184;0.197)					TTGTCTTCTCAATCTGAGCAC	0.428000													23	36					0	0	0.016522	0	0
FH	2271	broad.mit.edu	37	1	241663812	241663812	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr1:241663812G>A	uc001hyx.2	-	9	1347	c.1315C>T	c.(1315-1317)CAG>TAG	p.Q439*		NM_000143	NP_000134	P07954	FUMH_HUMAN	fumarate hydratase precursor	439					fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			lung(3)|ovary(1)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		GTATTGGCCTGGATTCCCACC	0.368000			Mis|N|F			lieomyomatosis|renal			Hereditary_Leiomyomatosis_and_Renal_Cell_Cancer				74	99					0	0	0.014410	0	0
C11orf80	79703	broad.mit.edu	37	11	66555634	66555634	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr11:66555634T>C	uc001ojf.2	+	5	534	c.527T>C	c.(526-528)ATA>ACA	p.I176T	C11orf80_uc001ojg.2_5'UTR|C11orf80_uc001ojh.2_Intron|C11orf80_uc001oji.2_5'UTR|C11orf80_uc010rpk.1_Missense_Mutation_p.I10T	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	21											0						CACACAGAAATACAGTCCATA	0.433000													3	37					0	0	0.004672	0	0
GLB1L2	89944	broad.mit.edu	37	11	134241359	134241359	+	Silent	SNP	A	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr11:134241359A>G	uc001qhp.2	+	14	1589	c.1401A>G	c.(1399-1401)ACA>ACG	p.T467T	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	467					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		ACTACAAGACAACGAAGATTG	0.542000													65	112					0	0	0.014410	0	0
IPO8	10526	broad.mit.edu	37	12	30787080	30787080	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr12:30787080T>C	uc001rjd.2	-	23	3006	c.2836A>G	c.(2836-2838)AGT>GGT	p.S946G	IPO8_uc001rje.1_Missense_Mutation_p.S435G|IPO8_uc010sjt.1_Missense_Mutation_p.S741G	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	946					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					AGTGGAGTACTGAACCCCTCA	0.403000													5	57					0	0	0.014758	0	0
ULK1	8408	broad.mit.edu	37	12	132395297	132395297	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr12:132395297C>T	uc001uje.2	+	12	1168	c.900C>T	c.(898-900)TCC>TCT	p.S300S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	300	Interaction with GABARAP and GABARAPL2.|Poly-Ser.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GCTCGGGGTCCGGCAGCAGCT	0.662000													24	39					0	0	0.005443	0	0
SNRPN	6638	broad.mit.edu	37	15	25207297	25207297	+	Translation_Start_Site	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr15:25207297C>T	uc001ywp.1	+	5	537	c.-353C>T	c.(-355--351)CACGT>CATGT		SNRPN_uc001ywq.1_Translation_Start_Site|SNRPN_uc001ywr.1_Translation_Start_Site|SNRPN_uc001yws.1_Translation_Start_Site|SNRPN_uc001ywt.1_Translation_Start_Site|SNURF_uc001ywu.2_Silent_p.H17H|SNRPN_uc001ywv.1_Translation_Start_Site|SNRPN_uc001yww.1_Translation_Start_Site|SNRPN_uc001ywx.1_Translation_Start_Site|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Silent_p.H17H	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N						RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		CAGAACAGCACGTACCAGAGG	0.448000									Prader-Willi_syndrome				5	58					0	0	0.014758	0	0
UACA	55075	broad.mit.edu	37	15	70987423	70987423	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr15:70987423C>T	uc002asr.2	-	3	338	c.234G>A	c.(232-234)AAG>AAA	p.K78K	UACA_uc010uke.1_Silent_p.K78K|UACA_uc002asq.2_Silent_p.K65K|UACA_uc010bin.1_Silent_p.K64K	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	78	ANK 2.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						CAAGATTCCCCTTTGAGGTCA	0.353000													17	6					0	0	0.004990	0	0
KIAA0753	9851	broad.mit.edu	37	17	6531560	6531560	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr17:6531560G>A	uc002gde.3	-	3	954	c.595C>T	c.(595-597)CAG>TAG	p.Q199*	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	199						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GGATGAGGCTGAAGTCCCGGA	0.483000													9	122					0	0	0.004482	0	0
TRPV2	51393	broad.mit.edu	37	17	16340169	16340169	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr17:16340169A>G	uc002gpy.2	+	15	2628	c.2261A>G	c.(2260-2262)AAC>AGC	p.N754S	TRPV2_uc002gpz.2_Missense_Mutation_p.N324S|NCRNA00188_uc010vwf.1_5'Flank|NCRNA00188_uc010vwg.1_5'Flank|NCRNA00188_uc010vwh.1_5'Flank|NCRNA00188_uc010cpd.2_5'Flank|NCRNA00188_uc002gqc.2_5'Flank|NCRNA00188_uc002gqb.3_5'Flank|NCRNA00188_uc010vwi.1_5'Flank|NCRNA00188_uc010vwj.1_5'Flank|NCRNA00188_uc002gqa.3_5'Flank|NCRNA00188_uc010vwk.1_5'Flank|NCRNA00188_uc010vwl.1_5'Flank|NCRNA00188_uc010vwm.1_5'Flank|NCRNA00188_uc010vwn.1_5'Flank|NCRNA00188_uc010cpe.2_5'Flank|NCRNA00188_uc010vwo.1_5'Flank|NCRNA00188_uc010vwp.1_5'Flank|SNORD49B_uc010cpf.2_5'Flank	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	754	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCTGAGGAAAACTATGTGCCC	0.562000													48	73					0	0	0.014410	0	0
TTC25	83538	broad.mit.edu	37	17	40101470	40101470	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr17:40101470T>C	uc002hyj.3	+	8	1228	c.1139T>C	c.(1138-1140)ATT>ACT	p.I380T	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Silent_p.L236L	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	380	TPR 6.					cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				CAGCAAGCCATTGACACGTGA	0.428000													10	10					0	0	0.013537	0	0
ENPP7	339221	broad.mit.edu	37	17	77710872	77710872	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr17:77710872C>T	uc002jxa.2	+	4	1079	c.1059C>T	c.(1057-1059)CAC>CAT	p.H353H		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	353				H->A: Loss of activity.	negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ATGGGGAGCACGGCTTTGACA	0.607000													4	78					0	0	0.014758	0	0
SYT4	6860	broad.mit.edu	37	18	40853736	40853736	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr18:40853736C>G	uc002law.2	-	2	1027	c.658G>C	c.(658-660)GAT>CAT	p.D220H	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.D202H|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	220	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						AAGGTCTCATCAAAAGCTGGA	0.403000													28	30					0	0	0.006320	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585305	61585305	+	Missense_Mutation	SNP	T	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr18:61585305T>A	uc010xev.1	+	4	431	c.341T>A	c.(340-342)ATA>AAA	p.I114K	SERPINB10_uc010xew.1_Missense_Mutation_p.I114K	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	114						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				GCCAATGCGATATATGGAGAG	0.363000													5	35					0	0	0.001168	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941242	13941242	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr19:13941242C>T	uc002mxh.1	+	13	2537	c.2348C>T	c.(2347-2349)TCG>TTG	p.S783L	ZSWIM4_uc010xng.1_Missense_Mutation_p.S706L	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	783							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AAGAACCACTCGGCCTTCGAG	0.697000													5	130					0	0	0.001984	0	0
C19orf50	79036	broad.mit.edu	37	19	18679377	18679377	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr19:18679377A>T	uc002njo.2	+	5	609	c.467A>T	c.(466-468)CAG>CTG	p.Q156L	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Missense_Mutation_p.Q156L	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	156							protein binding				0						TCCCATGTCCAGCCTGGCTCC	0.657000													8	117					0	0	0.004482	0	0
NKPD1	284353	broad.mit.edu	37	19	45656458	45656458	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr19:45656458G>A	uc010xxi.1	-	4	1237	c.1237C>T	c.(1237-1239)CGG>TGG	p.R413W		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		GACACCAGCCGCTCGATCTTC	0.617000													3	0					0	0	0.009096	0	0
MYBPC2	4606	broad.mit.edu	37	19	50939282	50939282	+	Silent	SNP	G	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr19:50939282G>T	uc002psf.2	+	4	261	c.210G>T	c.(208-210)GTG>GTT	p.V70V		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	70	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		AGGACGCAGTGGTCGTGGCCA	0.582000													5	4					0.00116845	0.0015055	0.001168	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88890366	88890366	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:88890366C>T	uc002stc.3	-	5	1174	c.972G>A	c.(970-972)AAG>AAA	p.K324K		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	324	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTCCTCCCTTCTTACTGAATG	0.423000													9	136					0	0	0.008291	0	0
SCN2A	6326	broad.mit.edu	37	2	166201262	166201262	+	Silent	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:166201262C>G	uc002udc.2	+	16	3050	c.2760C>G	c.(2758-2760)CTC>CTG	p.L920L	SCN2A_uc002udd.2_Silent_p.L920L|SCN2A_uc002ude.2_Silent_p.L920L	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	920	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTGTGAACTCCCACGCTGGC	0.488000													24	141					0	0	0.018920	0	0
XIRP2	129446	broad.mit.edu	37	2	168105759	168105759	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:168105759G>A	uc002udx.2	+	8	7875	c.7857G>A	c.(7855-7857)CGG>CGA	p.R2619R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.R2444R|XIRP2_uc010fpq.2_Silent_p.R2397R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2444					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTAATGCTCGGATACTAGGAG	0.458000													31	91					0	0	0.019004	0	0
TTN	7273	broad.mit.edu	37	2	179598482	179598482	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:179598482C>A	uc010zfg.1	-	50	12126	c.11902G>T	c.(11902-11904)GGA>TGA	p.G3968*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.G629*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4895							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGATTTTTCCGTCTTCTCTG	0.453000													11	150					3.07112e-06	4.1153e-06	0.010729	1	0
SESTD1	91404	broad.mit.edu	37	2	179986590	179986590	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:179986590G>A	uc002uni.3	-	13	1499	c.1349C>T	c.(1348-1350)TCC>TTC	p.S450F	SESTD1_uc002unh.3_5'UTR	NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	450	Spectrin 2.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			ATAGGCCCAGGATGCCTGATT	0.393000													23	54					0	0	0.016522	0	0
ICA1L	130026	broad.mit.edu	37	2	203693626	203693626	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:203693626T>G	uc002uzh.1	-	3	271	c.107A>C	c.(106-108)AAA>ACA	p.K36T	ICA1L_uc002uzi.1_Missense_Mutation_p.K36T|ICA1L_uc002uzj.2_Missense_Mutation_p.K36T|ICA1L_uc002uzk.1_Missense_Mutation_p.K36T	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	36											0						ATCCTCTTTTTTTCCTGTTGC	0.388000													4	136					0	0	0.009096	0	0
ABCB6	10058	broad.mit.edu	37	2	220074990	220074990	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:220074990G>A	uc002vkc.1	-	18	2659	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	ABCB6_uc010fwe.1_Silent_p.I748I	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	794	ABC transporter.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGATGACGAGGATCTGGTCAG	0.562000													7	92					0	0	0.003080	0	0
LSS	4047	broad.mit.edu	37	21	47615617	47615617	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr21:47615617G>A	uc002zij.2	-	19	1869	c.1790C>T	c.(1789-1791)GCC>GTC	p.A597V	LSS_uc011afv.1_Missense_Mutation_p.A586V|LSS_uc002zil.2_Missense_Mutation_p.A597V|LSS_uc002zik.2_Missense_Mutation_p.A517V	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	597	PFTB 3.				cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					CCCCATACAGGCGAAGGCCTC	0.582000													41	16					0	0	0.013114	0	0
CNOT10	25904	broad.mit.edu	37	3	32766999	32766999	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr3:32766999G>A	uc003cfc.1	+	9	1175	c.920G>A	c.(919-921)AGC>AAC	p.S307N	CNOT10_uc011axi.1_Missense_Mutation_p.S79N|CNOT10_uc003cfd.1_Missense_Mutation_p.S306N|CNOT10_uc003cfe.1_Missense_Mutation_p.S307N|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.S367N|CNOT10_uc010hfw.1_Missense_Mutation_p.S2N	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	307					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						TTTGCCATGAGCAAGCACAAT	0.393000													6	107					0	0	0.001984	0	0
FAM86D	692099	broad.mit.edu	37	3	75476630	75476630	+	Silent	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr3:75476630T>G	uc003dpp.3	-	6	794	c.435A>C	c.(433-435)GTA>GTC	p.V145V	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_Silent_p.V53V|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						GGACCGTCGCTACGTCCCAGT	0.582000													6	29					0	0	0.001984	0	0
LOC728613	728613	broad.mit.edu	37	5	1632962	1632962	+	RNA	SNP	T	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr5:1632962T>A	uc003jcq.3	-	2		c.258A>T			LOC728613_uc003jcp.3_RNA|LOC728613_uc003jcr.2_RNA|LOC728613_uc003jcs.2_RNA|LOC728613_uc010ith.1_RNA|LOC728613_uc003jct.2_RNA|LOC728613_uc003jcu.2_RNA|LOC728613_uc003jcv.2_RNA|LOC728613_uc010iti.1_RNA|LOC728613_uc003jcw.2_RNA	NR_003713				Homo sapiens cDNA, FLJ97024.												0						CCACTCACCGTTGGAGAGAGC	0.498000													5	39					0	0	0.001984	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629374	9629374	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr5:9629374G>A	uc003jem.1	-	1	1090	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	257	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						ACAGAAAGATGAACCTTCTGA	0.378000													5	68					0	0	0.001168	0	0
SHROOM1	134549	broad.mit.edu	37	5	132161119	132161119	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr5:132161119C>T	uc003kxx.2	-	4	1519	c.714G>A	c.(712-714)CCG>CCA	p.P238P	SHROOM1_uc003kxy.1_Silent_p.P238P	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	238					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATTCCCGCGCCGGCCCACCGC	0.682000													7	2					0	0	0.003080	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720783	140720783	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr5:140720783T>G	uc003ljk.1	+	1	2430	c.2245T>G	c.(2245-2247)TTC>GTC	p.F749V	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.F749V|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTCGGGCTTTCCTGCAGAC	0.627000													3	100					0	0	0.004672	0	0
EPHB6	2051	broad.mit.edu	37	7	142561393	142561393	+	Silent	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr7:142561393A>T	uc011kst.1	+	6	892	c.105A>T	c.(103-105)GTA>GTT	p.V35V	EPHB6_uc011ksu.1_Silent_p.V35V|EPHB6_uc003wbs.2_Intron|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Intron	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	35	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGGCAGAGGTATTGCTGGACA	0.582000													30	36					0	0	0.012213	0	0
COL22A1	169044	broad.mit.edu	37	8	139767734	139767734	+	Silent	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr8:139767734T>C	uc003yvd.2	-	20	2415	c.1968A>G	c.(1966-1968)AAA>AAG	p.K656K	COL22A1_uc011ljo.1_5'UTR	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	656	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTGTTCCCCTTTCAAGCCCT	0.507000										HNSCC(7;0.00092)			3	222					0	0	0.009096	0	0
KIAA1984	84960	broad.mit.edu	37	9	139694856	139694856	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr9:139694856G>A	uc004cjf.2	+	5	502	c.454G>A	c.(454-456)GAG>AAG	p.E152K		NM_001039374	NP_001034463	Q5T5S1	K1984_HUMAN	hypothetical protein LOC84960	152	Potential.									ovary(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.33e-06)|Epithelial(140;0.000124)		CCGCCAGCTGGAGAACAACAT	0.602000													6	11					0	0	0.001168	0	0
ATP2B3	492	broad.mit.edu	37	X	152823737	152823737	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chrX:152823737C>T	uc004fht.1	+	15	2727	c.2601C>T	c.(2599-2601)GCC>GCT	p.A867A	ATP2B3_uc004fhs.1_Silent_p.A867A|ATP2B3_uc010nuf.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	867	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGATCGTGGCCTTCACAGGTG	0.582000													4	102					0	0	0.001168	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946407	16946407	+	RNA	SNP	T	G	G	rs10796418	by1000genomes	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:16946407T>G	uc010ocf.1	-	3		c.491A>C			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCAATCTCCTCACTCAGCTG	0.672000													4	8					0	0	0.014758	0	0
EVI5	7813	broad.mit.edu	37	1	93160869	93160869	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:93160869C>G	uc001dox.2	-	7	1049	c.1039G>C	c.(1039-1041)GAG>CAG	p.E347Q	EVI5_uc010otf.1_Missense_Mutation_p.E347Q|EVI5_uc001doy.1_5'Flank	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	347	Dimerization.|Interaction with alpha-tubulin, gamma- tubulin, BIRC5 and FBXO5.|Rab-GAP TBC.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		TAGCTTACCTCAGACATAAAG	0.413000													5	52					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	1	148889678	148889678	+	RNA	SNP	C	T	T	rs4950650		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:148889678C>T	uc009wkv.1	+	7		c.765C>T								Homo sapiens cDNA, FLJ17483.																		ACCCTATATGCCTGCGTCTAA	0.398000													16	56					0	0	0.010504	0	0
ASH1L	55870	broad.mit.edu	37	1	155451419	155451419	+	Silent	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:155451419T>C	uc009wqq.2	-	3	1722	c.1242A>G	c.(1240-1242)GCA>GCG	p.A414A	ASH1L_uc001fkt.2_Silent_p.A414A|ASH1L_uc009wqr.1_Silent_p.A414A	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	414					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TGATCAGACCTGCCAAAGGAC	0.438000													3	134					0	0	0.004672	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517503	158517503	+	Silent	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:158517503A>T	uc010pil.1	-	1	393	c.393T>A	c.(391-393)ATT>ATA	p.I131I		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	131	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTGGATTACAAATGGCTACAT	0.473000													8	82					0	0	0.003080	0	0
NUAK2	81788	broad.mit.edu	37	1	205274389	205274389	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:205274389T>C	uc001hce.2	-	6	888	c.761A>G	c.(760-762)GAC>GGC	p.D254G		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	254	Protein kinase.				actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GATCTTATGGTCATGCCCATC	0.572000													15	48					0	0	0.004007	0	0
USH2A	7399	broad.mit.edu	37	1	216138718	216138718	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:216138718C>T	uc001hku.1	-	37	7448	c.7061G>A	c.(7060-7062)CGC>CAC	p.R2354H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2354	Extracellular (Potential).|Fibronectin type-III 10.		R -> H (in USH2A).		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TCCATTAGGGCGAAAAGGTGC	0.403000										HNSCC(13;0.011)			43	86					0	0	0.014410	0	0
C1orf55	163859	broad.mit.edu	37	1	226180666	226180666	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:226180666A>C	uc001hpu.3	-	3	329	c.276T>G	c.(274-276)ATT>ATG	p.I92M	C1orf55_uc001hpv.2_Missense_Mutation_p.I92M	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	92										lung(1)	1	Breast(184;0.197)					TTGTCTTCTCAATCTGAGCAC	0.428000													23	36					0	0	0.016522	0	0
FH	2271	broad.mit.edu	37	1	241663812	241663812	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr1:241663812G>A	uc001hyx.2	-	9	1347	c.1315C>T	c.(1315-1317)CAG>TAG	p.Q439*		NM_000143	NP_000134	P07954	FUMH_HUMAN	fumarate hydratase precursor	439					fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			lung(3)|ovary(1)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		GTATTGGCCTGGATTCCCACC	0.368000			Mis|N|F			lieomyomatosis|renal			Hereditary_Leiomyomatosis_and_Renal_Cell_Cancer				74	99					0	0	0.014410	0	0
C11orf80	79703	broad.mit.edu	37	11	66555634	66555634	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr11:66555634T>C	uc001ojf.2	+	5	534	c.527T>C	c.(526-528)ATA>ACA	p.I176T	C11orf80_uc001ojg.2_5'UTR|C11orf80_uc001ojh.2_Intron|C11orf80_uc001oji.2_5'UTR|C11orf80_uc010rpk.1_Missense_Mutation_p.I10T	NM_024650	NP_078926	Q8N6T0	CK080_HUMAN	hypothetical protein LOC79703	21											0						CACACAGAAATACAGTCCATA	0.433000													3	37					0	0	0.004672	0	0
GLB1L2	89944	broad.mit.edu	37	11	134241359	134241359	+	Silent	SNP	A	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr11:134241359A>G	uc001qhp.2	+	14	1589	c.1401A>G	c.(1399-1401)ACA>ACG	p.T467T	GLB1L2_uc009zdg.1_RNA	NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	467					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		ACTACAAGACAACGAAGATTG	0.542000													65	112					0	0	0.014410	0	0
IPO8	10526	broad.mit.edu	37	12	30787080	30787080	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr12:30787080T>C	uc001rjd.2	-	23	3006	c.2836A>G	c.(2836-2838)AGT>GGT	p.S946G	IPO8_uc001rje.1_Missense_Mutation_p.S435G|IPO8_uc010sjt.1_Missense_Mutation_p.S741G	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	946					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					AGTGGAGTACTGAACCCCTCA	0.403000													5	57					0	0	0.014758	0	0
ULK1	8408	broad.mit.edu	37	12	132395297	132395297	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr12:132395297C>T	uc001uje.2	+	12	1168	c.900C>T	c.(898-900)TCC>TCT	p.S300S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	300	Interaction with GABARAP and GABARAPL2.|Poly-Ser.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		GCTCGGGGTCCGGCAGCAGCT	0.662000													24	39					0	0	0.005443	0	0
SNRPN	6638	broad.mit.edu	37	15	25207297	25207297	+	Translation_Start_Site	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr15:25207297C>T	uc001ywp.1	+	5	537	c.-353C>T	c.(-355--351)CACGT>CATGT		SNRPN_uc001ywq.1_Translation_Start_Site|SNRPN_uc001ywr.1_Translation_Start_Site|SNRPN_uc001yws.1_Translation_Start_Site|SNRPN_uc001ywt.1_Translation_Start_Site|SNURF_uc001ywu.2_Silent_p.H17H|SNRPN_uc001ywv.1_Translation_Start_Site|SNRPN_uc001yww.1_Translation_Start_Site|SNRPN_uc001ywx.1_Translation_Start_Site|SNRPN_uc001ywz.1_RNA|PAR-SN_uc001yxa.1_RNA|SNRPN_uc001ywy.1_Silent_p.H17H	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N						RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		CAGAACAGCACGTACCAGAGG	0.448000									Prader-Willi_syndrome				5	58					0	0	0.014758	0	0
UACA	55075	broad.mit.edu	37	15	70987423	70987423	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr15:70987423C>T	uc002asr.2	-	3	338	c.234G>A	c.(232-234)AAG>AAA	p.K78K	UACA_uc010uke.1_Silent_p.K78K|UACA_uc002asq.2_Silent_p.K65K|UACA_uc010bin.1_Silent_p.K64K	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	78	ANK 2.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						CAAGATTCCCCTTTGAGGTCA	0.353000													17	6					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	15	102292770	102292770	+	Nonsense_Mutation	SNP	C	T	T	rs149751844	by1000genomes	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr15:102292770C>T	uc010usj.1	+	4	417	c.358C>T	c.(358-360)CGA>TGA	p.R120*	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		AGCGGCGCGACGAGATGCTGC	0.597000													3	7					0	0	0.014758	0	0
KIAA0753	9851	broad.mit.edu	37	17	6531560	6531560	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr17:6531560G>A	uc002gde.3	-	3	954	c.595C>T	c.(595-597)CAG>TAG	p.Q199*	KIAA0753_uc010clo.2_5'UTR|KIAA0753_uc010vte.1_5'UTR	NM_014804	NP_055619	Q2KHM9	K0753_HUMAN	hypothetical protein LOC9851	199						centrosome					0				COAD - Colon adenocarcinoma(228;0.157)		GGATGAGGCTGAAGTCCCGGA	0.483000													9	122					0	0	0.004482	0	0
TRPV2	51393	broad.mit.edu	37	17	16340169	16340169	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr17:16340169A>G	uc002gpy.2	+	15	2628	c.2261A>G	c.(2260-2262)AAC>AGC	p.N754S	TRPV2_uc002gpz.2_Missense_Mutation_p.N324S|NCRNA00188_uc010vwf.1_5'Flank|NCRNA00188_uc010vwg.1_5'Flank|NCRNA00188_uc010vwh.1_5'Flank|NCRNA00188_uc010cpd.2_5'Flank|NCRNA00188_uc002gqc.2_5'Flank|NCRNA00188_uc002gqb.3_5'Flank|NCRNA00188_uc010vwi.1_5'Flank|NCRNA00188_uc010vwj.1_5'Flank|NCRNA00188_uc002gqa.3_5'Flank|NCRNA00188_uc010vwk.1_5'Flank|NCRNA00188_uc010vwl.1_5'Flank|NCRNA00188_uc010vwm.1_5'Flank|NCRNA00188_uc010vwn.1_5'Flank|NCRNA00188_uc010cpe.2_5'Flank|NCRNA00188_uc010vwo.1_5'Flank|NCRNA00188_uc010vwp.1_5'Flank|SNORD49B_uc010cpf.2_5'Flank	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	754	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCTGAGGAAAACTATGTGCCC	0.562000													48	73					0	0	0.014410	0	0
TTC25	83538	broad.mit.edu	37	17	40101470	40101470	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr17:40101470T>C	uc002hyj.3	+	8	1228	c.1139T>C	c.(1138-1140)ATT>ACT	p.I380T	TTC25_uc010cxt.2_RNA|TTC25_uc010cxs.1_Silent_p.L236L	NM_031421	NP_113609	Q96NG3	TTC25_HUMAN	tetratricopeptide repeat domain 25	380	TPR 6.					cytoplasm	protein binding			ovary(1)	1		all_cancers(22;8.16e-06)|Breast(137;0.000143)|all_epithelial(22;0.000236)				CAGCAAGCCATTGACACGTGA	0.428000													10	10					0	0	0.013537	0	0
ENPP7	339221	broad.mit.edu	37	17	77710872	77710872	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr17:77710872C>T	uc002jxa.2	+	4	1079	c.1059C>T	c.(1057-1059)CAC>CAT	p.H353H		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	353				H->A: Loss of activity.	negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			ATGGGGAGCACGGCTTTGACA	0.607000													4	78					0	0	0.014758	0	0
SYT4	6860	broad.mit.edu	37	18	40853736	40853736	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr18:40853736C>G	uc002law.2	-	2	1027	c.658G>C	c.(658-660)GAT>CAT	p.D220H	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.D202H|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	220	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						AAGGTCTCATCAAAAGCTGGA	0.403000													28	30					0	0	0.006320	0	0
SERPINB10	5273	broad.mit.edu	37	18	61585305	61585305	+	Missense_Mutation	SNP	T	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr18:61585305T>A	uc010xev.1	+	4	431	c.341T>A	c.(340-342)ATA>AAA	p.I114K	SERPINB10_uc010xew.1_Missense_Mutation_p.I114K	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	114						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				GCCAATGCGATATATGGAGAG	0.363000													5	35					0	0	0.001168	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13941242	13941242	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr19:13941242C>T	uc002mxh.1	+	13	2537	c.2348C>T	c.(2347-2349)TCG>TTG	p.S783L	ZSWIM4_uc010xng.1_Missense_Mutation_p.S706L	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	783							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AAGAACCACTCGGCCTTCGAG	0.697000													5	130					0	0	0.001984	0	0
C19orf50	79036	broad.mit.edu	37	19	18679377	18679377	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr19:18679377A>T	uc002njo.2	+	5	609	c.467A>T	c.(466-468)CAG>CTG	p.Q156L	C19orf50_uc002njp.2_RNA|C19orf50_uc002njq.2_Missense_Mutation_p.Q156L	NM_024069	NP_076974	Q9BQD3	CS050_HUMAN	hypothetical protein LOC79036	156							protein binding				0						TCCCATGTCCAGCCTGGCTCC	0.657000													8	117					0	0	0.004482	0	0
NKPD1	284353	broad.mit.edu	37	19	45656458	45656458	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr19:45656458G>A	uc010xxi.1	-	4	1237	c.1237C>T	c.(1237-1239)CGG>TGG	p.R413W		NM_198478	NP_940880			NTPase, KAP family P-loop domain containing 1												0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		GACACCAGCCGCTCGATCTTC	0.617000													3	0					0	0	0.009096	0	0
MYBPC2	4606	broad.mit.edu	37	19	50939282	50939282	+	Silent	SNP	G	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr19:50939282G>T	uc002psf.2	+	4	261	c.210G>T	c.(208-210)GTG>GTT	p.V70V		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	70	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		AGGACGCAGTGGTCGTGGCCA	0.582000													5	4					0.00116845	0.0015055	0.001168	1	0
EIF2AK3	9451	broad.mit.edu	37	2	88890366	88890366	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:88890366C>T	uc002stc.3	-	5	1174	c.972G>A	c.(970-972)AAG>AAA	p.K324K		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	324	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						GTCCTCCCTTCTTACTGAATG	0.423000													9	136					0	0	0.008291	0	0
SCN2A	6326	broad.mit.edu	37	2	166201262	166201262	+	Silent	SNP	C	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:166201262C>G	uc002udc.2	+	16	3050	c.2760C>G	c.(2758-2760)CTC>CTG	p.L920L	SCN2A_uc002udd.2_Silent_p.L920L|SCN2A_uc002ude.2_Silent_p.L920L	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	920	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTGTGAACTCCCACGCTGGC	0.488000													24	141					0	0	0.018920	0	0
XIRP2	129446	broad.mit.edu	37	2	168105759	168105759	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:168105759G>A	uc002udx.2	+	8	7875	c.7857G>A	c.(7855-7857)CGG>CGA	p.R2619R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.R2444R|XIRP2_uc010fpq.2_Silent_p.R2397R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2444					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTAATGCTCGGATACTAGGAG	0.458000													31	91					0	0	0.019004	0	0
TTN	7273	broad.mit.edu	37	2	179598482	179598482	+	Nonsense_Mutation	SNP	C	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:179598482C>A	uc010zfg.1	-	50	12126	c.11902G>T	c.(11902-11904)GGA>TGA	p.G3968*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.G629*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4895							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGATTTTTCCGTCTTCTCTG	0.453000													11	150					3.07112e-06	4.03461e-06	0.010729	1	0
SESTD1	91404	broad.mit.edu	37	2	179986590	179986590	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:179986590G>A	uc002uni.3	-	13	1499	c.1349C>T	c.(1348-1350)TCC>TTC	p.S450F	SESTD1_uc002unh.3_5'UTR	NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	450	Spectrin 2.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			ATAGGCCCAGGATGCCTGATT	0.393000													23	54					0	0	0.016522	0	0
ICA1L	130026	broad.mit.edu	37	2	203693626	203693626	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:203693626T>G	uc002uzh.1	-	3	271	c.107A>C	c.(106-108)AAA>ACA	p.K36T	ICA1L_uc002uzi.1_Missense_Mutation_p.K36T|ICA1L_uc002uzj.2_Missense_Mutation_p.K36T|ICA1L_uc002uzk.1_Missense_Mutation_p.K36T	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	36											0						ATCCTCTTTTTTTCCTGTTGC	0.388000													4	136					0	0	0.009096	0	0
ABCB6	10058	broad.mit.edu	37	2	220074990	220074990	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:220074990G>A	uc002vkc.1	-	18	2659	c.2382C>T	c.(2380-2382)ATC>ATT	p.I794I	ABCB6_uc010fwe.1_Silent_p.I748I	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	794	ABC transporter.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGATGACGAGGATCTGGTCAG	0.562000													7	92					0	0	0.003080	0	0
LSS	4047	broad.mit.edu	37	21	47615617	47615617	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr21:47615617G>A	uc002zij.2	-	19	1869	c.1790C>T	c.(1789-1791)GCC>GTC	p.A597V	LSS_uc011afv.1_Missense_Mutation_p.A586V|LSS_uc002zil.2_Missense_Mutation_p.A597V|LSS_uc002zik.2_Missense_Mutation_p.A517V	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	597	PFTB 3.				cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					CCCCATACAGGCGAAGGCCTC	0.582000													41	16					0	0	0.013114	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659591	24659591	+	RNA	SNP	A	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr22:24659591A>G	uc002zzs.3	+	7		c.3323A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ACTCACTGACATCGAAGGCTG	0.632000													4	17					0	0	0.014758	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659593	24659593	+	RNA	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr22:24659593C>T	uc002zzs.3	+	7		c.3325C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TCACTGACATCGAAGGCTGCC	0.632000													4	18					0	0	0.001984	0	0
CNOT10	25904	broad.mit.edu	37	3	32766999	32766999	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr3:32766999G>A	uc003cfc.1	+	9	1175	c.920G>A	c.(919-921)AGC>AAC	p.S307N	CNOT10_uc011axi.1_Missense_Mutation_p.S79N|CNOT10_uc003cfd.1_Missense_Mutation_p.S306N|CNOT10_uc003cfe.1_Missense_Mutation_p.S307N|CNOT10_uc010hfv.1_RNA|CNOT10_uc011axj.1_Missense_Mutation_p.S367N|CNOT10_uc010hfw.1_Missense_Mutation_p.S2N	NM_015442	NP_056257	Q9H9A5	CNOTA_HUMAN	CCR4-NOT transcription complex, subunit 10	307					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	protein binding			central_nervous_system(1)|skin(1)	2						TTTGCCATGAGCAAGCACAAT	0.393000													6	107					0	0	0.001984	0	0
FAM86D	692099	broad.mit.edu	37	3	75476630	75476630	+	Silent	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr3:75476630T>G	uc003dpp.3	-	6	794	c.435A>C	c.(433-435)GTA>GTC	p.V145V	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_Silent_p.V53V|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						GGACCGTCGCTACGTCCCAGT	0.582000													6	29					0	0	0.001984	0	0
LOC728613	728613	broad.mit.edu	37	5	1632962	1632962	+	RNA	SNP	T	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr5:1632962T>A	uc003jcq.3	-	2		c.258A>T			LOC728613_uc003jcp.3_RNA|LOC728613_uc003jcr.2_RNA|LOC728613_uc003jcs.2_RNA|LOC728613_uc010ith.1_RNA|LOC728613_uc003jct.2_RNA|LOC728613_uc003jcu.2_RNA|LOC728613_uc003jcv.2_RNA|LOC728613_uc010iti.1_RNA|LOC728613_uc003jcw.2_RNA	NR_003713				Homo sapiens cDNA, FLJ97024.												0						CCACTCACCGTTGGAGAGAGC	0.498000													5	39					0	0	0.001984	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629374	9629374	+	Silent	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr5:9629374G>A	uc003jem.1	-	1	1090	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	257	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						ACAGAAAGATGAACCTTCTGA	0.378000													5	68					0	0	0.001168	0	0
SHROOM1	134549	broad.mit.edu	37	5	132161119	132161119	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr5:132161119C>T	uc003kxx.2	-	4	1519	c.714G>A	c.(712-714)CCG>CCA	p.P238P	SHROOM1_uc003kxy.1_Silent_p.P238P	NM_133456	NP_597713	Q2M3G4	SHRM1_HUMAN	shroom family member 1	238					actin filament bundle assembly|cell morphogenesis	cytoplasm|microtubule	actin filament binding			pancreas(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATTCCCGCGCCGGCCCACCGC	0.682000													7	2					0	0	0.003080	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720783	140720783	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr5:140720783T>G	uc003ljk.1	+	1	2430	c.2245T>G	c.(2245-2247)TTC>GTC	p.F749V	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Missense_Mutation_p.F749V|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTCGGGCTTTCCTGCAGAC	0.627000													3	100					0	0	0.004672	0	0
EPHB6	2051	broad.mit.edu	37	7	142561393	142561393	+	Silent	SNP	A	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr7:142561393A>T	uc011kst.1	+	6	892	c.105A>T	c.(103-105)GTA>GTT	p.V35V	EPHB6_uc011ksu.1_Silent_p.V35V|EPHB6_uc003wbs.2_Intron|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Intron	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	35	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGGCAGAGGTATTGCTGGACA	0.582000													30	36					0	0	0.012213	0	0
COL22A1	169044	broad.mit.edu	37	8	139767734	139767734	+	Silent	SNP	T	C	C			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr8:139767734T>C	uc003yvd.2	-	20	2415	c.1968A>G	c.(1966-1968)AAA>AAG	p.K656K	COL22A1_uc011ljo.1_5'UTR	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	656	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTGTTCCCCTTTCAAGCCCT	0.507000										HNSCC(7;0.00092)			3	222					0	0	0.009096	0	0
KIAA1984	84960	broad.mit.edu	37	9	139694856	139694856	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr9:139694856G>A	uc004cjf.2	+	5	502	c.454G>A	c.(454-456)GAG>AAG	p.E152K		NM_001039374	NP_001034463	Q5T5S1	K1984_HUMAN	hypothetical protein LOC84960	152	Potential.									ovary(1)	1	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.33e-06)|Epithelial(140;0.000124)		CCGCCAGCTGGAGAACAACAT	0.602000													6	11					0	0	0.001168	0	0
ATP2B3	492	broad.mit.edu	37	X	152823737	152823737	+	Silent	SNP	C	T	T			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chrX:152823737C>T	uc004fht.1	+	15	2727	c.2601C>T	c.(2599-2601)GCC>GCT	p.A867A	ATP2B3_uc004fhs.1_Silent_p.A867A|ATP2B3_uc010nuf.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	867	Helical; (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGATCGTGGCCTTCACAGGTG	0.582000													4	102					0	0	0.001168	0	0
KLHL35	283212	broad.mit.edu	37	11	75140917	75140917	+	Frame_Shift_Del	DEL	A	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr11:75140917delA	uc001owm.1	-	1	317	c.98delT	c.(97-99)CTGfs	p.L33fs		NM_001039548	NP_001034637	Q6PF15	KLH35_HUMAN	kelch-like 35	33	BACK.										0						CACCTTCTCCAGGAAGTAAGC	0.751													2	4	---	---	---	---					
PUS3	83480	broad.mit.edu	37	11	125766029	125766029	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr11:125766029delT	uc001qcy.2	-	2	249	c.151delA	c.(151-153)ACTfs	p.T51fs	HYLS1_uc009zbv.2_Intron|HYLS1_uc001qcx.3_Intron	NM_031307	NP_112597	Q9BZE2	PUS3_HUMAN	pseudouridylate synthase 3	51						nucleus	RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.043)		GCACGCTTAGTTTTTCCAGCT	0.448													18	227	---	---	---	---					
C12orf41	54934	broad.mit.edu	37	12	49062988	49062988	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr12:49062988delT	uc001rrx.2	-	6	852	c.777delA	c.(775-777)AAAfs	p.K259fs	C12orf41_uc001rrw.2_Frame_Shift_Del_p.K64fs|C12orf41_uc001rrz.2_Frame_Shift_Del_p.K442fs|C12orf41_uc001rry.2_RNA|C12orf41_uc001rrv.2_Translation_Start_Site|SNORA2B_uc001rsc.1_5'Flank	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	259										ovary(2)	2						GTCGCAGACATTTTAATCGCT	0.502													2	4	---	---	---	---					
B2M	567	broad.mit.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr15:45003781_45003782delCT	uc001zuc.2	+	1	97_98	c.37_38delCT	c.(37-39)CTCfs	p.L13fs	B2M_uc010uek.1_Frame_Shift_Del_p.L13fs|B2M_uc010bdx.1_Frame_Shift_Del_p.L13fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	13					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GCTCGCGCTACTCTCTCTTTCT	0.614													10	50	---	---	---	---					
B2M	567	broad.mit.edu	37	15	45007645	45007646	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr15:45007645_45007646insA	uc001zuc.2	+	2	152_153	c.92_93insA	c.(91-93)TCAfs	p.S31fs	B2M_uc010uek.1_Frame_Shift_Ins_p.S31fs|B2M_uc010bdx.1_Frame_Shift_Ins_p.S31fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	31	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		CAGGTTTACTCACGTCATCCAG	0.411													8	108	---	---	---	---					
STARD3	10948	broad.mit.edu	37	17	37809843	37809854	+	In_Frame_Del	DEL	CCTCCCTGGGCT	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr17:37809843_37809854delCCTCCCTGGGCT	uc002hsd.2	+	2	183_194	c.59_70delCCTCCCTGGGCT	c.(58-72)GCCTCCCTGGGCTCC>GCC	p.SLGS21del	STARD3_uc010weg.1_In_Frame_Del_p.SLGS21del|STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_In_Frame_Del_p.SLGS21del|STARD3_uc010wei.1_In_Frame_Del_p.SLGS21del|STARD3_uc002hsf.2_5'UTR	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	21_24	Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCTGCCGTGGCCTCCCTGGGCTCCTCACTGTC	0.684											OREG0024381	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	40	---	---	---	---					
TAF1B	9014	broad.mit.edu	37	2	10059757	10059763	+	Frame_Shift_Del	DEL	GCACACT	-	-	rs59159809		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr2:10059757_10059763delGCACACT	uc002qzz.2	+	14	1473_1479	c.1373_1379delGCACACT	c.(1372-1380)AGCACACTGfs	p.S458fs	TAF1B_uc002qzy.3_Frame_Shift_Del_p.S458fs|TAF1B_uc010yja.1_Frame_Shift_Del_p.S203fs|TAF1B_uc010exd.2_Frame_Shift_Del_p.S203fs	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	458_460					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AAACAATTTAGCACACTGGTCGAGTCA	0.285													17	84	---	---	---	---					
TCFL5	10732	broad.mit.edu	37	20	61490803	61490806	+	Frame_Shift_Del	DEL	AGAA	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr20:61490803_61490806delAGAA	uc002ydp.2	-	3	997_1000	c.904_907delTTCT	c.(904-909)TTCTGTfs	p.F302fs	TCFL5_uc002ydo.2_Frame_Shift_Del_p.F75fs|TCFL5_uc002ydq.2_Frame_Shift_Del_p.F302fs	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	302_303					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					TGCTGATAACAGAAAGAAAATGCT	0.387													74	140	---	---	---	---					
NF2	4771	broad.mit.edu	37	22	30061052	30061052	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr22:30061052delT	uc003age.3	+	9	1327	c.884delT	c.(883-885)CTGfs	p.L295fs	NF2_uc003afy.3_Frame_Shift_Del_p.L295fs|NF2_uc003afz.3_Frame_Shift_Del_p.L212fs|NF2_uc003agf.3_Frame_Shift_Del_p.L295fs|NF2_uc003agb.3_Frame_Shift_Del_p.L218fs|NF2_uc003agc.3_Frame_Shift_Del_p.L257fs|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Frame_Shift_Del_p.L295fs|NF2_uc003aga.3_Frame_Shift_Del_p.L253fs|NF2_uc003agh.3_Frame_Shift_Del_p.L254fs|NF2_uc003agi.3_Frame_Shift_Del_p.L212fs|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Frame_Shift_Del_p.L257fs|NF2_uc010gvp.2_5'UTR	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	295	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.L127_D382del(1)|p.F271_L295del(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GTTAATAAGCTGGTAAGTTGA	0.333			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				18	6	---	---	---	---					
CACNG2	10369	broad.mit.edu	37	22	37098492	37098492	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr22:37098492delT	uc003aps.1	-	1	412	c.130delA	c.(130-132)AGTfs	p.S44fs	uc003apt.1_5'Flank	NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	44					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TCACTGACACTTTTGGTCTTG	0.463													120	55	---	---	---	---					
MSH3	4437	broad.mit.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	-	-	rs3045983		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	g.chr5:79950742_79950750delCCCCCAGCT	uc003kgz.2	+	1	449_457	c.196_204delCCCCCAGCT	c.(196-204)CCCCCAGCTdel	p.PPA66del	DHFR_uc011ctl.1_5'Flank|DHFR_uc011ctm.1_5'Flank|DHFR_uc010jap.1_5'Flank|DHFR_uc003kgx.1_In_Frame_Del_p.11_14GAGG>G|DHFR_uc003kgy.1_5'UTR	NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	66_68					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		gCCCCCAGCGCCCCCAGCTCCCGCCTTCC	0.598								MMR					7	2	---	---	---	---					
KLHL35	283212	broad.mit.edu	37	11	75140917	75140917	+	Frame_Shift_Del	DEL	A	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr11:75140917delA	uc001owm.1	-	1	317	c.98delT	c.(97-99)CTGfs	p.L33fs		NM_001039548	NP_001034637	Q6PF15	KLH35_HUMAN	kelch-like 35	33	BACK.										0						CACCTTCTCCAGGAAGTAAGC	0.751													2	4	---	---	---	---					
PUS3	83480	broad.mit.edu	37	11	125766029	125766029	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr11:125766029delT	uc001qcy.2	-	2	249	c.151delA	c.(151-153)ACTfs	p.T51fs	HYLS1_uc009zbv.2_Intron|HYLS1_uc001qcx.3_Intron	NM_031307	NP_112597	Q9BZE2	PUS3_HUMAN	pseudouridylate synthase 3	51						nucleus	RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.043)		GCACGCTTAGTTTTTCCAGCT	0.448													18	227	---	---	---	---					
C12orf41	54934	broad.mit.edu	37	12	49062988	49062988	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr12:49062988delT	uc001rrx.2	-	6	852	c.777delA	c.(775-777)AAAfs	p.K259fs	C12orf41_uc001rrw.2_Frame_Shift_Del_p.K64fs|C12orf41_uc001rrz.2_Frame_Shift_Del_p.K442fs|C12orf41_uc001rry.2_RNA|C12orf41_uc001rrv.2_Translation_Start_Site|SNORA2B_uc001rsc.1_5'Flank	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	259										ovary(2)	2						GTCGCAGACATTTTAATCGCT	0.502													2	4	---	---	---	---					
B2M	567	broad.mit.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr15:45003781_45003782delCT	uc001zuc.2	+	1	97_98	c.37_38delCT	c.(37-39)CTCfs	p.L13fs	B2M_uc010uek.1_Frame_Shift_Del_p.L13fs|B2M_uc010bdx.1_Frame_Shift_Del_p.L13fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	13					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GCTCGCGCTACTCTCTCTTTCT	0.614													10	50	---	---	---	---					
B2M	567	broad.mit.edu	37	15	45007645	45007646	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr15:45007645_45007646insA	uc001zuc.2	+	2	152_153	c.92_93insA	c.(91-93)TCAfs	p.S31fs	B2M_uc010uek.1_Frame_Shift_Ins_p.S31fs|B2M_uc010bdx.1_Frame_Shift_Ins_p.S31fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	31	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		CAGGTTTACTCACGTCATCCAG	0.411													8	108	---	---	---	---					
STARD3	10948	broad.mit.edu	37	17	37809843	37809854	+	In_Frame_Del	DEL	CCTCCCTGGGCT	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr17:37809843_37809854delCCTCCCTGGGCT	uc002hsd.2	+	2	183_194	c.59_70delCCTCCCTGGGCT	c.(58-72)GCCTCCCTGGGCTCC>GCC	p.SLGS21del	STARD3_uc010weg.1_In_Frame_Del_p.SLGS21del|STARD3_uc010weh.1_RNA|STARD3_uc002hse.2_In_Frame_Del_p.SLGS21del|STARD3_uc010wei.1_In_Frame_Del_p.SLGS21del|STARD3_uc002hsf.2_5'UTR	NM_006804	NP_006795	Q14849	STAR3_HUMAN	StAR-related lipid transfer (START) domain	21_24	Cytoplasmic (Potential).				cholesterol metabolic process|mitochondrial transport|steroid biosynthetic process	integral to membrane|late endosome membrane	cholesterol binding|cholesterol transporter activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CCTGCCGTGGCCTCCCTGGGCTCCTCACTGTC	0.684											OREG0024381	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	40	---	---	---	---					
TAF1B	9014	broad.mit.edu	37	2	10059757	10059763	+	Frame_Shift_Del	DEL	GCACACT	-	-	rs59159809		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr2:10059757_10059763delGCACACT	uc002qzz.2	+	14	1473_1479	c.1373_1379delGCACACT	c.(1372-1380)AGCACACTGfs	p.S458fs	TAF1B_uc002qzy.3_Frame_Shift_Del_p.S458fs|TAF1B_uc010yja.1_Frame_Shift_Del_p.S203fs|TAF1B_uc010exd.2_Frame_Shift_Del_p.S203fs	NM_005680	NP_005671	Q53T94	TAF1B_HUMAN	TBP-associated factor 1B	458_460					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|breast(1)|pancreas(1)	3	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AAACAATTTAGCACACTGGTCGAGTCA	0.285													17	84	---	---	---	---					
TCFL5	10732	broad.mit.edu	37	20	61490803	61490806	+	Frame_Shift_Del	DEL	AGAA	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr20:61490803_61490806delAGAA	uc002ydp.2	-	3	997_1000	c.904_907delTTCT	c.(904-909)TTCTGTfs	p.F302fs	TCFL5_uc002ydo.2_Frame_Shift_Del_p.F75fs|TCFL5_uc002ydq.2_Frame_Shift_Del_p.F302fs	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	302_303					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					TGCTGATAACAGAAAGAAAATGCT	0.387													74	140	---	---	---	---					
NF2	4771	broad.mit.edu	37	22	30061052	30061052	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr22:30061052delT	uc003age.3	+	9	1327	c.884delT	c.(883-885)CTGfs	p.L295fs	NF2_uc003afy.3_Frame_Shift_Del_p.L295fs|NF2_uc003afz.3_Frame_Shift_Del_p.L212fs|NF2_uc003agf.3_Frame_Shift_Del_p.L295fs|NF2_uc003agb.3_Frame_Shift_Del_p.L218fs|NF2_uc003agc.3_Frame_Shift_Del_p.L257fs|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Frame_Shift_Del_p.L295fs|NF2_uc003aga.3_Frame_Shift_Del_p.L253fs|NF2_uc003agh.3_Frame_Shift_Del_p.L254fs|NF2_uc003agi.3_Frame_Shift_Del_p.L212fs|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Frame_Shift_Del_p.L257fs|NF2_uc010gvp.2_5'UTR	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	295	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.L127_D382del(1)|p.F271_L295del(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GTTAATAAGCTGGTAAGTTGA	0.333			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				18	6	---	---	---	---					
CACNG2	10369	broad.mit.edu	37	22	37098492	37098492	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-11A-01D-2201-08									Somatic	Phase_I	Capture				Illumina GAIIx	458fa5d9-d07d-4869-8e72-52b7318d7810	f8526df7-b6fd-49f9-8a28-4803a8ad87e2	g.chr22:37098492delT	uc003aps.1	-	1	412	c.130delA	c.(130-132)AGTfs	p.S44fs	uc003apt.1_5'Flank	NM_006078	NP_006069	Q9Y698	CCG2_HUMAN	voltage-dependent calcium channel gamma-2	44					membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0						TCACTGACACTTTTGGTCTTG	0.463													120	55	---	---	---	---					
