Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17086856	17086856	+	Silent	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr1:17086856G>A	uc010ock.1	-	4	468	c.468C>T	c.(466-468)TGC>TGT	p.C156C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TACCCACCCGGCAGGATTTGA	0.632000													6	35					0	0	0.038147	0	0
KHDRBS1	10657	broad.mit.edu	37	1	32508212	32508212	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr1:32508212A>G	uc001bub.2	+	9	1425	c.1319A>G	c.(1318-1320)TAT>TGT	p.Y440C	KHDRBS1_uc001bua.1_Missense_Mutation_p.Y401C|KHDRBS1_uc001buc.1_RNA	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal	440					cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GAGCACCCATATGGACGTTAT	0.483000													12	41					0	0	0.093190	0	0
TTLL7	79739	broad.mit.edu	37	1	84348653	84348653	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr1:84348653T>C	uc001djc.2	-	20	2932	c.2536A>G	c.(2536-2538)AAT>GAT	p.N846D	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	846					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		TACCTGGAATTACCCCAGTCA	0.398000													17	119					0	0	0.049695	0	0
CFH	3075	broad.mit.edu	37	1	196706023	196706023	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr1:196706023A>T	uc001gtj.3	+	16	2723	c.2483A>T	c.(2482-2484)AAT>ATT	p.N828I		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	828	Sushi 14.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ACCACACTGAATTATCGGGAT	0.328000													5	45					0	0	0.021553	0	0
PPP1R15B	84919	broad.mit.edu	37	1	204379183	204379183	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr1:204379183C>A	uc001hav.3	-	1	1762	c.1357G>T	c.(1357-1359)GAG>TAG	p.E453*		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	453					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			CCATCATCCTCAGCTTCCTCA	0.448000													49	172					6.14515e-18	7.73099e-18	0.048971	1	0
CAMK1D	57118	broad.mit.edu	37	10	12811756	12811756	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr10:12811756G>A	uc001ilo.2	+	5	758	c.523G>A	c.(523-525)GGA>AGA	p.G175R	CAMK1D_uc001iln.2_Missense_Mutation_p.G175R	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	175	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		GGAGGGCAAAGGAGATGTGAT	0.458000													15	65					0	0	0.028581	0	0
OR5T2	219464	broad.mit.edu	37	11	56000140	56000140	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr11:56000140G>T	uc010rjc.1	-	1	522	c.522C>A	c.(520-522)AGC>AGA	p.S174R		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	174	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TGGGTGACATGCTCACTGAAT	0.433000													45	148					1.15505e-17	1.40771e-17	0.111260	1	0
SLCO1B3	28234	broad.mit.edu	37	12	21030825	21030825	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr12:21030825G>C	uc001rek.2	+	9	1216	c.1090G>C	c.(1090-1092)GAG>CAG	p.E364Q	SLCO1B3_uc001rel.2_Missense_Mutation_p.E364Q|SLCO1B3_uc010sil.1_Missense_Mutation_p.E364Q|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E189Q	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	364	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TAAATATATGGAGCAACAGTA	0.353000													4	141					0	0	0.009096	0	0
TPCN1	53373	broad.mit.edu	37	12	113704162	113704162	+	Splice_Site	SNP	G	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr12:113704162G>T	uc001tuw.2	+	4	711	c.414_splice	c.e4+1	p.Y138_splice	TPCN1_uc001tux.2_Splice_Site_p.Y210_splice|TPCN1_uc010syt.1_Splice_Site_p.Y70_splice	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2							endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						TGGCATCTATGTGAGCGCACA	0.622000													63	275					1.25706e-45	1.63418e-45	0.048971	1	0
ANKRD11	29123	broad.mit.edu	37	16	89345492	89345492	+	Silent	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr16:89345492G>A	uc002fmx.1	-	9	7919	c.7458C>T	c.(7456-7458)CTC>CTT	p.L2486L	ANKRD11_uc002fmy.1_Silent_p.L2486L|ANKRD11_uc002fnc.1_Silent_p.L2486L|ANKRD11_uc002fna.1_Silent_p.L151L|ANKRD11_uc002fnb.1_Silent_p.L2443L	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2486						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CGGGGATGTGGAGCTTGCTGA	0.657000													6	29					0	0	0.058154	0	0
SLFN11	91607	broad.mit.edu	37	17	33679780	33679780	+	Silent	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr17:33679780G>A	uc010ctp.2	-	7	2743	c.2301C>T	c.(2299-2301)GCC>GCT	p.A767A	SLFN11_uc010ctq.2_Silent_p.A767A|SLFN11_uc002hjh.3_Silent_p.A767A|SLFN11_uc002hjg.3_Silent_p.A767A|SLFN11_uc010ctr.2_Silent_p.A767A	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	767						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGGACCATTCGGCTTCAGGAA	0.443000													18	63					0	0	0.038395	0	0
PTPRM	5797	broad.mit.edu	37	18	8379245	8379245	+	Silent	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr18:8379245G>A	uc002knn.3	+	26	4157	c.3654G>A	c.(3652-3654)CGG>CGA	p.R1218R	PTPRM_uc010dkv.2_Silent_p.R1231R|PTPRM_uc010wzl.1_Silent_p.R1005R	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1218	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AGAAAAACCGGTGCATGGACA	0.562000													22	77					0	0	0.055883	0	0
PRTN3	5657	broad.mit.edu	37	19	841048	841048	+	Silent	SNP	C	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr19:841048C>T	uc002lqa.1	+	1	64	c.40C>T	c.(40-42)CTG>TTG	p.L14L		NM_002777	NP_002768	P24158	PRTN3_HUMAN	myeloblastin	14					collagen catabolic process|positive regulation of cell proliferation|proteolysis		protein binding|serine-type endopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGTCCGTGCTGCTGGCCTT	0.657000													8	29					0	0	0.069234	0	0
HNRNPL	3191	broad.mit.edu	37	19	39336576	39336576	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr19:39336576G>C	uc010xul.1	-	3	552	c.541C>G	c.(541-543)CGC>GGC	p.R181G	HNRNPL_uc010xum.1_Missense_Mutation_p.R48G|HNRNPL_uc010xun.1_5'Flank	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	181					nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			TCCCCAGGGCGGGAGATCTTC	0.542000													24	148					0	0	0.034045	0	0
TRPM4	54795	broad.mit.edu	37	19	49703680	49703680	+	Silent	SNP	G	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr19:49703680G>T	uc002pmw.2	+	18	2841	c.2769G>T	c.(2767-2769)GTG>GTT	p.V923V	TRPM4_uc010emu.2_Silent_p.V778V|TRPM4_uc010yak.1_Silent_p.V387V|TRPM4_uc002pmx.2_Silent_p.V749V|TRPM4_uc010emv.2_Silent_p.V808V|TRPM4_uc010yal.1_Silent_p.V569V|TRPM4_uc002pmy.2_Silent_p.V265V	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	923	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		TCGTCATCGTGAGCAAGATGG	0.612000													10	26					0.000442599	0.000479483	0.058154	1	0
LILRA6	79168	broad.mit.edu	37	19	54745734	54745734	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr19:54745734G>T	uc002qeu.1	-	4	500	c.376C>A	c.(376-378)CTC>ATC	p.L126I	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Missense_Mutation_p.L126I|LILRA6_uc002qek.1_Missense_Mutation_p.L126I|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.L126I|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.L126I|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Missense_Mutation_p.L126I|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.L126I|LILRA6_uc010yep.1_Missense_Mutation_p.L126I|LILRA6_uc010yeq.1_Missense_Mutation_p.L126I|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_5'UTR	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	126	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGGGCTGAGAGGGTGGGTTTG	0.567000													17	25					1.15919e-05	1.32965e-05	0.049695	1	0
OTOF	9381	broad.mit.edu	37	2	26717888	26717888	+	Silent	SNP	A	G	G			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr2:26717888A>G	uc002rhk.2	-	9	946	c.819T>C	c.(817-819)CCT>CCC	p.P273P		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	273	Cytoplasmic (Potential).|C2 1.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGCACACCACAGGGTCCATGT	0.587000													3	71					0	0	0.004672	0	0
DIS3L2	129563	broad.mit.edu	37	2	233075106	233075106	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr2:233075106C>G	uc010fxz.2	+	10	1471	c.1195C>G	c.(1195-1197)CTC>GTC	p.L399V	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	399							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		CTGCAAGCCACTCGCTGACGG	0.512000													7	39					0	0	0.038147	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978127	45978127	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr21:45978127C>T	uc002zfj.1	-	1	517	c.472G>A	c.(472-474)GTG>ATG	p.V158M	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	158	18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						AGGAGGGACACGGAGGAGGAG	0.637000													26	91					0	0	0.034045	0	0
GTSE1	51512	broad.mit.edu	37	22	46724721	46724721	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr22:46724721A>C	uc011aqy.1	+	10	2073	c.1861A>C	c.(1861-1863)AAA>CAA	p.K621Q	GTSE1_uc011aqz.1_Missense_Mutation_p.K468Q|GTSE1_uc003bhm.1_Missense_Mutation_p.K246Q|GTSE1_uc003bhn.2_5'Flank|uc011ara.1_5'Flank|uc003bho.3_5'Flank	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	602					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		TACTTTCTCCAAAAGTACTGC	0.567000													38	166					0	0	0.080422	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755505	49755505	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr3:49755505T>C	uc003cxj.2	-	1	1734	c.1394A>G	c.(1393-1395)AAT>AGT	p.N465S	RNF123_uc003cxh.2_Intron|RNF123_uc003cxi.2_Intron	NM_198722	NP_942015	Q86WK7	AMGO3_HUMAN	adhesion molecule with Ig-like domain 3	465	Cytoplasmic (Potential).				heterophilic cell-cell adhesion	integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;4.47e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CACGCGGCCATTGAGGCCCCT	0.632000													14	87					0	0	0.038395	0	0
ABCC10	89845	broad.mit.edu	37	6	43412937	43412937	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr6:43412937C>T	uc003ouy.1	+	14	3130	c.2915C>T	c.(2914-2916)GCG>GTG	p.A972V	ABCC10_uc003ouz.1_Missense_Mutation_p.A944V|ABCC10_uc010jyo.1_Missense_Mutation_p.A78V	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	972	ABC transmembrane type-1 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			ACCGTGTATGCGACCATTGCT	0.607000													4	75					0	0	0.009096	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121681010	121681010	+	Silent	SNP	G	A	A			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr7:121681010G>A	uc003vjy.2	+	21	6173	c.5778G>A	c.(5776-5778)GTG>GTA	p.V1926V	PTPRZ1_uc003vjz.2_Silent_p.V1059V|PTPRZ1_uc011knt.1_Silent_p.V516V	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1926	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GCCATGCAGTGGGGCCTGTTG	0.498000													13	66					0	0	0.024245	0	0
MTBP	27085	broad.mit.edu	37	8	121518998	121518998	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr8:121518998C>T	uc003ypc.1	+	16	1825	c.1780C>T	c.(1780-1782)CCT>TCT	p.P594S		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	594	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			CAAAGAGGGTCCTCGGGACTC	0.398000													6	68					0	0	0.021553	0	0
ANKRD19	138649	broad.mit.edu	37	9	95599082	95599082	+	RNA	SNP	C	T	T	rs10156497	by1000genomes	TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr9:95599082C>T	uc004ass.2	+	9		c.1166C>T			ANKRD19_uc004asr.3_RNA	NR_026868				Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						CAGGGATTCACGGGCGCACAC	0.353000													3	30					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	MT	9487	9487	+	RNA	SNP	T	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chrM:9487T>C	uc011mfi.1	+	1		c.825T>C			uc004cov.3_5'Flank|uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens mRNA for OK/SW-CL.16, complete cds.																		AGTTTTTTTCTTCGCAGGATT	0.507000													6	4					0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	MT	14182	14182	+	RNA	SNP	T	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chrM:14182T>C	uc004cox.3	+	1		c.1846T>C			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ATTACAATATATACACCAACA	0.418000													4	7					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	MT	14466	14466	+	RNA	SNP	T	C	C			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chrM:14466T>C	uc004cox.3	+	1		c.2130T>C			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CATCGCTGTAGTATATCCAAA	0.438000													4	15					0	0	0.009096	0	0
C11orf9	745	broad.mit.edu	37	11	61544792	61544798	+	Frame_Shift_Del	DEL	GGTGCCC	-	-			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr11:61544792_61544798delGGTGCCC	uc001nsc.1	+	12	1743_1749	c.1647_1653delGGTGCCC	c.(1645-1653)CAGGTGCCCfs	p.Q549fs	C11orf9_uc001nse.1_Frame_Shift_Del_p.Q540fs|C11orf9_uc010rll.1_5'Flank	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	549_551					central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						AGCGGGCACAGGTGCCCGACACCGTCT	0.647													7	57	---	---	---	---					
PLAC4	191585	broad.mit.edu	37	21	42551272	42551272	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr21:42551272delC	uc002yyz.2	-	1	5895	c.284delG	c.(283-285)GGAfs	p.G95fs	BACE2_uc002yyw.2_Intron|BACE2_uc002yyx.2_Intron|BACE2_uc002yyy.2_Intron	NM_182832	NP_878252	Q8WY50	PLAC4_HUMAN	placenta-specific 4	95											0		Prostate(19;2.29e-06)				gtgagggtatccagggtgagt	0.030													4	4	---	---	---	---					
CDH10	1008	broad.mit.edu	37	5	24492973	24492973	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	g.chr5:24492973delA	uc003jgr.1	-	10	1909	c.1577delT	c.(1576-1578)TTCfs	p.F526fs	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	526	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCTAAACTGAAAAAAAATTT	0.313										HNSCC(23;0.051)			7	349	---	---	---	---					
