Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VPS13D	55187	broad.mit.edu	37	1	12327038	12327038	+	Silent	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:12327038T>C	uc001atv.2	+	14	1836	c.1695T>C	c.(1693-1695)ACT>ACC	p.T565T	VPS13D_uc001atw.2_Silent_p.T565T	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	565					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CAGAAGGAACTATGTTTCCTC	0.408000													23	118					0	0	0.014323	0	0
MTF1	4520	broad.mit.edu	37	1	38323066	38323066	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:38323066T>C	uc001cce.1	-	2	406	c.265A>G	c.(265-267)ATG>GTG	p.M89V	MTF1_uc009vvj.1_5'UTR	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	89						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CCCTGGGACATTGCTTCATGA	0.468000													3	151					0	0	0.009096	0	0
PTPRF	5792	broad.mit.edu	37	1	44058242	44058242	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:44058242C>G	uc001cjr.2	+	11	2123	c.1783C>G	c.(1783-1785)CCC>GCC	p.P595A	PTPRF_uc001cjs.2_Missense_Mutation_p.P595A|PTPRF_uc001cju.2_Missense_Mutation_p.P166A|PTPRF_uc009vwt.2_Missense_Mutation_p.P166A|PTPRF_uc001cjv.2_Missense_Mutation_p.P166A	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	595	Extracellular (Potential).|Fibronectin type-III 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CGTCTTCACCCCCACCATTGA	0.542000													29	43					0	0	0.005443	0	0
C1orf52	148423	broad.mit.edu	37	1	85725088	85725088	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:85725088T>G	uc001dkv.2	-	1	268	c.229A>C	c.(229-231)AAC>CAC	p.N77H	C1orf52_uc001dkw.2_RNA|C1orf52_uc001dkx.3_RNA|C1orf52_uc009wcn.2_Missense_Mutation_p.N77H	NM_198077	NP_932343	Q8N6N3	CA052_HUMAN	hypothetical protein LOC148423	77										ovary(1)	1				all cancers(265;0.0105)|Epithelial(280;0.0293)		ATCTGTTTGTTGAGCGGATTG	0.652000											OREG0013580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	41					0	0	0.004656	0	0
LRRC8D	55144	broad.mit.edu	37	1	90399406	90399406	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:90399406A>T	uc001dnm.2	+	3	1204	c.779A>T	c.(778-780)AAA>ATA	p.K260I	LRRC8D_uc001dnn.2_Missense_Mutation_p.K260I	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	260						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		ACTGGCTTTAAATTTTCAGCT	0.458000													15	23					0	0	0.003163	0	0
DNTTIP2	30836	broad.mit.edu	37	1	94342829	94342829	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:94342829A>C	uc001dqf.2	-	2	700	c.662T>G	c.(661-663)ATT>AGT	p.I221S	DNTTIP2_uc010otm.1_RNA|DNTTIP2_uc009wdo.1_Missense_Mutation_p.I16S	NM_014597	NP_055412	Q5QJE6	TDIF2_HUMAN	deoxynucleotidyltransferase, terminal,	221					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_lung(203;0.0111)|Lung NSC(277;0.0347)		all cancers(265;0.00679)|GBM - Glioblastoma multiforme(16;0.0278)|Epithelial(280;0.128)		TCCTGGTACAATCTTACTATC	0.393000													90	166					0	0	0.014410	0	0
SASS6	163786	broad.mit.edu	37	1	100572514	100572514	+	Silent	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:100572514A>C	uc001dsu.2	-	12	1503	c.1362T>G	c.(1360-1362)GTT>GTG	p.V454V	SASS6_uc009wdz.2_Silent_p.V287V	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	454	Potential.				centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		CAAGTTTTTTAACTGTAGCTT	0.244000													10	21					0	0	0.006214	0	0
HORMAD1	84072	broad.mit.edu	37	1	150679129	150679129	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:150679129T>A	uc001evk.1	-	10	810	c.704A>T	c.(703-705)AAT>ATT	p.N235I	HORMAD1_uc001evl.1_Missense_Mutation_p.N228I|HORMAD1_uc001evm.1_Missense_Mutation_p.N155I	NM_032132	NP_115508	Q86X24	HORM1_HUMAN	HORMA domain containing 1	235					blastocyst development|cell differentiation|meiotic DNA double-strand break formation|meiotic recombination checkpoint|meiotic sister chromatid cohesion|mitosis|oogenesis|regulation of homologous chromosome segregation|spermatogenesis|synaptonemal complex assembly	chromosome|nucleus				ovary(2)|central_nervous_system(1)	3	all_cancers(9;3.23e-52)|all_epithelial(9;4.68e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.0009)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;2.32e-23)|all cancers(9;5.21e-23)|OV - Ovarian serous cystadenocarcinoma(6;6.72e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			TGAGTCAATATTTTCCATTCG	0.343000													77	121					0	0	0.014410	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161019045	161019045	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:161019045C>T	uc001fxl.2	-	12	2112	c.1766G>A	c.(1765-1767)TGT>TAT	p.C589Y	ARHGAP30_uc001fxk.2_Missense_Mutation_p.C589Y|ARHGAP30_uc001fxm.2_Missense_Mutation_p.C435Y|ARHGAP30_uc009wtx.2_Missense_Mutation_p.C262Y|ARHGAP30_uc001fxn.1_Missense_Mutation_p.C435Y	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	589					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTCCAGGGAACAGCAGCTGGG	0.572000													44	137					0	0	0.011902	0	0
CREG1	8804	broad.mit.edu	37	1	167515357	167515357	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:167515357A>G	uc001gel.2	-	3	718	c.640T>C	c.(640-642)TAT>CAT	p.Y214H		NM_003851	NP_003842	O75629	CREG1_HUMAN	cellular repressor of E1A-stimulated genes	214					cell proliferation|multicellular organismal development|regulation of growth|regulation of transcription from RNA polymerase II promoter	extracellular region	FMN binding|transcription corepressor activity				0						ACATTATAATATTCTTCTGGT	0.393000													26	35					0	0	0.004656	0	0
HMCN1	83872	broad.mit.edu	37	1	185984290	185984290	+	Splice_Site	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:185984290G>A	uc001grq.1	+	31	4860	c.4631_splice	c.e31-1	p.I1544_splice		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor						response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATCCTTTGTAGTTCCACCTAG	0.338000													30	46					0	0	0.010818	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204199641	204199641	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr1:204199641A>G	uc001hau.2	-	18	2800	c.2483T>C	c.(2482-2484)ATG>ACG	p.M828T		NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	828										ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			GTGCCGCCGCATTCGGTCAAT	0.652000													3	6					0	0	0.004672	0	0
ENTPD7	57089	broad.mit.edu	37	10	101460770	101460770	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr10:101460770T>G	uc001kqa.3	+	11	1554	c.1376T>G	c.(1375-1377)TTC>TGC	p.F459C	ENTPD7_uc009xwl.2_Missense_Mutation_p.F461C	NM_020354	NP_065087	Q9NQZ7	ENTP7_HUMAN	ectonucleoside triphosphate diphosphohydrolase	459	Vesicular (Potential).					cytoplasmic vesicle membrane|integral to membrane	hydrolase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;4.72e-10)|all cancers(201;3.75e-08)		ACTCAGAGATTCAAGAATGGC	0.433000													78	154					0	0	0.014410	0	0
OR56A5	390084	broad.mit.edu	37	11	5989644	5989644	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:5989644C>A	uc010qzu.1	-	1	81	c.81G>T	c.(79-81)CAG>CAT	p.Q27H		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	27	Extracellular (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ACAGCCAGTGCTGCCAGCTCT	0.532000													7	6					2.0095e-06	2.24136e-06	0.001984	1	0
AGBL2	79841	broad.mit.edu	37	11	47711964	47711964	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:47711964T>G	uc001ngg.2	-	9	1395	c.1295A>C	c.(1294-1296)AAT>ACT	p.N432T	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Missense_Mutation_p.N394T|AGBL2_uc001ngh.1_Missense_Mutation_p.N376T	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	432					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						GTAAACGGTATTTCCTGCTAG	0.498000													29	94					0	0	0.005443	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696113	60696113	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:60696113G>C	uc001nqj.2	+	4	740	c.547G>C	c.(547-549)GCC>CCC	p.A183P	TMEM132A_uc001nqi.2_Missense_Mutation_p.A183P|TMEM132A_uc001nqk.2_Missense_Mutation_p.A196P|TMEM132A_uc001nql.1_Missense_Mutation_p.A196P	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	183	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ATCCCTGGGCGCCTGCGTGGT	0.642000													31	37					0	0	0.005524	0	0
DPF2	5977	broad.mit.edu	37	11	65113198	65113198	+	Silent	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:65113198G>A	uc001odm.2	+	7	711	c.699G>A	c.(697-699)TTG>TTA	p.L233L	DPF2_uc001odn.2_Silent_p.L247L|DPF2_uc010roe.1_Intron	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	233					apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						ACTCCCACTTGGCTGAGGAGG	0.512000													22	34					0	0	0.014323	0	0
SPTBN2	6712	broad.mit.edu	37	11	66468283	66468283	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:66468283G>T	uc001ojd.2	-	16	3359	c.3287C>A	c.(3286-3288)ACC>AAC	p.T1096N		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1096	Spectrin 8.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CTCAGGCAGGGTGGCCGGCCC	0.692000													12	10					4.3838e-07	4.9855e-07	0.001855	1	0
PCF11	51585	broad.mit.edu	37	11	82877600	82877600	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:82877600A>G	uc001ozx.3	+	5	2006	c.1661A>G	c.(1660-1662)GAT>GGT	p.D554G	PCF11_uc010rsu.1_Missense_Mutation_p.D554G	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	554					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GATATTCGGGATCCAAGGCGA	0.423000													16	45					0	0	0.006122	0	0
SNX19	399979	broad.mit.edu	37	11	130785820	130785820	+	Silent	SNP	T	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr11:130785820T>A	uc001qgk.3	-	1	563	c.15A>T	c.(13-15)ACA>ACT	p.T5T	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Silent_p.T5T|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	5					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		ACGGTGGCACTGTTTCTGTCT	0.542000													13	14					0	0	0.013537	0	0
ATN1	1822	broad.mit.edu	37	12	7045767	7045767	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr12:7045767C>A	uc001qrw.1	+	5	1574	c.1337C>A	c.(1336-1338)CCT>CAT	p.P446H	ATN1_uc001qrx.1_Missense_Mutation_p.P446H|ATN1_uc001qry.1_Missense_Mutation_p.P445H	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	446	Poly-Pro.				cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						CCACCACCTCCTCCCTATGGC	0.627000													115	172					8.46469e-41	1.06729e-40	0.014410	1	0
PITPNM2	57605	broad.mit.edu	37	12	123479959	123479959	+	Silent	SNP	C	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr12:123479959C>T	uc001uej.1	-	13	2170	c.2031G>A	c.(2029-2031)CAG>CAA	p.Q677Q	PITPNM2_uc001uek.1_Silent_p.Q677Q	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	677					metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		CCTGGTGCTGCTGGATGGTAT	0.637000													38	81					0	0	0.005524	0	0
GPC5	2262	broad.mit.edu	37	13	92345909	92345909	+	Missense_Mutation	SNP	C	T	T	rs150834424	byFrequency	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr13:92345909C>T	uc010tif.1	+	3	1160	c.794C>T	c.(793-795)GCG>GTG	p.A265V		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	265						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CAAGGCCTGGCGCTCACTAAG	0.547000													36	62					0	0	0.003755	0	0
PYGL	5836	broad.mit.edu	37	14	51387749	51387749	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr14:51387749C>T	uc001wyu.2	-	6	824	c.697G>A	c.(697-699)GGC>AGC	p.G233S	PYGL_uc010tqq.1_Missense_Mutation_p.G199S|PYGL_uc001wyv.2_5'UTR|PYGL_uc010anz.1_Missense_Mutation_p.G36S	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	233					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	TTCATGTAGCCGGGCACGGGG	0.512000													33	23					0	0	0.004878	0	0
TTC7B	145567	broad.mit.edu	37	14	91161893	91161893	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr14:91161893C>G	uc001xyp.2	-	6	850	c.728G>C	c.(727-729)AGA>ACA	p.R243T	uc001xyr.1_5'Flank	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	243	TPR 2.						binding			ovary(2)	2		Melanoma(154;0.222)				GAGAAGCTCTCTAAATCTTCC	0.413000													18	14					0	0	0.010504	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42105966	42105966	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr15:42105966G>A	uc001zok.3	+	10	1271	c.985G>A	c.(985-987)GTC>ATC	p.V329I	MAPKBP1_uc001zoj.3_Missense_Mutation_p.V323I|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.V323I|MAPKBP1_uc010udb.1_Missense_Mutation_p.V211I|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Intron	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	329										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CATTGCTAGCGTCACCGAGGC	0.592000													35	95					0	0	0.005524	0	0
AP4E1	23431	broad.mit.edu	37	15	51289917	51289917	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr15:51289917T>A	uc001zyx.1	+	18	2771	c.2741T>A	c.(2740-2742)ATA>AAA	p.I914K	AP4E1_uc010bex.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	914					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		ACTGAATACATACACTCAAAT	0.353000													55	69					0	0	0.014410	0	0
PIAS1	8554	broad.mit.edu	37	15	68479999	68479999	+	Silent	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr15:68479999T>C	uc002aqz.2	+	14	1878	c.1782T>C	c.(1780-1782)AGT>AGC	p.S594S	PIAS1_uc002ara.2_Silent_p.S202S	NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	594	Ser-rich.|4 X 4 AA repeats of N-T-S-L.				androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						ATCAGTTAAGTGCAGGAGGCA	0.502000													30	37					0	0	0.008361	0	0
SMG1	23049	broad.mit.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr16:18937330T>C	uc002dfm.2	-	1	397	c.34A>G	c.(34-36)AGC>GGC	p.S12G		NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	12	Interaction with SMG8 and SMG9.				DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						ccgccgccgctgcTCAGCCGA	0.627000													2	7					0	0	0.004672	0	0
ZNF688	146542	broad.mit.edu	37	16	30581595	30581595	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr16:30581595G>A	uc002dyt.2	-	3	1251	c.473C>T	c.(472-474)GCC>GTC	p.A158V	ZNF688_uc002dys.2_Missense_Mutation_p.A144V|uc002dyu.2_5'Flank	NM_145271	NP_660314	P0C7X2	ZN688_HUMAN	zinc finger protein 688 isoform a	158					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGGGTCCCAGGCAGCATTTTT	0.672000													18	19					0	0	0.004990	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53708941	53708941	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr16:53708941A>C	uc002ehp.2	-	7	934	c.870T>G	c.(868-870)ATT>ATG	p.I290M	RPGRIP1L_uc002eho.3_Missense_Mutation_p.I290M|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.I290M|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.I290M|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.I290M|RPGRIP1L_uc002ehq.1_Missense_Mutation_p.I290M	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	290					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CTTGAAGCTGAATAAATTTTC	0.308000													30	37					0	0	0.006320	0	0
SLC16A13	201232	broad.mit.edu	37	17	6942204	6942204	+	Silent	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:6942204C>G	uc002geh.2	+	3	1385	c.1077C>G	c.(1075-1077)CTC>CTG	p.L359L		NM_201566	NP_963860	Q7RTY0	MOT13_HUMAN	monocarboxylate transporter 13	359	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)|skin(1)	2						GGCCTCCTCTCTCAGGTAAGT	0.378000													11	145					0	0	0.010729	0	0
CHRNB1	1140	broad.mit.edu	37	17	7357711	7357711	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:7357711C>G	uc002ghb.2	+	8	957	c.916C>G	c.(916-918)CCC>GCC	p.P306A	CHRNB1_uc010vty.1_Missense_Mutation_p.P234A|CHRNB1_uc010vtz.1_Missense_Mutation_p.P140A	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	306					behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				ACTATCAGTACCCATTATTAT	0.512000													42	123					0	0	0.014410	0	0
SHBG	6462	broad.mit.edu	37	17	7536218	7536218	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:7536218C>A	uc002gie.2	+	7	1039	c.1001C>A	c.(1000-1002)GCT>GAT	p.A334D	SHBG_uc010cmo.2_Missense_Mutation_p.A222D|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Missense_Mutation_p.A276D|SHBG_uc010cmu.2_Intron|SHBG_uc010cmz.2_Intron|SHBG_uc010cmv.2_Intron|SHBG_uc010cmw.2_Intron|SHBG_uc010cmx.2_Intron|SHBG_uc010cmy.2_Missense_Mutation_p.A276D|SHBG_uc002gid.3_Intron|SHBG_uc010cnd.2_Intron|SHBG_uc010cna.2_Intron|SHBG_uc010vue.1_Missense_Mutation_p.A316D|SHBG_uc010vuf.1_Intron|SHBG_uc010cnb.2_Intron|SHBG_uc010cnc.2_Intron	NM_001040	NP_001031	P04278	SHBG_HUMAN	sex hormone-binding globulin isoform 1	334	Laminin G-like 2.			A -> L (in Ref. 2; AAC18778).	hormone transport	extracellular region	androgen binding|protein homodimerization activity	p.0?(1)|p.?(1)			0		all_cancers(10;0.0867)		READ - Rectum adenocarcinoma(115;0.168)	Danazol(DB01406)|Dromostanolone(DB00858)|Estradiol(DB00783)|Estrone(DB00655)|Fluoxymesterone(DB01185)|Hydrocortisone(DB00741)|Mitotane(DB00648)|Norethindrone(DB00717)|Testosterone(DB00624)	TTAGGCCTGGCTCCCCTCCTT	0.557000											OREG0024140	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	31					3.57733e-08	4.10862e-08	0.009535	1	0
ALOXE3	59344	broad.mit.edu	37	17	8018295	8018295	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:8018295G>A	uc010cnr.2	-	5	885	c.515C>T	c.(514-516)GCC>GTC	p.A172V	ALOXE3_uc002gka.2_Missense_Mutation_p.A328V|ALOXE3_uc010vuo.1_Missense_Mutation_p.A304V|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	172	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						CTTTGTCAAGGCAAATTTCTT	0.507000													6	307					0	0	0.001984	0	0
SLC6A4	6532	broad.mit.edu	37	17	28543164	28543164	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:28543164G>T	uc002hey.3	-	7	1452	c.908C>A	c.(907-909)CCT>CAT	p.P303H		NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	303					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	CCAGGCTCCAGGGAGGGTGGC	0.522000													35	65					7.63505e-26	9.42197e-26	0.012213	1	0
SPATA20	64847	broad.mit.edu	37	17	48627419	48627419	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:48627419G>A	uc002irf.2	+	7	1029	c.888G>A	c.(886-888)ATG>ATA	p.M296I	SPATA20_uc002irc.2_5'UTR|SPATA20_uc002ire.2_Missense_Mutation_p.M252I|SPATA20_uc002ird.2_Missense_Mutation_p.M312I|SPATA20_uc010wmv.1_Missense_Mutation_p.M322I|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	296					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CCCAGCAGATGGCCTTGCATA	0.617000													6	382					0	0	0.001168	0	0
SNORA76	677842	broad.mit.edu	37	17	62223780	62223780	+	RNA	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr17:62223780C>A	uc002jeb.2	+	1		c.82C>A				NR_002995				Homo sapiens small nucleolar RNA, H/ACA box 76 (SNORA76), non-coding RNA.												0						TTGCGCATAACTGGGGCCGCC	0.627000													66	112					3.8128e-34	4.75575e-34	0.014410	1	0
WBP11P1	441818	broad.mit.edu	37	18	30091940	30091940	+	RNA	SNP	A	C	C	rs2015877	by1000genomes	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr18:30091940A>C	uc010dmc.2	+	1		c.315A>C				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GTTTGAGCTGAAGTTTTAAAG	0.418000													3	75					0	0	0.004672	0	0
HDHD2	84064	broad.mit.edu	37	18	44639349	44639349	+	Silent	SNP	A	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr18:44639349A>T	uc002lcs.2	-	6	808	c.675T>A	c.(673-675)ACT>ACA	p.T225T	HDHD2_uc002lct.2_Silent_p.T135T	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	225							hydrolase activity				0						GATACATACCAGTCTTTACTA	0.408000													21	48					0	0	0.003330	0	0
REXO1	57455	broad.mit.edu	37	19	1821535	1821535	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:1821535G>A	uc002lua.3	-	5	2472	c.2377C>T	c.(2377-2379)CAC>TAC	p.H793Y	REXO1_uc010dsq.2_Missense_Mutation_p.H102Y|REXO1_uc010xgs.1_5'UTR|REXO1_uc010dsp.1_5'Flank|uc002lub.1_5'Flank	NM_020695	NP_065746	Q8N1G1	REXO1_HUMAN	transcription elongation factor B polypeptide 3	793						nucleus	exonuclease activity|nucleic acid binding				0		Ovarian(11;1.78e-06)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GATGGACTGTGGGCGATTCGC	0.642000													4	93					0	0	0.000602	0	0
MUC16	94025	broad.mit.edu	37	19	9083127	9083127	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:9083127C>A	uc002mkp.2	-	1	8892	c.8688G>T	c.(8686-8688)GAG>GAT	p.E2896D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2897	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACTTGGGACCTCAGAAAACT	0.507000													6	18					0.00116845	0.00126673	0.001168	1	0
SFRS14	10147	broad.mit.edu	37	19	19141834	19141834	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:19141834T>G	uc002nkx.2	-	2	193	c.47A>C	c.(46-48)CAA>CCA	p.Q16P	SFRS14_uc002nkz.1_Missense_Mutation_p.Q30P|SFRS14_uc002nla.1_Missense_Mutation_p.Q16P|SFRS14_uc002nlb.2_Missense_Mutation_p.Q16P|SFRS14_uc010xqk.1_5'UTR|ARMC6_uc002nlc.2_5'Flank|ARMC6_uc002nld.2_5'Flank|ARMC6_uc010xql.1_5'Flank|ARMC6_uc002nle.2_5'Flank	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	16					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GGCTTTTTCTTGTAATACAGC	0.393000													5	166					0	0	0.000602	0	0
MEF2B	100271849	broad.mit.edu	37	19	19258537	19258537	+	Silent	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:19258537A>C	uc002nlm.2	-	4	477	c.363T>G	c.(361-363)GGT>GGG	p.G121G	MEF2B_uc002nln.2_Silent_p.G168G|MEF2B_uc002nll.2_Silent_p.G121G|LOC729991-MEF2B_uc010xqo.1_Silent_p.G121G|LOC729991-MEF2B_uc010xqp.1_Silent_p.G121G|LOC729991-MEF2B_uc002nlo.2_Silent_p.G121G|LOC729991-MEF2B_uc002nlp.2_Silent_p.G121G|MEF2B_uc002nlk.2_Silent_p.G124G	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			AGGCCGGATCACCCCCTTCGC	0.627000													6	31					0	0	0.008871	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387423	46387423	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:46387423G>A	uc002pds.1	-	1	1954	c.1610C>T	c.(1609-1611)GCG>GTG	p.A537V		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	537	Cys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CGGGCCCTGCGCCTTGATGAA	0.677000													7	45					0	0	0.001984	0	0
SLC6A16	28968	broad.mit.edu	37	19	49793532	49793532	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:49793532G>T	uc002pmz.2	-	12	2293	c.2059C>A	c.(2059-2061)CCC>ACC	p.P687T	SLC6A16_uc002pna.2_3'UTR	NM_014037	NP_054756	Q9GZN6	S6A16_HUMAN	solute carrier family 6, member 16	687	Cytoplasmic (Potential).					integral to membrane|intracellular	neurotransmitter:sodium symporter activity			skin(2)|ovary(1)|kidney(1)	4		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00099)|GBM - Glioblastoma multiforme(486;0.0336)		GGCCTGAAGGGAATCCTATGT	0.512000													7	219					0.00198382	0.00213077	0.001984	1	0
FAM71E1	112703	broad.mit.edu	37	19	50970929	50970929	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:50970929G>A	uc002psh.2	-	4	1055	c.697C>T	c.(697-699)CGC>TGC	p.R233C	FAM71E1_uc002psg.2_Missense_Mutation_p.R217C|FAM71E1_uc002psi.2_RNA	NM_138411	NP_612420	Q6IPT2	F71E1_HUMAN	hypothetical protein LOC112703	233										breast(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.0077)|GBM - Glioblastoma multiforme(134;0.026)		AAGCGCAGGCGGTAGAGCAGC	0.443000													4	6					0	0	0.009096	0	0
ZFP28	140612	broad.mit.edu	37	19	57066282	57066282	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:57066282T>C	uc002qnj.2	+	8	2199	c.2128T>C	c.(2128-2130)TTT>CTT	p.F710L	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	710	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		TGGGAAGGCCTTTGGTGATAA	0.443000													40	70					0	0	0.006230	0	0
ZFP28	140612	broad.mit.edu	37	19	57066298	57066298	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr19:57066298C>A	uc002qnj.2	+	8	2215	c.2144C>A	c.(2143-2145)TCC>TAC	p.S715Y	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	715	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		GATAACTCATCCTGTACTCAA	0.433000													40	79					4.74526e-06	5.24238e-06	0.006230	1	0
ASAP2	8853	broad.mit.edu	37	2	9533671	9533671	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:9533671T>C	uc002qzh.2	+	24	2919	c.2579T>C	c.(2578-2580)TTG>TCG	p.L860S	ASAP2_uc002qzi.2_Missense_Mutation_p.L815S	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	860	Pro-rich.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						ATGGAAGCCTTGAGCCAGCCG	0.701000													4	9					0	0	0.001168	0	0
NRBP1	29959	broad.mit.edu	37	2	27664588	27664588	+	Missense_Mutation	SNP	G	A	A	rs141700147		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:27664588G>A	uc002rko.2	+	19	2349	c.1517G>A	c.(1516-1518)CGG>CAG	p.R506Q	NRBP1_uc002rkq.2_Missense_Mutation_p.R505Q|NRBP1_uc002rkp.2_Missense_Mutation_p.R506Q|NRBP1_uc002rkr.2_Missense_Mutation_p.R297Q|KRTCAP3_uc002rks.2_5'Flank|KRTCAP3_uc010ylr.1_5'Flank|KRTCAP3_uc002rkt.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	506					ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					GACCAGAGCCGGTTGACTTCT	0.547000													107	165					0	0	0.014410	0	0
BIRC6	57448	broad.mit.edu	37	2	32693046	32693046	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:32693046T>C	uc010ezu.2	+	28	5781	c.5647T>C	c.(5647-5649)TAC>CAC	p.Y1883H		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1883					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGGTCATACCTACATCTTGCC	0.388000													3	27					0	0	0.004672	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656328	40656328	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:40656328G>T	uc002rrx.2	-	1	1117	c.1093C>A	c.(1093-1095)CGC>AGC	p.R365S	SLC8A1_uc002rry.2_Missense_Mutation_p.R365S|SLC8A1_uc002rrz.2_Missense_Mutation_p.R365S|SLC8A1_uc002rsa.2_Missense_Mutation_p.R365S|SLC8A1_uc002rsd.3_Missense_Mutation_p.R365S|SLC8A1_uc002rsb.1_Missense_Mutation_p.R365S|SLC8A1_uc010fan.1_Missense_Mutation_p.R365S|SLC8A1_uc002rsc.1_Missense_Mutation_p.R365S	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	365	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GCTTGAATGCGATAAAATGCT	0.433000													9	211					3.86212e-05	4.22647e-05	0.008291	1	0
MSH6	2956	broad.mit.edu	37	2	48027125	48027125	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:48027125C>G	uc002rwd.3	+	4	2155	c.2003C>G	c.(2002-2004)TCC>TGC	p.S668C	MSH6_uc002rwc.2_Missense_Mutation_p.S668C|MSH6_uc010fbj.2_Missense_Mutation_p.S366C|MSH6_uc010yoi.1_Missense_Mutation_p.S538C|MSH6_uc010yoj.1_Missense_Mutation_p.S366C	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	668					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			GAGTCTGATTCCATTGGGTTG	0.433000			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				98	158					0	0	0.014410	0	0
CCDC88A	55704	broad.mit.edu	37	2	55566741	55566741	+	Silent	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:55566741T>G	uc002ryv.2	-	13	2219	c.1377A>C	c.(1375-1377)TCA>TCC	p.S459S	CCDC88A_uc010yoz.1_Silent_p.S459S|CCDC88A_uc010ypa.1_Silent_p.S459S|CCDC88A_uc010ypb.1_Silent_p.S361S	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	459	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						ATAATCTACTTGATGTCAACT	0.363000													23	52					0	0	0.002780	0	0
TCF7L1	83439	broad.mit.edu	37	2	85536242	85536242	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:85536242T>C	uc002soy.2	+	12	1498	c.1424T>C	c.(1423-1425)ATG>ACG	p.M475T		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	475					chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						CACGGGAGCATGCTGGACTCC	0.652000													71	139					0	0	0.014410	0	0
EIF5B	9669	broad.mit.edu	37	2	100015354	100015354	+	Silent	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:100015354A>C	uc002tab.2	+	23	3721	c.3537A>C	c.(3535-3537)ACA>ACC	p.T1179T	EIF5B_uc010yvq.1_Silent_p.T161T	NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	1179					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						TTGAAGCTACAGATATTCTTG	0.398000													26	44					0	0	0.009535	0	0
CXCR4	7852	broad.mit.edu	37	2	136873381	136873381	+	Silent	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:136873381G>T	uc002tuz.2	-	2	212	c.117C>A	c.(115-117)ATC>ATA	p.I39I	CXCR4_uc002tuy.2_Silent_p.I43I|CXCR4_uc010fnk.2_Silent_p.I24I	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	39	Helical; Name=1.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	TGGGCAGGAAGATTTTATTGA	0.438000													52	96					1.4374e-25	1.75514e-25	0.014410	1	0
TTN	7273	broad.mit.edu	37	2	179585887	179585887	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:179585887G>A	uc010zfg.1	-	76	19351	c.19127C>T	c.(19126-19128)GCA>GTA	p.A6376V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A3037V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7303							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCTGCTTTGCAACTTTTGA	0.358000													6	48					0	0	0.001168	0	0
DNAH7	56171	broad.mit.edu	37	2	196749321	196749321	+	Silent	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:196749321T>C	uc002utj.3	-	35	5852	c.5751A>G	c.(5749-5751)CAA>CAG	p.Q1917Q		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1917					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGTGACAAATTGATAATCAT	0.433000													26	68					0	0	0.006320	0	0
GTF3C3	9330	broad.mit.edu	37	2	197636546	197636546	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:197636546T>G	uc002uts.2	-	15	2276	c.2186A>C	c.(2185-2187)AAC>ACC	p.N729T	GTF3C3_uc010zgu.1_Missense_Mutation_p.N700T	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	729						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						ATTTTCTGGGTTTTTCAGCAT	0.423000													4	99					0	0	0.000602	0	0
ERBB4	2066	broad.mit.edu	37	2	212426810	212426810	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:212426810C>A	uc002veg.1	-	20	2403	c.2305G>T	c.(2305-2307)GCT>TCT	p.A769S	ERBB4_uc002veh.1_Missense_Mutation_p.A769S|ERBB4_uc010zji.1_Missense_Mutation_p.A759S|ERBB4_uc010zjj.1_Missense_Mutation_p.A759S|ERBB4_uc010fut.1_Missense_Mutation_p.A769S	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	769	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		ATGATCAGAGCTTCCTGTAAG	0.403000										TSP Lung(8;0.080)			37	55					1.69901e-12	2.01107e-12	0.005524	1	0
NCOA6	23054	broad.mit.edu	37	20	33329544	33329544	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr20:33329544T>C	uc002xav.2	-	12	7087	c.4516A>G	c.(4516-4518)AAA>GAA	p.K1506E	NCOA6_uc002xaw.2_Missense_Mutation_p.K1506E	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1506					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CCAGGGGGTTTAATTGTCACA	0.463000													40	60					0	0	0.006230	0	0
SLC5A3	6526	broad.mit.edu	37	21	35468362	35468362	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr21:35468362G>A	uc002yto.2	+	2	1377	c.865G>A	c.(865-867)GCC>ACC	p.A289T	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	289	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						GGTCCTTGCAGCCAAAAACAT	0.478000													72	96					0	0	0.014410	0	0
ZNF295	49854	broad.mit.edu	37	21	43412280	43412280	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr21:43412280C>T	uc002zab.3	-	3	2139	c.1925G>A	c.(1924-1926)GGC>GAC	p.G642D	ZNF295_uc002yzz.3_Intron|ZNF295_uc002yzy.3_Missense_Mutation_p.G642D|ZNF295_uc002zaa.3_Missense_Mutation_p.G642D	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	642					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						ACCAGGCTTGCCGCGCCTTAA	0.438000													4	129					0	0	0.009096	0	0
POTEH	23784	broad.mit.edu	37	22	16287580	16287580	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr22:16287580G>T	uc010gqp.2	-	1	358	c.306C>A	c.(304-306)TGC>TGA	p.C102*	POTEH_uc002zlg.1_5'Flank|POTEH_uc002zlh.1_5'Flank|POTEH_uc002zlj.1_Translation_Start_Site	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	102										skin(1)	1						AGCAGTGGCAGCACCACTTGC	0.597000													124	122					1.34836e-70	1.73788e-70	0.014410	1	0
CENPM	79019	broad.mit.edu	37	22	42342456	42342456	+	Silent	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr22:42342456C>G	uc003bbn.2	-	2	170	c.102G>C	c.(100-102)TCG>TCC	p.S34S	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|CENPM_uc003bbm.2_5'UTR|CENPM_uc003bbo.2_Silent_p.S34S|CENPM_uc003bbp.1_Silent_p.S34S	NM_024053	NP_076958	Q9NSP4	CENPM_HUMAN	centromere protein M isoform a	34					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus					0						CTTTGAGCATCGAGTCCGCCA	0.647000											OREG0026600	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	22					0	0	0.009096	0	0
UBP1	7342	broad.mit.edu	37	3	33434887	33434887	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr3:33434887G>C	uc003cfq.3	-	14	1980	c.1450C>G	c.(1450-1452)CTG>GTG	p.L484V	FBXL2_uc011axq.1_Intron|FBXL2_uc011axr.1_Intron|UBP1_uc003cfr.3_Missense_Mutation_p.L448V|UBP1_uc010hga.2_Missense_Mutation_p.L484V	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	484					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						TTAAACACCAGCGCAAGTTTT	0.348000													73	20					0	0	0.014410	0	0
MUC4	4585	broad.mit.edu	37	3	195507827	195507827	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr3:195507827G>A	uc011bto.1	-	3	10700	c.10240C>T	c.(10240-10242)CTT>TTT	p.L3414F	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_5'Flank|MUC4_uc011btg.1_5'Flank|MUC4_uc011bth.1_5'Flank|MUC4_uc011bti.1_5'Flank|MUC4_uc011btj.1_5'Flank|MUC4_uc011btk.1_5'Flank|MUC4_uc011btl.1_5'Flank|MUC4_uc011btm.1_5'Flank|MUC4_uc011btn.1_5'Flank|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		ACTGAGGAAAGGCTGGTGACA	0.617000													4	0					0	0	0.004482	0	0
FBXO45	200933	broad.mit.edu	37	3	196304554	196304554	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr3:196304554A>T	uc010iai.2	+	2	680	c.549A>T	c.(547-549)CAA>CAT	p.Q183H		NM_001105573	NP_001099043	P0C2W1	FBSP1_HUMAN	F-box protein 45	183	B30.2/SPRY.				nervous system development|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	cell junction|postsynaptic membrane|presynaptic membrane	protein binding			skin(1)	1	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;2.75e-23)|all cancers(36;2.47e-21)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00314)		TGCAGTGCCAAGGTTATGTGG	0.547000													21	4					0	0	0.008871	0	0
TRIO	7204	broad.mit.edu	37	5	14381318	14381318	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:14381318A>G	uc003jff.2	+	21	3533	c.3527A>G	c.(3526-3528)CAG>CGG	p.Q1176R	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.Q1127R|TRIO_uc003jfh.1_Missense_Mutation_p.Q825R	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1176	Spectrin 4.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					CAGCACACCCAGGAGCTCCTG	0.493000													5	105					0	0	0.001168	0	0
MYO10	4651	broad.mit.edu	37	5	16764479	16764479	+	Silent	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:16764479G>T	uc003jft.3	-	12	1674	c.1206C>A	c.(1204-1206)GCC>GCA	p.A402A	MYO10_uc010itx.2_Silent_p.A25A	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	402	Myosin head-like.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						ACAGAGCCATGGCCAGGGAGT	0.547000													37	54					1.60099e-16	1.93452e-16	0.004878	1	0
ADAMTS12	81792	broad.mit.edu	37	5	33561191	33561191	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:33561191G>C	uc003jia.1	-	20	4229	c.4066C>G	c.(4066-4068)CCT>GCT	p.P1356A	ADAMTS12_uc010iuq.1_Missense_Mutation_p.P1271A	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1356	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTTTTTGCAGGGTCAGGTCTC	0.572000										HNSCC(64;0.19)			60	96					0	0	0.014410	0	0
PARP8	79668	broad.mit.edu	37	5	50137860	50137860	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:50137860A>T	uc003jon.3	+	27	2705	c.2523A>T	c.(2521-2523)AAA>AAT	p.K841N	PARP8_uc011cpz.1_Missense_Mutation_p.K733N|PARP8_uc003joo.2_Missense_Mutation_p.K841N|PARP8_uc003jop.2_Missense_Mutation_p.K799N	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	841	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				GCATTCACAAAGAGATCCTCC	0.358000													30	46					0	0	0.004289	0	0
GPR98	84059	broad.mit.edu	37	5	89989974	89989974	+	Silent	SNP	A	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:89989974A>T	uc003kju.2	+	33	7497	c.7401A>T	c.(7399-7401)ACA>ACT	p.T2467T	GPR98_uc003kjt.2_Silent_p.T173T|GPR98_uc003kjv.2_Silent_p.T67T	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2467	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGGATGACATCATGGATCA	0.488000													22	28					0	0	0.010504	0	0
PCDHGC4	56098	broad.mit.edu	37	5	140865325	140865325	+	Silent	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:140865325C>G	uc003lky.1	+	1	585	c.585C>G	c.(583-585)CTC>CTG	p.L195L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc011dbb.1_Silent_p.L195L	NM_018928	NP_061751	Q9Y5F7	PCDGL_HUMAN	protocadherin gamma subfamily C, 4 isoform 1	195	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGAGCTGCTCCTGGAGAAGC	0.582000													23	43					0	0	0.003330	0	0
RANBP9	10048	broad.mit.edu	37	6	13622632	13622632	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:13622632A>G	uc003nbb.2	-	14	2211	c.2152T>C	c.(2152-2154)TCC>CCC	p.S718P	RANBP9_uc003nba.2_Missense_Mutation_p.S377P	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	718	Interaction with FMR1.				axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			AATGCGCAGGATCCAATTCCT	0.473000													3	102					0	0	0.000602	0	0
FRS3	10817	broad.mit.edu	37	6	41739084	41739084	+	Missense_Mutation	SNP	C	T	T	rs137923290	byFrequency	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:41739084C>T	uc003orc.1	-	7	996	c.752G>A	c.(751-753)CGG>CAG	p.R251Q		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	251					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CACCATGTGCCGCCGAGCAGG	0.637000													23	38					0	0	0.002780	0	0
CRIP3	401262	broad.mit.edu	37	6	43275360	43275360	+	Silent	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:43275360T>C	uc010jyn.1	-	4	318	c.318A>G	c.(316-318)CAA>CAG	p.Q106Q	CRIP3_uc003ouu.1_Silent_p.Q106Q	NM_206922	NP_996805	Q6Q6R5	CRIP3_HUMAN	cysteine-rich protein 3	106						cytoplasm	zinc ion binding			skin(1)	1			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			TTTTCTTGCCTTGGGGGAGGC	0.642000													39	60					0	0	0.006230	0	0
PKHD1	5314	broad.mit.edu	37	6	51824773	51824773	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:51824773A>C	uc003pah.1	-	36	6079	c.5803T>G	c.(5803-5805)TTT>GTT	p.F1935V	PKHD1_uc003pai.2_Missense_Mutation_p.F1935V	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1935	Extracellular (Potential).|G8 1.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CTTTCAGGAAACCAGCTGTGA	0.423000											OREG0017492	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	153					0	0	0.004672	0	0
OGFRL1	79627	broad.mit.edu	37	6	72011098	72011098	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:72011098C>A	uc003pfx.1	+	7	865	c.702C>A	c.(700-702)CAC>CAA	p.H234Q		NM_024576	NP_078852	Q5TC84	OGRL1_HUMAN	opioid growth factor receptor-like 1	234						membrane	receptor activity				0						GGTCCCAGCACAACTATTTAA	0.358000													212	386					6.16554e-93	8.03599e-93	0.014410	1	0
SYNE1	23345	broad.mit.edu	37	6	152658075	152658075	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr6:152658075C>G	uc010kiw.2	-	76	13031	c.12429G>C	c.(12427-12429)TGG>TGC	p.W4143C	SYNE1_uc003qot.3_Missense_Mutation_p.W4072C|SYNE1_uc003qou.3_Missense_Mutation_p.W4143C|SYNE1_uc010kja.1_Missense_Mutation_p.W848C|SYNE1_uc010kiz.2_5'Flank	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4143	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCAGGTAAATCCAGAGCTCAG	0.458000										HNSCC(10;0.0054)			19	46					0	0	0.007413	0	0
RNF216	54476	broad.mit.edu	37	7	5781025	5781025	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr7:5781025A>G	uc003soy.1	-	4	642	c.452T>C	c.(451-453)CTG>CCG	p.L151P	RNF216_uc010ksz.1_5'UTR|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.L208P	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	151					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		ATTTGATAACAGCTCTGTCTC	0.458000													93	196					0	0	0.014410	0	0
OR2A14	135941	broad.mit.edu	37	7	143826220	143826220	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr7:143826220G>T	uc011kua.1	+	1	15	c.15G>T	c.(13-15)AAG>AAT	p.K5N		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AAGGCAACAAGACATGGATCA	0.498000													22	25					2.37509e-13	2.84032e-13	0.010504	1	0
C9orf150	286343	broad.mit.edu	37	9	12821680	12821680	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr9:12821680G>T	uc003zkw.2	+	2	1311	c.608G>T	c.(607-609)AGT>ATT	p.S203I		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	206											0				GBM - Glioblastoma multiforme(1;1.64e-13)		GACCAATTCAGTGACAGCTCC	0.507000													77	117					5.16434e-52	6.58311e-52	0.014410	1	0
TAF1	6872	broad.mit.edu	37	X	70643918	70643918	+	Splice_Site	SNP	T	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chrX:70643918T>C	uc004dzu.3	+	31	4716	c.4665_splice	c.e31+2	p.K1555_splice	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Splice_Site_p.K1576_splice|TAF1_uc004dzv.3_Splice_Site_p.K729_splice|TAF1_uc010nld.1_Splice_Site|TAF1_uc010nle.1_Splice_Site|TAF1_uc010nlf.1_Splice_Site|TAF1_uc004dzx.2_Splice_Site|TAF1_uc004dzy.2_Splice_Site|TAF1_uc004dzw.1_Splice_Site	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2						G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				ATACGTAAGGTGAGTGAGTGA	0.373000													44	15					0	0	0.010771	0	0
ODZ1	10178	broad.mit.edu	37	X	123518587	123518587	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chrX:123518587G>C	uc004euj.2	-	29	6237	c.6173C>G	c.(6172-6174)ACC>AGC	p.T2058S	ODZ1_uc011muj.1_Missense_Mutation_p.T2064S|ODZ1_uc010nqy.2_Missense_Mutation_p.T2065S	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2058	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGGCAAAGGGGTTTCATTGAT	0.393000													62	14					0	0	0.014410	0	0
ERCC5	2073	broad.mit.edu	37	13	103510748	103510748	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr13:103510748delT	uc001vpw.2	+	6	1095	c.652delT	c.(652-654)TTAfs	p.L218fs	ERCC5_uc001vpu.1_Frame_Shift_Del_p.L672fs|ERCC5_uc010tjb.1_Frame_Shift_Del_p.L218fs|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Frame_Shift_Del_p.L50fs	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	218					negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CAGAAGAACATTATTTGAAGC	0.373			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				51	95	---	---	---	---					
WDR33	55339	broad.mit.edu	37	2	128484249	128484249	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr2:128484249delT	uc002tpg.1	-	8	1010	c.827delA	c.(826-828)AAGfs	p.K276fs		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	276	WD 4.				postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTGCCCAGTCTTGGGATCCCA	0.468													38	98	---	---	---	---					
DIDO1	11083	broad.mit.edu	37	20	61537401	61537402	+	Frame_Shift_Ins	INS	-	T	T	rs140153728		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr20:61537401_61537402insT	uc002ydr.1	-	6	1689_1690	c.1425_1426insA	c.(1423-1428)AAAGAGfs	p.K475fs	DIDO1_uc002yds.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc002ydt.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc002ydu.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc002ydv.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc002ydw.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc002ydx.1_Frame_Shift_Ins_p.K475fs|DIDO1_uc011aao.1_Frame_Shift_Ins_p.K475fs	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	475_476					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					ACTGTGGTCTCTTTTTTTTCTG	0.490													7	202	---	---	---	---					
SMARCB1	6598	broad.mit.edu	37	22	24167461	24167461	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr22:24167461delA	uc002zyb.2	+	7	1052	c.845delA	c.(844-846)GACfs	p.D282fs	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Frame_Shift_Del_p.D273fs|SMARCB1_uc002zyd.2_Frame_Shift_Del_p.D291fs	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	282	2.|2 X approximate tandem repeats.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(6)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				TTTGAGTGGGACATGTCAGAG	0.537			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				57	18	---	---	---	---					
POLQ	10721	broad.mit.edu	37	3	121207671	121207673	+	In_Frame_Del	DEL	CTT	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr3:121207671_121207673delCTT	uc003eee.3	-	16	4234_4236	c.4105_4107delAAG	c.(4105-4107)AAGdel	p.K1369del	POLQ_uc003eed.2_In_Frame_Del_p.K541del	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1369					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TGTGACACTCCTTCTGAAAAGAG	0.448								DNA_polymerases_(catalytic_subunits)					13	275	---	---	---	---					
SPEF2	79925	broad.mit.edu	37	5	35771741	35771743	+	In_Frame_Del	DEL	GAA	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:35771741_35771743delGAA	uc003jjo.2	+	27	3943_3945	c.3832_3834delGAA	c.(3832-3834)GAAdel	p.E1280del	SPEF2_uc003jjp.1_In_Frame_Del_p.E766del|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1280					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GAGGCTTATGGAAGAAGAAAAAG	0.399													12	45	---	---	---	---					
NAIP	4671	broad.mit.edu	37	5	70406506	70406507	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:70406506_70406507delAT	uc003kat.1	-	1	1357_1358	c.91_92delAT	c.(91-93)ATGfs	p.M31fs		NM_022892	NP_075043	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	419					anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		AAGCAAAGACATGTGGCGGAAA	0.500													5	5	---	---	---	---					
TRIM41	90933	broad.mit.edu	37	5	180661231	180661232	+	Frame_Shift_Ins	INS	-	C	C	rs138245799		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr5:180661231_180661232insC	uc003mne.1	+	6	2043_2044	c.1349_1350insC	c.(1348-1350)CGCfs	p.R450fs	TRIM41_uc003mnc.1_3'UTR|TRIM41_uc003mnd.1_Frame_Shift_Ins_p.R450fs|TRIM41_uc003mnf.1_RNA|TRIM41_uc003mng.1_Frame_Shift_Ins_p.R30fs	NM_033549	NP_291027	Q8WV44	TRI41_HUMAN	tripartite motif-containing 41 isoform 1	450	B30.2/SPRY.					cytoplasm|nucleus	ligase activity|protein binding|zinc ion binding				0	all_cancers(89;9.17e-06)|all_epithelial(37;1.19e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCCCTGACCGCCGGGGGGTCC	0.698													38	65	---	---	---	---					
IFNA2	3440	broad.mit.edu	37	9	21385064	21385067	+	Frame_Shift_Del	DEL	GATT	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr9:21385064_21385067delGATT	uc003zpb.2	-	1	330_333	c.262_265delAATC	c.(262-267)AATCTCfs	p.N88fs		NM_000605	NP_000596	P01563	IFNA2_HUMAN	interferon, alpha 2 precursor	88_89					blood coagulation|cell-cell signaling|induction of apoptosis|inflammatory response|negative regulation of interleukin-13 secretion|negative regulation of interleukin-5 secretion|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of transcription, DNA-dependent|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			breast(1)	1				Lung(24;7.66e-27)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.0173)	Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	GTGCTGAAGAGATTGAAGATCTGC	0.490													87	128	---	---	---	---					
FOXE1	2304	broad.mit.edu	37	9	100616701	100616706	+	In_Frame_Del	DEL	GCCGCC	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chr9:100616701_100616706delGCCGCC	uc004axu.2	+	1	1165_1170	c.505_510delGCCGCC	c.(505-510)GCCGCCdel	p.AA177del		NM_004473	NP_004464	O00358	FOXE1_HUMAN	forkhead box E1	177_178	Ala-rich.				cell migration|embryonic organ morphogenesis|hair follicle morphogenesis|hard palate development|lens morphogenesis in camera-type eye|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|peripheral nervous system development|pharynx development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|soft palate development|thymus development|thyroid gland development|thyroid hormone generation	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		Acute lymphoblastic leukemia(62;0.158)				Ggctgccgcagccgccgccgccgccg	0.573													4	8	---	---	---	---					
TDGF3	6998	broad.mit.edu	37	X	109764504	109764514	+	RNA	DEL	CAGCATTTGGC	-	-			TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	g.chrX:109764504_109764514delCAGCATTTGGC	uc004eos.1	+	1		c.965_975delCAGCATTTGGC				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						TCAGAGATGACAGCATTTGGCCCCAGGAGGA	0.555													26	8	---	---	---	---					
