Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf86	199990	broad.mit.edu	37	1	2125303	2125303	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr1:2125303G>A	uc001aiy.2	-	3	271	c.245C>T	c.(244-246)CCC>CTC	p.P82L	C1orf86_uc001aiv.1_RNA|C1orf86_uc001aiw.1_RNA|C1orf86_uc001aix.1_Missense_Mutation_p.P78S	NM_182533	NP_872339	Q6NZ36	CA086_HUMAN	hypothetical protein LOC199990 isoform 2	82											0	all_cancers(77;0.000134)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.09e-37)|OV - Ovarian serous cystadenocarcinoma(86;1.5e-23)|GBM - Glioblastoma multiforme(42;1.61e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00437)|STAD - Stomach adenocarcinoma(132;0.0134)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		AAAGGTCTTGGGTCCGACAGT	0.672000													3	77					0	0	0.004672	0	0
ACOT7	11332	broad.mit.edu	37	1	6399500	6399500	+	Silent	SNP	G	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr1:6399500G>T	uc001ams.2	-	3	598	c.441C>A	c.(439-441)ATC>ATA	p.I147I	ACOT7_uc010nzq.1_Silent_p.I32I|ACOT7_uc001amt.2_Silent_p.I137I|ACOT7_uc001amu.2_RNA|ACOT7_uc001amv.2_RNA|ACOT7_uc001amq.2_Silent_p.I96I|ACOT7_uc001amr.2_Silent_p.I117I	NM_181864	NP_863654	O00154	BACH_HUMAN	acyl-CoA thioesterase 7 isoform hBACHb	147	Acyl coenzyme A hydrolase 1.					mitochondrion|nucleus	carboxylesterase activity|fatty-acyl-CoA binding|palmitoyl-CoA hydrolase activity				0	Ovarian(185;0.0634)|all_lung(157;0.175)	all_cancers(23;1.42e-38)|all_epithelial(116;3.96e-23)|all_lung(118;3.69e-08)|Lung NSC(185;8.52e-07)|all_hematologic(16;6.92e-06)|Colorectal(325;4.53e-05)|Acute lymphoblastic leukemia(12;5e-05)|all_neural(13;0.000164)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;9.16e-37)|GBM - Glioblastoma multiforme(13;5.89e-29)|OV - Ovarian serous cystadenocarcinoma(86;7.63e-19)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;2.06e-05)|Kidney(185;7.74e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00129)|BRCA - Breast invasive adenocarcinoma(365;0.00132)|STAD - Stomach adenocarcinoma(132;0.00195)|READ - Rectum adenocarcinoma(331;0.0481)		TACCTGTGAGGATGTTTTCGG	0.597000													15	48					4.7546e-09	5.18684e-09	0.028581	1	0
SSX2IP	117178	broad.mit.edu	37	1	85124036	85124036	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr1:85124036A>T	uc001dkh.2	-	10	1318	c.1043T>A	c.(1042-1044)ATT>AAT	p.I348N	SSX2IP_uc001dkf.2_Missense_Mutation_p.I321N|SSX2IP_uc001dkg.2_RNA|SSX2IP_uc010orz.1_Missense_Mutation_p.I321N|SSX2IP_uc001dki.2_Missense_Mutation_p.I348N|SSX2IP_uc010osa.1_Missense_Mutation_p.I321N|SSX2IP_uc001dkj.2_Missense_Mutation_p.I348N|SSX2IP_uc009wci.2_Intron|SSX2IP_uc001dkk.1_Missense_Mutation_p.I344N	NM_014021	NP_054740	Q9Y2D8	ADIP_HUMAN	synovial sarcoma, X breakpoint 2 interacting	348					cell adhesion	nucleus|protein complex				ovary(2)	2				all cancers(265;0.0053)|Epithelial(280;0.0214)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		ACTTTTCAAAATTCTCCACTG	0.408000													21	51					0	0	0.014323	0	0
MYBPHL	343263	broad.mit.edu	37	1	109839700	109839700	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr1:109839700G>C	uc001dxk.1	-	4	592	c.542C>G	c.(541-543)ACG>AGG	p.T181R	MYBPHL_uc010ovh.1_Missense_Mutation_p.T158R|MYBPHL_uc001dxl.2_Intron	NM_001010985	NP_001010985	A2RUH7	MBPHL_HUMAN	myosin binding protein H-like	181	Fibronectin type-III.									ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(203;0.00519)|all_epithelial(167;0.00575)|Lung NSC(277;0.00822)		Colorectal(144;0.0306)|Lung(183;0.0681)|COAD - Colon adenocarcinoma(174;0.117)|Epithelial(280;0.197)|all cancers(265;0.225)		CTTCTGCACCGTGTATCCCAG	0.577000													51	103					0	0	0.014410	0	0
SMG5	23381	broad.mit.edu	37	1	156236156	156236156	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr1:156236156T>C	uc001foc.3	-	12	1420	c.1271A>G	c.(1270-1272)AAG>AGG	p.K424R	SMG5_uc009wrv.2_5'UTR	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	424					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					CACAGGTTCCTTGGACTCTGG	0.582000													28	48					0	0	0.030593	0	0
INTS5	80789	broad.mit.edu	37	11	62417117	62417117	+	Silent	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr11:62417117A>G	uc001nud.2	-	2	488	c.435T>C	c.(433-435)AGT>AGC	p.S145S		NM_030628	NP_085131	Q6P9B9	INT5_HUMAN	integrator complex subunit 5	145					snRNA processing	integral to membrane|integrator complex	protein binding			ovary(2)	2						TGGACCATGCACTAATCACAG	0.572000													38	60					0	0	0.023175	0	0
ARAP1	116985	broad.mit.edu	37	11	72423355	72423355	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr11:72423355A>G	uc001osu.2	-	7	1097	c.908T>C	c.(907-909)TTG>TCG	p.L303S	ARAP1_uc001osv.2_Missense_Mutation_p.L303S|ARAP1_uc001osr.2_Missense_Mutation_p.L63S|ARAP1_uc001oss.2_Missense_Mutation_p.L58S|ARAP1_uc009yth.2_Missense_Mutation_p.L58S|ARAP1_uc010rre.1_Missense_Mutation_p.L58S	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	303					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GGGCAAGGACAAGCTCAGGCT	0.672000													5	16					0	0	0.014758	0	0
PGR	5241	broad.mit.edu	37	11	100933334	100933334	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr11:100933334G>A	uc001pgh.2	-	4	2799	c.2056C>T	c.(2056-2058)CCA>TCA	p.P686S	PGR_uc001pgg.2_Missense_Mutation_p.P67S|PGR_uc001pgi.2_Intron|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	686	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	TTGATCAGTGGTGGAATCAAC	0.458000													5	221					0	0	0.021553	0	0
ZW10	9183	broad.mit.edu	37	11	113628545	113628545	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr11:113628545G>A	uc001poe.2	-	7	801	c.764C>T	c.(763-765)CCG>CTG	p.P255L	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	255	Interaction with RINT1.				cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		AGATGCCAGCGGCCTAAGGAT	0.338000													17	40					0	0	0.006122	0	0
SKA3	221150	broad.mit.edu	37	13	21732196	21732196	+	Silent	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr13:21732196A>G	uc001unt.2	-	7	1078	c.984T>C	c.(982-984)ACT>ACC	p.T328T	SKA3_uc001unv.2_Silent_p.T246T|SKA3_uc001unu.2_Silent_p.T328T	NM_145061	NP_659498	Q8IX90	SKA3_HUMAN	SKA3	328					cell division|chromosome segregation|mitosis|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytoplasm|spindle microtubule	protein binding				0						AAACCAACGAAGTACGATCTT	0.333000													38	119					0	0	0.021022	0	0
ITGBL1	9358	broad.mit.edu	37	13	102235670	102235670	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr13:102235670G>C	uc001vpb.2	+	6	1051	c.832G>C	c.(832-834)GCT>CCT	p.A278P	ITGBL1_uc010agb.2_Missense_Mutation_p.A229P|ITGBL1_uc001vpc.3_Missense_Mutation_p.A137P	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	278	VI.|Cysteine-rich tandem repeats.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGACTGTAGAGCTGTCTATGA	0.388000													70	145					0	0	0.014410	0	0
OR4M1	441670	broad.mit.edu	37	14	20248681	20248681	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr14:20248681C>T	uc010tku.1	+	1	200	c.200C>T	c.(199-201)GCC>GTC	p.A67V		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTAATCTGGCCCTCCTTGAT	0.418000													13	796					0	0	0.028581	0	0
AKAP6	9472	broad.mit.edu	37	14	33204952	33204952	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr14:33204952T>A	uc001wrq.2	+	11	3406	c.3236T>A	c.(3235-3237)CTG>CAG	p.L1079Q		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1079	Spectrin 2.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AGTGGAAGCCTGGTAAGGCAG	0.488000													23	44					0	0	0.014323	0	0
DAAM1	23002	broad.mit.edu	37	14	59791109	59791109	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr14:59791109T>A	uc001xdz.1	+	8	1051	c.926T>A	c.(925-927)CTG>CAG	p.L309Q	DAAM1_uc001xea.1_Missense_Mutation_p.L309Q|DAAM1_uc001xeb.1_Missense_Mutation_p.L309Q	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	309	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		TATGAATTTCTGATGTTAGGA	0.308000													27	64					0	0	0.010818	0	0
MGA	23269	broad.mit.edu	37	15	42005411	42005411	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr15:42005411T>A	uc001zog.1	+	9	3238	c.3147T>A	c.(3145-3147)AAT>AAA	p.N1049K	MGA_uc010ucy.1_Missense_Mutation_p.N1049K|MGA_uc010ucz.1_Missense_Mutation_p.N1049K	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	1049						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CCTGCAACAATGACTTCTGTC	0.463000													27	63					0	0	0.037714	0	0
VPS13C	54832	broad.mit.edu	37	15	62167108	62167108	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr15:62167108T>A	uc002agz.2	-	77	10455	c.10381A>T	c.(10381-10383)ATT>TTT	p.I3461F	VPS13C_uc002aha.2_Missense_Mutation_p.I3418F|VPS13C_uc002ahb.1_Missense_Mutation_p.I3461F|VPS13C_uc002ahc.1_Missense_Mutation_p.I3418F	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	3461					protein localization					ovary(2)	2						CTCACTCCAATCACTAACCCC	0.299000													41	78					0	0	0.014410	0	0
ZZEF1	23140	broad.mit.edu	37	17	3977517	3977517	+	Silent	SNP	C	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr17:3977517C>T	uc002fxe.2	-	24	3676	c.3612G>A	c.(3610-3612)CTG>CTA	p.L1204L		NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1204							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTGTAAATCCAGCCCCCAAG	0.577000													6	318					0	0	0.021553	0	0
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	G	G	rs121912666		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr17:7578190T>G	uc002gim.2	-	6	853	c.659A>C	c.(658-660)TAT>TCT	p.Y220S	TP53_uc002gig.1_Missense_Mutation_p.Y220S|TP53_uc002gih.2_Missense_Mutation_p.Y220S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.Y88S|TP53_uc010cng.1_Missense_Mutation_p.Y88S|TP53_uc002gii.1_Missense_Mutation_p.Y88S|TP53_uc010cnh.1_Missense_Mutation_p.Y220S|TP53_uc010cni.1_Missense_Mutation_p.Y220S|TP53_uc002gij.2_Missense_Mutation_p.Y220S|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.Y127S|TP53_uc002gio.2_Missense_Mutation_p.Y88S|TP53_uc010vug.1_Missense_Mutation_p.Y181S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	220	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> N (in sporadic cancers; somatic mutation).|Y -> H (in sporadic cancers; somatic mutation).|Y -> S (in a brain tumor with no family history; germline mutation and in sporadic cancers; somatic mutation).|Y -> F (in a sporadic cancer; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y220C(205)|p.Y220N(12)|p.Y220H(9)|p.Y220S(9)|p.0?(7)|p.Y220fs*27(4)|p.Y220*(3)|p.Y220D(2)|p.Y127C(2)|p.D208fs*1(1)|p.Y220_P223delYEPP(1)|p.?(1)|p.V218_E224delVPYEPPE(1)|p.V218_E221delVPYE(1)|p.V218_Y220delVPY(1)|p.Y220fs*25(1)|p.V216_Y220delVVVPY(1)|p.Y220fs*1(1)|p.Y220fs*2(1)|p.V218fs*26(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGCGGCTCATAGGGCACCAC	0.557000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			7	45					0	0	0.004482	0	0
SLC47A1	55244	broad.mit.edu	37	17	19451346	19451346	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr17:19451346A>G	uc002gvy.1	+	4	441	c.355A>G	c.(355-357)AGT>GGT	p.S119G	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Missense_Mutation_p.S119G|SLC47A1_uc010vyz.1_Missense_Mutation_p.S96G|SLC47A1_uc010cqp.1_Missense_Mutation_p.S119G|SLC47A1_uc010cqq.1_5'UTR	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					CCTGCAGCGGAGTGCGCTCGT	0.612000													48	40					0	0	0.014410	0	0
CHAD	1101	broad.mit.edu	37	17	48546019	48546019	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr17:48546019C>A	uc010dbr.2	-	1	209	c.156G>T	c.(154-156)AAG>AAT	p.K52N	ACSF2_uc002iqu.2_Intron|ACSF2_uc010wml.1_Intron|ACSF2_uc010wmm.1_Intron|ACSF2_uc010wmn.1_Intron|ACSF2_uc010wmo.1_Intron|CHAD_uc010dbs.2_Missense_Mutation_p.K52N|ACSF2_uc010dbt.1_Intron	NM_001267	NP_001258	O15335	CHAD_HUMAN	chondroadherin precursor	52	LRRNT.				regulation of cell growth	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(2)|central_nervous_system(1)	3	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GCAGCTTGGTCTTCTCTGACA	0.622000													14	58					6.72482e-11	7.47203e-11	0.024245	1	0
LILRB4	11006	broad.mit.edu	37	19	55175654	55175654	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr19:55175654A>C	uc002qgp.2	+	4	735	c.373A>C	c.(373-375)ACC>CCC	p.T125P	LILRB4_uc002qgq.2_Missense_Mutation_p.T125P|LILRB4_uc010ers.1_Missense_Mutation_p.T38P|LILRB4_uc002qgr.2_Missense_Mutation_p.T166P|LILRB4_uc010ert.2_Missense_Mutation_p.T166P|LILRB4_uc010eru.2_Missense_Mutation_p.T154P	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	125	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CAGTAAACCCACCCTTTCAGC	0.572000													5	98					0	0	0.006214	0	0
POMC	5443	broad.mit.edu	37	2	25387619	25387619	+	Missense_Mutation	SNP	C	T	T	rs146551109		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:25387619C>T	uc002rfy.1	-	3	286	c.23G>A	c.(22-24)CGC>CAC	p.R8H	POMC_uc002rfz.1_Missense_Mutation_p.R8H|POMC_uc002rga.1_Missense_Mutation_p.R8H	NM_001035256	NP_001030333	P01189	COLI_HUMAN	proopiomelanocortin preproprotein	8					cell-cell signaling|cellular nitrogen compound metabolic process|cellular pigmentation|generation of precursor metabolites and energy|hormone biosynthetic process|negative regulation of tumor necrosis factor production|neuropeptide signaling pathway|peptide hormone processing|positive regulation of transcription from RNA polymerase II promoter|regulation of appetite|regulation of blood pressure	extracellular space|stored secretory granule	hormone activity|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Hydrocortisone(DB00741)|Loperamide(DB00836)|Trilostane(DB01108)	GGCCCCCGAGCGGCTGCAGCA	0.612000													23	52					0	0	0.021523	0	0
BIRC6	57448	broad.mit.edu	37	2	32656054	32656054	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:32656054A>C	uc010ezu.2	+	12	3278	c.3144A>C	c.(3142-3144)GAA>GAC	p.E1048D		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	1048					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GCTGGGTAGAAGTTCAACAAG	0.483000													19	39					0	0	0.007413	0	0
NFE2L2	4780	broad.mit.edu	37	2	178098956	178098956	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:178098956A>C	uc002ulh.3	-	2	644	c.89T>G	c.(88-90)CTT>CGT	p.L30R	NFE2L2_uc002ulg.3_Missense_Mutation_p.L14R|NFE2L2_uc010zfa.1_Missense_Mutation_p.L14R|NFE2L2_uc002uli.3_Missense_Mutation_p.L14R|NFE2L2_uc010fra.2_Missense_Mutation_p.L14R|NFE2L2_uc010frb.2_Missense_Mutation_p.L14R	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	30					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			ACTTACTCCAAGATCTATATC	0.363000			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			6	51					0	0	0.021553	0	0
AGPS	8540	broad.mit.edu	37	2	178301498	178301498	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:178301498T>G	uc002ull.2	+	4	495	c.448T>G	c.(448-450)TTA>GTA	p.L150V	AGPS_uc010zfb.1_Missense_Mutation_p.L60V	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	150					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			CTAGGCATCCTTAAATCCTAG	0.303000													7	96					0	0	0.029380	0	0
SSFA2	6744	broad.mit.edu	37	2	182786760	182786760	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:182786760G>C	uc002uoi.2	+	16	3618	c.3296G>C	c.(3295-3297)GGA>GCA	p.G1099A	SSFA2_uc002uoh.2_Missense_Mutation_p.G1099A|SSFA2_uc002uoj.2_Missense_Mutation_p.G1077A|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.G924A|SSFA2_uc002uol.2_Missense_Mutation_p.G946A|SSFA2_uc002uom.2_Missense_Mutation_p.G563A	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	1099						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			ATTCCTCCTGGAGAAAGCTCA	0.438000													27	88					0	0	0.027356	0	0
ZFAND2B	130617	broad.mit.edu	37	2	220072989	220072989	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:220072989T>G	uc002vka.2	+	5	618	c.446T>G	c.(445-447)ATC>AGC	p.I149S	ZFAND2B_uc010zkt.1_Missense_Mutation_p.I149S|ZFAND2B_uc010fwd.1_Missense_Mutation_p.I149S|ZFAND2B_uc002vjy.1_Missense_Mutation_p.I149S|ZFAND2B_uc002vjz.1_Missense_Mutation_p.I149S|ZFAND2B_uc002vkb.1_Missense_Mutation_p.I40S	NM_138802	NP_620157	Q8WV99	ZFN2B_HUMAN	zinc finger, AN1-type domain 2B	149						endoplasmic reticulum	protein binding|zinc ion binding				0		Renal(207;0.0915)		Epithelial(149;1.16e-06)|all cancers(144;0.000191)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTGCTGCCATCTCCAGAGCA	0.532000													16	26					0	0	0.033300	0	0
UGT1A3	54659	broad.mit.edu	37	2	234637943	234637943	+	Silent	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:234637943G>A	uc002vuy.2	+	1	171	c.171G>A	c.(169-171)CAG>CAA	p.Q57Q	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Silent_p.Q57Q	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	57					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		GAGGCCACCAGGCAGTGGTCC	0.552000													20	45					0	0	0.007413	0	0
ASB1	51665	broad.mit.edu	37	2	239344354	239344354	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:239344354G>A	uc002vyg.2	+	3	280	c.194G>A	c.(193-195)CGC>CAC	p.R65H		NM_001040445	NP_001035535	Q9Y576	ASB1_HUMAN	ankyrin repeat and SOCS box-containing protein	65	ANK 1.				intracellular signal transduction|negative regulation of cytokine biosynthetic process						0		all_epithelial(40;2.65e-14)|Breast(86;7.61e-05)|Renal(207;0.00183)|all_lung(227;0.0283)|Ovarian(221;0.0365)|Lung NSC(271;0.0941)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;4.5e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)		TCCTGCAGCCGCATCAACGAG	0.652000													3	29					0	0	0.004672	0	0
LOC728323	728323	broad.mit.edu	37	2	243061143	243061143	+	RNA	SNP	A	G	G	rs117509304	by1000genomes	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr2:243061143A>G	uc010zpd.1	+	4		c.381A>G			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_RNA	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						CTTGGGAGAAACCTTTAATCG	0.358000													4	131					0	0	0.009096	0	0
RBPJL	11317	broad.mit.edu	37	20	43940944	43940944	+	Silent	SNP	C	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr20:43940944C>T	uc002xns.2	+	6	600	c.528C>T	c.(526-528)CGC>CGT	p.R176R	RBPJL_uc002xnt.2_Silent_p.R176R	NM_014276	NP_055091	Q9UBG7	RBPJL_HUMAN	recombining binding protein L	176					signal transduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				tggtgctgcgCGGGGGCCGGG	0.502000													12	25					0	0	0.016723	0	0
TOP3B	8940	broad.mit.edu	37	22	22327036	22327036	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr22:22327036G>T	uc002zvs.2	-	4	692	c.257C>A	c.(256-258)CCC>CAC	p.P86H	TOP3B_uc010gtl.2_Missense_Mutation_p.P86H|TOP3B_uc002zvt.3_Missense_Mutation_p.P86H	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	86	Toprim.				DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		CTTCTCCGTGGGAGCTTGGCT	0.562000											OREG0026347	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	32					3.6726e-16	4.23762e-16	0.021523	1	0
CABIN1	23523	broad.mit.edu	37	22	24483456	24483456	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr22:24483456C>A	uc002zzi.1	+	23	3442	c.3315C>A	c.(3313-3315)GAC>GAA	p.D1105E	CABIN1_uc002zzj.1_Missense_Mutation_p.D1055E|CABIN1_uc002zzl.1_Missense_Mutation_p.D1105E	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1105					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GCATTCAGGACAAGCTGAACT	0.547000													10	34					9.31168e-06	9.9768e-06	0.016723	1	0
TOP2B	7155	broad.mit.edu	37	3	25651158	25651158	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr3:25651158A>C	uc003cdj.2	-	29	3817	c.3817T>G	c.(3817-3819)TTC>GTC	p.F1273V	TOP2B_uc011awm.1_Missense_Mutation_p.F130V|TOP2B_uc010hff.1_Missense_Mutation_p.F139V	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1278					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GCTCCACTGAATTCTTCATCA	0.393000													3	9					0	0	0.004672	0	0
C3orf23	285343	broad.mit.edu	37	3	44438258	44438258	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr3:44438258C>T	uc010him.2	+	8	1062	c.817C>T	c.(817-819)CGT>TGT	p.R273C	C3orf23_uc003cnd.3_Missense_Mutation_p.R273C|C3orf23_uc003cne.3_Missense_Mutation_p.R129C	NM_173826	NP_776187	Q8N3R3	CC023_HUMAN	hypothetical protein LOC285343 isoform 1	273						mitochondrion				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(197;0.0468)|Kidney(197;0.0585)		ATTTACAGACCGTTCTGGCAT	0.408000													47	58					0	0	0.014410	0	0
CCDC58	131076	broad.mit.edu	37	3	122102042	122102042	+	Silent	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr3:122102042A>G	uc003eey.2	-	1	33	c.30T>C	c.(28-30)TGT>TGC	p.C10C	FAM162A_uc011bjq.1_5'Flank|FAM162A_uc003eez.2_5'Flank	NM_001017928	NP_001017928	Q4VC31	CCD58_HUMAN	coiled-coil domain containing 58	10											0				GBM - Glioblastoma multiforme(114;0.148)		CGAACTCCTCACAGTTCACAC	0.602000													13	87					0	0	0.016723	0	0
PIK3CB	5291	broad.mit.edu	37	3	138409857	138409857	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr3:138409857A>G	uc011bmq.1	-	13	2021	c.2021T>C	c.(2020-2022)CTA>CCA	p.L674P	PIK3CB_uc011bmn.1_Missense_Mutation_p.L186P|PIK3CB_uc011bmo.1_Missense_Mutation_p.L120P|PIK3CB_uc011bmp.1_Missense_Mutation_p.L261P	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	674	PI3K helical.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						ATGCCAAAATAGAAACTGCCC	0.353000													53	163					0	0	0.014410	0	0
PDE6B	5158	broad.mit.edu	37	4	619837	619837	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr4:619837A>C	uc003gap.2	+	1	475	c.422A>C	c.(421-423)CAC>CCC	p.H141P	PDE6B_uc003gao.3_Missense_Mutation_p.H141P	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	141	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						GTCGTGGGCCACGTGGCTCAG	0.642000													4	4					0	0	0.014758	0	0
CYFIP2	26999	broad.mit.edu	37	5	156819902	156819902	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr5:156819902C>T	uc003lwq.2	+	33	3794	c.3656C>T	c.(3655-3657)GCC>GTC	p.A1219V	CYFIP2_uc011ddn.1_Missense_Mutation_p.A1193V|CYFIP2_uc011ddo.1_Missense_Mutation_p.A1023V|CYFIP2_uc003lwr.2_Missense_Mutation_p.A1219V|CYFIP2_uc003lws.2_Missense_Mutation_p.A1219V|CYFIP2_uc003lwt.2_Missense_Mutation_p.A1122V|CYFIP2_uc011ddp.1_Missense_Mutation_p.A953V|CYFIP2_uc003lwv.2_Missense_Mutation_p.A174V	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1244					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAGGTTTTTGCCATCCTGAAC	0.517000													4	104					0	0	0.009096	0	0
SCAND3	114821	broad.mit.edu	37	6	28543371	28543371	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr6:28543371C>A	uc003nlo.2	-	3	1729	c.1111G>T	c.(1111-1113)GTT>TTT	p.V371F		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	371	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGAACTAACTTCCTTAATT	0.343000													55	122					1.39843e-22	1.67811e-22	0.014410	1	0
TBP	6908	broad.mit.edu	37	6	170871043	170871043	+	Silent	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr6:170871043G>A	uc003qxt.2	+	3	451	c.219G>A	c.(217-219)CAG>CAA	p.Q73Q	TBP_uc003qxu.2_Silent_p.Q73Q|TBP_uc011ehf.1_Silent_p.Q53Q|TBP_uc011ehg.1_Silent_p.Q73Q	NM_003194	NP_003185	P20226	TBP_HUMAN	TATA box binding protein	73	Poly-Gln.				cell death|interspecies interaction between organisms|transcription elongation from RNA polymerase II promoter|transcription from RNA polymerase III promoter|viral reproduction	transcription factor TFIIA complex|transcription factor TFIID complex	repressing transcription factor binding|transcription regulatory region DNA binding			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;1.07e-22)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00591)		agcagcaacagcaacagcagc	0.149000													5	13					0	0	0.029380	0	0
INTS1	26173	broad.mit.edu	37	7	1535858	1535858	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr7:1535858T>C	uc003skn.2	-	12	1746	c.1645A>G	c.(1645-1647)ATG>GTG	p.M549V	INTS1_uc003skp.1_5'Flank	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	549					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CCCAGCATCATGGACACGGCC	0.632000													27	82					0	0	0.034045	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183114	147183114	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr7:147183114T>G	uc003weu.1	+	11	2274	c.1758T>G	c.(1756-1758)AGT>AGG	p.S586R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	586	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGGATACAGTGGGGCCACCT	0.468000										HNSCC(39;0.1)			6	76					0	0	0.016723	0	0
KIAA0146	23514	broad.mit.edu	37	8	48308957	48308957	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr8:48308957G>C	uc003xqd.2	+	6	556	c.547G>C	c.(547-549)GAG>CAG	p.E183Q	KIAA0146_uc011lcz.1_Intron|KIAA0146_uc011lda.1_Intron|KIAA0146_uc011ldb.1_Missense_Mutation_p.E183Q|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.E113Q|KIAA0146_uc011ldd.1_Missense_Mutation_p.E123Q|KIAA0146_uc003xqe.2_Intron|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Intron	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	183											0		Lung NSC(58;0.175)				AGAAATTTTAGAGTATTCATC	0.313000													17	37					0	0	0.007413	0	0
FER1L6	654463	broad.mit.edu	37	8	125074167	125074167	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr8:125074167T>A	uc003yqw.2	+	25	3428	c.3222T>A	c.(3220-3222)AGT>AGA	p.S1074R	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1074	Cytoplasmic (Potential).|C2 4.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TTGGGAGGAGTACCCTTGTGG	0.542000													44	89					0	0	0.036044	0	0
Unknown	0	broad.mit.edu	37	MT	7850	7850	+	RNA	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chrM:7850G>A	uc004cou.3	+	1		c.265G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		ACATAACAGACGAGGTCAACG	0.502000													19	886					0	0	0.018920	0	0
Unknown	0	broad.mit.edu	37	MT	11379	11379	+	RNA	SNP	T	C	C			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chrM:11379T>C	uc004cov.3	+	1		c.802T>C			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		TATAGTAAAGATACCTCTTTA	0.433000													9	888					0	0	0.003080	0	0
DDX53	168400	broad.mit.edu	37	X	23019108	23019108	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chrX:23019108G>A	uc004daj.2	+	1	1022	c.934G>A	c.(934-936)GTG>ATG	p.V312M		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	312	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						GGCTCTTCACGTGGAAGCTGA	0.408000													31	21					0	0	0.037714	0	0
ZNF559	84527	broad.mit.edu	37	19	9452840	9452840	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr19:9452840delA	uc002mlg.2	+	7	1360	c.713delA	c.(712-714)GAAfs	p.E238fs	ZNF559_uc002mlf.2_Frame_Shift_Del_p.E7fs|ZNF559_uc010dwl.1_Frame_Shift_Del_p.E7fs|ZNF559_uc010xkn.1_Frame_Shift_Del_p.E230fs|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Frame_Shift_Del_p.E302fs|ZNF559_uc010dwk.1_Frame_Shift_Del_p.E7fs|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAAGATGGAGAAAAATTCTAT	0.363													38	72	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551272	42551272	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr21:42551272delC	uc002yyz.2	-	1	5895	c.284delG	c.(283-285)GGAfs	p.G95fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	95											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.030													8	7	---	---	---	---					
BAT5	7920	broad.mit.edu	37	6	31655645	31655646	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	g.chr6:31655645_31655646insG	uc003nvy.1	-	17	1432_1433	c.1402_1403insC	c.(1402-1404)CGAfs	p.R468fs	BAT5_uc003nvx.1_Frame_Shift_Ins_p.R249fs|BAT5_uc011dny.1_Frame_Shift_Ins_p.R435fs|BAT5_uc003nvz.1_Frame_Shift_Ins_p.R249fs|BAT5_uc011dnz.1_Frame_Shift_Ins_p.R249fs	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	468						integral to membrane	hydrolase activity|protein binding				0						CCTCACCACTCGAAGACCCTCC	0.594													21	96	---	---	---	---					
