Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZMPSTE24	10269	broad.mit.edu	37	1	40733505	40733505	+	Silent	SNP	A	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:40733505A>G	uc001cfg.2	+	3	529	c.318A>G	c.(316-318)GGA>GGG	p.G106G		NM_005857	NP_005848	O75844	FACE1_HUMAN	zinc metallopeptidase STE24	106						endoplasmic reticulum membrane|Golgi membrane|integral to membrane	metal ion binding|metalloexopeptidase activity				0	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			GACTTTCTGGACGGTTCTGTG	0.383000													4	475					0	0	0.014758	0	0
SASS6	163786	broad.mit.edu	37	1	100572938	100572938	+	Missense_Mutation	SNP	C	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:100572938C>G	uc001dsu.2	-	11	1459	c.1318G>C	c.(1318-1320)GAG>CAG	p.E440Q	SASS6_uc009wdz.2_Missense_Mutation_p.E273Q	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	440	Potential.				centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		ACCTCTTGCTCTTTAATTCGA	0.294000													11	70					0	0	0.013537	0	0
TARS2	80222	broad.mit.edu	37	1	150471422	150471422	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:150471422C>T	uc001euq.2	+	12	1458	c.1451C>T	c.(1450-1452)GCC>GTC	p.A484V	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Missense_Mutation_p.A402V|TARS2_uc009wlt.2_Missense_Mutation_p.A110V|TARS2_uc009wls.2_Missense_Mutation_p.A354V	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	484					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	TCCGTCTATGCCGTTCTTGGC	0.587000													7	618					0	0	0.001984	0	0
RPTN	126638	broad.mit.edu	37	1	152127802	152127802	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:152127802T>C	uc001ezs.1	-	3	1838	c.1773A>G	c.(1771-1773)ATA>ATG	p.I591M		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	591	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TTTGCCCTTGTATTTCCCCAG	0.453000													208	508					0	0	0.014410	0	0
NUP210L	91181	broad.mit.edu	37	1	153991451	153991451	+	Missense_Mutation	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:153991451C>A	uc001fdw.2	-	33	4683	c.4611G>T	c.(4609-4611)ATG>ATT	p.M1537I	NUP210L_uc009woq.2_Missense_Mutation_p.M446I|NUP210L_uc010peh.1_Missense_Mutation_p.M1537I	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1537						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CATGAAAAATCATTGCAGTCC	0.438000													6	168					0.00116845	0.00151211	0.021553	1	0
FAM129A	116496	broad.mit.edu	37	1	184767228	184767228	+	Missense_Mutation	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:184767228C>A	uc001gra.2	-	13	1845	c.1651G>T	c.(1651-1653)GAT>TAT	p.D551Y	FAM129A_uc001grb.1_Missense_Mutation_p.D314Y	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	551					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						AGAGTTTCATCAAGCAGGATC	0.428000													7	69					0.00307968	0.00392771	0.003080	1	0
PTPN14	5784	broad.mit.edu	37	1	214557259	214557259	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:214557259T>C	uc001hkk.1	-	13	2210	c.1939A>G	c.(1939-1941)AAC>GAC	p.N647D	PTPN14_uc010pty.1_Missense_Mutation_p.N548D	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	647					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		ACCATGCTGTTCATCACCTCC	0.662000													43	85					0	0	0.014410	0	0
MOSC1	64757	broad.mit.edu	37	1	220971317	220971317	+	Silent	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:220971317G>A	uc001hms.2	+	4	962	c.714G>A	c.(712-714)AGG>AGA	p.R238R	MOSC1_uc001hmt.2_Silent_p.R238R	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	238	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		CCAACTTCAGGCCCAATATTG	0.443000													101	316					0	0	0.014410	0	0
SLC35F3	148641	broad.mit.edu	37	1	234458910	234458910	+	Missense_Mutation	SNP	A	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:234458910A>T	uc001hwa.1	+	7	1415	c.1187A>T	c.(1186-1188)GAG>GTG	p.E396V	SLC35F3_uc001hvy.1_Missense_Mutation_p.E465V	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	396					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			AAGAAGGAGGAGCCTGCAGAG	0.587000											OREG0014330	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	175					0	0	0.010818	0	0
GTPBP4	23560	broad.mit.edu	37	10	1043230	1043230	+	Silent	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr10:1043230G>A	uc001ift.2	+	5	614	c.543G>A	c.(541-543)AAG>AAA	p.K181K	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Silent_p.K65K|GTPBP4_uc010qae.1_Silent_p.K134K	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	181	GTP (Potential).				negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		ATGTTGGGAAGTCCAGCTTCA	0.443000													182	223					0	0	0.014410	0	0
MUC5B	727897	broad.mit.edu	37	11	1258389	1258389	+	Missense_Mutation	SNP	T	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:1258389T>G	uc009ycr.1	+	41	5497	c.5371T>G	c.(5371-5373)TCC>GCC	p.S1791A	MUC5B_uc009yct.1_Missense_Mutation_p.S1098A|MUC5B_uc001ltb.2_Missense_Mutation_p.S1101A|MUC5B_uc001lta.2_Missense_Mutation_p.S766A	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1098	VWFD 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGCCTGCCGCTCCCAGGTGGG	0.682000													3	8					0	0	0.004672	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17190402	17190402	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:17190402G>A	uc001mmq.3	-	1	953	c.887C>T	c.(886-888)TCA>TTA	p.S296L	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Intron|PIK3C2A_uc001mmr.3_RNA|PIK3C2A_uc010rcx.1_Missense_Mutation_p.S296L|PIK3C2A_uc009ygv.1_Missense_Mutation_p.S296L	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	296					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TAGCAAACTTGAAACATTTTT	0.393000													54	190					0	0	0.014410	0	0
MS4A12	54860	broad.mit.edu	37	11	60268545	60268545	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:60268545C>T	uc001npr.2	+	3	361	c.304C>T	c.(304-306)CAC>TAC	p.H102Y		NM_017716	NP_060186	Q9NXJ0	M4A12_HUMAN	membrane-spanning 4-domains, subfamily A, member	102	Helical; (Potential).					integral to membrane	receptor activity				0						TGGATTGATGCACATTGGTTT	0.373000													43	221					0	0	0.007835	0	0
VWCE	220001	broad.mit.edu	37	11	61026692	61026692	+	Nonsense_Mutation	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:61026692C>A	uc001nra.2	-	20	2602	c.2323G>T	c.(2323-2325)GAG>TAG	p.E775*	VWCE_uc001nrb.2_RNA	NM_152718	NP_689931	Q96DN2	VWCE_HUMAN	von Willebrand factor C and EGF domains	775						extracellular region	calcium ion binding			ovary(1)	1						ACAGGGGCCTCAGTGTCTCCA	0.567000													20	72					4.96729e-08	6.62305e-08	0.008871	1	0
FAM55D	54827	broad.mit.edu	37	11	114465481	114465481	+	Missense_Mutation	SNP	T	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:114465481T>G	uc001ppc.2	-	2	182	c.1A>C	c.(1-3)ATG>CTG	p.M1L	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	1						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		CTTATTTTCATGATTAGGATC	0.254000													7	32					0	0	0.003080	0	0
ESAM	90952	broad.mit.edu	37	11	124624584	124624584	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr11:124624584T>C	uc001qav.3	-	5	856	c.683A>G	c.(682-684)AAT>AGT	p.N228S	VSIG2_uc001qas.2_5'Flank|VSIG2_uc001qat.2_5'Flank|ESAM_uc010sao.1_Missense_Mutation_p.N49S|ESAM_uc001qau.3_Missense_Mutation_p.N155S|ESAM_uc001qaw.3_RNA|ESAM_uc001qax.3_RNA|ESAM_uc009zbi.2_Missense_Mutation_p.N228S	NM_138961	NP_620411	Q96AP7	ESAM_HUMAN	endothelial cell adhesion molecule precursor	228	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|leukocyte migration	adherens junction|integral to membrane|tight junction					0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.022)		GCCCACCTCATTGTGGGCCTT	0.522000													4	270					0	0	0.009096	0	0
M6PR	4074	broad.mit.edu	37	12	9096395	9096395	+	Splice_Site	SNP	A	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr12:9096395A>G	uc001qvf.2	-	4	623	c.453_splice	c.e4+1	p.A151_splice		NM_002355	NP_002346	P20645	MPRD_HUMAN	cation-dependent mannose-6-phosphate receptor						endosome to lysosome transport|receptor-mediated endocytosis	cell surface|endosome|integral to plasma membrane|lysosomal membrane	mannose binding|mannose transmembrane transporter activity|transmembrane receptor activity				0		Hepatocellular(102;0.137)		BRCA - Breast invasive adenocarcinoma(232;0.0146)		AGGGTGCCTCACCGCTAGGGT	0.527000													15	69					0	0	0.024245	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412623	105412623	+	Silent	SNP	A	G	G			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr14:105412623A>G	uc010axc.1	-	7	9285	c.9165T>C	c.(9163-9165)GCT>GCC	p.A3055A	AHNAK2_uc001ypx.2_Silent_p.A2955A	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3055						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTTTGAGGCCAGCTCCCTCGG	0.607000													5	277					0	0	0.014758	0	0
ADAM6	8755	broad.mit.edu	37	14	106364007	106364007	+	Splice_Site	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr14:106364007T>C	uc010tyt.1	-	2912		c.47662_splice	c.e2912+1		KIAA0125_uc001ysq.2_Intron|KIAA0125_uc001ysr.2_Intron					Parts of antibodies, mostly variable regions.												0						CAGTGCTGTATAGGGGGCTCC	0.547000													2	6					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106926482	106926482	+	RNA	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr14:106926482T>C	uc010tyt.1	-	235		c.10073A>G			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						CCAGCTGCACTTCACACTGGA	0.527000													4	104					0	0	0.014758	0	0
ADAM6	8755	broad.mit.edu	37	14	106967163	106967163	+	RNA	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr14:106967163G>A	uc010tyt.1	-	201		c.9278C>T								Parts of antibodies, mostly variable regions.												0						ACTTCTGTGCGTAGCTTGTGC	0.562000													93	50					0	0	0.014410	0	0
MEIS2	4212	broad.mit.edu	37	15	37184626	37184626	+	Missense_Mutation	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr15:37184626C>A	uc001zjr.2	-	12	2219	c.1182G>T	c.(1180-1182)CAG>CAT	p.Q394H	MEIS2_uc001zjl.2_3'UTR|MEIS2_uc010ucj.1_Missense_Mutation_p.Q374H|MEIS2_uc001zjm.2_3'UTR|MEIS2_uc001zjn.2_3'UTR|MEIS2_uc001zjo.2_3'UTR|MEIS2_uc001zjp.2_3'UTR|MEIS2_uc001zjs.2_Missense_Mutation_p.Q387H|MEIS2_uc001zju.2_3'UTR|MEIS2_uc001zjt.2_Missense_Mutation_p.Q387H|MEIS2_uc001zjj.2_Missense_Mutation_p.Q90H|MEIS2_uc001zjk.2_Missense_Mutation_p.Q83H	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	394					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		TAGGACCACCCTGAGAAACGT	0.458000													45	129					4.00472e-15	5.50649e-15	0.014410	1	0
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr15:78211548T>C	uc010bky.2	-	11	983	c.219A>G	c.(217-219)CAA>CAG	p.Q73Q		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CCACCTGGGATTGGAGCTTTC	0.562000													6	252					0	0	0.001984	0	0
TNP2	7142	broad.mit.edu	37	16	11362955	11362955	+	Silent	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr16:11362955G>A	uc002das.2	-	1	206	c.165C>T	c.(163-165)AGC>AGT	p.S55S	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	55					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						GGTTGCGGTGGCTGGCCGGGC	0.617000													6	298					0	0	0.001984	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84940197	84940197	+	Silent	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr16:84940197G>A	uc010voh.1	+	15	1670	c.1443G>A	c.(1441-1443)CTG>CTA	p.L481L	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.L480L	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	481	LCCL 2.					extracellular region|transport vesicle					0						TTTTCAGCCTGGGGACTCCTC	0.597000													56	195					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	17	39296616	39296616	+	RNA	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:39296616C>T	uc010cxk.1	-	1		c.88G>A								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		CAGCTGGACACACAGCAGCTG	0.562000													7	257					0	0	0.015359	0	0
NGFR	4804	broad.mit.edu	37	17	47588006	47588006	+	Silent	SNP	G	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:47588006G>T	uc002ioz.3	+	4	926	c.801G>T	c.(799-801)GTG>GTT	p.V267V		NM_002507	NP_002498	P08138	TNR16_HUMAN	nerve growth factor receptor precursor	267	Helical; (Potential).				anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|membrane protein intracellular domain proteolysis|negative regulation of axonogenesis|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis	cell surface|cytosol|endosome|extracellular region|integral to plasma membrane|nucleoplasm				ovary(1)|lung(1)	2	all_cancers(4;1.45e-13)|Breast(4;6.34e-28)|all_epithelial(4;4.95e-17)					TGGGCCTTGTGGCCTACATAG	0.577000													44	223					8.04919e-23	1.14247e-22	0.014410	1	0
CA10	56934	broad.mit.edu	37	17	49710848	49710848	+	Missense_Mutation	SNP	A	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:49710848A>C	uc002itw.3	-	8	1939	c.953T>G	c.(952-954)CTT>CGT	p.L318R	CA10_uc002itu.3_Missense_Mutation_p.L247R|CA10_uc002itv.3_Missense_Mutation_p.L324R|CA10_uc002itx.3_Missense_Mutation_p.L318R|CA10_uc002ity.3_Missense_Mutation_p.L318R|CA10_uc002itz.2_Missense_Mutation_p.L318R	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	318					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			TCTATACTGAAGCTTCTGGGC	0.502000													19	104					0	0	0.012319	0	0
COG1	9382	broad.mit.edu	37	17	71204538	71204538	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:71204538C>T	uc002jjg.2	+	14	2927	c.2891C>T	c.(2890-2892)ACG>ATG	p.T964M	COG1_uc002jjh.2_3'UTR|COG1_uc002jjf.1_3'UTR|FAM104A_uc002jjj.3_3'UTR|FAM104A_uc002jji.3_3'UTR	NM_018714	NP_061184	Q8WTW3	COG1_HUMAN	component of oligomeric golgi complex 1	964					Golgi organization|intra-Golgi vesicle-mediated transport|protein transport	Golgi membrane|Golgi transport complex	protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			GAAGACAACACGTCTGCACCT	0.473000													7	714					0	0	0.001984	0	0
TMEM146	257062	broad.mit.edu	37	19	5763295	5763295	+	Silent	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr19:5763295C>A	uc002mda.2	+	16	1558	c.1497C>A	c.(1495-1497)ATC>ATA	p.I499I	TMEM146_uc010duj.1_Silent_p.I157I	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	499	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						GTGTGGATATCAAGCCACTGG	0.388000													7	78					1.33987e-11	1.81398e-11	0.008291	1	0
ZNF681	148213	broad.mit.edu	37	19	23926850	23926850	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr19:23926850G>A	uc002nrk.3	-	4	1644	c.1502C>T	c.(1501-1503)ACT>ATT	p.T501I	ZNF681_uc002nrl.3_Missense_Mutation_p.T432I|ZNF681_uc002nrj.3_Missense_Mutation_p.T432I	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	501					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				TTTCTCTCCAGTATGAATTCT	0.363000													12	37					0	0	0.013537	0	0
ADCK4	79934	broad.mit.edu	37	19	41198098	41198098	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr19:41198098C>T	uc002oor.2	-	15	1779	c.1477G>A	c.(1477-1479)GCA>ACA	p.A493T	NUMBL_uc010xvq.1_5'Flank|NUMBL_uc002oon.2_5'Flank|NUMBL_uc002ooo.2_5'Flank|NUMBL_uc010xvr.1_5'Flank|ADCK4_uc002oop.1_Missense_Mutation_p.A170T|ADCK4_uc002ooq.1_Missense_Mutation_p.A452T	NM_024876	NP_079152	Q96D53	ADCK4_HUMAN	aarF domain containing kinase 4 isoform a	493						integral to membrane	protein serine/threonine kinase activity				0			Lung(22;9.49e-05)|LUSC - Lung squamous cell carcinoma(20;0.000219)			AAAGCCCCTGCCAGCTTGCGG	0.687000													3	13					0	0	0.004672	0	0
HRC	3270	broad.mit.edu	37	19	49657602	49657602	+	Missense_Mutation	SNP	C	T	T	rs146437807		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr19:49657602C>T	uc002pmv.2	-	1	1080	c.893G>A	c.(892-894)CGA>CAA	p.R298Q		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	298	4 X tandem repeats, acidic.|1-3.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		TTCATGGCTTCGGTGCCTGTG	0.527000													60	50					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	2	62374018	62374018	+	Splice_Site	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:62374018C>T	uc002sbr.2	-	1		c.1_splice	c.e1-1							Homo sapiens cDNA clone IMAGE:4698949, partial cds.																		AGGGAGCTCACTCAGTGGGTT	0.512000													14	91					0	0	0.006122	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73315269	73315269	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:73315269C>T	uc002siu.3	-	3	1718	c.1477G>A	c.(1477-1479)GCC>ACC	p.A493T	RAB11FIP5_uc002sit.3_Missense_Mutation_p.A415T	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	493					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						TGTGGGGAGGCCCCCAGGATG	0.607000													49	361					0	0	0.014410	0	0
RETSAT	54884	broad.mit.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	A	A	rs149307146	by1000genomes	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:85571180G>A	uc002spd.2	-	9	1666	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	RETSAT_uc010fge.2_Intron|RETSAT_uc010ysm.1_Missense_Mutation_p.S431F|RETSAT_uc010fgf.2_Missense_Mutation_p.S283F	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	492					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	TTCCACAAAGGAGTTTTTGAA	0.537000													6	306					0	0	0.021553	0	0
LCT	3938	broad.mit.edu	37	2	136575259	136575259	+	Missense_Mutation	SNP	G	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:136575259G>C	uc002tuu.1	-	6	1370	c.1359C>G	c.(1357-1359)TTC>TTG	p.F453L		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	453	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGGAGATGGAGAACTTGTACA	0.622000													4	243					0	0	0.009096	0	0
SCN3A	6328	broad.mit.edu	37	2	166010994	166010994	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:166010994C>T	uc002ucx.2	-	11	1840	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	SCN3A_uc002ucy.2_Missense_Mutation_p.E450K|SCN3A_uc002ucz.2_Missense_Mutation_p.E450K|SCN3A_uc002uda.1_Missense_Mutation_p.E319K|SCN3A_uc002udb.1_Missense_Mutation_p.E319K	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	450						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTAAGCTGTTCGAGCATCTGC	0.403000													5	73					0	0	0.001984	0	0
TTC30B	150737	broad.mit.edu	37	2	178416990	178416990	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:178416990C>T	uc002uln.2	-	1	535	c.502G>A	c.(502-504)GGA>AGA	p.G168R	TTC30B_uc010zfc.1_5'UTR	NM_152517	NP_689730	Q8N4P2	TT30B_HUMAN	tetratricopeptide repeat domain 30B	168	TPR 3.			Missing (in Ref. 1; BAB70953).	cell projection organization	cilium	binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.00151)|Epithelial(96;0.00931)|all cancers(119;0.0362)			TCATACTGTCCCTCCTTGTAG	0.567000													92	639					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179415765	179415765	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:179415765G>A	uc010zfg.1	-	285	84013	c.83789C>T	c.(83788-83790)GCA>GTA	p.A27930V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A21625V|TTN_uc010zfi.1_Missense_Mutation_p.A21558V|TTN_uc010zfj.1_Missense_Mutation_p.A21433V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28857							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCATTTCTTGCAATTATTCT	0.418000													3	30					0	0	0.004672	0	0
TTLL4	9654	broad.mit.edu	37	2	219612347	219612347	+	Silent	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:219612347C>T	uc002viy.2	+	11	2647	c.2277C>T	c.(2275-2277)AGC>AGT	p.S759S	TTLL4_uc010zkl.1_Silent_p.S594S|TTLL4_uc010fvx.2_Silent_p.S695S|TTLL4_uc010zkm.1_5'UTR	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	759	TTL.				protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		ACCTCATCAGCGGCAGCAAGT	0.493000													5	296					0	0	0.001984	0	0
FAM124B	79843	broad.mit.edu	37	2	225266233	225266233	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr2:225266233C>T	uc002vnx.2	-	1	479	c.253G>A	c.(253-255)GTC>ATC	p.V85I	FAM124B_uc002vnw.2_Missense_Mutation_p.V85I	NM_001122779	NP_001116251	Q9H5Z6	F124B_HUMAN	hypothetical protein LOC79843 isoform a	85							protein binding			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0126)|Lung NSC(271;0.0161)|all_hematologic(139;0.138)		Epithelial(121;4.4e-10)|all cancers(144;2.02e-07)|Lung(261;0.00766)|LUSC - Lung squamous cell carcinoma(224;0.00825)		GAGTCCAGGACGCGAAATAGC	0.552000													14	105					0	0	0.006122	0	0
PFKFB4	5210	broad.mit.edu	37	3	48577177	48577177	+	Nonsense_Mutation	SNP	C	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr3:48577177C>A	uc003ctv.2	-	5	423	c.406G>T	c.(406-408)GAA>TAA	p.E136*	PFKFB4_uc003ctw.2_5'UTR|PFKFB4_uc010hkc.2_Nonsense_Mutation_p.E136*|PFKFB4_uc003ctx.2_Nonsense_Mutation_p.E93*|PFKFB4_uc010hkb.2_Nonsense_Mutation_p.E136*|PFKFB4_uc011bbm.1_Nonsense_Mutation_p.E125*|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	136	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		GCTCTCCGTTCTCGGGTGGTG	0.567000													42	60					5.34276e-22	7.4629e-22	0.014410	1	0
TKT	7086	broad.mit.edu	37	3	53264627	53264627	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr3:53264627C>T	uc003dgo.2	-	8	1063	c.953G>A	c.(952-954)CGC>CAC	p.R318H	TKT_uc003dgp.2_5'UTR|TKT_uc011beo.1_Missense_Mutation_p.R271H|TKT_uc003dgq.2_Missense_Mutation_p.R318H|TKT_uc011beq.1_Missense_Mutation_p.R326H|TKT_uc011ber.1_Missense_Mutation_p.R120H|TKT_uc011bep.1_Missense_Mutation_p.R235H	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	318					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	GTAGGCCTTGCGGGTGGCTAT	0.587000													4	66					0	0	0.021553	0	0
PPP4R2	151987	broad.mit.edu	37	3	73110176	73110176	+	Missense_Mutation	SNP	T	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr3:73110176T>A	uc003dph.1	+	5	454	c.384T>A	c.(382-384)AAT>AAA	p.N128K	PPP4R2_uc003dpi.1_Missense_Mutation_p.N71K|FLJ10213_uc003dpj.2_5'Flank	NM_174907	NP_777567	Q9NY27	PP4R2_HUMAN	protein phosphatase 4, regulatory subunit 2	128					mRNA processing|protein modification process|regulation of double-strand break repair via homologous recombination|RNA splicing	centrosome|nucleus|protein phosphatase 4 complex	protein binding, bridging|protein phosphatase type 4 regulator activity			lung(1)	1		Prostate(10;0.0187)|Lung SC(41;0.236)		Epithelial(33;1.76e-07)|BRCA - Breast invasive adenocarcinoma(55;9.42e-05)|LUSC - Lung squamous cell carcinoma(21;0.00211)|Lung(16;0.00643)|KIRC - Kidney renal clear cell carcinoma(39;0.0164)|Kidney(39;0.0193)|OV - Ovarian serous cystadenocarcinoma(275;0.031)		TATTGCAGAATGTGATGGTTG	0.259000													5	21					0	0	0.003080	0	0
MED12L	116931	broad.mit.edu	37	3	151072983	151072983	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr3:151072983C>T	uc003eyp.2	+	16	2406	c.2368C>T	c.(2368-2370)CTC>TTC	p.L790F	MED12L_uc011bnz.1_Missense_Mutation_p.L650F|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_5'Flank	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	790					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTTCACTAAACTCCAGCTCCT	0.358000													15	38					0	0	0.028581	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244416	1244416	+	Missense_Mutation	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr5:1244416C>T	uc003jby.1	+	10	1547	c.1424C>T	c.(1423-1425)GCC>GTC	p.A475V		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	475	Helical; Name=10; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GACAATTTTGCCGCTTCCCCG	0.582000													4	208					0	0	0.014758	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775403	27775403	+	Silent	SNP	C	T	T	rs141648774		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr6:27775403C>T	uc003njl.2	-	1	307	c.282G>A	c.(280-282)GAG>GAA	p.E94E	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	94					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CGGTCTGGATCTCCCTGGAGG	0.617000													102	37					0	0	0.014410	0	0
C6orf142	90523	broad.mit.edu	37	6	53989447	53989447	+	Silent	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr6:53989447T>C	uc003pcg.3	+	3	509	c.396T>C	c.(394-396)ATT>ATC	p.I132I	C6orf142_uc003pcf.2_Silent_p.I132I|C6orf142_uc003pch.3_Silent_p.I70I|C6orf142_uc011dwz.1_Silent_p.I91I|C6orf142_uc011dxa.1_Silent_p.I143I	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	132						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					ATGTCCTTATTGTGGACTCCG	0.502000													115	33					0	0	0.014410	0	0
TRRAP	8295	broad.mit.edu	37	7	98563408	98563408	+	Missense_Mutation	SNP	G	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr7:98563408G>T	uc003upp.2	+	48	7254	c.7045G>T	c.(7045-7047)GCC>TCC	p.A2349S	TRRAP_uc011kis.1_Missense_Mutation_p.A2331S|TRRAP_uc003upr.2_Missense_Mutation_p.A2048S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2349	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CTTCATCCAGGCCATCCTGAC	0.542000													9	119					0.00448238	0.00563499	0.004482	1	0
NOS3	4846	broad.mit.edu	37	7	150698913	150698913	+	Missense_Mutation	SNP	G	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr7:150698913G>A	uc003wif.2	+	13	1803	c.1507G>A	c.(1507-1509)GTG>ATG	p.V503M	NOS3_uc011kuy.1_Missense_Mutation_p.V297M|NOS3_uc011kuz.1_Missense_Mutation_p.V503M|NOS3_uc011kva.1_Missense_Mutation_p.V503M|NOS3_uc011kvb.1_Missense_Mutation_p.V503M	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	503	Calmodulin-binding (Potential).				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CCGCAGCGCCGTGAAGATCTC	0.642000													43	88					0	0	0.014410	0	0
OXR1	55074	broad.mit.edu	37	8	107752622	107752622	+	Missense_Mutation	SNP	T	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr8:107752622T>A	uc011lht.1	+	13	2317	c.2218T>A	c.(2218-2220)TAT>AAT	p.Y740N	OXR1_uc003ymf.2_Missense_Mutation_p.Y712N|OXR1_uc011lhu.1_Missense_Mutation_p.Y705N|OXR1_uc010mcg.2_RNA|OXR1_uc010mch.2_Missense_Mutation_p.Y368N|OXR1_uc003ymk.2_Missense_Mutation_p.Y109N|OXR1_uc003yml.2_Missense_Mutation_p.Y82N	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	740	TLD.				cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			GACTCTTGTTTATGGTACTGG	0.383000													8	51					0	0	0.006214	0	0
AKNA	80709	broad.mit.edu	37	9	117139726	117139726	+	Missense_Mutation	SNP	T	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr9:117139726T>C	uc004biq.3	-	2	496	c.361A>G	c.(361-363)ACT>GCT	p.T121A	AKNA_uc004bio.3_5'Flank|AKNA_uc004bip.3_Missense_Mutation_p.T40A|AKNA_uc004bir.3_Missense_Mutation_p.T121A|AKNA_uc004bis.3_Missense_Mutation_p.T121A|AKNA_uc010mve.2_Missense_Mutation_p.T2A|AKNA_uc004biu.1_Intron|AKNA_uc004biv.1_Missense_Mutation_p.T121A|AKNA_uc004biw.1_Missense_Mutation_p.T121A	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						TCCTCTTCAGTCATGTCCAGC	0.602000													68	66					0	0	0.014410	0	0
DBC1	1620	broad.mit.edu	37	9	121930244	121930244	+	Silent	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr9:121930244C>T	uc004bkc.2	-	8	1860	c.1404G>A	c.(1402-1404)TCG>TCA	p.S468S		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	468					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CGCTCCGCTCCGAGTCCACGT	0.592000													21	71					0	0	0.014323	0	0
NLGN3	54413	broad.mit.edu	37	X	70387072	70387072	+	Silent	SNP	C	T	T			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chrX:70387072C>T	uc004dzd.1	+	6	1325	c.1125C>T	c.(1123-1125)GGC>GGT	p.G375G	NLGN3_uc010nlb.1_Silent_p.G335G|NLGN3_uc004dzb.2_Silent_p.G355G|NLGN3_uc004dzc.2_Silent_p.G238G|NLGN3_uc011mps.1_Silent_p.G335G|NLGN3_uc004dze.2_Silent_p.G173G	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	375	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					TGGCCTTTGGCCCTGTGATTG	0.557000													4	123					0	0	0.009096	0	0
HDAC8	55869	broad.mit.edu	37	X	71681922	71681922	+	Missense_Mutation	SNP	G	C	C			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chrX:71681922G>C	uc004eau.2	-	9	979	c.937C>G	c.(937-939)CGA>GGA	p.R313G	HDAC8_uc011mqe.1_Missense_Mutation_p.R170G|HDAC8_uc011mqf.1_Missense_Mutation_p.R118G|HDAC8_uc011mqg.1_Missense_Mutation_p.R222G	NM_018486	NP_060956	Q9BY41	HDAC8_HUMAN	histone deacetylase 8	313	Histone deacetylase.				chromatin assembly or disassembly|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nuclear chromosome	histone deacetylase activity (H3-K16 specific)|metal ion binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding				0	Renal(35;0.156)				Vorinostat(DB02546)	GTCCAGCATCGAGCCGTGTTG	0.473000													10	17					0	0	0.008291	0	0
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:40713708_40713709delTC	uc001cfe.2	+	1	136_137	c.43_44delTC	c.(43-45)TCTfs	p.S15fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													10	609	---	---	---	---					
NES	10763	broad.mit.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	-	-			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:156642804delG	uc001fpq.2	-	4	1309	c.1176delC	c.(1174-1176)CCCfs	p.P392fs		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	392	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTGAGGTGTGGGGGGGATGG	0.597													7	840	---	---	---	---					
TPR	7175	broad.mit.edu	37	1	186327733	186327735	+	In_Frame_Del	DEL	GAT	-	-			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr1:186327733_186327735delGAT	uc001grv.2	-	13	1734_1736	c.1437_1439delATC	c.(1435-1440)TCATCT>TCT	p.479_480SS>S	TPR_uc010pop.1_In_Frame_Del_p.555_556SS>S	NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	479_480	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CTCAAGTACAGATGATTGCTTGT	0.320			T	NTRK1	papillary thyroid								7	56	---	---	---	---					
RGS9	8787	broad.mit.edu	37	17	63156389	63156390	+	Frame_Shift_Ins	INS	-	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:63156389_63156390insA	uc002jfe.2	+	4	354_355	c.244_245insA	c.(244-246)TACfs	p.Y82fs	RGS9_uc010dem.2_Frame_Shift_Ins_p.Y82fs|RGS9_uc002jfd.2_Frame_Shift_Ins_p.Y82fs|RGS9_uc002jff.2_RNA	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	82	DEP.				intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						CAGGTATGGCTACATTTACCCC	0.500													14	616	---	---	---	---					
TMC8	147138	broad.mit.edu	37	17	76134728	76134757	+	In_Frame_Del	DEL	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	-	-	rs150356106		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr17:76134728_76134757delGCCCTTGGGCTCCCGCCCATTGGCCAGCGT	uc002jup.2	+	14	2120_2149	c.1738_1767delGCCCTTGGGCTCCCGCCCATTGGCCAGCGT	c.(1738-1767)GCCCTTGGGCTCCCGCCCATTGGCCAGCGTdel	p.ALGLPPIGQR580del	TMC8_uc002juq.2_In_Frame_Del_p.ALGLPPIGQR357del|TMC8_uc002jur.1_In_Frame_Del_p.PLGSRPLASV30del	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	580_589	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			GGAGCTGGTGGCCCTTGGGCTCCCGCCCATTGGCCAGCGTGCCCTCCACT	0.670									Epidermodysplasia_Verruciformis_Familial_Clustering_of				10	516	---	---	---	---					
KIAA1632	57724	broad.mit.edu	37	18	43514887	43514888	+	Frame_Shift_Ins	INS	-	A	A			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr18:43514887_43514888insA	uc002lbm.2	-	11	2244_2245	c.2144_2145insT	c.(2143-2145)CTGfs	p.L715fs	KIAA1632_uc002lbo.1_Frame_Shift_Ins_p.L715fs	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	715					autophagy						0						TTTGCACAGACAGAGTCCCAAA	0.495													34	117	---	---	---	---					
HAVCR1	26762	broad.mit.edu	37	5	156482352	156482362	+	Frame_Shift_Del	DEL	AATAGCTTATA	-	-	rs111358310		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr5:156482352_156482362delAATAGCTTATA	uc010jij.1	-	3	414_424	c.229_239delTATAAGCTATT	c.(229-240)TATAAGCTATTGfs	p.Y77fs	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Frame_Shift_Del_p.Y77fs|HAVCR1_uc011ddm.1_Frame_Shift_Del_p.Y77fs	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	77_80	Extracellular (Potential).|Ig-like V-type.				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAGGTCCCCCAATAGCTTATAGCGTGTGTCC	0.479													52	224	---	---	---	---					
NSD1	64324	broad.mit.edu	37	5	176710903	176710903	+	Frame_Shift_Del	DEL	T	-	-			TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	g.chr5:176710903delT	uc003mfr.3	+	20	6263	c.6125delT	c.(6124-6126)CTTfs	p.L2042fs	NSD1_uc003mft.3_Frame_Shift_Del_p.L1773fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.L1690fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2042	SET.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CGTGTAGGCCTTTTTGCACTA	0.438			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			7	1031	---	---	---	---					
