Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SFN	2810	broad.mit.edu	37	1	27189915	27189915	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr1:27189915A>G	uc001bnc.1	+	1	283	c.212A>G	c.(211-213)GAG>GGG	p.E71G	uc010ofi.1_RNA	NM_006142	NP_006133	P31947	1433S_HUMAN	stratifin	71					DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of caspase activity|release of cytochrome c from mitochondria	cytoplasm|extracellular space|nucleus	protein domain specific binding|protein kinase C inhibitor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.1e-52)|Epithelial(14;2.31e-52)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)|GBM - Glioblastoma multiforme(114;0.0767)|Lung(427;0.215)		AAAAGCAACGAGGAGGGCTCG	0.627000													36	55					0	0	0.092188	0	0
PIAS3	10401	broad.mit.edu	37	1	145578967	145578967	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr1:145578967C>T	uc001eoc.1	+	4	636	c.545C>T	c.(544-546)GCC>GTC	p.A182V	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Missense_Mutation_p.A173V|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	182	PINIT.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CTGCCAGGAGCCAAATGTGAT	0.527000													37	63					0	0	0.104719	0	0
C1orf182	128229	broad.mit.edu	37	1	156309583	156309583	+	Splice_Site	SNP	G	C	C	rs113369857		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr1:156309583G>C	uc001foo.2	+	2	396	c.34_splice	c.e2+1	p.V12_splice	CCT3_uc001fol.1_5'Flank|CCT3_uc001fom.1_5'Flank|CCT3_uc001fon.1_5'Flank|CCT3_uc010phj.1_5'Flank|CCT3_uc010phk.1_5'Flank|CCT3_uc010phl.1_5'Flank|C1orf182_uc009wry.2_Splice_Site_p.V12_splice|C1orf182_uc001fop.3_Splice_Site_p.V12_splice	NM_144627	NP_653228	Q96A04	CA182_HUMAN	SSTK-interacting protein												0	Hepatocellular(266;0.158)					AACAGAAAAGGTGTGTGTTGG	0.413000													15	33					0	0	0.028581	0	0
LBR	3930	broad.mit.edu	37	1	225598057	225598057	+	Missense_Mutation	SNP	G	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr1:225598057G>C	uc001hoy.2	-	10	1393	c.1250C>G	c.(1249-1251)TCC>TGC	p.S417C	LBR_uc001hoz.2_Missense_Mutation_p.S417C|LBR_uc001hpa.1_Missense_Mutation_p.S417C	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	417					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		CATGGCCAAGGATGGAACAGC	0.383000													51	86					0	0	0.048971	0	0
DGKH	160851	broad.mit.edu	37	13	42742631	42742632	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr13:42742631_42742632GG>AT	uc001uyl.1	+	10	1195_1196	c.1174_1175GG>AT	c.(1174-1176)GGA>ATA	p.G392I	DGKH_uc010tfh.1_Missense_Mutation_p.G392I|DGKH_uc001uym.1_Missense_Mutation_p.G392I|DGKH_uc010tfi.1_Missense_Mutation_p.G147I|DGKH_uc010tfj.1_Missense_Mutation_p.G247I|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Missense_Mutation_p.G247I|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	392	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		TGGAGGCGATGGAAGTGTAGGT	0.322000													13	35					0	0	0.004672	0	0
ACIN1	22985	broad.mit.edu	37	14	23549776	23549776	+	Silent	SNP	T	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr14:23549776T>C	uc001wit.3	-	6	1270	c.942A>G	c.(940-942)GTA>GTG	p.V314V	ACIN1_uc001wis.3_5'UTR|ACIN1_uc010akg.2_Silent_p.V314V|ACIN1_uc010tnj.1_Silent_p.V274V	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	314	Glu-rich.				apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		CCTCTGGTTTTACTCTAGGTA	0.418000													47	101					0	0	0.048971	0	0
ADCY4	196883	broad.mit.edu	37	14	24793367	24793367	+	Silent	SNP	C	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr14:24793367C>A	uc001wov.2	-	16	1953	c.1947G>T	c.(1945-1947)CTG>CTT	p.L649L	ADCY4_uc001wow.2_Silent_p.L649L|ADCY4_uc010toh.1_Silent_p.L335L|ADCY4_uc001wox.2_Silent_p.L649L|ADCY4_uc001woy.2_Silent_p.L649L	NM_139247	NP_640340	Q8NFM4	ADCY4_HUMAN	adenylate cyclase 4	649					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding|protein binding			ovary(1)|lung(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(265;0.0192)		ACAGTGCAGGCAGCCAGTGCA	0.612000													5	64					5.9392e-07	6.53312e-07	0.021553	1	0
JKAMP	51528	broad.mit.edu	37	14	59965574	59965574	+	Silent	SNP	T	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr14:59965574T>C	uc001xei.3	+	5	1132	c.630T>C	c.(628-630)CTT>CTC	p.L210L	JKAMP_uc001xef.3_Silent_p.L196L|JKAMP_uc001xeh.3_Silent_p.L190L|JKAMP_uc001xeg.3_Silent_p.L204L|JKAMP_uc010try.1_Silent_p.L133L|JKAMP_uc001xej.3_Silent_p.L133L	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	211	Helical; (Potential).				ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						ATGCTGCACTTTACTTCTTCC	0.373000													8	15					0	0	0.080935	0	0
SBK1	388228	broad.mit.edu	37	16	28330355	28330355	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr16:28330355C>T	uc002dpd.2	+	3	1055	c.266C>T	c.(265-267)ACC>ATC	p.T89I		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	89	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						AAGAGCAAAACCAAGCTGAAG	0.532000													70	140					0	0	0.048971	0	0
PSG6	5675	broad.mit.edu	37	19	43585217	43585217	+	Nonsense_Mutation	SNP	A	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr19:43585217A>T	uc002ovi.2	-	2	339	c.246T>A	c.(244-246)TAT>TAA	p.Y82*	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Nonsense_Mutation_p.Y82*|PSG2_uc002ovq.3_Nonsense_Mutation_p.Y82*|PSG2_uc010eiq.1_Nonsense_Mutation_p.Y82*|PSG2_uc002ovs.3_Nonsense_Mutation_p.Y82*|PSG2_uc002ovt.3_Nonsense_Mutation_p.Y82*			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	82	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				CGTCTACTACATATGATGTAA	0.438000													105	234					0	0	0.048971	0	0
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr19:58385546G>T	uc002qqo.2	-	3	1484	c.1212C>A	c.(1210-1212)GAC>GAA	p.D404E	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	404					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						AATGTTTTTTGTCAGTGTGAA	0.393000													4	16					0.00909568	0.00962043	0.009096	1	0
CALCRL	10203	broad.mit.edu	37	2	188245425	188245425	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr2:188245425A>G	uc002upv.3	-	6	822	c.274T>C	c.(274-276)TTT>CTT	p.F92L	CALCRL_uc010frt.2_Missense_Mutation_p.F92L	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	92	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			AAGTCCTGAAAGTAATCAGGG	0.418000													27	26					0	0	0.045705	0	0
WDR12	55759	broad.mit.edu	37	2	203762106	203762106	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr2:203762106C>T	uc002uzl.2	-	5	1121	c.371G>A	c.(370-372)CGG>CAG	p.R124Q	WDR12_uc010ftt.2_Missense_Mutation_p.R124Q	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	124	Sufficient for nucleolar localization.|WD 1.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						GGACCAGATCCGAGAAGTCTT	0.383000													23	70					0	0	0.083992	0	0
COL4A3	1285	broad.mit.edu	37	2	228145271	228145271	+	Missense_Mutation	SNP	G	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr2:228145271G>T	uc002vom.1	+	30	2501	c.2339G>T	c.(2338-2340)GGA>GTA	p.G780V	COL4A3_uc002von.1_Missense_Mutation_p.G780V|COL4A3_uc002voo.1_Missense_Mutation_p.G780V|COL4A3_uc002vop.1_Missense_Mutation_p.G780V|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	780	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGTCTCCCTGGAACTCCAGGA	0.498000													56	110					1.73933e-33	2.03538e-33	0.048971	1	0
FBXO36	130888	broad.mit.edu	37	2	230875429	230875429	+	Silent	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr2:230875429A>G	uc002vqa.2	+	4	419	c.396A>G	c.(394-396)AAA>AAG	p.K132K	FBXO36_uc002vqb.2_Silent_p.K101K|FBXO36_uc010fxi.1_Intron|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	132	F-box.									ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		TGTCTGATAAACTGTGGGAAC	0.532000													15	41					0	0	0.028581	0	0
TGM6	343641	broad.mit.edu	37	20	2384361	2384361	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr20:2384361C>T	uc002wfy.1	+	9	1289	c.1228C>T	c.(1228-1230)CGG>TGG	p.R410W	TGM6_uc010gal.1_Missense_Mutation_p.R410W	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	410					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GGATGAGAGCCGGGAGCGTGT	0.582000													6	109					0	0	0.021553	0	0
MIR1292	100302138	broad.mit.edu	37	20	2633483	2633483	+	RNA	SNP	T	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr20:2633483T>A	hsa-mir-1292|MI0006433	+			c.61T>A			NOP56_uc010zpy.1_Intron|NOP56_uc002wgh.2_Intron|NOP56_uc002wgi.2_5'Flank|SNORD110_uc002wgj.2_5'Flank|SNORA51_uc002wgk.1_5'Flank|NOP56_uc002wgm.1_5'Flank																	0						CGGCTCCCGTTCCAGGTGCTG	0.517000													8	20					0	0	0.038147	0	0
COL6A2	1292	broad.mit.edu	37	21	47542788	47542788	+	Splice_Site	SNP	G	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr21:47542788G>A	uc002zia.1	+	21	1691	c.1609_splice	c.e21-1	p.G537_splice	COL6A2_uc002zhy.1_Splice_Site_p.G537_splice|COL6A2_uc002zhz.1_Splice_Site_p.G537_splice|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor						axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CCCTGTCACAGGGAGGCCGAG	0.547000													27	55					0	0	0.034045	0	0
PCNT	5116	broad.mit.edu	37	21	47809247	47809247	+	Missense_Mutation	SNP	A	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr21:47809247A>T	uc002zji.3	+	19	3848	c.3741A>T	c.(3739-3741)GAA>GAT	p.E1247D	PCNT_uc002zjj.2_Missense_Mutation_p.E1129D	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1247					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGAGCCCAGAAAGTGTGCGGG	0.587000													58	100					0	0	0.048971	0	0
TWF2	11344	broad.mit.edu	37	3	52269098	52269098	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr3:52269098A>G	uc003ddd.2	-	2	201	c.50T>C	c.(49-51)TTT>TCT	p.F17S	TWF2_uc010hmc.2_Missense_Mutation_p.F17S	NM_007284	NP_009215	Q6IBS0	TWF2_HUMAN	twinfilin-like protein	17	ADF-H 1.					cytoskeleton|perinuclear region of cytoplasm	actin binding|ATP binding			stomach(1)|ovary(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;2.43e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TGCCTTGGCAAAGAATTCCTT	0.572000													28	59					0	0	0.041601	0	0
LOC729375	729375	broad.mit.edu	37	3	129821650	129821650	+	RNA	SNP	G	A	A	rs56088005	by1000genomes	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr3:129821650G>A	uc003ene.2	-	2		c.266C>T			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						GGTTGCGGACGGTAAAGGCCA	0.667000													8	142					0	0	0.047766	0	0
FNDC3B	64778	broad.mit.edu	37	3	172025192	172025192	+	Silent	SNP	C	G	G	rs145255541		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr3:172025192C>G	uc003fhy.2	+	10	1273	c.1101C>G	c.(1099-1101)TCC>TCG	p.S367S	FNDC3B_uc003fhz.3_Silent_p.S367S|FNDC3B_uc003fia.2_Silent_p.S298S	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	367	Fibronectin type-III 1.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GATCCTGCTCCGAGCCTGTTA	0.502000													35	82					0	0	0.069456	0	0
ZNF876P	642280	broad.mit.edu	37	4	247501	247501	+	RNA	SNP	A	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr4:247501A>C	uc010iba.2	+	2		c.335A>C				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						TAAGGTGCAGAAAGGAGGTTA	0.318000													5	14					0	0	0.021553	0	0
TBC1D14	57533	broad.mit.edu	37	4	7026865	7026865	+	Missense_Mutation	SNP	C	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr4:7026865C>A	uc011bwg.1	+	13	1971	c.1892C>A	c.(1891-1893)ACC>AAC	p.T631N	TBC1D14_uc003gjs.3_Missense_Mutation_p.T631N|TBC1D14_uc010idh.2_Missense_Mutation_p.T351N|TBC1D14_uc011bwh.1_Missense_Mutation_p.T278N|TBC1D14_uc003gju.3_Missense_Mutation_p.T122N	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	631						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						GACATCCTGACCAAGATGGAC	0.612000													38	105					1.96642e-18	2.25319e-18	0.092188	1	0
PDLIM5	10611	broad.mit.edu	37	4	95496927	95496927	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr4:95496927C>G	uc003hti.2	+	5	603	c.452C>G	c.(451-453)ACC>AGC	p.T151S	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Intron|PDLIM5_uc011cdx.1_Intron|PDLIM5_uc003hth.2_Intron|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Intron|PDLIM5_uc011cdy.1_Missense_Mutation_p.T29S	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	151					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		TCTGCCTTCACCCCAGCCCAT	0.542000													92	227					0	0	0.048971	0	0
SPOCK3	50859	broad.mit.edu	37	4	167658622	167658622	+	Silent	SNP	A	G	G	rs34665704	byFrequency	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr4:167658622A>G	uc003iri.1	-	11	1278	c.1137T>C	c.(1135-1137)GAT>GAC	p.D379D	SPOCK3_uc011cjp.1_Silent_p.D336D|SPOCK3_uc011cjq.1_Silent_p.D388D|SPOCK3_uc011cjr.1_Silent_p.D259D|SPOCK3_uc003irj.1_Silent_p.D376D|SPOCK3_uc011cjs.1_Silent_p.D328D|SPOCK3_uc011cjt.1_Silent_p.D287D|SPOCK3_uc011cju.1_Silent_p.D272D|SPOCK3_uc011cjv.1_Silent_p.D281D	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	379	Thyroglobulin type-1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CCTTACCACAATCTGCAACAC	0.338000													8	274					0	0	0.069234	0	0
SH3RF1	57630	broad.mit.edu	37	4	170028338	170028338	+	Silent	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr4:170028338A>G	uc003isa.1	-	11	2493	c.2158T>C	c.(2158-2160)TTG>CTG	p.L720L		NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	720						Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		AGCAACTTCAACAAACCCTTT	0.468000													18	42					0	0	0.055883	0	0
HINT1	3094	broad.mit.edu	37	5	130500845	130500845	+	Silent	SNP	G	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr5:130500845G>T	uc003kve.3	-	1	190	c.54C>A	c.(52-54)ATC>ATA	p.I18I	HINT1_uc011cxd.1_RNA|HINT1_uc003kvf.3_RNA	NM_005340	NP_005331	P49773	HINT1_HUMAN	histidine triad nucleotide binding protein 1	18	HIT.				signal transduction	cytoplasm|cytoskeleton|nucleus	hydrolase activity|protein kinase C binding				0		all_cancers(142;0.0452)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		Adenosine monophosphate(DB00131)	TCTTCCCAAAGATCGTGTCGC	0.587000													34	47					1.90571e-15	2.13906e-15	0.069456	1	0
TBC1D9B	23061	broad.mit.edu	37	5	179326225	179326225	+	Silent	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr5:179326225C>T	uc003mlh.2	-	3	349	c.312G>A	c.(310-312)GAG>GAA	p.E104E	TBC1D9B_uc003mli.2_Silent_p.E104E|TBC1D9B_uc003mlj.2_Silent_p.E104E	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	104						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGATATCTTCCTCACTGTCGA	0.448000													18	35					0	0	0.033300	0	0
CDKAL1	54901	broad.mit.edu	37	6	20846322	20846322	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:20846322A>G	uc003ndc.1	+	9	829	c.655A>G	c.(655-657)ACC>GCC	p.T219A	CDKAL1_uc003ndd.1_Missense_Mutation_p.T219A|CDKAL1_uc003nde.1_Missense_Mutation_p.T149A	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	219					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			CAATGCTTGTACCTACTGCAA	0.343000													20	35					0	0	0.055883	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577000													3	35					0	0	0.004672	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333342	33333342	+	Silent	SNP	G	A	A	rs140475230	by1000genomes	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:33333342G>A	uc003shx.2	-	1	798	c.664C>T	c.(664-666)CTG>TTG	p.L222L		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GGAGGCAGCAGCTTCTCAAGA	0.562000													3	35					0	0	0.004672	0	0
TJAP1	93643	broad.mit.edu	37	6	43472653	43472653	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:43472653A>G	uc003ovd.2	+	11	1110	c.734A>G	c.(733-735)AAT>AGT	p.N245S	TJAP1_uc003ovf.2_Missense_Mutation_p.N235S|TJAP1_uc003ove.2_Missense_Mutation_p.N235S|TJAP1_uc003ovc.2_Missense_Mutation_p.N235S|TJAP1_uc010jyp.2_Missense_Mutation_p.N204S|TJAP1_uc011dvh.1_Missense_Mutation_p.N235S|TJAP1_uc003ovg.2_Missense_Mutation_p.N111S|TJAP1_uc011dvi.1_Missense_Mutation_p.N245S|TJAP1_uc011dvj.1_Missense_Mutation_p.N45S|TJAP1_uc003ovi.2_Missense_Mutation_p.N111S	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	245						Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CTACTGCTCAATTCAGCCCAG	0.637000													16	142					0	0	0.028581	0	0
THBS2	7058	broad.mit.edu	37	6	169642014	169642014	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:169642014C>G	uc003qwt.2	-	6	982	c.734G>C	c.(733-735)CGC>CCC	p.R245P		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	245					cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CGGACCCAGGCGCAGCGTCTC	0.647000													30	45					0	0	0.045705	0	0
ZNF679	168417	broad.mit.edu	37	7	63726979	63726979	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr7:63726979C>G	uc003tsx.2	+	5	1237	c.968C>G	c.(967-969)CCC>CGC	p.P323R		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	323					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GGAGAGAAACCCTACACATGT	0.398000													28	50					0	0	0.041601	0	0
RELN	5649	broad.mit.edu	37	7	103292216	103292216	+	Missense_Mutation	SNP	G	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr7:103292216G>C	uc003vca.2	-	15	1944	c.1784C>G	c.(1783-1785)ACC>AGC	p.T595S	RELN_uc010liz.2_Missense_Mutation_p.T595S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	595	BNR 1.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CCCATGGTTGGTAGAAAATTC	0.463000													39	39					0	0	0.092188	0	0
JPH1	56704	broad.mit.edu	37	8	75227665	75227665	+	Silent	SNP	G	A	A			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr8:75227665G>A	uc003yae.2	-	2	610	c.570C>T	c.(568-570)CGC>CGT	p.R190R	JPH1_uc003yaf.2_Silent_p.R190R|JPH1_uc003yag.1_Silent_p.R54R	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	190	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CGAAACCGCCGCGGGTGCCGG	0.682000													23	46					0	0	0.062417	0	0
FAM135B	51059	broad.mit.edu	37	8	139180285	139180285	+	Missense_Mutation	SNP	T	C	C			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr8:139180285T>C	uc003yuy.2	-	12	1282	c.1111A>G	c.(1111-1113)ACG>GCG	p.T371A	FAM135B_uc003yux.2_Missense_Mutation_p.T272A|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	371										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGGCTGTGCGTCTGTATCCTG	0.587000										HNSCC(54;0.14)			6	138					0	0	0.029380	0	0
CYP11B1	1584	broad.mit.edu	37	8	143956729	143956729	+	Splice_Site	SNP	C	G	G			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr8:143956729C>G	uc003yxi.2	-	7	1129	c.1122_splice	c.e7-1	p.R374_splice	CYP11B1_uc010mex.2_Missense_Mutation_p.R73T|CYP11B1_uc003yxh.2_Splice_Site_p.R90_splice|CYP11B1_uc003yxj.2_Splice_Site_p.R374_splice|CYP11B1_uc010mey.2_Splice_Site_p.R445_splice	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,						aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	AGGGTAGAGCCTGGAGGTGGG	0.602000									Familial_Hyperaldosteronism_type_I				12	18					0	0	0.024245	0	0
Unknown	0	broad.mit.edu	37	9	84676975	84676975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr9:84676975C>T	uc010mpu.1	-	1	30	c.27G>A	c.(25-27)TGG>TGA	p.W9*		NM_001164339	NP_001157811			hypothetical protein LOC404770																		TGGGTAACGCCCAGTCCCTGG	0.632000													4	47					0	0	0.021553	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071475	141071475	+	Missense_Mutation	SNP	C	G	G	rs7863719	by1000genomes	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr9:141071475C>G	uc004com.2	+	4	1139	c.878C>G	c.(877-879)GCC>GGC	p.A293G	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						AAAATGTCAGCCAGCTTCATT	0.502000													6	117					0	0	0.047766	0	0
GPR3	2827	broad.mit.edu	37	1	27720330	27720350	+	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr1:27720330_27720350delGCCTGGCTCTCAGCTGGCTCA	uc001bod.2	+	2	123_143	c.28_48delGCCTGGCTCTCAGCTGGCTCA	c.(28-48)GCCTGGCTCTCAGCTGGCTCAdel	p.AWLSAGS10del		NM_005281	NP_005272	P46089	GPR3_HUMAN	G protein-coupled receptor 3	10_16	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane				ovary(1)	1		Breast(348;1.53e-05)|Ovarian(437;0.0606)|all_lung(284;0.157)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;2.81e-26)|Colorectal(126;1.24e-08)|KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;4.45e-06)|Lung(427;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|LUSC - Lung squamous cell carcinoma(448;0.008)|READ - Rectum adenocarcinoma(331;0.0419)		CAGCCCTCTGGCCTGGCTCTCAGCTGGCTCAGGCAACGTGA	0.633													24	190	---	---	---	---					
ING4	51147	broad.mit.edu	37	12	6761549	6761549	+	Frame_Shift_Del	DEL	C	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr12:6761549delC	uc001qpw.3	-	6	577	c.536delG	c.(535-537)GGCfs	p.G179fs	ING4_uc001qpv.3_Frame_Shift_Del_p.G178fs|ING4_uc001qpy.3_Frame_Shift_Del_p.G175fs|ING4_uc001qpx.3_Frame_Shift_Del_p.G176fs|ING4_uc009zes.2_Intron|ING4_uc009zet.2_Frame_Shift_Del_p.G155fs|ING4_uc009zeu.2_Intron|ING4_uc009zev.2_RNA	NM_001127582	NP_001121054	Q9UNL4	ING4_HUMAN	inhibitor of growth family, member 4 isoform 9	179					apoptosis|cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA replication|histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation|negative regulation of cell proliferation|negative regulation of growth|negative regulation of transcription, DNA-dependent|positive regulation of apoptosis	histone acetyltransferase complex	protein binding|transcription coactivator activity|zinc ion binding			central_nervous_system(3)|ovary(1)	4						GTGGACACTGCCAAAGGTCAC	0.512													49	121	---	---	---	---					
C15orf21	283651	broad.mit.edu	37	15	45848231	45848231	+	RNA	DEL	T	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr15:45848231delT	uc010beg.1	+	6		c.1226delT			C15orf21_uc010beh.1_RNA|C15orf21_uc010bei.1_RNA|C15orf21_uc010bej.1_RNA|C15orf21_uc001zvm.1_RNA|C15orf21_uc001zvn.1_RNA					Homo sapiens cDNA FLJ39426 fis, clone PROST2000505.												0		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;3.03e-17)|GBM - Glioblastoma multiforme(94;7.36e-07)		TTTGTTTAGCTTTTTTTTTTT	0.323			T	ETV1	prostate								5	10	---	---	---	---					
KIAA1199	57214	broad.mit.edu	37	15	81221510	81221511	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr15:81221510_81221511delAG	uc002bfw.1	+	20	2867_2868	c.2607_2608delAG	c.(2605-2610)ATAGGCfs	p.I869fs	KIAA1199_uc010unn.1_Frame_Shift_Del_p.I869fs	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	869_870										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCCTCCCTATAGGCCAGTAGGT	0.510													54	88	---	---	---	---					
ZNF347	84671	broad.mit.edu	37	19	53643573	53643575	+	In_Frame_Del	DEL	TGA	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr19:53643573_53643575delTGA	uc002qbb.1	-	5	2575_2577	c.2506_2508delTCA	c.(2506-2508)TCAdel	p.S836del	ZNF347_uc010eql.1_In_Frame_Del_p.S837del|ZNF347_uc002qbc.1_In_Frame_Del_p.S837del	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	836					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		ATGAATTCTGTGATGGCTTGCAA	0.394													46	125	---	---	---	---					
TTLL12	23170	broad.mit.edu	37	22	43579135	43579149	+	In_Frame_Del	DEL	CACTTCCCCAGCGTC	-	-	rs142175052		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr22:43579135_43579149delCACTTCCCCAGCGTC	uc003bdq.2	-	2	216_230	c.184_198delGACGCTGGGGAAGTG	c.(184-198)GACGCTGGGGAAGTGdel	p.DAGEV62del	TTLL12_uc003bdr.1_In_Frame_Del_p.DAGEV62del	NM_015140	NP_055955	Q14166	TTL12_HUMAN	tubulin tyrosine ligase-like family, member 12	62_66					protein modification process		tubulin-tyrosine ligase activity			central_nervous_system(1)	1		Ovarian(80;0.221)|Glioma(61;0.222)				TGATCCCAAACACTTCCCCAGCGTCGAAAACCTGG	0.637													16	179	---	---	---	---					
ACY1	95	broad.mit.edu	37	3	52020519	52020519	+	Frame_Shift_Del	DEL	G	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr3:52020519delG	uc003dcp.2	+	7	586	c.525delG	c.(523-525)GAGfs	p.E175fs	ACY1_uc011bea.1_Frame_Shift_Del_p.E265fs|ACY1_uc011beb.1_Frame_Shift_Del_p.E175fs|ACY1_uc003dcq.2_Frame_Shift_Del_p.E175fs	NM_000666	NP_000657	Q03154	ACY1_HUMAN	aminoacylase 1	175		Zinc 1 (By similarity).			cellular amino acid metabolic process|proteolysis	cytosol	aminoacylase activity|metal ion binding|metallopeptidase activity			breast(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000534)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	L-Aspartic Acid(DB00128)	CCCTGGATGAGGGTGAGCAGG	0.612													37	51	---	---	---	---					
GIN1	54826	broad.mit.edu	37	5	102444326	102444335	+	Frame_Shift_Del	DEL	AGTGTAGTTG	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr5:102444326_102444335delAGTGTAGTTG	uc003koa.1	-	2	159_168	c.77_86delCAACTACACT	c.(76-87)TCAACTACACTGfs	p.S26fs	GIN1_uc003kob.1_5'UTR|GIN1_uc003koc.1_Frame_Shift_Del_p.S26fs	NM_017676	NP_060146	Q9NXP7	GIN1_HUMAN	zinc finger, H2C2 domain containing	26_29					DNA integration		DNA binding			ovary(1)|skin(1)	2		all_cancers(142;3.23e-07)|all_epithelial(76;3.64e-10)|Prostate(80;0.00914)|Ovarian(225;0.0139)|Lung NSC(167;0.0212)|Colorectal(57;0.0249)|all_lung(232;0.0283)		Epithelial(69;3.57e-14)|COAD - Colon adenocarcinoma(37;0.00794)		CTCACTTGGCAGTGTAGTTGAATGATATTC	0.343													16	56	---	---	---	---					
ZDHHC14	79683	broad.mit.edu	37	6	158093775	158093785	+	Frame_Shift_Del	DEL	TTCAGAGCACC	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr6:158093775_158093785delTTCAGAGCACC	uc003qqt.2	+	9	1585_1595	c.1088_1098delTTCAGAGCACC	c.(1087-1098)ATTCAGAGCACCfs	p.I363fs	ZDHHC14_uc003qqs.2_Intron|ZDHHC14_uc010kjn.2_Frame_Shift_Del_p.I18fs	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	363_366						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		GACCAGTGCATTCAGAGCACCAAATTCGTTT	0.493													11	61	---	---	---	---					
PURB	5814	broad.mit.edu	37	7	44924131	44924131	+	Frame_Shift_Del	DEL	A	-	-			TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	g.chr7:44924131delA	uc003tme.2	-	1	830	c.817delT	c.(817-819)TGCfs	p.C273fs		NM_033224	NP_150093	Q96QR8	PURB_HUMAN	purine-rich element binding protein B	273					regulation of myeloid cell differentiation	DNA replication factor A complex	mRNA binding|single-stranded DNA binding|transcription factor binding				0						GCATACCGGCAAAAGGCGCCT	0.582													7	432	---	---	---	---					
