Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DDI2	84301	broad.mit.edu	37	1	15957021	15957021	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:15957021C>T	uc001awx.1	+	3	566	c.470C>T	c.(469-471)CCA>CTA	p.P157L	DDI2_uc001aww.2_Missense_Mutation_p.P157L|DDI2_uc009voj.1_5'UTR	NM_032341	NP_115717	Q5TDH0	DDI2_HUMAN	DNA-damage inducible protein 2	157					proteolysis		aspartic-type endopeptidase activity				0		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00327)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.03e-07)|COAD - Colon adenocarcinoma(227;4.48e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00773)|READ - Rectum adenocarcinoma(331;0.0656)		GAACGCAATCCACCCCTGGCA	0.502													30	50					0	0	0.009535	0	0
GALE	2582	broad.mit.edu	37	1	24124297	24124297	+	Missense_Mutation	SNP	G	T	T	rs141583863		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:24124297G>T	uc009vqo.1	-	5	626	c.416C>A	c.(415-417)CCC>CAC	p.P139H	GALE_uc001bhv.1_Missense_Mutation_p.P139H|GALE_uc001bhw.1_Missense_Mutation_p.P139H|GALE_uc001bhx.1_Missense_Mutation_p.P139H|GALE_uc009vqp.1_Missense_Mutation_p.P139H|GALE_uc001bhy.1_Missense_Mutation_p.P139H|GALE_uc001bhz.1_Missense_Mutation_p.P65H|GALE_uc001bia.2_5'Flank	NM_001127621	NP_001121093	Q14376	GALE_HUMAN	UDP-galactose-4-epimerase	139					galactose catabolic process	cytosol	coenzyme binding|protein homodimerization activity|UDP-glucose 4-epimerase activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		CAGGTACTGGGGGTTCCCGTA	0.587													25	25					3.73808e-20	4.5391e-20	0.005443	1	0
NUDC	10726	broad.mit.edu	37	1	27250638	27250638	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:27250638A>G	uc001bng.1	+	2	256	c.140A>G	c.(139-141)GAA>GGA	p.E47G	NUDC_uc001bnh.1_Missense_Mutation_p.E47G|NUDC_uc009vsq.1_Intron	NM_006600	NP_006591	Q9Y266	NUDC_HUMAN	nuclear distribution gene C homolog	47					cell proliferation|cytokinesis|mitotic prometaphase|multicellular organismal development	cytosol|microtubule|nucleoplasm	protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;6.1e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.87e-29)|Colorectal(126;5.74e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000281)|STAD - Stomach adenocarcinoma(196;0.000604)|KIRC - Kidney renal clear cell carcinoma(1967;0.000739)|READ - Rectum adenocarcinoma(331;0.0421)		ATTGGAGGAGAAGAAGGGATG	0.458													26	36					0	0	0.006320	0	0
CTH	1491	broad.mit.edu	37	1	70877247	70877247	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:70877247G>C	uc001dfd.2	+	1	293	c.149G>C	c.(148-150)GGG>GCG	p.G50A	CTH_uc009wbl.1_RNA|CTH_uc001dfe.2_Missense_Mutation_p.G50A|CTH_uc010oqq.1_Missense_Mutation_p.G50A	NM_001902	NP_001893	P32929	CGL_HUMAN	cystathionase isoform 1	50					cysteine biosynthetic process|hydrogen sulfide biosynthetic process|protein homotetramerization|protein-pyridoxal-5-phosphate linkage via peptidyl-N6-pyridoxal phosphate-L-lysine	cytoplasm|nucleus	cystathionine gamma-lyase activity|L-cysteine desulfhydrase activity|pyridoxal phosphate binding			lung(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	TTCAAGCAAGGGGCGCCTGGC	0.572													24	46					0	0	0.004656	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94337674	94337674	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:94337674C>A	uc001dqf.2	-	5	2059	c.2021G>T	c.(2020-2022)AGA>ATA	p.R674I	DNTTIP2_uc010otm.1_RNA	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	674					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		CTTGTAAAATCTTTTCGGGTC	0.408													112	144					3.44819e-71	4.28921e-71	0.014410	1	0
SETDB1	9869	broad.mit.edu	37	1	150936790	150936790	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:150936790G>A	uc001evu.2	+	22	4016	c.3826G>A	c.(3826-3828)GAG>AAG	p.E1276K	SETDB1_uc001evv.2_Missense_Mutation_p.E1275K	NM_001145415	NP_001138887	Q15047	SETB1_HUMAN	SET domain, bifurcated 1 isoform 1	1276	Post-SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|Golgi apparatus|nucleus|plasma membrane	DNA binding|histone-lysine N-methyltransferase activity|protein binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|BRCA - Breast invasive adenocarcinoma(12;0.0152)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGAAGGCAAGGAGCTACTCTG	0.507													14	37					0	0	0.003163	0	0
SLC27A3	11000	broad.mit.edu	37	1	153752431	153752431	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:153752431A>T	uc001fcz.2	+	10	2211	c.2146A>T	c.(2146-2148)ACA>TCA	p.T716S	SLC27A3_uc009won.2_RNA	NM_024330	NP_077306	Q5K4L6	S27A3_HUMAN	solute carrier family 27 member 3	716					fatty acid metabolic process	integral to membrane|mitochondrial membrane	ligase activity|nucleotide binding			ovary(1)	1	all_lung(78;6.47e-32)|Lung NSC(65;2.52e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			CCTGCCCCTCACAACTGCCCG	0.597													16	20					0	0	0.004007	0	0
DDX59	83479	broad.mit.edu	37	1	200635600	200635600	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:200635600G>C	uc009wzk.2	-	2	512	c.269C>G	c.(268-270)CCC>CGC	p.P90R	DDX59_uc010ppl.1_Missense_Mutation_p.P90R	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	90						intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						TGACTTAACGGGCTCTTCAGA	0.522													3	41					0	0	0.004672	0	0
BTG2	7832	broad.mit.edu	37	1	203274779	203274779	+	Silent	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr1:203274779C>T	uc001gzq.2	+	1	116	c.45C>T	c.(43-45)GCC>GCT	p.A15A	FMOD_uc010pqi.1_Intron|uc009xao.1_5'Flank|uc001gzp.1_5'Flank|BTG2_uc009xap.1_RNA	NM_006763	NP_006754	P78543	BTG2_HUMAN	B-cell translocation gene 2	15					DNA repair|neuron projection development|positive regulation of nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(1)|kidney(1)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.203)			AGATCGCCGCCGCCGTGGGCT	0.682													3	8					0	0	0.004672	0	0
SIGIRR	59307	broad.mit.edu	37	11	406878	406878	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:406878G>T	uc001lpd.2	-	8	1174	c.844C>A	c.(844-846)CTG>ATG	p.L282M	SIGIRR_uc001lpf.2_Missense_Mutation_p.L282M|SIGIRR_uc001lpe.1_Missense_Mutation_p.L282M|SIGIRR_uc001lpg.2_Missense_Mutation_p.L282M	NM_001135054	NP_001128526	Q6IA17	SIGIR_HUMAN	single Ig IL-1R-related molecule	282	Cytoplasmic (Potential).|TIR.				acute-phase response|innate immune response|negative regulation of chemokine biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of lipopolysaccharide-mediated signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity	integral to membrane	protein binding|transmembrane receptor activity				0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AAGGTCACCAGGTGGCGGTGC	0.736													5	5					1.23904e-05	1.38881e-05	0.014758	1	0
MUC2	4583	broad.mit.edu	37	11	1075662	1075662	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:1075662C>G	uc001lsx.1	+	2	115	c.88C>G	c.(88-90)CGA>GGA	p.R30G		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	30						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGGCAGAACCCGAAACCACGG	0.632													8	22					0	0	0.008291	0	0
SLC5A12	159963	broad.mit.edu	37	11	26725402	26725402	+	Silent	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:26725402A>G	uc001mra.2	-	5	931	c.618T>C	c.(616-618)CAT>CAC	p.H206H	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.H206H	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	206	Extracellular (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						ATCCCCCAGCATGAGTTGATC	0.388													78	113					0	0	0.014410	0	0
TCP11L1	55346	broad.mit.edu	37	11	33083137	33083137	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:33083137G>C	uc001mud.2	+	7	1237	c.837G>C	c.(835-837)AAG>AAC	p.K279N	TCP11L1_uc009yju.2_Missense_Mutation_p.K94N|TCP11L1_uc010rei.1_Missense_Mutation_p.K279N|TCP11L1_uc001mue.2_Missense_Mutation_p.K279N|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	279											0						TGACTCAGAAGTATAAACACG	0.527													21	27					0	0	0.010504	0	0
NDUFS3	4722	broad.mit.edu	37	11	47605943	47605943	+	Silent	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:47605943G>A	uc001nga.2	+	7	787	c.705G>A	c.(703-705)CTG>CTA	p.L235L	NDUFS3_uc001nft.3_Silent_p.L214L|FAM180B_uc001ngb.1_5'Flank	NM_004551	NP_004542	O75489	NDUS3_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 3	235					induction of apoptosis|mitochondrial electron transport, NADH to ubiquinone|negative regulation of cell growth|reactive oxygen species metabolic process|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	AATTTGACCTGAACAGCCCCT	0.557													75	99					0	0	0.014410	0	0
UNC93B1	81622	broad.mit.edu	37	11	67759236	67759236	+	Silent	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:67759236G>C	uc001omw.1	-	12	1655	c.1575C>G	c.(1573-1575)CGC>CGG	p.R525R		NM_030930	NP_112192	Q9H1C4	UN93B_HUMAN	unc-93 homolog B1	525					innate immune response|intracellular protein transport|response to virus|toll-like receptor 3 signaling pathway|toll-like receptor 7 signaling pathway|toll-like receptor 9 signaling pathway	early phagosome|endoplasmic reticulum membrane|endosome|integral to membrane|lysosome					0						TGCGGGGCTGGCGCGGGGCCA	0.721													2	7					0	0	0.004672	0	0
ATP5L	10632	broad.mit.edu	37	11	118272388	118272388	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:118272388A>G	uc001psx.2	+	1	285	c.8A>G	c.(7-9)CAA>CGA	p.Q3R		NM_006476	NP_006467	O75964	ATP5L_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	3					ATP catabolic process|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity|protein binding				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)		ACCATGGCCCAATTTGTCCGT	0.667													16	21					0	0	0.006122	0	0
TMEM45B	120224	broad.mit.edu	37	11	129724698	129724698	+	Silent	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:129724698A>G	uc001qfe.1	+	3	433	c.372A>G	c.(370-372)GCA>GCG	p.A124A	TMEM45B_uc001qff.1_Silent_p.A124A	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	124	Helical; (Potential).					integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		TGGCTGTGGCAGTATTCATGG	0.453													34	54					0	0	0.017118	0	0
IFFO1	25900	broad.mit.edu	37	12	6649694	6649694	+	Silent	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr12:6649694A>G	uc001qpd.1	-	9	1669	c.1635T>C	c.(1633-1635)GCT>GCC	p.A545A	IFFO1_uc001qoy.2_RNA|IFFO1_uc001qpa.1_Silent_p.A185A|IFFO1_uc001qpb.1_Silent_p.A222A|IFFO1_uc001qpe.1_RNA|IFFO1_uc010sfe.1_Silent_p.A557A|IFFO1_uc001qpf.1_Silent_p.A548A|IFFO1_uc001qoz.1_Silent_p.A186A|IFFO1_uc001qpc.1_Silent_p.A549A|IFFO1_uc001qpg.2_Missense_Mutation_p.L185P	NM_080730	NP_542768	Q0D2I5	IFFO1_HUMAN	intermediate filament family orphan isoform 2	545						intermediate filament					0						CGGAGTCCTCAGCCTCGCTTG	0.617													63	6					0	0	0.014410	0	0
ARID2	196528	broad.mit.edu	37	12	46285793	46285793	+	Splice_Site	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr12:46285793G>A	uc001ros.1	+	18	5062	c.5062_splice	c.e18-1	p.D1688_splice	ARID2_uc001ror.2_Splice_Site_p.D1688_splice|ARID2_uc009zkg.1_Splice_Site_p.D1144_splice|ARID2_uc009zkh.1_Splice_Site_p.D1315_splice|ARID2_uc001rou.1_Splice_Site_p.D1022_splice	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TCCTCAAAAAGGATAAGCACT	0.388													52	4					0	0	0.014410	0	0
ESPL1	9700	broad.mit.edu	37	12	53685605	53685605	+	Silent	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr12:53685605A>G	uc001sck.2	+	26	5743	c.5652A>G	c.(5650-5652)ACA>ACG	p.T1884T	ESPL1_uc001scj.2_Silent_p.T1559T	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1884					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						AGGGCCTGACAGTACCAAGCA	0.587													107	12					0	0	0.014410	0	0
ALG5	29880	broad.mit.edu	37	13	37539814	37539814	+	Nonsense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr13:37539814C>T	uc001uvy.2	-	8	738	c.671G>A	c.(670-672)TGG>TAG	p.W224*	ALG5_uc010teq.1_Nonsense_Mutation_p.W194*|ALG5_uc010ter.1_RNA	NM_013338	NP_037470	Q9Y673	ALG5_HUMAN	dolichyl-phosphate beta-glucosyltransferase	224	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate beta-glucosyltransferase activity|oligosaccharyl transferase activity				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)		all cancers(112;5.79e-07)|Epithelial(112;1.81e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00785)|BRCA - Breast invasive adenocarcinoma(63;0.0127)|GBM - Glioblastoma multiforme(144;0.0472)		ACAAAGGAACCACACCAGAAA	0.408													4	69					0	0	0.009096	0	0
RAB2B	84932	broad.mit.edu	37	14	21931921	21931921	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr14:21931921A>G	uc010tlt.1	-	6	469	c.368T>C	c.(367-369)CTA>CCA	p.L123P	RAB2B_uc010tls.1_Missense_Mutation_p.L77P|RAB2B_uc001wax.2_Missense_Mutation_p.L58P|RAB2B_uc010ain.2_Missense_Mutation_p.L14P	NM_032846	NP_116235	Q8WUD1	RAB2B_HUMAN	RAB2B protein isoform 1	123					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane|plasma membrane	GTP binding			ovary(1)	1	all_cancers(95;0.000858)		Epithelial(56;1.53e-06)|all cancers(55;1.44e-05)	GBM - Glioblastoma multiforme(265;0.00391)		GCGGGACTCTAGGTCACTGCA	0.408													31	45					0	0	0.012213	0	0
PCK2	5106	broad.mit.edu	37	14	24568928	24568928	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr14:24568928A>C	uc001wlt.2	+	6	1146	c.1014A>C	c.(1012-1014)GAA>GAC	p.E338D	NRL_uc001wlq.2_Intron|PCK2_uc001wlr.1_Missense_Mutation_p.E350D|PCK2_uc001wls.2_Missense_Mutation_p.E338D|PCK2_uc010tnw.1_Missense_Mutation_p.E204D|PCK2_uc010ald.2_Missense_Mutation_p.E190D|PCK2_uc010ale.2_3'UTR|PCK2_uc010tnx.1_Missense_Mutation_p.E204D|PCK2_uc001wlu.3_Missense_Mutation_p.E204D	NM_004563	NP_004554	Q16822	PCKGM_HUMAN	mitochondrial phosphoenolpyruvate carboxykinase	338					gluconeogenesis	mitochondrial matrix	GTP binding|metal ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0184)		TTGACAGTGAAGGTGAGGGAC	0.517													27	74					0	0	0.005443	0	0
NID2	22795	broad.mit.edu	37	14	52494036	52494036	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr14:52494036C>T	uc001wzo.2	-	12	2791	c.2557G>A	c.(2557-2559)GAG>AAG	p.E853K	NID2_uc010tqs.1_Intron|NID2_uc010tqt.1_Missense_Mutation_p.E853K|NID2_uc001wzp.2_Missense_Mutation_p.E853K	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	853	EGF-like 4.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CTGCCATCCTCACAGGGGTTG	0.517													12	16					0	0	0.020292	0	0
PPM1A	5494	broad.mit.edu	37	14	60750192	60750192	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr14:60750192A>T	uc010apn.2	+	3	1173	c.771A>T	c.(769-771)AGA>AGT	p.R257S	PPM1A_uc001xew.3_Missense_Mutation_p.R330S|PPM1A_uc001xex.3_Missense_Mutation_p.R257S|PPM1A_uc001xey.3_Missense_Mutation_p.R257S	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	257					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		TAAGATCCAGACTTGAAGTCA	0.348													78	111					0	0	0.014410	0	0
UBR1	197131	broad.mit.edu	37	15	43299483	43299483	+	Splice_Site	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr15:43299483C>A	uc001zqq.2	-	30	3276	c.3210_splice	c.e30-1	p.S1070_splice		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin						cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TGCTGGGGTGCTACCAAAAGA	0.403													7	10					0.00307968	0.0033066	0.003080	1	0
PARP6	56965	broad.mit.edu	37	15	72556908	72556908	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr15:72556908A>G	uc002auc.2	-	7	842	c.383T>C	c.(382-384)CTT>CCT	p.L128P	PARP6_uc002aua.2_5'UTR|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.L128P	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	128							NAD+ ADP-ribosyltransferase activity				0						TTTCAACTGAAGACCCAGCCC	0.428													4	90					0	0	0.014758	0	0
IDH2	3418	broad.mit.edu	37	15	90634783	90634783	+	Splice_Site	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr15:90634783A>G	uc002box.2	-	2	293	c.207_splice	c.e2+1	p.K69_splice	IDH2_uc010uqb.1_Splice_Site_p.K17_splice|IDH2_uc010uqc.1_Intron|IDH2_uc010bnu.2_Splice_Site_p.K69_splice	NM_002168	NP_002159	P48735	IDHP_HUMAN	isocitrate dehydrogenase 2 (NADP+),						2-oxoglutarate metabolic process|glyoxylate cycle|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding			haematopoietic_and_lymphoid_tissue(621)|central_nervous_system(80)|bone(7)|skin(3)	711	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.106)			AGGGGGCACTACCTTCTCCTT	0.577			M		GBM								8	72					0	0	0.008291	0	0
RAB40C	57799	broad.mit.edu	37	16	677608	677608	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr16:677608T>C	uc002chr.2	+	6	948	c.832T>C	c.(832-834)TGC>CGC	p.C278R	RAB40C_uc002chq.2_Missense_Mutation_p.C259R|WFIKKN1_uc002chs.1_5'Flank	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	278					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GCGGAGTAACTGCAAGATCTC	0.697													49	38					0	0	0.014410	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926750	22926750	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr16:22926750G>A	uc002dli.2	+	2	1043	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	324	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		CTCCTGCCTCGATGCTTGGGC	0.403													15	269					0	0	0.003163	0	0
PRSS8	5652	broad.mit.edu	37	16	31144179	31144179	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr16:31144179A>G	uc002ebc.3	-	4	694	c.362T>C	c.(361-363)ATC>ACC	p.I121T	PRSS8_uc010vfe.1_Missense_Mutation_p.I67T	NM_002773	NP_002764	Q16651	PRSS8_HUMAN	prostasin preproprotein	121	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity				0						GGGGTGGGGGATGATGTCCTT	0.622													85	216					0	0	0.014410	0	0
ABCC11	85320	broad.mit.edu	37	16	48249161	48249161	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr16:48249161A>G	uc002eff.1	-	7	1396	c.1046T>C	c.(1045-1047)ATT>ACT	p.I349T	ABCC11_uc002efg.1_Missense_Mutation_p.I349T|ABCC11_uc002efh.1_Missense_Mutation_p.I349T|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	349	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AATCAGCTTAATGCAAGTGAG	0.453									Cerumen_Type				39	85					0	0	0.023175	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	8					0	0	0.004672	0	0
INPP5K	51763	broad.mit.edu	37	17	1400005	1400005	+	Silent	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr17:1400005G>C	uc002fsr.2	-	9	1445	c.1056C>G	c.(1054-1056)ACC>ACG	p.T352T	INPP5K_uc002fss.2_Silent_p.T276T|INPP5K_uc002fsq.2_Silent_p.T276T|INPP5K_uc010cjr.2_Silent_p.T276T|INPP5K_uc010vql.1_Silent_p.T260T|INPP5K_uc010vqm.1_Silent_p.T256T	NM_016532	NP_057616	Q9BT40	INP5K_HUMAN	inositol polyphosphate-5-phosphatase K isoform	352	Required for ruffle localization.				actin cytoskeleton organization	cytosol|endoplasmic reticulum|membrane fraction|neuron projection|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol bisphosphate phosphatase activity|inositol bisphosphate phosphatase activity|inositol trisphosphate phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|lipid phosphatase activity|protein binding				0						GGAAGTCCGAGGTTGAAGAGT	0.567													53	42					0	0	0.014410	0	0
ACLY	47	broad.mit.edu	37	17	40048661	40048661	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr17:40048661C>A	uc002hyg.2	-	16	1804	c.1641G>T	c.(1639-1641)GAG>GAT	p.E547D	ACLY_uc002hyh.2_Missense_Mutation_p.E537D|ACLY_uc002hyi.2_Missense_Mutation_p.E601D|ACLY_uc010wfx.1_Missense_Mutation_p.E591D|ACLY_uc010wfy.1_Missense_Mutation_p.E276D	NM_001096	NP_001087	P53396	ACLY_HUMAN	ATP citrate lyase isoform 1	547					ATP catabolic process|cellular carbohydrate metabolic process|citrate metabolic process|coenzyme A metabolic process|energy reserve metabolic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	citrate lyase complex|cytosol|nucleus	ATP binding|ATP citrate synthase activity|citrate (pro-3S)-lyase activity|metal ion binding|protein binding|succinate-CoA ligase (ADP-forming) activity			ovary(2)|central_nervous_system(1)	3		Breast(137;0.000143)				GGATCAGGATCTCTTTGTGCC	0.493													54	91					2.53126e-37	3.11071e-37	0.014410	1	0
HDAC5	10014	broad.mit.edu	37	17	42158172	42158172	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr17:42158172C>A	uc002ifd.1	-	21	2897	c.2686G>T	c.(2686-2688)GAC>TAC	p.D896Y	HDAC5_uc002ife.1_Missense_Mutation_p.D896Y|HDAC5_uc002iff.1_Missense_Mutation_p.D897Y|HDAC5_uc010czp.1_Missense_Mutation_p.D811Y	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	896	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		TTCCCGTTGTCATAGCGATGC	0.562													33	69					1.60099e-16	1.89884e-16	0.021022	1	0
AFG3L2	10939	broad.mit.edu	37	18	12358734	12358734	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr18:12358734T>C	uc002kqz.1	-	8	1074	c.961A>G	c.(961-963)ATG>GTG	p.M321V		NM_006796	NP_006787	Q9Y4W6	AFG32_HUMAN	AFG3 ATPase family gene 3-like 2	321					cell death|protein catabolic process|proteolysis	integral to membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0					Adenosine triphosphate(DB00171)	ACAAATTCCATGATCTCTAGC	0.383													25	36					0	0	0.018920	0	0
APC2	10297	broad.mit.edu	37	19	1468067	1468067	+	Silent	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:1468067C>T	uc002lsr.1	+	15	4975	c.4767C>T	c.(4765-4767)CCC>CCT	p.P1589P	APC2_uc002lss.1_Silent_p.P1171P|APC2_uc002lst.1_Silent_p.P1589P|APC2_uc002lsu.1_Silent_p.P1588P|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	1589	Pro-rich.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGCGAGCCCGAGCCCTCGG	0.766													7	10					0	0	0.004482	0	0
NACC1	112939	broad.mit.edu	37	19	13249116	13249116	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:13249116A>G	uc002mwm.2	+	6	1648	c.1480A>G	c.(1480-1482)AGT>GGT	p.S494G		NM_052876	NP_443108	Q96RE7	NACC1_HUMAN	transcriptional repressor NAC1	494					negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|protein homooligomerization|transcription, DNA-dependent	cytoplasm|nuclear body					0						CACCTTCATCAGTGAAACGGG	0.642													56	87					0	0	0.014410	0	0
SF4	57794	broad.mit.edu	37	19	19420931	19420931	+	Silent	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:19420931C>T	uc002nmh.2	-	3	287	c.285G>A	c.(283-285)AAG>AAA	p.K95K	SF4_uc002nmi.2_5'UTR|SF4_uc002nmj.2_Intron|SF4_uc010xqr.1_RNA|SF4_uc010xqs.1_RNA	NM_172231	NP_757386	Q8IWZ8	SUGP1_HUMAN	splicing factor 4	95					nuclear mRNA splicing, via spliceosome	nucleoplasm|spliceosomal complex	RNA binding				0						CCTTCTGCAACTTCAGAAACT	0.512													33	38					0	0	0.013726	0	0
TMEM149	79713	broad.mit.edu	37	19	36232080	36232080	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:36232080A>G	uc002obc.2	-	2	103	c.2T>C	c.(1-3)ATG>ACG	p.M1T	TMEM149_uc002obb.2_Missense_Mutation_p.M1T|TMEM149_uc002obd.3_Missense_Mutation_p.M1T|TMEM149_uc010xsy.1_RNA|TMEM149_uc010eej.2_Missense_Mutation_p.M81T	NM_024660	NP_078936	Q9H665	IGFR1_HUMAN	transmembrane protein 149 precursor	1						integral to membrane|plasma membrane	protein binding|receptor activity				0	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TCCAGGCCCCATCTGGGGGGC	0.632													4	8					0	0	0.021553	0	0
ADCK4	79934	broad.mit.edu	37	19	41220537	41220537	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:41220537T>C	uc002oor.2	-	2	303	c.1A>G	c.(1-3)ATG>GTG	p.M1V	ADCK4_uc002ooq.1_Missense_Mutation_p.M1V|ADCK4_uc002oos.2_Missense_Mutation_p.M1V|ITPKC_uc002oot.2_5'Flank	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	1						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			TTCAGCCACATTGCCTGGAGG	0.647													19	26					0	0	0.007413	0	0
ZNF814	730051	broad.mit.edu	37	19	58385762	58385762	+	Silent	SNP	C	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr19:58385762C>G	uc002qqo.2	-	3	1268	c.996G>C	c.(994-996)TCG>TCC	p.S332S	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	332	C2H2-type 5.				regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						ATTTGCTAAACGATTTCCCAC	0.358													2	6					0	0	0.004672	0	0
RANBP2	5903	broad.mit.edu	37	2	109383218	109383218	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr2:109383218A>C	uc002tem.3	+	20	6349	c.6223A>C	c.(6223-6225)ATG>CTG	p.M2075L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2075	RanBD1 2.				carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AAGAATGCTGATGCGAAGAGA	0.408													220	214					0	0	0.014410	0	0
RIF1	55183	broad.mit.edu	37	2	152319615	152319615	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr2:152319615C>A	uc002txm.2	+	30	3711	c.3581C>A	c.(3580-3582)TCT>TAT	p.S1194Y	RIF1_uc002txl.2_Missense_Mutation_p.S1194Y|RIF1_uc002txn.2_Missense_Mutation_p.S1194Y|RIF1_uc002txo.2_Missense_Mutation_p.S1194Y|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	1194					cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		ACAGAAAATTCTTTCGTTGTC	0.368													21	75					1.28384e-07	1.47137e-07	0.012319	1	0
ZNF804A	91752	broad.mit.edu	37	2	185802128	185802128	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr2:185802128G>C	uc002uph.2	+	4	2599	c.2005G>C	c.(2005-2007)GAC>CAC	p.D669H		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	669						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATCCTTAAGTGACAATGAAGA	0.323													43	61					0	0	0.006999	0	0
ANKRD44	91526	broad.mit.edu	37	2	198001337	198001337	+	Silent	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr2:198001337C>A	uc002uuc.2	-	4	407	c.240G>T	c.(238-240)CGG>CGT	p.R80R	ANKRD44_uc002uua.1_Silent_p.R55R|ANKRD44_uc002uub.2_Silent_p.R80R|ANKRD44_uc010zgw.1_Silent_p.R8R|ANKRD44_uc002uud.1_Silent_p.R80R	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	80	ANK 3.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			AAGCAACAGCCCGGTGCAGTG	0.443													26	27					2.48779e-11	2.91673e-11	0.005443	1	0
RBBP9	10741	broad.mit.edu	37	20	18471080	18471080	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr20:18471080G>A	uc002wqy.2	-	4	369	c.293C>T	c.(292-294)GCG>GTG	p.A98V		NM_006606	NP_006597	O75884	RBBP9_HUMAN	retinoblastoma binding protein 9	98						cytoplasm|nucleus	hydrolase activity			haematopoietic_and_lymphoid_tissue(1)	1						TGATGTGTACGCAGACACTAA	0.408													31	55					0	0	0.021022	0	0
ENTPD6	955	broad.mit.edu	37	20	25201971	25201971	+	Splice_Site	SNP	T	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr20:25201971T>A	uc002wuj.2	+	11	1225	c.1045_splice	c.e11+2	p.A349_splice	ENTPD6_uc010zsy.1_Silent_p.G349G|ENTPD6_uc010gdj.1_Silent_p.G321G|ENTPD6_uc010zsz.1_Splice_Site_p.A131_splice|ENTPD6_uc002wum.2_Splice_Site_p.A332_splice|ENTPD6_uc010zta.1_Splice_Site_p.A349_splice|ENTPD6_uc002wun.2_Intron|ENTPD6_uc002wuk.2_Splice_Site_p.A348_splice|ENTPD6_uc002wul.2_Splice_Site_p.A348_splice|ENTPD6_uc010ztb.1_Splice_Site_p.A321_splice|ENTPD6_uc010ztc.1_Splice_Site_p.A321_splice|ENTPD6_uc002wuo.2_Splice_Site_p.A101_splice|ENTPD6_uc010ztd.1_Intron|ENTPD6_uc010gdk.1_5'Flank|ENTPD6_uc010gdl.1_5'Flank	NM_001247	NP_001238	O75354	ENTP6_HUMAN	ectonucleoside triphosphate diphosphohydrolase 6							Golgi membrane|integral to membrane	nucleoside-diphosphatase activity				0						AGAAAGCAGGTACGGGGAGGG	0.582													20	17					0	0	0.008871	0	0
FAM182B	728882	broad.mit.edu	37	20	25848629	25848629	+	RNA	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr20:25848629C>T	uc002wvd.1	-	1		c.158G>A								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						gctgggatgccgtgctgcttc	0													3	8					0	0	0.004672	0	0
SGK2	10110	broad.mit.edu	37	20	42208647	42208647	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr20:42208647A>G	uc002xkv.2	+	11	1284	c.1065A>G	c.(1063-1065)ATA>ATG	p.I355M	SGK2_uc002xkt.2_RNA|SGK2_uc002xkr.2_Missense_Mutation_p.I295M|SGK2_uc010ggm.2_Missense_Mutation_p.I295M|SGK2_uc002xks.2_Missense_Mutation_p.I294M|SGK2_uc002xku.2_Missense_Mutation_p.I295M	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	355	AGC-kinase C-terminal.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCAGCCCCATAAACTGGGATG	0.413													43	43					0	0	0.014410	0	0
LIMK2	3985	broad.mit.edu	37	22	31655910	31655910	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr22:31655910T>C	uc003akh.2	+	5	543	c.398T>C	c.(397-399)ATG>ACG	p.M133T	LIMK2_uc003akg.2_Missense_Mutation_p.M50T|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.M112T|LIMK2_uc003akk.2_Missense_Mutation_p.M112T|LIMK2_uc011aln.1_Missense_Mutation_p.M50T	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	133						mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						CTGGCACCCATGTTTGAGAGA	0.602													27	6					0	0	0.008361	0	0
MORC1	27136	broad.mit.edu	37	3	108703606	108703606	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr3:108703606C>T	uc003dxl.2	-	23	2368	c.2281G>A	c.(2281-2283)GTT>ATT	p.V761I	MORC1_uc011bhn.1_Missense_Mutation_p.V740I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	761	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTGCTAGAACATCATTGCAC	0.363													10	19					0	0	0.010729	0	0
PLOD2	5352	broad.mit.edu	37	3	145803003	145803003	+	Silent	SNP	A	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr3:145803003A>T	uc003evs.1	-	11	1691	c.1185T>A	c.(1183-1185)GTT>GTA	p.V395V	PLOD2_uc003evq.1_Silent_p.V55V|PLOD2_uc011bnm.1_Silent_p.V340V|PLOD2_uc003evr.1_Silent_p.V395V	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	395					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	TTGTCAAAACAACATCTGCAT	0.284													17	24					0	0	0.008871	0	0
TBL1XR1	79718	broad.mit.edu	37	3	176767825	176767825	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr3:176767825T>C	uc003fiw.3	-	7	922	c.662A>G	c.(661-663)GAT>GGT	p.D221G	TBL1XR1_uc003fix.3_Missense_Mutation_p.D221G|TBL1XR1_uc011bpz.1_5'UTR	NM_024665	NP_078941	Q9BZK7	TBL1R_HUMAN	transducin (beta)-like 1 X-linked receptor 1	221					canonical Wnt receptor signaling pathway|cellular lipid metabolic process|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein N-terminus binding|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(143;1.44e-17)|Ovarian(172;0.00163)|Breast(254;0.214)	Acute lymphoblastic leukemia(1;0.00599)|all_hematologic(1;0.0632)|Prostate(884;0.215)	OV - Ovarian serous cystadenocarcinoma(80;9.83e-31)			GCTTGGAACATCTTGCCCTCC	0.413													23	19					0	0	0.014323	0	0
MAP3K13	9175	broad.mit.edu	37	3	185191375	185191375	+	Silent	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr3:185191375G>A	uc010hyf.2	+	12	2522	c.2256G>A	c.(2254-2256)GGG>GGA	p.G752G	MAP3K13_uc011brt.1_Silent_p.G545G|MAP3K13_uc011bru.1_Silent_p.G608G|MAP3K13_uc003fpi.2_Silent_p.G752G|MAP3K13_uc010hyg.2_Silent_p.G442G	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	752					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			AGCCAGTGGGGAGGAGCCCTG	0.542													8	146					0	0	0.006214	0	0
AHSG	197	broad.mit.edu	37	3	186335047	186335047	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr3:186335047G>A	uc003fqk.3	+	4	562	c.481G>A	c.(481-483)GTG>ATG	p.V161M	AHSG_uc003fqj.2_Missense_Mutation_p.V161M|AHSG_uc003fql.3_Missense_Mutation_p.V162M|AHSG_uc003fqm.3_Missense_Mutation_p.V160M|AHSG_uc010hyp.2_Missense_Mutation_p.V124M	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	161	Cystatin fetuin-A-type 2.			PLLAPLNDTRVVHAAKAALAAFNAQNNGSNFQL -> MVGW QEGANHKNGAGRSQKQEMAEKMVPEVASG (in Ref. 12; AAF69649).	acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		CACCAGGGTGGTGCACGCCGC	0.612											OREG0015968	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	54	54					0	0	0.014410	0	0
WHSC2	7469	broad.mit.edu	37	4	1985129	1985129	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:1985129C>T	uc003gem.2	-	11	1777	c.1537G>A	c.(1537-1539)GTG>ATG	p.V513M	WHSC2_uc003gek.2_Missense_Mutation_p.V239M|WHSC2_uc003gel.2_Missense_Mutation_p.V427M|WHSC2_uc003gen.2_Missense_Mutation_p.V367M	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	502					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			ACTGTGTCCACCAGCATGGTT	0.592													70	84					0	0	0.014410	0	0
AASDH	132949	broad.mit.edu	37	4	57204741	57204741	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:57204741A>G	uc003hbn.2	-	15	3277	c.3124T>C	c.(3124-3126)TCT>CCT	p.S1042P	AASDH_uc010ihb.2_Missense_Mutation_p.S557P|AASDH_uc011caa.1_3'UTR|AASDH_uc003hbo.2_Missense_Mutation_p.S942P|AASDH_uc011cab.1_Missense_Mutation_p.S557P|AASDH_uc010ihc.2_3'UTR	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	1042					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				CCATCAGTAGATGCTGCTGCC	0.443													27	34					0	0	0.005443	0	0
RG9MTD2	93587	broad.mit.edu	37	4	100470297	100470297	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:100470297T>C	uc003huy.2	-	8	1281	c.968A>G	c.(967-969)AAG>AGG	p.K323R	RG9MTD2_uc003huz.3_Missense_Mutation_p.K323R|RG9MTD2_uc003hva.3_Missense_Mutation_p.K323R	NM_152292	NP_689505	Q8TBZ6	RG9D2_HUMAN	RNA (guanine-9-) methyltransferase domain	323							methyltransferase activity			ovary(2)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.7e-08)		CTTATCCTGCTTTTCTTCATG	0.408													74	68					0	0	0.014410	0	0
TET2	54790	broad.mit.edu	37	4	106156045	106156045	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:106156045T>A	uc003hxk.2	+	3	1332	c.946T>A	c.(946-948)TTT>ATT	p.F316I	TET2_uc011cez.1_Missense_Mutation_p.F337I|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.F316I|TET2_uc003hxi.1_Missense_Mutation_p.F316I	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	316					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TACCTGTTCCTTTCAGAAACC	0.453			Mis N|F		MDS								29	23					0	0	0.012213	0	0
SLC12A7	10723	broad.mit.edu	37	5	1064225	1064225	+	Silent	SNP	C	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr5:1064225C>G	uc003jbu.2	-	19	2646	c.2580G>C	c.(2578-2580)CTG>CTC	p.L860L		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	860	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GGAAGGGCAGCAGCATGAGCA	0.697													17	20					0	0	0.006122	0	0
TNPO1	3842	broad.mit.edu	37	5	72192301	72192301	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr5:72192301A>G	uc003kck.3	+	19	2307	c.2160A>G	c.(2158-2160)ATA>ATG	p.I720M	TNPO1_uc011csj.1_Missense_Mutation_p.I670M|TNPO1_uc003kch.2_Missense_Mutation_p.I712M|TNPO1_uc003kci.3_Missense_Mutation_p.I712M|TNPO1_uc003kcg.3_Missense_Mutation_p.I712M	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	720					interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		TCATGCCAATATTGGGAACCA	0.338													19	34					0	0	0.008871	0	0
ATXN1	6310	broad.mit.edu	37	6	16327903	16327903	+	Missense_Mutation	SNP	C	A	A	rs3817753		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr6:16327903C>A	uc003nbt.2	-	8	1610	c.639G>T	c.(637-639)CAG>CAT	p.Q213H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q213H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	213	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgctgatgct	0.378													3	21					6.4e-05	7.09565e-05	0.004672	1	0
SCGN	10590	broad.mit.edu	37	6	25701512	25701512	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr6:25701512A>T	uc003nfb.2	+	11	983	c.780A>T	c.(778-780)AAA>AAT	p.K260N	SCGN_uc010jpz.2_Missense_Mutation_p.K151N	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	260	6 (Potential).|EF-hand 6.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						AGGATGGAAAAATTCAGAAGT	0.483													8	87					0	0	0.003080	0	0
TRAF3IP2	10758	broad.mit.edu	37	6	111912700	111912700	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr6:111912700G>T	uc011ebc.1	-	3	1205	c.590C>A	c.(589-591)ACG>AAG	p.T197K	TRAF3IP2_uc003pvg.2_Missense_Mutation_p.T197K|TRAF3IP2_uc003pvf.2_Missense_Mutation_p.T197K|TRAF3IP2_uc010kdw.2_Missense_Mutation_p.T197K|TRAF3IP2_uc010kdx.2_Missense_Mutation_p.T197K	NM_147686	NP_679211	O43734	CIKS_HUMAN	TRAF3 interacting protein 2 isoform 2	206					intracellular signal transduction|positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular				ovary(2)|central_nervous_system(1)	3		all_cancers(87;7.87e-06)|Acute lymphoblastic leukemia(125;3.61e-09)|all_hematologic(75;2.63e-07)|all_epithelial(87;0.0024)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.033)|all cancers(137;0.0412)|Epithelial(106;0.0732)		ATCATATCCCGTGTCTATGGT	0.627													10	82					0.000673444	0.000738616	0.008291	1	0
POM121	9883	broad.mit.edu	37	7	72416770	72416770	+	Silent	SNP	G	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr7:72416770G>A	uc003twj.2	+	15	3929	c.2952G>A	c.(2950-2952)AAG>AAA	p.K984K	POM121_uc010lam.1_Intron	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1249	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CCCGCAAAAAGTAGCCTTTGT	0.592													21	47					0	0	0.018920	0	0
PDIA4	9601	broad.mit.edu	37	7	148702375	148702375	+	Silent	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr7:148702375C>T	uc003wff.2	-	9	1662	c.1380G>A	c.(1378-1380)GGG>GGA	p.G460G		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	460					cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			CCTTCACCTCCCCAGCATAGT	0.572											OREG0018420	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	246					0	0	0.004482	0	0
LPL	4023	broad.mit.edu	37	8	19816813	19816813	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:19816813G>C	uc003wzk.3	+	7	1431	c.1061G>C	c.(1060-1062)AGT>ACT	p.S354T		NM_000237	NP_000228	P06858	LIPL_HUMAN	lipoprotein lipase precursor	354	PLAT.|Heparin-binding (By similarity).				fatty acid biosynthetic process|lipoprotein metabolic process|phospholipid metabolic process|positive regulation of cholesterol storage|positive regulation of sequestering of triglyceride|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	anchored to membrane|chylomicron|plasma membrane|very-low-density lipoprotein particle	heparin binding|lipoprotein lipase activity|phospholipase activity|receptor binding|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	Clofibrate(DB00636)|Gemfibrozil(DB01241)|Orlistat(DB01083)	GGGACTGAGAGTGAAACCCAT	0.453													21	31					0	0	0.014323	0	0
PLEKHA2	59339	broad.mit.edu	37	8	38810172	38810172	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:38810172C>A	uc003xmi.3	+	8	886	c.652C>A	c.(652-654)CGC>AGC	p.R218S	PLEKHA2_uc011lce.1_Missense_Mutation_p.R168S	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	218	PH 2.				positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			CTGGAAACGTCGCTTCTTTGC	0.468													6	22					0.00307968	0.0033066	0.003080	1	0
NBN	4683	broad.mit.edu	37	8	90960111	90960111	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:90960111C>T	uc003yej.1	-	12	1965	c.1855G>A	c.(1855-1857)GAA>AAA	p.E619K	NBN_uc003yei.1_Missense_Mutation_p.E537K|NBN_uc011lgb.1_Missense_Mutation_p.E619K	NM_002485	NP_002476	O60934	NBN_HUMAN	nibrin	619					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator|DNA duplex unwinding|double-strand break repair via homologous recombination|meiosis|mitotic cell cycle G1/S transition checkpoint|mitotic cell cycle G2/M transition DNA damage checkpoint|positive regulation of kinase activity|positive regulation of protein autophosphorylation|regulation of DNA-dependent DNA replication initiation|telomere maintenance	Mre11 complex|nuclear chromosome, telomeric region|nuclear inclusion body|nucleolus|nucleoplasm	protein N-terminus binding|transcription factor binding			central_nervous_system(3)|kidney(3)|lung(1)	7			BRCA - Breast invasive adenocarcinoma(11;0.0344)			TTCCCAATTTCATTTTCTTGC	0.239								Direct_reversal_of_damage|Homologous_recombination	Nijmegen_Breakage_syndrome				4	4					0	0	0.009096	0	0
TTC35	9694	broad.mit.edu	37	8	109462083	109462083	+	Silent	SNP	A	G	G			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:109462083A>G	uc003ymw.1	+	2	107	c.72A>G	c.(70-72)GAA>GAG	p.E24E		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	24						endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			AATGGAGAGAAGAAAACTCAA	0.318													31	34					0	0	0.010818	0	0
AQP7	364	broad.mit.edu	37	9	33385805	33385805	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr9:33385805G>T	uc003zst.2	-	7	757	c.585C>A	c.(583-585)AAC>AAA	p.N195K	SUGT1P1_uc010mjq.1_Intron|AQP7_uc003zsu.1_Missense_Mutation_p.N138K|AQP7_uc010mjs.2_Missense_Mutation_p.N103K|AQP7_uc010mjt.2_Missense_Mutation_p.N103K|AQP7_uc011lnx.1_Missense_Mutation_p.N195K|AQP7_uc011lny.1_Missense_Mutation_p.N194K|AQP7_uc003zss.3_Missense_Mutation_p.N103K|AQP7_uc011lnz.1_Missense_Mutation_p.N103K|AQP7_uc011loa.1_Missense_Mutation_p.P64T	NM_001170	NP_001161	O14520	AQP7_HUMAN	aquaporin 7	195	Cytoplasmic (Potential).				excretion|generation of precursor metabolites and energy	cell-cell junction|cytoplasm|integral to plasma membrane	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.191)		GCAGTGCTGGGTTGTTCTCCT	0.617													36	53					1.36161e-19	1.63394e-19	0.019004	1	0
C10orf71	118461	broad.mit.edu	37	10	50530974	50530974	+	Frame_Shift_Del	DEL	G	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr10:50530974delG	uc010qgp.1	+	3	723	c.384delG	c.(382-384)GTGfs	p.V128fs		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	128											0						GACTGGAGGTGCCAGTTTCCG	0.547													44	78	---	---	---	---					
ATL3	25923	broad.mit.edu	37	11	63403801	63403802	+	Frame_Shift_Ins	INS	-	A	A			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr11:63403801_63403802insA	uc001nxk.1	-	9	1131_1132	c.855_856insT	c.(853-858)ATTGCTfs	p.I285fs	ATL3_uc010rms.1_Frame_Shift_Ins_p.I267fs|ATL3_uc010rmr.1_5'Flank	NM_015459	NP_056274	Q6DD88	ATLA3_HUMAN	atlastin 3	285_286	Cytoplasmic.				endoplasmic reticulum organization|Golgi organization|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	GTP binding|GTPase activity|identical protein binding			pancreas(1)	1						AATTCACCAGCAATATCTGTTC	0.416											OREG0021036	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	64	---	---	---	---					
HNRNPC	3183	broad.mit.edu	37	14	21679712	21679713	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr14:21679712_21679713delAT	uc001vzy.2	-	8	933_934	c.689_690delAT	c.(688-690)AATfs	p.N230fs	HNRNPC_uc001vzw.2_Frame_Shift_Del_p.N217fs|HNRNPC_uc001wad.2_Frame_Shift_Del_p.N150fs|HNRNPC_uc001vzx.2_Intron|HNRNPC_uc001vzz.2_Frame_Shift_Del_p.N217fs|HNRNPC_uc001waa.2_Frame_Shift_Del_p.N230fs|HNRNPC_uc010ail.2_Frame_Shift_Del_p.N230fs|HNRNPC_uc010tlq.1_RNA|HNRNPC_uc001wab.2_Frame_Shift_Del_p.N216fs|HNRNPC_uc001wac.2_Frame_Shift_Del_p.N174fs|HNRNPC_uc010tlr.1_Frame_Shift_Del_p.N95fs|HNRNPC_uc001waf.2_Frame_Shift_Del_p.N217fs|HNRNPC_uc001wae.2_Frame_Shift_Del_p.N217fs	NM_031314	NP_112604	P07910	HNRPC_HUMAN	heterogeneous nuclear ribonucleoprotein C	230	Asp/Glu-rich (acidic).					catalytic step 2 spliceosome|nucleoplasm	identical protein binding|nucleotide binding|RNA binding				0	all_cancers(95;0.00176)		Epithelial(56;1.08e-06)|all cancers(55;8.95e-06)	GBM - Glioblastoma multiforme(265;0.00783)		CTGACTTATCATTCTTCATCTC	0.505													16	15	---	---	---	---					
IMP5	162540	broad.mit.edu	37	17	43922606	43922611	+	In_Frame_Del	DEL	GGCCAA	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr17:43922606_43922611delGGCCAA	uc010wka.1	+	1	334_339	c.334_339delGGCCAA	c.(334-339)GGCCAAdel	p.GQ112del	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	112_113	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GCTGGCTCAGGGCCAAGGTGCCCACG	0.680													10	87	---	---	---	---					
PLA2G6	8398	broad.mit.edu	37	22	38536176	38536176	+	Frame_Shift_Del	DEL	G	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr22:38536176delG	uc003auy.1	-	5	746	c.610delC	c.(610-612)CTCfs	p.L204fs	PLA2G6_uc003auz.1_Frame_Shift_Del_p.L204fs|PLA2G6_uc003ava.1_Frame_Shift_Del_p.L204fs|PLA2G6_uc003avb.2_Frame_Shift_Del_p.L204fs|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Intron	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	204	ANK 2.				cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	CTTCCAAGGAGCTGATGAAAG	0.433													30	7	---	---	---	---					
COMMD8	54951	broad.mit.edu	37	4	47462160	47462160	+	Splice_Site	DEL	C	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:47462160delC	uc003gxi.2	-	2	230	c.222_splice	c.e2+1	p.E74_splice		NM_017845	NP_060315	Q9NX08	COMD8_HUMAN	COMM domain containing 8								protein binding				0						AGAGAAGTTACCTCTTCATCA	0.338													33	40	---	---	---	---					
CEP135	9662	broad.mit.edu	37	4	56847415	56847423	+	In_Frame_Del	DEL	TAAGAAAGG	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr4:56847415_56847423delTAAGAAAGG	uc003hbi.2	+	13	1883_1891	c.1649_1657delTAAGAAAGG	c.(1648-1659)CTAAGAAAGGAA>CAA	p.550_553LRKE>Q	CEP135_uc003hbj.2_In_Frame_Del_p.256_259LRKE>Q	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	550_553	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					TTATCTGCCCTAAGAAAGGAATCCACCCA	0.311													19	38	---	---	---	---					
ZDHHC2	51201	broad.mit.edu	37	8	17043867	17043867	+	Frame_Shift_Del	DEL	T	-	-			TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:17043867delT	uc003wxe.2	+	3	582	c.185delT	c.(184-186)CTTfs	p.L62fs		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	62	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		TATCATCTACTTTTTGCAATG	0.284													9	8	---	---	---	---					
RP1	6101	broad.mit.edu	37	8	55540098	55540099	+	Frame_Shift_Ins	INS	-	T	T	rs139588212	byFrequency	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	g.chr8:55540098_55540099insT	uc003xsd.1	+	4	3804_3805	c.3656_3657insT	c.(3655-3657)AGTfs	p.S1219fs	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1219					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AACATTCAGAGTGTTCCTAAGT	0.446													58	65	---	---	---	---					
