Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16907371	16907371	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:16907371C>T	uc009vos.1	-	16	2348	c.1460G>A	c.(1459-1461)GGC>GAC	p.G487D	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.G216D	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	487	NBPF 2.			G -> S (in Ref. 2; BAB21784).		cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTCACAAGGGCCGTGGCTATT	0.498000													20	573					0	0	0.144211	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													8	66					0	0	0.058154	0	0
ANKRD35	148741	broad.mit.edu	37	1	145562384	145562384	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:145562384G>C	uc001eob.1	+	10	2180	c.2072G>C	c.(2071-2073)CGG>CCG	p.R691P	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.R534P	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	691	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GAGAAGCTGCGGAAGCTCCTG	0.632000													6	36					0	0	0.029380	0	0
ATP1B1	481	broad.mit.edu	37	1	169094257	169094257	+	RNA	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:169094257T>G	uc001gfs.1	+	3		c.483T>G			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AGGGATGACATGATTTTTGAA	0.373000													44	207					0	0	0.139131	0	0
AGT	183	broad.mit.edu	37	1	230845905	230845905	+	Missense_Mutation	SNP	G	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:230845905G>T	uc001hty.3	-	2	1200	c.692C>A	c.(691-693)ACC>AAC	p.T231N	AGT_uc009xfe.2_Missense_Mutation_p.T231N|AGT_uc009xff.2_Missense_Mutation_p.T203N	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	231					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	GACCACAGGGGTATAGAGAGC	0.597000													10	67					0.000442599	0.000481652	0.058154	1	0
ARID4B	51742	broad.mit.edu	37	1	235386544	235386544	+	Silent	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr1:235386544T>C	uc001hwq.2	-	13	1500	c.1002A>G	c.(1000-1002)GGA>GGG	p.G334G	ARID4B_uc001hwr.2_Silent_p.G334G|ARID4B_uc001hws.3_Silent_p.G334G|ARID4B_uc001hwt.3_Silent_p.G15G	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	334	ARID.|Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			AATTTCGATATCCAAGTACAG	0.299000													5	30					0	0	0.014758	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62648933	62648934	+	Nonsense_Mutation	DNP	TC	AG	AG			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr10:62648933_62648934TC>AG	uc001jli.2	-	7	930_931	c.492_493GA>CT	c.(490-495)AAGAGA>AACTGA	p.164_165KR>N*	RHOBTB1_uc001jlh.2_Nonsense_Mutation_p.164_165KR>N*|RHOBTB1_uc001jlj.2_Nonsense_Mutation_p.164_165KR>N*|RHOBTB1_uc001jlk.2_Nonsense_Mutation_p.164_165KR>N*|RHOBTB1_uc009xpe.1_Nonsense_Mutation_p.102_103KR>N*|RHOBTB1_uc001jll.2_5'UTR	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	164_165	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					ATATCCCCTCTCTTTATGGGCC	0.391000													11	96					0	0	0.115264	0	0
ENTPD7	57089	broad.mit.edu	37	10	101458575	101458575	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr10:101458575G>C	uc001kqa.3	+	10	1473	c.1295G>C	c.(1294-1296)GGT>GCT	p.G432A	ENTPD7_uc009xwl.2_Missense_Mutation_p.G434A	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	432	Vesicular (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		TTGCGCATTGGTGGCCGCTAC	0.383000													10	44					0	0	0.069234	0	0
NFKB2	4791	broad.mit.edu	37	10	104156717	104156717	+	Silent	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr10:104156717C>T	uc001kvb.2	+	6	565	c.300C>T	c.(298-300)GAC>GAT	p.D100D	NFKB2_uc001kva.2_Silent_p.D100D|NFKB2_uc010qqk.1_Silent_p.D100D|NFKB2_uc001kvd.2_Silent_p.D100D|NFKB2_uc009xxc.2_Silent_p.D100D	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	100	RHD.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		CACACAGTGACCCACCTCGTG	0.597000			T	IGH@	B-NHL								7	43					0	0	0.029380	0	0
OR51T1	401665	broad.mit.edu	37	11	4904096	4904096	+	Silent	SNP	A	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:4904096A>C	uc010qyp.1	+	1	1048	c.1048A>C	c.(1048-1050)AGG>CGG	p.R350R		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAGGGGTCTTAGGGGAAGATG	0.468000													8	89					0	0	0.047766	0	0
CCKBR	887	broad.mit.edu	37	11	6291417	6291417	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:6291417G>A	uc001mcp.2	+	3	696	c.503G>A	c.(502-504)CGC>CAC	p.R168H	CCKBR_uc001mcq.2_Missense_Mutation_p.R96H|CCKBR_uc001mcr.2_Missense_Mutation_p.R168H|CCKBR_uc001mcs.2_Missense_Mutation_p.R168H	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	168	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TGGCAGACGCGCTCCCACGCG	0.647000													10	32					0	0	0.069234	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45926284	45926284	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:45926284C>T	uc001nbr.2	+	9	1962	c.1792C>T	c.(1792-1794)CGG>TGG	p.R598W		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	598	PID.				vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		CACCACCCGCCGGCTCACCGT	0.612000													17	77					0	0	0.033300	0	0
MADD	8567	broad.mit.edu	37	11	47345285	47345285	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:47345285G>C	uc001ner.1	+	31	4632	c.4441G>C	c.(4441-4443)GAG>CAG	p.E1481Q	MADD_uc001neq.2_Missense_Mutation_p.E1422Q|MADD_uc001nev.1_Missense_Mutation_p.E1379Q|MADD_uc001nes.1_Missense_Mutation_p.E1399Q|MADD_uc001net.1_Missense_Mutation_p.E1442Q|MADD_uc009yln.1_Missense_Mutation_p.E1375Q|MADD_uc001neu.1_Missense_Mutation_p.E1379Q|MADD_uc001nex.2_Missense_Mutation_p.E1481Q|MADD_uc001nez.2_Missense_Mutation_p.E1378Q|MADD_uc001new.2_Missense_Mutation_p.E1421Q|MADD_uc009ylo.2_Missense_Mutation_p.E395Q	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1481					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CTGGTGGTACGAGAAGCTCAT	0.498000													16	65					0	0	0.033300	0	0
OR5D14	219436	broad.mit.edu	37	11	55563325	55563326	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:55563325_55563326CT>AA	uc010rim.1	+	1	294_295	c.294_295CT>AA	c.(292-297)AGCTGC>AGAAGC	p.98_99SC>RS		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	98_99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TCTACTTTAGCTGCATGATGCA	0.455000													7	66					0	0	0.115264	0	0
SLC22A10	387775	broad.mit.edu	37	11	63064875	63064875	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:63064875C>T	uc009yor.2	+	3	815	c.607C>T	c.(607-609)CGC>TGC	p.R203C	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	203	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTGTGTACTACGCTTCTTGGC	0.408000													29	168					0	0	0.108266	0	0
MALAT1	378938	broad.mit.edu	37	11	65266413	65266413	+	RNA	SNP	G	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:65266413G>T	uc010roh.1	+	1		c.1181G>T				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTTAACCGAAGAACTACTTTT	0.413000													17	87					6.49762e-13	7.28521e-13	0.038395	1	0
NUMA1	4926	broad.mit.edu	37	11	71724282	71724282	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:71724282C>T	uc001orl.1	-	15	4439	c.4267G>A	c.(4267-4269)GCT>ACT	p.A1423T	NUMA1_uc009ysw.1_Missense_Mutation_p.A986T|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.A1423T|NUMA1_uc001orn.2_Missense_Mutation_p.A986T|NUMA1_uc009ysx.1_Missense_Mutation_p.A1423T|NUMA1_uc001oro.1_Missense_Mutation_p.A1423T	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1423	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						AGCTGCTGAGCTGTTCGCTCC	0.672000			T	RARA	APL								19	81					0	0	0.055883	0	0
INPPL1	3636	broad.mit.edu	37	11	71948376	71948376	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:71948376C>T	uc001osf.2	+	26	3235	c.3088C>T	c.(3088-3090)CGG>TGG	p.R1030W	INPPL1_uc001osg.2_Missense_Mutation_p.R788W	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	1030	Pro-rich.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						TGGGCACCACCGGCACCCTCG	0.642000													19	87					0	0	0.043863	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73021440	73021440	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:73021440T>C	uc001otu.2	+	1	1778	c.1757T>C	c.(1756-1758)ATC>ACC	p.I586T		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	586					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CTGCCCCTCATCGTCCAGGAC	0.647000													10	67					0	0	0.080935	0	0
GDPD4	220032	broad.mit.edu	37	11	76944148	76944148	+	Silent	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:76944148G>C	uc001oyf.2	-	13	1562	c.1311C>G	c.(1309-1311)GCC>GCG	p.A437A		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	437	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						TGGAGCACCAGGCCAGTGAGA	0.468000													6	69					0	0	0.029380	0	0
PCF11	51585	broad.mit.edu	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:82877690A>G	uc001ozx.3	+	5	2096	c.1751A>G	c.(1750-1752)AAT>AGT	p.N584S	PCF11_uc010rsu.1_Missense_Mutation_p.N584S	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	584					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						CCAAAGGAGAATGTAGAAAAC	0.393000													16	78					0	0	0.033300	0	0
MMP10	4319	broad.mit.edu	37	11	102643707	102643707	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:102643707T>C	uc001phg.1	-	8	1119	c.1097A>G	c.(1096-1098)GAG>GGG	p.E366G		NM_002425	NP_002416	P09238	MMP10_HUMAN	matrix metalloproteinase 10 preproprotein	366	Hemopexin-like 2.				collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			kidney(1)|lung(1)|breast(1)|central_nervous_system(1)	4	all_epithelial(12;0.00961)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0303)|Lung(13;0.0828)|all cancers(10;0.116)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0145)		TGCTTGTACCTCATTTCCTCT	0.363000													3	228					0	0	0.115264	0	0
CASP4	837	broad.mit.edu	37	11	104825523	104825523	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:104825523C>T	uc001pid.1	-	2	286	c.213G>A	c.(211-213)ATG>ATA	p.M71I	CASP4_uc001pib.1_Missense_Mutation_p.M15I|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Missense_Mutation_p.M71I|CASP4_uc010ruy.1_Missense_Mutation_p.M71I	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	71	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		TTTGAAGAAGCATTTGTCCTG	0.353000													32	164					0	0	0.050027	0	0
CLDN25	644672	broad.mit.edu	37	11	113651037	113651037	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:113651037A>G	uc009yyw.1	+	1	520	c.520A>G	c.(520-522)ATT>GTT	p.I174V		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	174	Helical; (Potential).					integral to membrane|tight junction	structural molecule activity				0						GGCTGCTGGTATTTTCCTGGC	0.557000													11	55					0	0	0.093190	0	0
FKBP4	2288	broad.mit.edu	37	12	2909578	2909578	+	Silent	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:2909578T>G	uc001qkz.2	+	8	1065	c.867T>G	c.(865-867)GCT>GCG	p.A289A		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	289	TPR 1.|Interaction with tubulin (By similarity).				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	ACAAGCAAGCTTTACTACAGT	0.483000													8	38					0	0	0.058154	0	0
CHD4	1108	broad.mit.edu	37	12	6707540	6707540	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:6707540G>A	uc001qpo.2	-	11	1698	c.1534C>T	c.(1534-1536)CAG>TAG	p.Q512*	CHD4_uc001qpn.2_Nonsense_Mutation_p.Q505*|CHD4_uc001qpp.2_Nonsense_Mutation_p.Q509*	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	512	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GATGGTGGCTGACCCCACTTC	0.547000													36	192					0	0	0.069456	0	0
RASSF8	11228	broad.mit.edu	37	12	26217472	26217472	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:26217472A>T	uc001rgx.2	+	3	366	c.145A>T	c.(145-147)ACT>TCT	p.T49S	RASSF8_uc001rgy.2_Missense_Mutation_p.T49S|RASSF8_uc001rgz.2_Missense_Mutation_p.T49S|RASSF8_uc009zjd.1_Missense_Mutation_p.T49S|RASSF8_uc009zje.1_Missense_Mutation_p.T49S	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	49	Ras-associating.				signal transduction						0	Colorectal(261;0.0847)					ATGGAGAGATACTGAAAGACA	0.388000													27	116					0	0	0.099896	0	0
LRRK2	120892	broad.mit.edu	37	12	40681240	40681240	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:40681240A>T	uc001rmg.3	+	20	2709	c.2588A>T	c.(2587-2589)AAT>ATT	p.N863I	LRRK2_uc001rmh.1_Missense_Mutation_p.N485I	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	863					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGCGATGGAAATTTTTCTGAA	0.398000													20	75					0	0	0.055883	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42858293	42858293	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:42858293G>A	uc010skv.1	-	7	1830	c.1543C>T	c.(1543-1545)CAG>TAG	p.Q515*	PRICKLE1_uc001rnl.2_Nonsense_Mutation_p.Q515*|PRICKLE1_uc010skw.1_Nonsense_Mutation_p.Q515*|PRICKLE1_uc001rnm.2_Nonsense_Mutation_p.Q515*	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	515					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TCATACCACTGTGTTTCATCA	0.488000													27	118					0	0	0.091800	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858498	43858498	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:43858498C>T	uc010skx.1	-	10	1405	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	469	Disintegrin.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TATATTTCTTCATCTGGTTTG	0.403000													8	86					0	0	0.038147	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46318586	46318586	+	Silent	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:46318586T>A	uc001rox.2	-	12	4118	c.3831A>T	c.(3829-3831)CCA>CCT	p.P1277P	SFRS2IP_uc001row.2_Silent_p.P962P	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1277	Pro-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GTGGTGGTGGTGGTAGTCCCT	0.493000													15	62					0	0	0.033300	0	0
MBD6	114785	broad.mit.edu	37	12	57922959	57922959	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:57922959C>T	uc001soj.1	+	13	3178	c.2954C>T	c.(2953-2955)CCT>CTT	p.P985L	MBD6_uc001sok.1_Missense_Mutation_p.P853L|MBD6_uc001sol.1_RNA	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	985						chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						GTCCCTCTGCCTCCCCGGGCC	0.562000													17	54					0	0	0.049695	0	0
USP15	9958	broad.mit.edu	37	12	62795034	62795034	+	Silent	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:62795034T>A	uc001src.1	+	21	2751	c.2742T>A	c.(2740-2742)ACT>ACA	p.T914T	USP15_uc001srb.1_Silent_p.T885T	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	914					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		GTGTCTCCACTGCATCTGAAG	0.323000													13	43					0	0	0.146539	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105433493	105433493	+	Silent	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:105433493C>T	uc001tlc.2	-	17	2170	c.2043G>A	c.(2041-2043)AAG>AAA	p.K681K	ALDH1L2_uc009zuo.2_Silent_p.K136K|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	681	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						ACCAATACCTCTTCATGATCT	0.388000													16	83					0	0	0.146539	0	0
PXN	5829	broad.mit.edu	37	12	120653399	120653399	+	Silent	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:120653399G>A	uc001txt.2	-	7	1028	c.897C>T	c.(895-897)GGC>GGT	p.G299G	PXN_uc001txu.2_Silent_p.G63G|PXN_uc001txv.2_Intron|PXN_uc001txx.2_Intron|PXN_uc001txy.2_Intron|PXN_uc001txz.2_RNA	NM_001080855	NP_001074324	P49023	PAXI_HUMAN	paxillin isoform 1	299					cell junction assembly|cell-matrix adhesion|cellular response to reactive oxygen species|epidermal growth factor receptor signaling pathway|growth hormone receptor signaling pathway|muscle contraction|signal complex assembly	cytoplasm|focal adhesion|lamellipodium|microtubule associated complex	beta-catenin binding|vinculin binding|zinc ion binding			ovary(1)|breast(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGCTCCGCCCGCCGTCCCGAG	0.672000													13	38					0	0	0.119110	0	0
OR4N5	390437	broad.mit.edu	37	14	20612708	20612708	+	Missense_Mutation	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:20612708T>G	uc010tla.1	+	1	814	c.814T>G	c.(814-816)TCT>GCT	p.S272A		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		CAAGGTAGTTTCTCTTTTCCA	0.418000													72	316					0	0	0.139131	0	0
C14orf182	283551	broad.mit.edu	37	14	50472313	50472313	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:50472313T>C	uc001wxi.1	-	1	1926	c.205A>G	c.(205-207)AGG>GGG	p.R69G		NM_001012706	NP_001012724	A1A4T8	CN182_HUMAN	hypothetical protein LOC283551	69											0						CACACGGACCTTGGAGGCACA	0.537000													20	109					0	0	0.055883	0	0
MLH3	27030	broad.mit.edu	37	14	75516130	75516130	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:75516130T>A	uc001xrd.1	-	2	445	c.229A>T	c.(229-231)AAA>TAA	p.K77*	MLH3_uc001xre.1_Nonsense_Mutation_p.K77*|MLH3_uc010tuy.1_RNA	NM_001040108	NP_001035197	Q9UHC1	MLH3_HUMAN	mutL homolog 3 isoform 1	77					mismatch repair|reciprocal meiotic recombination	chiasma|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|mismatched DNA binding|protein binding|satellite DNA binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00688)		GAGTGGCATTTACTGGTGAAA	0.448000								MMR					15	73					0	0	0.132662	0	0
C14orf159	80017	broad.mit.edu	37	14	91642321	91642321	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:91642321T>A	uc001xzb.2	+	9	1404	c.636T>A	c.(634-636)GAT>GAA	p.D212E	C14orf159_uc010atv.1_RNA|C14orf159_uc001xyy.2_Missense_Mutation_p.D217E|C14orf159_uc001xyx.2_Missense_Mutation_p.D200E|C14orf159_uc001xyw.2_Missense_Mutation_p.D217E|C14orf159_uc001xzc.2_Missense_Mutation_p.D212E|C14orf159_uc001xza.2_Missense_Mutation_p.D217E|C14orf159_uc001xyv.2_Missense_Mutation_p.D217E|C14orf159_uc001xyz.2_Missense_Mutation_p.D88E|C14orf159_uc001xze.2_Missense_Mutation_p.D212E	NM_001102366	NP_001095836	Q7Z3D6	CN159_HUMAN	hypothetical protein LOC80017 isoform a	212						mitochondrion				central_nervous_system(2)|ovary(1)	3		all_cancers(154;0.0191)|all_epithelial(191;0.241)		Epithelial(152;0.141)|OV - Ovarian serous cystadenocarcinoma(161;0.207)		CCTACGGGGATGCCATGGTGT	0.527000													14	70					0	0	0.033300	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102323022	102323022	+	Splice_Site	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:102323022G>A	uc001yko.2	+	2	235	c.95_splice	c.e2-1	p.D32_splice	PPP2R5C_uc010txr.1_Splice_Site_p.D63_splice|PPP2R5C_uc001ykk.2_Splice_Site_p.D87_splice|PPP2R5C_uc010txt.1_Splice_Site_p.D22_splice|PPP2R5C_uc001ykn.2_Splice_Site_p.D32_splice|PPP2R5C_uc001ykp.2_Splice_Site_p.D32_splice|PPP2R5C_uc010txs.1_Splice_Site_p.D22_splice	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein						DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						CTGCTTTTCAGATGTTCCTCC	0.353000													49	220					0	0	0.139131	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409159	105409159	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:105409159G>A	uc010axc.1	-	7	12749	c.12629C>T	c.(12628-12630)GCC>GTC	p.A4210V	AHNAK2_uc001ypx.2_Missense_Mutation_p.A4110V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4210						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TTTGAGGCCGGCTCCCTTGGG	0.642000													4	197					0	0	0.009096	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413291	105413291	+	Nonsense_Mutation	SNP	C	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:105413291C>A	uc010axc.1	-	7	8617	c.8497G>T	c.(8497-8499)GAG>TAG	p.E2833*	AHNAK2_uc001ypx.2_Nonsense_Mutation_p.E2733*	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2833						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ACCGAGGCCTCGATGGACTTG	0.582000													5	345					0.00198382	0.00212757	0.029380	1	0
SCG3	29106	broad.mit.edu	37	15	51993377	51993377	+	Silent	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr15:51993377A>G	uc002abh.2	+	10	1551	c.1143A>G	c.(1141-1143)GGA>GGG	p.G381G	SCG3_uc010ufz.1_Silent_p.G149G	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	381					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		AGGAATATGGAAGCTTGAAGG	0.413000													21	74					0	0	0.049695	0	0
SRRM2	23524	broad.mit.edu	37	16	2807812	2807812	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:2807812A>T	uc002crk.2	+	4	930	c.381A>T	c.(379-381)TTA>TTT	p.L127F	SRRM2_uc002crj.1_Missense_Mutation_p.L31F|SRRM2_uc002crl.1_Missense_Mutation_p.L127F|SRRM2_uc010bsu.1_Missense_Mutation_p.L31F	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	127						Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						tggcagaattaaatgagaaga	0.264000													31	161					0	0	0.125774	0	0
CLEC16A	23274	broad.mit.edu	37	16	11217780	11217780	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:11217780G>A	uc002dao.2	+	21	2680	c.2450G>A	c.(2449-2451)CGC>CAC	p.R817H	CLEC16A_uc002dan.3_Missense_Mutation_p.R799H|CLEC16A_uc002dap.2_5'Flank	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	817										ovary(1)|central_nervous_system(1)	2						CAGGCAAGGCGCATGAAGATG	0.587000													3	20					0	0	0.115264	0	0
XPO6	23214	broad.mit.edu	37	16	28157419	28157419	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:28157419T>A	uc002dpa.1	-	9	1831	c.1330A>T	c.(1330-1332)AAC>TAC	p.N444Y	XPO6_uc002dpb.1_Missense_Mutation_p.N430Y|XPO6_uc010vcp.1_Missense_Mutation_p.N444Y	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	444					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						GTTTACCTGTTGAGAACTGCT	0.398000													69	177					0	0	0.139131	0	0
MVP	9961	broad.mit.edu	37	16	29848119	29848119	+	Missense_Mutation	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:29848119T>G	uc002dui.2	+	7	833	c.749T>G	c.(748-750)CTG>CGG	p.L250R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.L250R|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	250	MVP 5.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GAGGAGTGGCTGGTAACAGTG	0.642000													4	52					0	0	0.021553	0	0
ZNF646	9726	broad.mit.edu	37	16	31090723	31090723	+	Silent	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:31090723G>A	uc002eap.2	+	2	3367	c.3078G>A	c.(3076-3078)GAG>GAA	p.E1026E		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1026					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						AGTCTCAAGAGGGAGCAGGCA	0.587000													27	163					0	0	0.116897	0	0
HAS3	3038	broad.mit.edu	37	16	69143465	69143465	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:69143465T>A	uc010cfh.2	+	2	391	c.167T>A	c.(166-168)CTG>CAG	p.L56Q	HAS3_uc002ewk.2_Missense_Mutation_p.L56Q|HAS3_uc010vlk.1_Missense_Mutation_p.L56Q|HAS3_uc002ewl.2_Missense_Mutation_p.L56Q	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	56	Helical; Name=2; (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		GGCCTGCACCTGCTCATTCAG	0.657000													11	69					0	0	0.093190	0	0
SLC38A8	146167	broad.mit.edu	37	16	84063153	84063153	+	Silent	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:84063153A>G	uc002fhg.1	-	5	636	c.636T>C	c.(634-636)CCT>CCC	p.P212P		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	212					amino acid transport|sodium ion transport	integral to membrane					0						TCCAGGAGGCAGGGCTGTAAA	0.493000													25	44					0	0	0.091800	0	0
TMEM220	388335	broad.mit.edu	37	17	10626593	10626593	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr17:10626593G>C	uc002gmx.2	-	5	819	c.341C>G	c.(340-342)TCC>TGC	p.S114C	TMEM220_uc002gmy.2_Missense_Mutation_p.S104C	NM_001004313	NP_001004313	Q6QAJ8	TM220_HUMAN	transmembrane protein 220	114	Helical; (Potential).					integral to membrane					0						TTACTTTGAGGAACTGTGGCA	0.269000													15	87					0	0	0.033300	0	0
FBXW10	10517	broad.mit.edu	37	17	18653137	18653137	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr17:18653137T>A	uc002guk.2	+	3	1005	c.773T>A	c.(772-774)TTG>TAG	p.L258*	FBXW10_uc002guj.2_Nonsense_Mutation_p.L258*|FBXW10_uc002gul.2_Nonsense_Mutation_p.L258*|FBXW10_uc010cqh.1_Nonsense_Mutation_p.L258*	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	258										ovary(1)	1						TGCAATCTATTGGTTGACCTG	0.468000													29	139					0	0	0.104719	0	0
DHX58	79132	broad.mit.edu	37	17	40262859	40262859	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr17:40262859T>A	uc002hyw.3	-	5	666	c.443A>T	c.(442-444)CAG>CTG	p.Q148L	DHX58_uc002hyv.3_RNA|DHX58_uc010wgf.1_Missense_Mutation_p.Q141L	NM_024119	NP_077024	Q96C10	DHX58_HUMAN	RNA helicase LGP2	148	Helicase ATP-binding.				innate immune response	cytoplasm	ATP binding|DNA binding|helicase activity|protein binding|RNA binding|zinc ion binding				0		all_cancers(22;9.73e-07)|all_epithelial(22;3.58e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TTCTAGGTACTGGCTCATGAT	0.612000													19	95					0	0	0.062417	0	0
NPEPPS	9520	broad.mit.edu	37	17	45699223	45699224	+	Nonsense_Mutation	DNP	GC	TT	TT			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr17:45699223_45699224GC>TT	uc002ilr.3	+	23	2920_2921	c.2697_2698GC>TT	c.(2695-2700)AAGCGA>AATTGA	p.899_900KR>N*	NPEPPS_uc010wkt.1_Nonsense_Mutation_p.895_896KR>N*|NPEPPS_uc010wku.1_Nonsense_Mutation_p.863_864KR>N*|NPEPPS_uc010wkv.1_Nonsense_Mutation_p.453_454KR>N*	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	899_900					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						CCTGGCTAAAGCGAGATGCTGA	0.540000													5	45					0	0	0.115264	0	0
QRICH2	84074	broad.mit.edu	37	17	74303551	74303551	+	Missense_Mutation	SNP	C	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr17:74303551C>G	uc002jrd.1	-	1	211	c.31G>C	c.(31-33)GCC>CCC	p.A11P	QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	11							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						CTCACCCTGGCAAAGCTGAGC	0.701000													3	35					0	0	0.009096	0	0
MYO5B	4645	broad.mit.edu	37	18	47375980	47375980	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr18:47375980T>A	uc002leb.2	-	32	4560	c.4272A>T	c.(4270-4272)AAA>AAT	p.K1424N	MYO5B_uc002ldz.2_5'UTR|MYO5B_uc002lea.2_Missense_Mutation_p.K539N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1424	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCAGTTGCTTTTTGAGCTTCC	0.483000													55	356					0	0	0.139131	0	0
FAM108A1	81926	broad.mit.edu	37	19	1880041	1880041	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:1880041A>G	uc002lug.2	-	3	812	c.406T>C	c.(406-408)TCC>CCC	p.S136P	FAM108A1_uc002lud.2_Missense_Mutation_p.S118P|FAM108A1_uc002lue.2_Missense_Mutation_p.S136P|FAM108A1_uc002luf.2_Missense_Mutation_p.S187P	NM_001130111	NP_001123583	Q96GS6	F18A1_HUMAN	hypothetical protein LOC81926 isoform 2	136						extracellular region	hydrolase activity				0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGAGGCGGGAGCCCAGGCCA	0.632000													4	31					0	0	0.021553	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8665858	8665858	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:8665858T>C	uc002mkj.1	-	6	1038	c.764A>G	c.(763-765)CAC>CGC	p.H255R	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	255	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CCGGCGCCCGTGATAGGCCAC	0.612000													3	94					0	0	0.115264	0	0
EPOR	2057	broad.mit.edu	37	19	11489162	11489162	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:11489162A>G	uc002mrj.1	-	8	1161	c.1025T>C	c.(1024-1026)ATG>ACG	p.M342T	EPOR_uc002mrh.2_Missense_Mutation_p.M1T|EPOR_uc002mri.2_Missense_Mutation_p.M169T|EPOR_uc002mrk.1_Missense_Mutation_p.M169T|EPOR_uc002mrl.1_RNA|EPOR_uc010xlx.1_RNA|EPOR_uc010xly.1_Missense_Mutation_p.M169T	NM_000121	NP_000112	P19235	EPOR_HUMAN	erythropoietin receptor precursor	342	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	erythropoietin receptor activity|identical protein binding			ovary(1)	1					Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	CACTGCCTGCATCGTCCCCCA	0.627000													14	45					0	0	0.119110	0	0
ZNF254	9534	broad.mit.edu	37	19	24309780	24309780	+	Silent	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:24309780A>G	uc002nru.2	+	4	1112	c.978A>G	c.(976-978)GAA>GAG	p.E326E	ZNF254_uc010xrk.1_Silent_p.E241E	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	326	C2H2-type 5.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				AGTGTGAAGAATGTGGCAAAG	0.388000													12	69					0	0	0.080935	0	0
UBA2	10054	broad.mit.edu	37	19	34924279	34924279	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:34924279G>A	uc002nvk.2	+	4	390	c.320G>A	c.(319-321)CGA>CAA	p.R107Q	UBA2_uc010xrx.1_Intron|UBA2_uc002nvl.2_Missense_Mutation_p.R11Q	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	107					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			GAATTTTTCCGACAGTTTATA	0.308000													29	131					0	0	0.045705	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260723	42260723	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:42260723G>A	uc002orm.2	+	2	429	c.280G>A	c.(280-282)GCA>ACA	p.A94T		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	94	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CCCAGGGCCCGCATACAGTGG	0.463000													5	300					0	0	0.021553	0	0
LAIR1	3903	broad.mit.edu	37	19	54872527	54872527	+	Silent	SNP	C	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:54872527C>A	uc002qfk.1	-	3	670	c.360G>T	c.(358-360)GTG>GTT	p.V120V	LAIR1_uc002qfl.1_Silent_p.V120V|LAIR1_uc002qfm.1_Silent_p.V119V|LAIR1_uc002qfn.1_Silent_p.V119V|LAIR1_uc010yex.1_Silent_p.V113V|LAIR1_uc002qfo.2_Silent_p.V102V	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	120	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		CCTCACCTTTCACCAGCAGCT	0.582000													31	130					3.99451e-17	4.51288e-17	0.144211	1	0
ZNF773	374928	broad.mit.edu	37	19	58018029	58018029	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:58018029G>A	uc002qox.2	+	4	706	c.566G>A	c.(565-567)AGG>AAG	p.R189K	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Missense_Mutation_p.R188K|ZNF773_uc002qoz.2_Intron	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	189					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		GCTGGAAAAAGGCATTACAAA	0.473000													5	43					0	0	0.014758	0	0
ZNF773	374928	broad.mit.edu	37	19	58018032	58018032	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr19:58018032A>G	uc002qox.2	+	4	709	c.569A>G	c.(568-570)CAT>CGT	p.H190R	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Missense_Mutation_p.H189R|ZNF773_uc002qoz.2_Intron	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		GGAAAAAGGCATTACAAATGC	0.473000													5	46					0	0	0.014758	0	0
PSME4	23198	broad.mit.edu	37	2	54135515	54135515	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:54135515T>C	uc002rxp.2	-	24	2782	c.2726A>G	c.(2725-2727)CAT>CGT	p.H909R	PSME4_uc010yop.1_Missense_Mutation_p.H795R|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.H284R|PSME4_uc010fbv.1_Missense_Mutation_p.H53R	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	909					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GTCAAATTCATGCTTGTGAGA	0.338000													7	34					0	0	0.038147	0	0
PCBP1	5093	broad.mit.edu	37	2	70314950	70314950	+	Silent	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:70314950A>G	uc002sgf.2	+	1	366	c.75A>G	c.(73-75)GTA>GTG	p.V25V	ASPRV1_uc002sga.2_5'Flank|uc002sgb.1_5'Flank|uc002sgd.2_5'Flank|uc002sge.1_5'Flank	NM_006196	NP_006187	Q15365	PCBP1_HUMAN	poly(rC) binding protein 1	25	KH 1.				nuclear mRNA splicing, via spliceosome	cytoplasm|nucleoplasm|ribonucleoprotein complex	protein binding|RNA binding|single-stranded DNA binding				0						GAAAGGAAGTAGGAAGCATCA	0.567000													34	102					0	0	0.064281	0	0
WASH2P	375260	broad.mit.edu	37	2	114355129	114355129	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:114355129G>A	uc002tkh.2	+	4	564	c.506G>A	c.(505-507)CGC>CAC	p.R169H	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA|WASH2P_uc010fkz.1_RNA|WASH2P_uc002tkf.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						GAGTCCATCCGCCAAGCTGGG	0.522000													3	20					0	0	0.014758	0	0
SCN1A	6323	broad.mit.edu	37	2	166915109	166915109	+	Silent	SNP	C	T	T	rs121917959		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:166915109C>T	uc010zcz.1	-	2	372	c.354G>A	c.(352-354)AGG>AGA	p.R118R	SCN1A_uc002udo.3_5'Flank|SCN1A_uc010fpk.2_5'Flank	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	118	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TAGCTATTTTCCTAAGAGGAT	0.338000													13	67					0	0	0.093190	0	0
ZNF385B	151126	broad.mit.edu	37	2	180311412	180311412	+	Silent	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:180311412T>G	uc002unn.3	-	7	1360	c.756A>C	c.(754-756)ACA>ACC	p.T252T	ZNF385B_uc002unj.2_Silent_p.T150T|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Silent_p.T149T|ZNF385B_uc002unm.2_Silent_p.T176T	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	252						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			GTGGCAGGGGTGTTGTGCCAG	0.458000													7	165					0	0	0.132662	0	0
SSFA2	6744	broad.mit.edu	37	2	182765433	182765433	+	Silent	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:182765433T>C	uc002uoi.2	+	7	836	c.514T>C	c.(514-516)TTG>CTG	p.L172L	SSFA2_uc002uoh.2_Silent_p.L172L|SSFA2_uc002uoj.2_Silent_p.L172L|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Silent_p.L19L|SSFA2_uc002uol.2_Silent_p.L19L	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	172						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TGTTTCAGAATTGTTGGAACT	0.299000													15	72					0	0	0.146539	0	0
AOX1	316	broad.mit.edu	37	2	201478584	201478584	+	Silent	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:201478584C>T	uc002uvx.2	+	15	1607	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	AOX1_uc010zhf.1_Silent_p.S58S|AOX1_uc010fsu.2_5'UTR	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	502					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	ATGAAGTCTCCCTTTTGGGCT	0.478000													17	55					0	0	0.146539	0	0
COL4A4	1286	broad.mit.edu	37	2	227872134	227872134	+	Silent	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:227872134C>T	uc010zlt.1	-	47	5634	c.4980G>A	c.(4978-4980)CAG>CAA	p.Q1660Q		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1660	Collagen IV NC1.			LQ -> FE (in Ref. 5; BAA04214).	axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CAGAGGAAAACTGCAAGTCTG	0.517000													76	426					0	0	0.139131	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652351	234652351	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:234652351G>A	uc002vuz.2	-	1	311	c.212C>T	c.(211-213)GCG>GTG	p.A71V	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	71					protein folding		heat shock protein binding|unfolded protein binding				0						CTCCGCCCCCGCCTCGCCATA	0.627000													35	122					0	0	0.086207	0	0
DNAJB3	414061	broad.mit.edu	37	2	234652372	234652372	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:234652372A>G	uc002vuz.2	-	1	290	c.191T>C	c.(190-192)ATC>ACC	p.I64T	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron	NM_001001394	NP_001001394	Q8WWF6	DNJB3_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 3	64	J.				protein folding		heat shock protein binding|unfolded protein binding				0						GCGGTCATAGATATCGCGTTT	0.632000													36	169					0	0	0.059317	0	0
COL6A3	1293	broad.mit.edu	37	2	238234213	238234213	+	Silent	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:238234213A>T	uc002vwl.2	-	43	9768	c.9483T>A	c.(9481-9483)GTT>GTA	p.V3161V	COL6A3_uc002vwo.2_Silent_p.V2955V|COL6A3_uc010znj.1_Silent_p.V2554V|COL6A3_uc002vwj.2_Silent_p.V542V	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	3161	Nonhelical region.|BPTI/Kunitz inhibitor.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CAGGAGCGCAAACCTTTTCAC	0.383000													45	152					0	0	0.139131	0	0
PER2	8864	broad.mit.edu	37	2	239184526	239184526	+	Silent	SNP	A	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:239184526A>C	uc002vyc.2	-	4	543	c.306T>G	c.(304-306)TCT>TCG	p.S102S	PER2_uc010znv.1_Silent_p.S102S|PER2_uc010znw.1_Silent_p.S102S|PER2_uc010fyx.1_Silent_p.S102S	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	102					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		CCACTTTCGAAGACTGGTCGC	0.502000													18	83					0	0	0.038395	0	0
ASXL1	171023	broad.mit.edu	37	20	31015986	31015986	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr20:31015986A>G	uc002wxs.2	+	4	734	c.308A>G	c.(307-309)GAG>GGG	p.E103G	ASXL1_uc002wxr.1_RNA|ASXL1_uc010geb.2_Missense_Mutation_p.E45G	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	103					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GAGGAGCCAGAGGACACGGCT	0.532000			F|N|Mis		MDS|CMML								9	86					0	0	0.105934	0	0
LBP	3929	broad.mit.edu	37	20	36989402	36989402	+	Silent	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr20:36989402T>G	uc002xic.1	+	6	668	c.633T>G	c.(631-633)CCT>CCG	p.P211P		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	211					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				ATCTACAGCCTTATCTCCAAA	0.428000													21	139					0	0	0.083992	0	0
ZNF831	128611	broad.mit.edu	37	20	57769662	57769662	+	Silent	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr20:57769662G>A	uc002yan.2	+	1	3588	c.3588G>A	c.(3586-3588)GCG>GCA	p.A1196A		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1196						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CTCTGCCCGCGGAGCAGAAGG	0.637000													3	39					0	0	0.115264	0	0
TPTE	7179	broad.mit.edu	37	21	10916473	10916473	+	Missense_Mutation	SNP	C	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr21:10916473C>A	uc002yip.1	-	20	1541	c.1173G>T	c.(1171-1173)AAG>AAT	p.K391N	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.K373N|TPTE_uc002yir.1_Missense_Mutation_p.K353N|TPTE_uc010gkv.1_Missense_Mutation_p.K253N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	391	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAACATATCTCTTCTGAAAAG	0.338000													4	140					0.00909568	0.00961543	0.009096	1	0
COL18A1	80781	broad.mit.edu	37	21	46902710	46902710	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr21:46902710G>A	uc011afs.1	+	14	2942	c.2921G>A	c.(2920-2922)GGT>GAT	p.G974D	COL18A1_uc002zhg.2_Missense_Mutation_p.G559D|COL18A1_uc002zhi.2_Missense_Mutation_p.G739D	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	974	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		TCCGTACAGGGTGAAGCAGGC	0.592000													13	67					0	0	0.119110	0	0
SLC2A11	66035	broad.mit.edu	37	22	24226511	24226511	+	Silent	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr22:24226511C>T	uc002zyn.3	+	11	1284	c.1185C>T	c.(1183-1185)GCC>GCT	p.A395A	SLC2A11_uc002zym.3_Silent_p.A402A|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Silent_p.A393A|SLC2A11_uc002zyp.3_Silent_p.A398A	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	395	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						GGATCCTGGCCACAGAGCTGT	0.652000													10	50					0	0	0.069234	0	0
MCHR1	2847	broad.mit.edu	37	22	41076973	41076973	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr22:41076973A>T	uc003ayz.2	+	2	578	c.310A>T	c.(310-312)AGC>TGC	p.S104C	MCHR1_uc003aza.2_5'UTR	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	104	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						TCGCACGGGGAGCATCTCCTA	0.567000													12	63					0	0	0.080935	0	0
MEI1	150365	broad.mit.edu	37	22	42149973	42149973	+	Missense_Mutation	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr22:42149973T>G	uc003baz.1	+	17	1899	c.1874T>G	c.(1873-1875)GTG>GGG	p.V625G	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_5'UTR|MEI1_uc003bbc.1_5'UTR|MEI1_uc010gym.1_5'UTR	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	625							binding			central_nervous_system(1)|skin(1)	2						CTAAACCAGGTGTGTTCCAAT	0.458000													12	71					0	0	0.105934	0	0
C22orf26	55267	broad.mit.edu	37	22	46449683	46449683	+	Silent	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr22:46449683G>A	uc003bgq.1	-	1	342	c.291C>T	c.(289-291)CAC>CAT	p.H97H	LOC150381_uc011aqw.1_5'Flank|LOC400931_uc003bgr.3_5'Flank	NM_018280	NP_060750	Q9NV39	CV026_HUMAN	hypothetical protein LOC55267	97											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.0784)|LUAD - Lung adenocarcinoma(64;0.247)		GCCTGGCACCGTGCCAGGCTC	0.751000													2	1					0	0	0.115264	0	0
CELSR1	9620	broad.mit.edu	37	22	46790151	46790151	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr22:46790151A>T	uc003bhw.1	-	14	5852	c.5852T>A	c.(5851-5853)CTT>CAT	p.L1951H	CELSR1_uc011arc.1_Missense_Mutation_p.L272H	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1951	Extracellular (Potential).|EGF-like 7; calcium-binding.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GGGGCACGGAAGGTCGAGTCT	0.567000													8	37					0	0	0.058154	0	0
NGLY1	55768	broad.mit.edu	37	3	25773885	25773885	+	Silent	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr3:25773885A>T	uc003cdl.2	-	9	1458	c.1350T>A	c.(1348-1350)CCT>CCA	p.P450P	NGLY1_uc010hfg.2_Silent_p.P432P|NGLY1_uc003cdm.2_Silent_p.P450P|NGLY1_uc011awo.1_Silent_p.P408P|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	450					glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						CTCCAGGTTTAGGGGTTTTGG	0.418000													40	70					0	0	0.124865	0	0
NDUFB5	4711	broad.mit.edu	37	3	179334831	179334831	+	Missense_Mutation	SNP	A	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr3:179334831A>C	uc003fkc.2	+	4	370	c.341A>C	c.(340-342)AAG>ACG	p.K114T	NDUFB5_uc003fkd.2_RNA|NDUFB5_uc003fke.2_Missense_Mutation_p.K62T	NM_002492	NP_002483	O43674	NDUB5_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	114					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			skin(1)	1	all_cancers(143;9.62e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.18)		NADH(DB00157)	GAATATTATAAGGTTTGTATA	0.338000													22	40					0	0	0.091800	0	0
ABCC5	10057	broad.mit.edu	37	3	183706444	183706444	+	Missense_Mutation	SNP	C	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr3:183706444C>T	uc003fmg.2	-	4	524	c.359G>A	c.(358-360)CGT>CAT	p.R120H	ABCC5_uc011bqt.1_Translation_Start_Site|ABCC5_uc010hxl.2_Missense_Mutation_p.R120H|ABCC5_uc003fmh.2_Missense_Mutation_p.R120H|ABCC5_uc010hxm.2_RNA|ABCC5_uc010hxn.2_Missense_Mutation_p.R120H|ABCC5_uc010hxo.2_Missense_Mutation_p.R120H	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	120						integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GTGGGCCACACGGGCCAGAGA	0.527000													22	52					0	0	0.076483	0	0
ANKRD17	26057	broad.mit.edu	37	4	74014608	74014608	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:74014608T>A	uc003hgp.2	-	8	1606	c.1489A>T	c.(1489-1491)AAT>TAT	p.N497Y	ANKRD17_uc003hgo.2_Missense_Mutation_p.N384Y|ANKRD17_uc003hgq.2_Missense_Mutation_p.N497Y|ANKRD17_uc003hgr.2_Missense_Mutation_p.N497Y|ANKRD17_uc011cbd.1_Missense_Mutation_p.N126Y	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	497					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CCTTCATCATTGACCTCTTCC	0.443000													12	69					0	0	0.093190	0	0
SCD5	79966	broad.mit.edu	37	4	83719607	83719607	+	Missense_Mutation	SNP	C	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:83719607C>G	uc003hna.2	-	1	404	c.84G>C	c.(82-84)GAG>GAC	p.E28D	SCD5_uc003hnb.3_Missense_Mutation_p.E28D|SCD5_uc003hnc.2_Missense_Mutation_p.E28D	NM_001037582	NP_001032671	Q86SK9	SCD5_HUMAN	stearoyl-CoA desaturase 5 isoform a	28					fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity			ovary(1)	1		Colorectal(4;0.0323)|Hepatocellular(203;0.115)				CGCCGCCGCCCTCAGAGCTTT	0.692000													5	22					0	0	0.014758	0	0
GUCY1B3	2983	broad.mit.edu	37	4	156725753	156725753	+	Missense_Mutation	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:156725753A>G	uc003ipc.2	+	12	1730	c.1563A>G	c.(1561-1563)ATA>ATG	p.I521M	GUCY1B3_uc011cio.1_Missense_Mutation_p.I543M|GUCY1B3_uc011cip.1_Missense_Mutation_p.I501M|GUCY1B3_uc003ipd.2_Missense_Mutation_p.I449M|GUCY1B3_uc010iqf.2_Missense_Mutation_p.I488M|GUCY1B3_uc010iqg.2_Missense_Mutation_p.I492M|GUCY1B3_uc011ciq.1_Missense_Mutation_p.I449M	NM_000857	NP_000848	Q02153	GCYB1_HUMAN	guanylate cyclase 1, soluble, beta 3	521	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble|intracellular membrane-bounded organelle	GTP binding|guanylate cyclase activity|receptor activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.148)		AGATAACAATAGGGATACACA	0.323000													16	120					0	0	0.043863	0	0
NEIL3	55247	broad.mit.edu	37	4	178243705	178243705	+	Silent	SNP	C	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:178243705C>G	uc003iut.2	+	2	366	c.249C>G	c.(247-249)CTC>CTG	p.L83L	NEIL3_uc010irs.2_Intron	NM_018248	NP_060718	Q8TAT5	NEIL3_HUMAN	nei endonuclease VIII-like 3	83					base-excision repair|nucleotide-excision repair	nucleus	bubble DNA binding|damaged DNA binding|DNA N-glycosylase activity|DNA-(apurinic or apyrimidinic site) lyase activity|double-stranded DNA binding|single-stranded DNA binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4		Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.164)		all cancers(43;1.96e-23)|Epithelial(43;2.52e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.89e-11)|GBM - Glioblastoma multiforme(59;9.49e-05)|Colorectal(24;0.00013)|COAD - Colon adenocarcinoma(29;0.000696)|STAD - Stomach adenocarcinoma(60;0.00308)|LUSC - Lung squamous cell carcinoma(193;0.0398)|READ - Rectum adenocarcinoma(43;0.191)		GGAAGGAGCTCTTTATGTACT	0.413000								BER_DNA_glycosylases					28	174					0	0	0.116897	0	0
CCDC110	256309	broad.mit.edu	37	4	186380443	186380443	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:186380443T>A	uc003ixu.3	-	6	1374	c.1298A>T	c.(1297-1299)AAT>ATT	p.N433I	CCDC110_uc003ixv.3_Missense_Mutation_p.N396I|CCDC110_uc011ckt.1_Missense_Mutation_p.N433I	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	433	Potential.					nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TTTTAGGTAATTCTGTAAGTA	0.318000													47	192					0	0	0.139131	0	0
PDZD2	23037	broad.mit.edu	37	5	31983432	31983432	+	Silent	SNP	C	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:31983432C>G	uc003jhl.2	+	3	1036	c.648C>G	c.(646-648)ACC>ACG	p.T216T	PDZD2_uc003jhm.2_Silent_p.T216T|PDZD2_uc011cnx.1_Silent_p.T42T	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	216					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGAAACGAACCAGAAAGTTTG	0.557000													26	92					0	0	0.091800	0	0
AGXT2	64902	broad.mit.edu	37	5	35026613	35026613	+	Missense_Mutation	SNP	A	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:35026613A>C	uc003jjf.2	-	8	851	c.772T>G	c.(772-774)TGC>GGC	p.C258G	AGXT2_uc003jje.1_5'Flank|AGXT2_uc011com.1_Missense_Mutation_p.C258G	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	258					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GCTTGGCAGCAGTCTGCAAAA	0.368000													7	66					0	0	0.029380	0	0
ISL1	3670	broad.mit.edu	37	5	50683584	50683584	+	Splice_Site	SNP	G	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:50683584G>T	uc003jor.2	+	3	1026	c.478_splice	c.e3+1	p.A160_splice		NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1						generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				CAAATGGCAGGTACTCCTCTG	0.637000													13	26					7.93312e-07	8.69705e-07	0.119110	1	0
ZNF366	167465	broad.mit.edu	37	5	71739940	71739940	+	Nonsense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:71739940G>C	uc003kce.1	-	5	2064	c.1878C>G	c.(1876-1878)TAC>TAG	p.Y626*		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	626					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GCTCCACCTCGTAGCAGTTAT	0.667000													53	257					0	0	0.139131	0	0
MCC	4163	broad.mit.edu	37	5	112458403	112458403	+	Silent	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:112458403A>T	uc003kqj.3	-	4	965	c.435T>A	c.(433-435)TCT>TCA	p.S145S	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Silent_p.S335S|MCC_uc011cwb.1_Silent_p.S145S|MCC_uc010jcd.1_Silent_p.S107S	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	145					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		TAACCATGGTAGACTGGTTTT	0.502000													5	53					0	0	0.021553	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222316	140222316	+	Silent	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:140222316G>C	uc003lhs.2	+	1	1410	c.1410G>C	c.(1408-1410)CCG>CCC	p.P470P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.P470P	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	470	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAACCCGCCGGGCTGCCACA	0.672000													14	81					0	0	0.132662	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142513635	142513635	+	Missense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:142513635T>A	uc011dbj.1	+	19	1837	c.1802T>A	c.(1801-1803)CTG>CAG	p.L601Q	ARHGAP26_uc003lmt.2_Missense_Mutation_p.L601Q|ARHGAP26_uc003lmw.2_Missense_Mutation_p.L601Q	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	601	Ser-rich.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GAGAGGCCCCTGACGCTCTTC	0.582000													28	132					0	0	0.116897	0	0
RBM27	54439	broad.mit.edu	37	5	145641187	145641187	+	Missense_Mutation	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:145641187T>G	uc003lnz.3	+	13	2174	c.2008T>G	c.(2008-2010)TTG>GTG	p.L670V	RBM27_uc003lny.2_Missense_Mutation_p.L615V	NM_018989	NP_061862	Q9P2N5	RBM27_HUMAN	RNA binding motif protein 27	670	RRM.				mRNA processing	cytoplasm|nuclear speck	nucleotide binding|RNA binding|zinc ion binding			central_nervous_system(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATTCGAGTCTTGTGGCATAG	0.478000													31	163					0	0	0.134883	0	0
CPEB4	80315	broad.mit.edu	37	5	173370039	173370039	+	Nonsense_Mutation	SNP	T	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr5:173370039T>G	uc003mcs.3	+	4	2675	c.1269T>G	c.(1267-1269)TAT>TAG	p.Y423*	CPEB4_uc010jju.1_Intron|CPEB4_uc010jjv.2_Nonsense_Mutation_p.Y406*|CPEB4_uc011dfg.1_Intron|CPEB4_uc003mct.3_Intron|CPEB4_uc003mcu.3_Intron	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	423							nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CAAGGACATATGGGCGAAGGA	0.348000													35	228					0	0	0.092188	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778274	31778274	+	Silent	SNP	G	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:31778274G>T	uc003nxh.2	-	2	1659	c.1476C>A	c.(1474-1476)GCC>GCA	p.A492A	HSPA1L_uc010jte.2_Silent_p.A492A	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	492					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TCTTGTCCGTGGCTGTGACAT	0.542000													34	149					5.09552e-08	5.62789e-08	0.045705	1	0
SLC39A7	7922	broad.mit.edu	37	6	33169242	33169242	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:33169242G>C	uc003odf.2	+	2	337	c.220G>C	c.(220-222)GGA>CGA	p.G74R	RXRB_uc003odb.2_5'Flank|RXRB_uc003odc.2_5'Flank|RXRB_uc003odd.2_5'Flank|RXRB_uc011dqr.1_5'Flank|RXRB_uc011dqs.1_5'Flank|RXRB_uc003ode.1_5'Flank|RXRB_uc011dqt.1_5'Flank|RXRB_uc011dqu.1_5'Flank|SLC39A7_uc003odg.2_Missense_Mutation_p.G74R|SLC39A7_uc011dqv.1_Intron|SLC39A7_uc003odh.2_5'Flank	NM_001077516	NP_001070984	Q92504	S39A7_HUMAN	solute carrier family 39, member 7	74	His-rich.					endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein binding|zinc ion transmembrane transporter activity			large_intestine(1)	1						CATCTGGCATGGACATACCCA	0.552000													19	60					0	0	0.049695	0	0
FIG4	9896	broad.mit.edu	37	6	110086287	110086287	+	Missense_Mutation	SNP	A	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:110086287A>T	uc003ptt.2	+	14	1721	c.1506A>T	c.(1504-1506)AAA>AAT	p.K502N	FIG4_uc011eau.1_Missense_Mutation_p.K225N	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	502	SAC.				cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		TGGTGGGAAAATGTGCTCTGG	0.393000													20	93					0	0	0.062417	0	0
TBP	6908	broad.mit.edu	37	6	170871082	170871082	+	Silent	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:170871082G>A	uc003qxt.2	+	3	490	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	TBP_uc003qxu.2_Silent_p.Q86Q|TBP_uc011ehf.1_Silent_p.Q66Q|TBP_uc011ehg.1_Silent_p.Q86Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	86	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcagcagcagcagcagc	0.199000													3	28					0	0	0.115264	0	0
AGR2	10551	broad.mit.edu	37	7	16837318	16837319	+	Splice_Site	DNP	AC	GA	GA			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:16837318_16837319AC>GA	uc003str.2	-	6	518	c.331_splice	c.e6-1	p.Y111_splice		NM_006408	NP_006399	O95994	AGR2_HUMAN	anterior gradient 2 homolog precursor						mucus secretion	endoplasmic reticulum|extracellular region	protein binding				0	Lung NSC(10;0.0376)|all_lung(11;0.0855)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		GTTGTTTCATACTAAAATAAAA	0.381000													12	38					0	0	0.115264	0	0
ABCB5	340273	broad.mit.edu	37	7	20778604	20778604	+	Splice_Site	SNP	A	G	G			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:20778604A>G	uc003suw.3	+	15	2079	c.1533_splice	c.e15-2	p.I511_splice	ABCB5_uc010kuh.2_Splice_Site_p.I956_splice	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5						regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATCTTTTGATAGAGTTTTTAC	0.393000													6	34					0	0	0.029380	0	0
SBDS	51119	broad.mit.edu	37	7	66459200	66459200	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:66459200T>C	uc003tvm.1	-	2	441	c.257A>G	c.(256-258)CAG>CGG	p.Q86R	TYW1_uc003tvn.2_5'Flank|TYW1_uc010lai.2_5'Flank	NM_016038	NP_057122	Q9Y3A5	SBDS_HUMAN	Shwachman-Bodian-Diamond syndrome protein	86					bone marrow development|bone mineralization|leukocyte chemotaxis|mature ribosome assembly|mitotic spindle stabilization|positive regulation of translation|ribosomal large subunit biogenesis|rRNA processing	cytoplasm|nucleolus|nucleoplasm|spindle pole	microtubule binding|ribosome binding|rRNA binding			ovary(1)	1						GTTACCCACCTGCTTACAGAT	0.378000			Gene Conversion			AML|MDS			Shwachman-Diamond_syndrome				26	128					0	0	0.125774	0	0
GPR22	2845	broad.mit.edu	37	7	107115465	107115465	+	Silent	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:107115465T>A	uc003vef.2	+	3	2306	c.960T>A	c.(958-960)TCT>TCA	p.S320S	COG5_uc003vec.2_Intron|COG5_uc003ved.2_Intron|COG5_uc003vee.2_Intron	NM_005295	NP_005286	Q99680	GPR22_HUMAN	G protein-coupled receptor 22	320	Helical; Name=6; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(2)	2						TGATTATTTCTACATTTCTTC	0.373000													19	88					0	0	0.049695	0	0
IQUB	154865	broad.mit.edu	37	7	123136764	123136764	+	Missense_Mutation	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:123136764T>C	uc003vkn.2	-	7	1797	c.1220A>G	c.(1219-1221)TAT>TGT	p.Y407C	IQUB_uc003vko.2_Missense_Mutation_p.Y407C|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.Y407C	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	407										ovary(3)|large_intestine(1)	4						TAATGCATTATAAAGAAATTC	0.308000													14	51					0	0	0.146539	0	0
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr7:140453193T>C	uc003vwc.3	-	15	1803	c.1742A>G	c.(1741-1743)AAT>AGT	p.N581S		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	581	Protein kinase.		N -> D (in CFC syndrome).|N -> S (in a colorectal adenocarcinoma sample; somatic mutation).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.N581S(7)|p.N581Y(1)|p.N581I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	AAGAAATATATCTGAGGTGTA	0.358000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	74					0	0	0.146539	0	0
C9orf66	157983	broad.mit.edu	37	9	214551	214551	+	Silent	SNP	G	T	T			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:214551G>T	uc003zge.3	-	1	1343	c.846C>A	c.(844-846)CCC>CCA	p.P282P	DOCK8_uc011lls.1_5'Flank|DOCK8_uc003zgf.2_5'Flank	NM_152569	NP_689782	Q5T8R8	CI066_HUMAN	hypothetical protein LOC157983	282										central_nervous_system(1)	1	all_lung(41;0.218)	all_cancers(5;2.09e-12)|all_epithelial(5;6.16e-09)|all_lung(10;1.15e-08)|Lung NSC(10;1.91e-08)|Acute lymphoblastic leukemia(5;0.00457)|all_hematologic(5;0.0332)|Breast(48;0.0646)|Prostate(43;0.137)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CAGCTTTGTGGGGCTCCCCCG	0.602000													3	43					0.000602214	0.000650567	0.014758	1	0
KIF27	55582	broad.mit.edu	37	9	86485505	86485505	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:86485505T>A	uc004ana.2	-	12	2830	c.2686A>T	c.(2686-2688)AAA>TAA	p.K896*	KIF27_uc010mpw.2_Nonsense_Mutation_p.K830*|KIF27_uc010mpx.2_Intron	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	896					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TCCTCAGCTTTCGGTTTTAGA	0.363000													13	89					0	0	0.146539	0	0
DAPK1	1612	broad.mit.edu	37	9	90254289	90254289	+	Missense_Mutation	SNP	G	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:90254289G>C	uc004apc.2	+	5	582	c.444G>C	c.(442-444)TTG>TTC	p.L148F	DAPK1_uc004ape.2_Missense_Mutation_p.L148F|DAPK1_uc004apd.2_Missense_Mutation_p.L148F|DAPK1_uc011ltg.1_Missense_Mutation_p.L148F|DAPK1_uc011lth.1_5'UTR	NM_004938	NP_004929	P53355	DAPK1_HUMAN	death-associated protein kinase 1	148	Protein kinase.				apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			ovary(1)|breast(1)	2						TAATGCTTTTGGATAGAAATG	0.363000									Chronic_Lymphocytic_Leukemia_Familial_Clustering_of				24	127					0	0	0.091800	0	0
PSMD5	5711	broad.mit.edu	37	9	123591454	123591454	+	Silent	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:123591454T>C	uc004bko.2	-	5	613	c.594A>G	c.(592-594)GAA>GAG	p.E198E	PSMD5_uc011lye.1_Silent_p.E155E	NM_005047	NP_005038	Q16401	PSMD5_HUMAN	proteasome 26S non-ATPase subunit 5	198					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding				0						AGTTTAAAGATTCTGGTGACA	0.398000													13	77					0	0	0.119110	0	0
SPTAN1	6709	broad.mit.edu	37	9	131339498	131339498	+	Silent	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:131339498T>C	uc004bvl.3	+	7	989	c.876T>C	c.(874-876)GCT>GCC	p.A292A	SPTAN1_uc011mbg.1_Silent_p.A292A|SPTAN1_uc011mbh.1_Silent_p.A304A|SPTAN1_uc004bvm.3_Silent_p.A292A|SPTAN1_uc004bvn.3_Silent_p.A292A	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	292	Spectrin 4.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						GTGTTCAGGCTCTGCTTCGGA	0.473000													38	138					0	0	0.086207	0	0
KCNT1	57582	broad.mit.edu	37	9	138683918	138683918	+	Missense_Mutation	SNP	G	A	A			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr9:138683918G>A	uc011mdq.1	+	31	3693	c.3619G>A	c.(3619-3621)GTG>ATG	p.V1207M	KCNT1_uc011mdr.1_Missense_Mutation_p.V1055M|KCNT1_uc010nbf.2_Missense_Mutation_p.V1183M	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	1207						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCTGGCTCACGTGGCCAGCAG	0.677000													6	25					0	0	0.029380	0	0
ARSD	414	broad.mit.edu	37	X	2826885	2826885	+	Splice_Site	SNP	T	C	C			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chrX:2826885T>C	uc004cqy.2	-	9	1375	c.1299_splice	c.e9-1	p.R433_splice	ARSD_uc004cqz.1_Intron	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor							lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCAATCACCCTGATTTCATGA	0.473000													6	15					0	0	0.029380	0	0
OR8I2	120586	broad.mit.edu	37	11	55861307	55861308	+	Frame_Shift_Ins	INS	-	T	T	rs144690814		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr11:55861307_55861308insT	uc010rix.1	+	1	524_525	c.524_525insT	c.(523-525)CATfs	p.H175fs		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					AGCATCAATCATTTTTTTTGTG	0.441													7	213	---	---	---	---					
GRIP1	23426	broad.mit.edu	37	12	66838463	66838463	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr12:66838463delT	uc001stk.2	-	12	1673	c.1432delA	c.(1432-1434)ATTfs	p.I478fs	GRIP1_uc010sta.1_Frame_Shift_Del_p.I422fs|GRIP1_uc001stj.2_Frame_Shift_Del_p.I260fs|GRIP1_uc001stl.1_Frame_Shift_Del_p.I370fs|GRIP1_uc001stm.2_Frame_Shift_Del_p.I478fs	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	530	PDZ 4.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		TCTGTTGGAATTCCATTGATG	0.458													22	84	---	---	---	---					
DCLK1	9201	broad.mit.edu	37	13	36382392	36382396	+	Frame_Shift_Del	DEL	GGAGA	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr13:36382392_36382396delGGAGA	uc001uvf.2	-	14	2061_2065	c.1828_1832delTCTCC	c.(1828-1833)TCTCCAfs	p.S610fs	DCLK1_uc001uve.3_Frame_Shift_Del_p.S303fs|DCLK1_uc010teh.1_Frame_Shift_Del_p.S303fs|DCLK1_uc010abk.2_Frame_Shift_Del_p.S130fs	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	610_611	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		ATCCCAGTATGGAGAAGGAAAGTCC	0.424													35	142	---	---	---	---					
F10	2159	broad.mit.edu	37	13	113803360	113803360	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr13:113803360delC	uc001vsx.2	+	8	1053	c.996delC	c.(994-996)ATCfs	p.I332fs	F10_uc001vsy.2_Frame_Shift_Del_p.S329fs|F10_uc001vsz.2_Frame_Shift_Del_p.S331fs	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	332	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGACCCCCATCACCTTCCGCA	0.632													28	166	---	---	---	---					
FANCM	57697	broad.mit.edu	37	14	45667882	45667882	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:45667882delT	uc001wwd.3	+	22	5851	c.5752delT	c.(5752-5754)TATfs	p.Y1918fs	FANCM_uc010anf.2_Frame_Shift_Del_p.Y1892fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.Y1454fs|FANCM_uc010ang.2_Frame_Shift_Del_p.Y1167fs	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1918	Interaction with FAAP24 and EME1.				DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						AACAAAGAGCTATGACAGCCT	0.363								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				22	87	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													6	13	---	---	---	---					
SRCAP	10847	broad.mit.edu	37	16	30723210	30723210	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:30723210delA	uc002dze.1	+	12	1932	c.1547delA	c.(1546-1548)GAAfs	p.E516fs	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Frame_Shift_Del_p.E373fs|SRCAP_uc010bzz.1_Frame_Shift_Del_p.E86fs	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	516	Glu-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GAGGAGGAAGAAACAAGTGGA	0.473													13	65	---	---	---	---					
CNOT1	23019	broad.mit.edu	37	16	58633189	58633190	+	Frame_Shift_Ins	INS	-	CCAC	CCAC			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr16:58633189_58633190insCCAC	uc002env.2	-	2	345_346	c.52_53insGTGG	c.(52-54)GACfs	p.D18fs	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Frame_Shift_Ins_p.D18fs|CNOT1_uc002enx.2_Frame_Shift_Ins_p.D18fs|CNOT1_uc002enz.1_5'UTR	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	18				D -> G (in Ref. 1; CAD97851).	nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GGTTAAATTGTCCACCAGGTAG	0.490													25	97	---	---	---	---					
SH3BP4	23677	broad.mit.edu	37	2	235962373	235962373	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr2:235962373delC	uc002vvp.2	+	6	3198	c.2805delC	c.(2803-2805)CTCfs	p.L935fs	SH3BP4_uc010fym.2_Frame_Shift_Del_p.L917fs|SH3BP4_uc002vvq.2_Frame_Shift_Del_p.L935fs	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	935					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		GGAAGCACCTCACTGGGACTC	0.592													34	135	---	---	---	---					
SCN11A	11280	broad.mit.edu	37	3	38891987	38891988	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr3:38891987_38891988delGC	uc011ays.1	-	25	4510_4511	c.4311_4312delGC	c.(4309-4314)GTGCTTfs	p.V1437fs	SCN11A_uc003cis.1_Frame_Shift_Del_p.V102fs	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1437_1438	IV.|Helical; Name=S3 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATGGAAAGAAGCACGACCACAC	0.347													39	99	---	---	---	---					
C4orf35	85438	broad.mit.edu	37	4	71201158	71201158	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr4:71201158delT	uc003hff.2	+	1	488	c.402delT	c.(400-402)GATfs	p.D134fs		NM_033122	NP_149113	Q96KC9	CABS1_HUMAN	testis development protein NYD-SP26	134						flagellum	calcium ion binding				0		all_hematologic(202;0.196)				CTTTAATAGATTTTTCCACTG	0.383													23	97	---	---	---	---					
LMBRD1	55788	broad.mit.edu	37	6	70451754	70451755	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:70451754_70451755insAA	uc003pfa.2	-	6	603_604	c.488_489insTT	c.(487-489)TTGfs	p.L163fs	LMBRD1_uc003pey.2_5'UTR|LMBRD1_uc003pez.2_Frame_Shift_Ins_p.L90fs|LMBRD1_uc010kal.2_Frame_Shift_Ins_p.L90fs|LMBRD1_uc003pfb.2_RNA	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	163	Helical; Name=4; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						TGGGAACATTCAATGGAACAAA	0.267													14	75	---	---	---	---					
TPBG	7162	broad.mit.edu	37	6	83075159	83075159	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	g.chr6:83075159delG	uc003pjn.3	+	3	1417	c.481delG	c.(481-483)GCTfs	p.A161fs	TPBG_uc010kbj.2_Frame_Shift_Del_p.A161fs|TPBG_uc003pjo.2_Frame_Shift_Del_p.A161fs	NM_006670	NP_006661	Q13641	TPBG_HUMAN	trophoblast glycoprotein precursor	161	Extracellular (Potential).|LRR 3.				cell adhesion	integral to plasma membrane				central_nervous_system(1)	1		all_cancers(76;0.000805)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0897)		BRCA - Breast invasive adenocarcinoma(397;0.107)		CAGTCCCTTCGCTTTCTCGGG	0.667													31	179	---	---	---	---					
