Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EPHA2	1969	broad.mit.edu	37	1	16456043	16456043	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:16456043A>C	uc001aya.1	-	16	2848	c.2711T>G	c.(2710-2712)GTG>GGG	p.V904G		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	904	SAM.|Mediates interaction with ARHGEF16 and ELMO2.|Cytoplasmic (Potential).|Negatively regulates interaction with ARHGEF16.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GCGGAAGGGCACCCCCTCCGA	0.458000													8	39					0	0	0.038395	0	0
TRIM63	84676	broad.mit.edu	37	1	26386776	26386776	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:26386776T>A	uc001bli.1	-	4	714	c.578A>T	c.(577-579)GAT>GTT	p.D193V		NM_032588	NP_115977	Q969Q1	TRI63_HUMAN	muscle specific ring finger protein 1	193	Interaction with TTN.					cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		TCGACGGGAATCCTCCAGCTG	0.572000													19	82					0	0	0.016522	0	0
SERINC2	347735	broad.mit.edu	37	1	31897695	31897695	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:31897695G>A	uc010ogh.1	+	3	580	c.379G>A	c.(379-381)GAC>AAC	p.D127N	SERINC2_uc010ogg.1_Missense_Mutation_p.D124N|SERINC2_uc009vtw.1_Missense_Mutation_p.D123N|SERINC2_uc001bst.2_Missense_Mutation_p.D123N|SERINC2_uc001bsu.2_Missense_Mutation_p.D68N|SERINC2_uc001bsv.2_Missense_Mutation_p.D68N	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	123						integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		CAGCAGCCGGGACCCCCGGGC	0.652000													5	24					0	0	0.021553	0	0
KIF2C	11004	broad.mit.edu	37	1	45206651	45206651	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:45206651C>A	uc001cmg.3	+	2	252	c.137C>A	c.(136-138)GCA>GAA	p.A46E	KIF2C_uc010olb.1_Missense_Mutation_p.A46E	NM_006845	NP_006836	Q99661	KIF2C_HUMAN	kinesin family member 2C	46	Globular (Potential).				blood coagulation|cell division|cell proliferation|chromosome segregation|establishment or maintenance of microtubule cytoskeleton polarity|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|kinesin complex|microtubule|nucleus	ATP binding|centromeric DNA binding|microtubule motor activity|microtubule plus-end binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTGGAATGGGCAGAAGGAGGT	0.413000													6	47					0.00307968	0.00321716	0.038147	1	0
ANKRD35	148741	broad.mit.edu	37	1	145561665	145561665	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:145561665C>T	uc001eob.1	+	10	1461	c.1353C>T	c.(1351-1353)ACC>ACT	p.T451T	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.T294T	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	451										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GGGCACAGACCTTTGGCCCTG	0.587000													17	69					0	0	0.038395	0	0
HRNR	388697	broad.mit.edu	37	1	152191362	152191362	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:152191362G>A	uc001ezt.1	-	3	2819	c.2743C>T	c.(2743-2745)CGG>TGG	p.R915W		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	915	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGAAGACCGACCGGAGCCA	0.627000													45	177					0	0	0.014410	0	0
FLAD1	80308	broad.mit.edu	37	1	154961016	154961016	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:154961016G>A	uc001fgf.1	+	2	1162	c.808G>A	c.(808-810)GGA>AGA	p.G270R	FLAD1_uc001fgc.2_Missense_Mutation_p.G171R|FLAD1_uc001fgd.1_Missense_Mutation_p.G270R|FLAD1_uc001fge.1_Missense_Mutation_p.G173R|FLAD1_uc001fgg.1_Missense_Mutation_p.G173R|FLAD1_uc001fgh.1_Missense_Mutation_p.G3R	NM_025207	NP_079483	Q8NFF5	FAD1_HUMAN	flavin adenine dinucleotide synthetase isoform	270					FAD biosynthetic process|Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|FMN adenylyltransferase activity			ovary(2)|skin(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GGGGATGAAGGGACTATTCCA	0.572000													9	53					0	0	0.004482	0	0
AKR1C3	8644	broad.mit.edu	37	10	5139633	5139633	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:5139633C>G	uc001ihr.2	+	3	443	c.260C>G	c.(259-261)TCC>TGC	p.S87C	AKR1C3_uc010qap.1_Missense_Mutation_p.S64C|AKR1C3_uc010qaq.1_Missense_Mutation_p.S87C|AKR1C3_uc001ihu.2_Missense_Mutation_p.S87C	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	87					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	CAGCTTTGGTCCACTTTTCAT	0.393000													23	85					0	0	0.018920	0	0
IL15RA	3601	broad.mit.edu	37	10	6008174	6008174	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:6008174T>C	uc001iiv.2	-	2	299	c.217A>G	c.(217-219)ACG>GCG	p.T73A	IL15RA_uc010qau.1_Missense_Mutation_p.T73A|IL15RA_uc001iiw.2_Missense_Mutation_p.T37A|IL15RA_uc001iix.2_Missense_Mutation_p.T37A|IL15RA_uc001iiy.2_Intron	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	73	Sushi.|Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						ACGCACTCCGTCAGGCTGGAC	0.557000													5	30					0	0	0.014758	0	0
VDAC2	7417	broad.mit.edu	37	10	76980587	76980587	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:76980587C>T	uc001jwz.2	+	7	602	c.443C>T	c.(442-444)GCA>GTA	p.A148V	VDAC2_uc010qld.1_Missense_Mutation_p.A109V|VDAC2_uc001jxa.2_Missense_Mutation_p.A163V|VDAC2_uc010qle.1_Missense_Mutation_p.A109V	NM_003375	NP_003366	P45880	VDAC2_HUMAN	voltage-dependent anion channel 2	148	Beta stranded; (By similarity).					mitochondrial nucleoid|mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.0642)|all_epithelial(25;0.00604)|Prostate(51;0.0112)|Ovarian(15;0.183)				Dihydroxyaluminium(DB01375)	GCTGGACCTGCAATCCATGGT	0.418000													14	66					0	0	0.043863	0	0
BTAF1	9044	broad.mit.edu	37	10	93773747	93773747	+	Missense_Mutation	SNP	A	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:93773747A>T	uc001khr.2	+	32	4643	c.4545A>T	c.(4543-4545)AAA>AAT	p.K1515N		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1515					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				TTCCACCTAAAATTATTCAAG	0.368000													20	133					0	0	0.008871	0	0
MMS19	64210	broad.mit.edu	37	10	99222420	99222420	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:99222420C>T	uc001kns.3	-	20	2157	c.1932G>A	c.(1930-1932)CTG>CTA	p.L644L	MMS19_uc001knq.2_5'Flank|MMS19_uc009xvs.2_Silent_p.L229L|MMS19_uc009xvt.2_Silent_p.L388L|MMS19_uc001knr.2_Silent_p.L485L|MMS19_uc010qox.1_Silent_p.L622L|MMS19_uc001knt.2_Silent_p.L644L|MMS19_uc001knu.1_RNA	NM_022362	NP_071757	Q96T76	MMS19_HUMAN	MMS19 nucleotide excision repair homolog	644					chromosome segregation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|response to hormone stimulus|transcription, DNA-dependent|two-component signal transduction system (phosphorelay)	cytoplasm|holo TFIIH complex|MMXD complex	estrogen receptor binding|protein binding, bridging|receptor signaling complex scaffold activity|transcription coactivator activity				0		Colorectal(252;0.0846)		Epithelial(162;3.33e-10)|all cancers(201;2.74e-08)		GTACTTTTCTCAGAACTGAGG	0.468000								Direct_reversal_of_damage|NER					4	28					0	0	0.009096	0	0
PSD	5662	broad.mit.edu	37	10	104176443	104176443	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:104176443G>C	uc001kvg.1	-	2	880	c.353C>G	c.(352-354)CCT>CGT	p.P118R	PSD_uc001kvh.1_Intron|PSD_uc009xxd.1_Missense_Mutation_p.P118R|PSD_uc001kvi.1_Missense_Mutation_p.P118R|FBXL15_uc001kvj.1_5'Flank	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	118	Pro-rich.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CCCTGGAGCAGGTAGCCCATT	0.657000													15	59					0	0	0.028581	0	0
ADAM12	8038	broad.mit.edu	37	10	127782637	127782637	+	Silent	SNP	C	G	G	rs148749883	byFrequency	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:127782637C>G	uc001ljk.2	-	11	1484	c.1071G>C	c.(1069-1071)GGG>GGC	p.G357G	ADAM12_uc010qul.1_Silent_p.G308G|ADAM12_uc001ljm.2_Silent_p.G357G|ADAM12_uc001ljn.2_Silent_p.G354G|ADAM12_uc001ljl.3_Silent_p.G354G	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	357	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		CATGATTCATCCCGAAATTGT	0.507000													14	67					0	0	0.016723	0	0
BRSK2	9024	broad.mit.edu	37	11	1459605	1459605	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr11:1459605G>A	uc001lti.2	+	3	642	c.256G>A	c.(256-258)GAA>AAA	p.E86K	BRSK2_uc009ycv.1_Missense_Mutation_p.E86K|BRSK2_uc001lth.1_Missense_Mutation_p.E86K|BRSK2_uc001ltj.2_Missense_Mutation_p.E86K|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Missense_Mutation_p.E86K|BRSK2_uc001ltm.2_Missense_Mutation_p.E132K|BRSK2_uc001ltn.2_RNA	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	86	Protein kinase.				establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		CGACGTTTATGAAAACAAAAA	0.567000													14	92					0	0	0.016723	0	0
FBXO3	26273	broad.mit.edu	37	11	33770334	33770334	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr11:33770334G>T	uc001muz.2	-	9	1065	c.1037C>A	c.(1036-1038)CCT>CAT	p.P346H	FBXO3_uc010rej.1_Missense_Mutation_p.P33H|FBXO3_uc001muy.2_Missense_Mutation_p.P233H|FBXO3_uc009ykb.2_RNA|FBXO3_uc001mva.1_Missense_Mutation_p.P346H|FBXO3_uc001mvb.1_Missense_Mutation_p.P341H|FBXO3_uc010rek.1_RNA	NM_012175	NP_036307	Q9UK99	FBX3_HUMAN	F-box only protein 3 isoform 1	346	ApaG.				proteolysis	nucleus	ubiquitin-protein ligase activity			pancreas(1)	1		Lung NSC(402;0.0804)		BRCA - Breast invasive adenocarcinoma(625;0.00315)|Lung(977;0.00488)|LUSC - Lung squamous cell carcinoma(625;0.008)		AACTACTCCAGGTCCTTGAAC	0.368000													15	54					2.62699e-14	2.98405e-14	0.024245	1	0
ACY3	91703	broad.mit.edu	37	11	67412339	67412339	+	Silent	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr11:67412339A>G	uc001omq.2	-	7	807	c.636T>C	c.(634-636)GGT>GGC	p.G212G		NM_080658	NP_542389	Q96HD9	ACY3_HUMAN	aspartoacylase 3	212					interspecies interaction between organisms	apical plasma membrane|cytoplasm	hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	GAAAGGCCGTACCTGTGTGGG	0.657000													3	20					0	0	0.004672	0	0
USP5	8078	broad.mit.edu	37	12	6968684	6968684	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr12:6968684C>T	uc001qri.3	+	9	1168	c.1109C>T	c.(1108-1110)ACC>ATC	p.T370I	USP5_uc001qrh.3_Missense_Mutation_p.T370I	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	370					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						ACGGACCCTACCCAGGATTTC	0.562000													21	73					0	0	0.021523	0	0
ATF7IP	55729	broad.mit.edu	37	12	14613823	14613823	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr12:14613823C>T	uc001rbw.2	+	9	2711	c.2553C>T	c.(2551-2553)CCC>CCT	p.P851P	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Silent_p.P851P|ATF7IP_uc001rbv.1_Silent_p.P850P|ATF7IP_uc001rbx.2_Silent_p.P850P|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Silent_p.P851P|ATF7IP_uc001rca.2_Silent_p.P851P	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	851					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						CTTCTGTGCCCAGTCCTAGTA	0.488000													23	134					0	0	0.018920	0	0
EIF4B	1975	broad.mit.edu	37	12	53431279	53431279	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr12:53431279C>T	uc001sbh.3	+	11	1599	c.1393C>T	c.(1393-1395)CCC>TCC	p.P465S	EIF4B_uc010snu.1_Missense_Mutation_p.P470S|EIF4B_uc010snv.1_Missense_Mutation_p.P426S|EIF4B_uc001sbi.2_Missense_Mutation_p.P217S	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	465					insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						TTCTAAACCTCCCAAACCTGA	0.493000													5	27					0	0	0.029380	0	0
SYNE2	23224	broad.mit.edu	37	14	64633998	64633998	+	Silent	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr14:64633998G>A	uc001xgm.2	+	91	16883	c.16653G>A	c.(16651-16653)TTG>TTA	p.L5551L	SYNE2_uc001xgl.2_Silent_p.L5551L|SYNE2_uc010apy.2_Silent_p.L1936L|SYNE2_uc001xgn.2_Silent_p.L513L|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5551	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTGAACATTTGAATGAAGTGA	0.438000													5	47					0	0	0.014758	0	0
CLMN	79789	broad.mit.edu	37	14	95670344	95670344	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr14:95670344C>T	uc001yef.2	-	9	1458	c.1342G>A	c.(1342-1344)GGG>AGG	p.G448R		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	448						integral to membrane	actin binding				0				Epithelial(152;0.193)		CTTGGGCTCCCTTCAAAGCAA	0.483000													20	74					0	0	0.010504	0	0
SPTBN5	51332	broad.mit.edu	37	15	42149779	42149779	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr15:42149779C>G	uc001zos.2	-	50	8584	c.8251G>C	c.(8251-8253)GCC>CCC	p.A2751P		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2786					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		ACCTCACAGGCCTTCTGGAGC	0.652000													5	12					0	0	0.038147	0	0
SALL1	6299	broad.mit.edu	37	16	51172851	51172851	+	Silent	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr16:51172851A>G	uc010vgs.1	-	2	3313	c.3282T>C	c.(3280-3282)CAT>CAC	p.H1094H	SALL1_uc010vgr.1_Silent_p.H997H|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1094					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GAGGAGAAACATGCACGAAGC	0.572000													15	86					0	0	0.033300	0	0
SLC38A7	55238	broad.mit.edu	37	16	58713827	58713827	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr16:58713827C>T	uc002eod.1	-	3	597	c.204G>A	c.(202-204)GGG>GGA	p.G68G	SLC38A7_uc002eob.1_RNA|SLC38A7_uc002eoc.1_Silent_p.G68G|SLC38A7_uc010vil.1_Intron|SLC38A7_uc002eoe.1_Silent_p.G68G	NM_018231	NP_060701	Q9NVC3	S38A7_HUMAN	solute carrier family 38, member 7	68	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						AGTTGAGTAACCCTGCACCCA	0.632000													8	43					0	0	0.038147	0	0
FAM65A	79567	broad.mit.edu	37	16	67577079	67577079	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr16:67577079T>A	uc010vjp.1	+	13	2546	c.2450T>A	c.(2449-2451)CTA>CAA	p.L817Q	FAM65A_uc010cei.1_Missense_Mutation_p.L639Q|FAM65A_uc002eth.2_Missense_Mutation_p.L797Q|FAM65A_uc010cej.2_Missense_Mutation_p.L800Q|FAM65A_uc002eti.1_Missense_Mutation_p.L760Q|FAM65A_uc010vjq.1_Missense_Mutation_p.L811Q|FAM65A_uc002etj.1_Missense_Mutation_p.L796Q|FAM65A_uc002etk.2_Missense_Mutation_p.L796Q	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	801						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		CTGGGGGCCCTAATGGCTGCC	0.642000													13	25					0	0	0.016723	0	0
ZZEF1	23140	broad.mit.edu	37	17	3919676	3919676	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:3919676C>A	uc002fxe.2	-	49	8150	c.8086G>T	c.(8086-8088)GGA>TGA	p.G2696*	ZZEF1_uc002fxg.1_Nonsense_Mutation_p.G17*	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2696							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						ACCTCCATTCCTGGCTCCTCC	0.597000													32	102					6.70999e-13	7.47684e-13	0.019004	1	0
KRT37	8688	broad.mit.edu	37	17	39577782	39577782	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:39577782C>G	uc002hwp.1	-	6	1125	c.1078G>C	c.(1078-1080)GCC>CCC	p.A360P	uc002hwo.1_Intron	NM_003770	NP_003761	O76014	KRT37_HUMAN	keratin 37	360	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(1)	1		Breast(137;0.000496)				TGCATCTGGGCCAGCTCTGTG	0.567000													9	70					0	0	0.010729	0	0
MED13	9969	broad.mit.edu	37	17	60023946	60023946	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:60023946C>G	uc002izo.2	-	30	6485	c.6408G>C	c.(6406-6408)CAG>CAC	p.Q2136H		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	2136					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						GTGCATTGTACTGTTCCAAAA	0.378000													21	44					0	0	0.014323	0	0
RNF157	114804	broad.mit.edu	37	17	74163165	74163165	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:74163165C>A	uc002jqz.2	-	5	555	c.486G>T	c.(484-486)CAG>CAT	p.Q162H	RNF157_uc002jra.2_Missense_Mutation_p.Q162H	NM_052916	NP_443148	Q96PX1	RN157_HUMAN	ring finger protein 157	162							zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(166;0.187)			CTCGCTTGTACTGCACAGTCT	0.567000													21	159					8.24728e-16	9.46012e-16	0.024334	1	0
BIRC5	332	broad.mit.edu	37	17	76212806	76212806	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:76212806G>A	uc002jvg.2	+	3	404	c.283G>A	c.(283-285)GAA>AAA	p.E95K	BIRC5_uc002jve.1_Intron|BIRC5_uc002jvd.1_Missense_Mutation_p.E118K|BIRC5_uc010dhk.1_RNA|BIRC5_uc010dhl.1_Missense_Mutation_p.E143K|BIRC5_uc002jvf.2_Missense_Mutation_p.E118K|BIRC5_uc002jvh.2_Intron|BIRC5_uc002jvi.2_RNA|EPR1_uc002jvj.1_RNA	NM_001168	NP_001159	O15392	BIRC5_HUMAN	baculoviral IAP repeat-containing protein 5	95					anti-apoptosis|apoptosis|cell division|chromosome segregation|cytokinesis|establishment of chromosome localization|G2/M transition of mitotic cell cycle|mitosis|mitotic prometaphase|positive regulation of exit from mitosis|positive regulation of mitotic cell cycle|protein complex localization|spindle checkpoint	centriole|chromosome passenger complex|chromosome, centromeric region|cytoplasm|cytoplasmic microtubule|cytosol|interphase microtubule organizing center|midbody|midbody|nuclear chromosome|spindle|spindle microtubule	caspase inhibitor activity|chaperone binding|cobalt ion binding|cofactor binding|cysteine-type endopeptidase inhibitor activity|metal ion binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|Ran GTPase binding|zinc ion binding			kidney(1)	1			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.153)			GCAGTTTGAAGAATTAACCCT	0.398000													27	82					0	0	0.027356	0	0
RAB12	201475	broad.mit.edu	37	18	8609872	8609872	+	Silent	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:8609872C>A	uc002knp.2	+	1	430	c.147C>A	c.(145-147)GGC>GGA	p.G49G	RAB12_uc002kno.1_Silent_p.G145G	NM_001025300	NP_001020471	Q6IQ22	RAB12_HUMAN	RAB12, member RAS oncogene family	49	GTP.				protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0						TCATTATCGGCTCCCGCGGCG	0.652000													6	24					0.00116845	0.0012428	0.021553	1	0
APCDD1	147495	broad.mit.edu	37	18	10471914	10471914	+	Silent	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:10471914G>A	uc002kom.3	+	3	984	c.630G>A	c.(628-630)CAG>CAA	p.Q210Q		NM_153000	NP_694545	Q8J025	APCD1_HUMAN	adenomatosis polyposis coli down-regulated 1	210	Extracellular (Potential).				hair follicle development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to plasma membrane	Wnt-protein binding				0				READ - Rectum adenocarcinoma(15;0.08)		ATGAACTTCAGCTCATCCGGG	0.582000													32	153					0	0	0.013726	0	0
CEP192	55125	broad.mit.edu	37	18	13071144	13071144	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:13071144G>T	uc010xac.1	+	28	5361	c.5281G>T	c.(5281-5283)GAT>TAT	p.D1761Y	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.D1286Y|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.D183Y|CEP192_uc002krw.2_Intron|CEP192_uc002krx.2_5'Flank	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1761										ovary(4)|pancreas(1)	5						ACCTTGCTTAGATATTCCATC	0.398000													12	41					5.50884e-06	6.02368e-06	0.013537	1	0
ZNF519	162655	broad.mit.edu	37	18	14105675	14105675	+	Silent	SNP	T	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:14105675T>C	uc002kst.1	-	3	1017	c.864A>G	c.(862-864)GGA>GGG	p.G288G	ZNF519_uc002ksq.1_Intron|ZNF519_uc002ksr.1_Intron|ZNF519_uc010dlm.1_Intron	NM_145287	NP_660330	Q8TB69	ZN519_HUMAN	zinc finger protein 519	288					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGGTTTCTCTCCAGTATGAA	0.363000													17	53					0	0	0.033300	0	0
LAMA3	3909	broad.mit.edu	37	18	21451430	21451430	+	Silent	SNP	G	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:21451430G>T	uc002kuq.2	+	38	4889	c.4803G>T	c.(4801-4803)GTG>GTT	p.V1601V	LAMA3_uc002kur.2_Silent_p.V1601V|LAMA3_uc002kus.3_5'Flank|LAMA3_uc002kut.3_5'Flank	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1601	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGCCCCAGTGTCTAGGGAGG	0.552000													9	61					6.40141e-05	6.93486e-05	0.010729	1	0
ZNF521	25925	broad.mit.edu	37	18	22805629	22805629	+	Silent	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:22805629G>C	uc002kvk.2	-	4	2500	c.2253C>G	c.(2251-2253)GTC>GTG	p.V751V	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.V751V|ZNF521_uc002kvl.2_Silent_p.V531V	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	751					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					TGCACCTATAGACTTTCTTTT	0.468000			T	PAX5	ALL								15	65					0	0	0.020292	0	0
KIAA1328	57536	broad.mit.edu	37	18	34802114	34802114	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:34802114G>C	uc002kzz.2	+	10	1680	c.1658G>C	c.(1657-1659)CGG>CCG	p.R553P	KIAA1328_uc002lab.2_3'UTR|KIAA1328_uc002lac.1_Missense_Mutation_p.R412P|KIAA1328_uc010dnc.1_RNA	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	553										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		AAATCAACCCGGAAGAAGATG	0.463000													6	8					0	0	0.021553	0	0
ADNP2	22850	broad.mit.edu	37	18	77896690	77896690	+	Nonstop_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr18:77896690T>A	uc002lnw.2	+	4	3849	c.3394T>A	c.(3394-3396)TAA>AAA	p.*1132K		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	1132					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		ATATGAACCATAAAACTTGCA	0.303000													7	5					0	0	0.029380	0	0
ZNF844	284391	broad.mit.edu	37	19	12187502	12187502	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:12187502A>G	uc002mtb.2	+	4	1710	c.1567A>G	c.(1567-1569)AAA>GAA	p.K523E	ZNF844_uc010dym.1_Missense_Mutation_p.K366E	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAATGCATGAAAGGACTCAC	0.413000													3	30					0	0	0.021553	0	0
ZNF430	80264	broad.mit.edu	37	19	21240780	21240780	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:21240780C>G	uc002npj.2	+	5	1776	c.1666C>G	c.(1666-1668)CTT>GTT	p.L556V	ZNF430_uc002npk.2_Missense_Mutation_p.L555V	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	556					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GTCCTCAAACCTTATTGAACA	0.383000													9	28					0	0	0.006214	0	0
CD177	57126	broad.mit.edu	37	19	43858482	43858482	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:43858482A>G	uc002owi.2	+	3	359	c.317A>G	c.(316-318)CAG>CGG	p.Q106R	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	106					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GTGTGCCGCCAGGAGGACTTC	0.682000													14	58					0	0	0.016723	0	0
FUT2	2524	broad.mit.edu	37	19	49206557	49206557	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:49206557A>C	uc002pke.3	+	2	455	c.344A>C	c.(343-345)CAC>CCC	p.H115P	FUT2_uc010emc.2_Missense_Mutation_p.H115P	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	115	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		CCGGTGCTGCACAGCGCCACG	0.652000													6	64					0	0	0.021553	0	0
ZNF473	25888	broad.mit.edu	37	19	50550199	50550199	+	Silent	SNP	G	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:50550199G>T	uc002prn.2	+	5	2736	c.2499G>T	c.(2497-2499)CTG>CTT	p.L833L	ZNF473_uc002prm.2_Silent_p.L833L|ZNF473_uc010ybo.1_Silent_p.L821L	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	833	C2H2-type 19.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		ACCAGCACCTGAGAGTTCACA	0.517000											OREG0025632	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	52					3.41278e-10	3.76694e-10	0.033300	1	0
SIGLEC12	89858	broad.mit.edu	37	19	52004707	52004707	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:52004707T>A	uc002pwx.1	-	1	337	c.281A>T	c.(280-282)CAC>CTC	p.H94L	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	94	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCCAAGGAGGTGGAATCGGTC	0.552000													24	164					0	0	0.027356	0	0
ZNF28	7576	broad.mit.edu	37	19	53303801	53303801	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:53303801G>C	uc002qad.2	-	4	1417	c.1297C>G	c.(1297-1299)CAC>GAC	p.H433D	ZNF28_uc002qac.2_Missense_Mutation_p.H380D|ZNF28_uc010eqe.2_Missense_Mutation_p.H379D	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	433	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TCTCCAGTGTGAATTATACTA	0.373000													27	138					0	0	0.027356	0	0
ZNF761	388561	broad.mit.edu	37	19	53958007	53958007	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:53958007T>G	uc010eqp.2	+	7	704	c.246T>G	c.(244-246)AAT>AAG	p.N82K	ZNF761_uc010ydy.1_Missense_Mutation_p.N28K|ZNF761_uc002qbt.1_Missense_Mutation_p.N28K	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	82					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		GTCATCACAATGGAGATTTTT	0.398000													9	80					0	0	0.004482	0	0
FCAR	2204	broad.mit.edu	37	19	55401195	55401196	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:55401195_55401196TG>GT	uc002qhr.1	+	5	1027_1028	c.830_831TG>GT	c.(829-831)TTG>TGT	p.L277C	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.L228C|FCAR_uc010esi.1_Missense_Mutation_p.L154C|FCAR_uc002qhu.1_Missense_Mutation_p.L181C|FCAR_uc002qhv.1_Missense_Mutation_p.L255C|FCAR_uc002qhw.1_Missense_Mutation_p.L265C|FCAR_uc002qhx.1_Missense_Mutation_p.L169C|FCAR_uc002qhy.1_Missense_Mutation_p.L243C|FCAR_uc002qhz.1_3'UTR|FCAR_uc002qia.1_Missense_Mutation_p.L168C	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	277	Cytoplasmic (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CAGCCAGGATTGACCTTTGCAC	0.525000													32	166					0	0	0.004672	0	0
LOXL3	84695	broad.mit.edu	37	2	74761483	74761483	+	Silent	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:74761483G>A	uc002smp.1	-	11	1971	c.1899C>T	c.(1897-1899)CAC>CAT	p.H633H	LOXL3_uc002smo.1_Silent_p.H272H|LOXL3_uc010ffm.1_Silent_p.H577H|LOXL3_uc002smq.1_Silent_p.H488H|LOXL3_uc010ffn.1_Silent_p.H488H	NM_032603	NP_115992	P58215	LOXL3_HUMAN	lysyl oxidase-like 3 precursor	633	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein-lysine 6-oxidase activity|scavenger receptor activity				0						AACTAGCTTTGTGGCCCTCAG	0.502000													15	90					0	0	0.043863	0	0
POLR1A	25885	broad.mit.edu	37	2	86279952	86279952	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:86279952C>T	uc002sqs.2	-	16	2759	c.2380G>A	c.(2380-2382)GGC>AGC	p.G794S	POLR1A_uc010ytb.1_Missense_Mutation_p.G160S	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	794					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						AAGGTGAAGCCTCTGTAGAGC	0.652000													5	48					0	0	0.004482	0	0
TUBA3D	113457	broad.mit.edu	37	2	132236969	132236969	+	Silent	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:132236969G>A	uc002tsu.3	+	3	422	c.315G>A	c.(313-315)AGG>AGA	p.R105R		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d	105					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		ATTACGCCAGGGGCCATTACA	0.527000													37	188					0	0	0.021022	0	0
LOC150776	150776	broad.mit.edu	37	2	132266142	132266142	+	Silent	SNP	G	C	C	rs12691988	by1000genomes	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:132266142G>C	uc010fna.2	+	2	361	c.21G>C	c.(19-21)TCG>TCC	p.S7S	LOC150776_uc010zax.1_RNA|LOC150776_uc010zay.1_RNA|LOC150776_uc010zaz.1_RNA|LOC150776_uc002tsy.3_RNA					Homo sapiens cDNA FLJ61219 complete cds, highly similar to Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane, transcript variant 2, mRNA.												0						ATCACTATTCGTTGGAGATGT	0.338000													3	46					0	0	0.009096	0	0
FIGN	55137	broad.mit.edu	37	2	164466515	164466515	+	Missense_Mutation	SNP	A	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:164466515A>T	uc002uck.1	-	3	2138	c.1827T>A	c.(1825-1827)TTT>TTA	p.F609L		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	609						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						GTTGCATCAGAAATTCGGTTC	0.458000													19	70					0	0	0.010504	0	0
TTN	7273	broad.mit.edu	37	2	179650403	179650403	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:179650403T>A	uc010zfg.1	-	15	2661	c.2437A>T	c.(2437-2439)AGC>TGC	p.S813C	TTN_uc010zfh.1_Missense_Mutation_p.S767C|TTN_uc010zfi.1_Missense_Mutation_p.S767C|TTN_uc010zfj.1_Missense_Mutation_p.S767C|TTN_uc002unb.2_Missense_Mutation_p.S813C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	813							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTGAGGGCTAGCTGTGCGG	0.373000													14	61					0	0	0.020292	0	0
COL6A3	1293	broad.mit.edu	37	2	238303376	238303376	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:238303376A>G	uc002vwl.2	-	3	848	c.563T>C	c.(562-564)ATA>ACA	p.I188T	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.I188T	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	188	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TTCACTTGCTATTTCTTTTAA	0.433000													12	64					0	0	0.013537	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241516157	241516157	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr2:241516157C>T	uc002vzi.2	+	9	1616	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L	RNPEPL1_uc010fzf.2_Silent_p.L247L|RNPEPL1_uc002vzj.2_5'UTR	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	341					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		TGGACCGGCTCCTGGATGGGT	0.687000													11	64					0	0	0.008291	0	0
WFDC12	128488	broad.mit.edu	37	20	43752864	43752864	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr20:43752864C>T	uc002xnf.1	-	2	140	c.122G>A	c.(121-123)TGC>TAC	p.C41Y		NM_080869	NP_543145	Q8WWY7	WFD12_HUMAN	WAP four-disulfide core domain 12 precursor	41	WAP.				defense response to bacterium	extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGACTTGAAGCAGCGTACGTT	0.547000													5	96					0	0	0.029380	0	0
SLC2A4RG	56731	broad.mit.edu	37	20	62374341	62374341	+	Nonstop_Mutation	SNP	T	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr20:62374341T>C	uc002ygq.2	+	8	1217	c.1162T>C	c.(1162-1164)TAA>CAA	p.*388Q	SLC2A4RG_uc002ygr.2_Nonstop_Mutation_p.*283Q|SLC2A4RG_uc011abj.1_Nonstop_Mutation_p.*283Q|SLC2A4RG_uc002ygs.2_Nonstop_Mutation_p.*190Q|SLC2A4RG_uc002ygt.2_Missense_Mutation_p.L106P	NM_020062	NP_064446	Q9NR83	S2A4R_HUMAN	SLC2A4 regulator	388						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_cancers(38;1.13e-12)|all_epithelial(29;2.64e-14)|Lung NSC(23;4.79e-10)|all_lung(23;1.7e-09)					GTTCCTGGACTAAGTCCGGCT	0.652000													6	17					0	0	0.021553	0	0
SCAP	22937	broad.mit.edu	37	3	47456625	47456625	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr3:47456625C>T	uc003crh.1	-	19	3357	c.3102G>A	c.(3100-3102)TTG>TTA	p.L1034L	SCAP_uc011baz.1_Silent_p.L778L|SCAP_uc003crg.2_Silent_p.L641L|uc003cri.2_RNA	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	1034	Interaction with SREBF2 (By similarity).|Cytoplasmic (By similarity).|WD 3.				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		TGTGGGTCTCCAAGGAGAAGA	0.632000													15	43					0	0	0.028581	0	0
C3orf18	51161	broad.mit.edu	37	3	50602964	50602964	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr3:50602964G>A	uc003das.2	-	2	618	c.167C>T	c.(166-168)ACG>ATG	p.T56M	C3orf18_uc003dar.2_Missense_Mutation_p.T56M|C3orf18_uc011bdr.1_Intron|C3orf18_uc010hlo.2_Missense_Mutation_p.T56M|C3orf18_uc010hlp.2_Intron|C3orf18_uc003dat.2_Missense_Mutation_p.T56M	NM_016210	NP_057294	Q9UK00	CC018_HUMAN	hypothetical protein LOC51161	56						integral to membrane				pancreas(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.0175)|Kidney(197;0.0207)		CACGCCGGCCGTGCCACCAGC	0.607000													12	45					0	0	0.013537	0	0
BBX	56987	broad.mit.edu	37	3	107491690	107491690	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr3:107491690G>C	uc010hpr.2	+	11	1449	c.1122G>C	c.(1120-1122)GAG>GAC	p.E374D	BBX_uc003dwk.3_Missense_Mutation_p.E374D|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.E395D|BBX_uc003dwm.3_Missense_Mutation_p.E374D|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	374					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			GAAATTTTGAGGCATTGCAAA	0.323000													44	59					0	0	0.036044	0	0
EHHADH	1962	broad.mit.edu	37	3	184922367	184922367	+	Silent	SNP	G	A	A	rs149294851		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr3:184922367G>A	uc003fpf.2	-	6	774	c.747C>T	c.(745-747)ATC>ATT	p.I249I	EHHADH_uc011brs.1_Silent_p.I153I	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	249	Enoyl-CoA hydratase / isomerase.					peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	CCTCCTTCTTGATGCCCACTT	0.517000													70	155					0	0	0.014410	0	0
MFSD10	10227	broad.mit.edu	37	4	2934901	2934901	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:2934901G>C	uc003gfw.2	-	3	618	c.304C>G	c.(304-306)CTG>GTG	p.L102V	MFSD10_uc003gfv.2_5'Flank|MFSD10_uc003gfx.2_5'UTR|MFSD10_uc003gfz.2_Missense_Mutation_p.L102V|MFSD10_uc003gfy.2_RNA|MFSD10_uc003gga.2_Missense_Mutation_p.L102V|MFSD10_uc003ggb.1_Missense_Mutation_p.L102V|MFSD10_uc003ggc.2_Missense_Mutation_p.L102V|C4orf10_uc003ggd.1_5'Flank|C4orf10_uc003gge.1_5'Flank|C4orf10_uc003ggg.1_5'Flank|C4orf10_uc003ggh.2_5'Flank	NM_001120	NP_001111	Q14728	MFS10_HUMAN	major facilitator superfamily domain containing	102	Helical; (Potential).				apoptosis	integral to membrane	tetracycline transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GGCGCACACAGAAACTGCAGG	0.617000													9	35					0	0	0.006214	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6066676	6066676	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:6066676C>T	uc003giu.3	-	9	1638	c.1362G>A	c.(1360-1362)TTG>TTA	p.L454L	JAKMIP1_uc010idb.1_Silent_p.L454L|JAKMIP1_uc010idc.1_Silent_p.L269L|JAKMIP1_uc010idd.1_Silent_p.L454L|JAKMIP1_uc011bwc.1_Silent_p.L289L|JAKMIP1_uc003giv.3_Silent_p.L454L|JAKMIP1_uc010ide.2_Silent_p.L454L	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	454	Mediates interaction with TYK2 and GABBR1.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						ATGTTTCGGACAACGTTTCTG	0.488000													6	78					0	0	0.021553	0	0
BOD1L	259282	broad.mit.edu	37	4	13601157	13601157	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:13601157A>G	uc003gmz.1	-	10	7484	c.7367T>C	c.(7366-7368)CTC>CCC	p.L2456P	BOD1L_uc010idr.1_Missense_Mutation_p.L1793P	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2456							DNA binding			ovary(5)|breast(1)	6						TGCATTTATGAGGTGTAAAGT	0.468000											OREG0016115	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	93					0	0	0.014758	0	0
RELL1	768211	broad.mit.edu	37	4	37650975	37650975	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:37650975T>A	uc003gsz.2	-	2	326	c.236A>T	c.(235-237)CAC>CTC	p.H79L	RELL1_uc010ifc.2_Missense_Mutation_p.H79L	NM_001085399	NP_001078868	Q8IUW5	RELL1_HUMAN	receptor expressed in lymphoid tissues like 1	79	Cytoplasmic (Potential).					cytoplasm|integral to membrane|microtubule cytoskeleton|plasma membrane					0						CTTAAGCAGGTGGCAAATGAG	0.443000													25	201					0	0	0.021523	0	0
DMP1	1758	broad.mit.edu	37	4	88583660	88583660	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:88583660G>A	uc003hqv.2	+	6	834	c.730G>A	c.(730-732)GAA>AAA	p.E244K	DMP1_uc003hqw.2_Missense_Mutation_p.E228K	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	244					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		AGAATCTGGAGAAAACAGTGA	0.468000													3	40					0	0	0.004672	0	0
CENPE	1062	broad.mit.edu	37	4	104070327	104070327	+	Missense_Mutation	SNP	A	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr4:104070327A>T	uc003hxb.1	-	27	3725	c.3635T>A	c.(3634-3636)TTT>TAT	p.F1212Y	CENPE_uc003hxc.1_Missense_Mutation_p.F1187Y	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1212	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CTCTGTTTCAAATGACTTCTG	0.323000													15	49					0	0	0.024245	0	0
C5orf36	285600	broad.mit.edu	37	5	93856481	93856481	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr5:93856481A>C	uc011cuk.1	-	5	699	c.442T>G	c.(442-444)TCT>GCT	p.S148A	C5orf36_uc003kkp.2_Missense_Mutation_p.S148A	NM_001145678	NP_001139150	Q8IV33	K0825_HUMAN	hypothetical protein LOC285600 isoform 1	148											0		all_cancers(142;2.12e-08)|all_epithelial(76;5.95e-11)|all_lung(232;0.000996)|Lung NSC(167;0.0108)|Ovarian(174;0.0218)|Colorectal(57;0.0329)|Breast(839;0.214)|Lung SC(612;0.236)		all cancers(79;3.96e-19)		TCTTCAACAGAATGAAGAGAC	0.418000													15	43					0	0	0.020292	0	0
HSD17B4	3295	broad.mit.edu	37	5	118824931	118824931	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr5:118824931C>T	uc003ksj.2	+	9	790	c.667C>T	c.(667-669)CTT>TTT	p.L223F	HSD17B4_uc011cwg.1_Missense_Mutation_p.L199F|HSD17B4_uc011cwh.1_Missense_Mutation_p.L205F|HSD17B4_uc011cwi.1_Missense_Mutation_p.L248F|HSD17B4_uc003ksk.3_Missense_Mutation_p.L76F|HSD17B4_uc011cwj.1_Missense_Mutation_p.L76F|HSD17B4_uc010jcn.1_5'UTR	NM_000414	NP_000405	P51659	DHB4_HUMAN	hydroxysteroid (17-beta) dehydrogenase 4	223	(3R)-hydroxyacyl-CoA dehydrogenase.				bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3-hydroxyacyl-CoA dehydrogenase activity|3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity|estradiol 17-beta-dehydrogenase activity|isomerase activity|long-chain-enoyl-CoA hydratase activity|protein binding|sterol binding|sterol transporter activity			ovary(1)|pancreas(1)	2		all_cancers(142;0.0206)|Prostate(80;0.0322)		OV - Ovarian serous cystadenocarcinoma(64;0.000247)|Epithelial(69;0.000849)|all cancers(49;0.0122)	NADH(DB00157)	ACCTCTTGTCCTTTGGCTTTG	0.378000													41	89					0	0	0.014410	0	0
ZNF608	57507	broad.mit.edu	37	5	123980011	123980011	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr5:123980011G>A	uc003ktq.1	-	5	4172	c.4049C>T	c.(4048-4050)CCT>CTT	p.P1350L	ZNF608_uc003ktr.1_RNA|ZNF608_uc003ktp.1_Missense_Mutation_p.P45L	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1350						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CTGTGGGTAAGGATAAGCATG	0.502000													17	83					0	0	0.028581	0	0
GPR116	221395	broad.mit.edu	37	6	46867766	46867766	+	Missense_Mutation	SNP	C	A	A	rs145334563	byFrequency	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr6:46867766C>A	uc003oyo.3	-	3	446	c.157G>T	c.(157-159)GTT>TTT	p.V53F	GPR116_uc003oyp.3_Missense_Mutation_p.V53F|GPR116_uc003oyq.3_Missense_Mutation_p.V53F|GPR116_uc003oyr.2_Missense_Mutation_p.V53F	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	53	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			GTTTACATACCGGCTCGTTTT	0.383000													15	56					4.63292e-17	5.36685e-17	0.008871	1	0
RFX6	222546	broad.mit.edu	37	6	117249981	117249981	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr6:117249981C>A	uc003pxm.2	+	18	2521	c.2458C>A	c.(2458-2460)CAG>AAG	p.Q820K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	820					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AATGGTGAATCAGCACGTTTC	0.433000													25	117					5.77227e-19	6.82177e-19	0.037714	1	0
HEBP2	23593	broad.mit.edu	37	6	138727187	138727187	+	Silent	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr6:138727187C>A	uc003qhw.1	+	3	615	c.318C>A	c.(316-318)ACC>ACA	p.T106T		NM_014320	NP_055135	Q9Y5Z4	HEBP2_HUMAN	heme binding protein 2	106						mitochondrion					0	Breast(32;0.0933)			GBM - Glioblastoma multiforme(68;0.000732)|OV - Ovarian serous cystadenocarcinoma(155;0.00171)		CTACCATTACCATTTCCCTGT	0.423000													32	140					6.00712e-18	7.02833e-18	0.012213	1	0
PMS2	5395	broad.mit.edu	37	7	6035170	6035170	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:6035170C>T	uc003spl.2	-	8	985	c.898G>A	c.(898-900)GCA>ACA	p.A300T	PMS2_uc003spj.2_Missense_Mutation_p.A194T|PMS2_uc003spk.2_Missense_Mutation_p.A165T|PMS2_uc011jwl.1_Missense_Mutation_p.A165T|PMS2_uc010ktg.2_5'UTR|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Missense_Mutation_p.A300T	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	300					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		AATACCTTTGCTGGGTCACAA	0.383000			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				26	65					0	0	0.024334	0	0
POU6F2	11281	broad.mit.edu	37	7	39446255	39446255	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:39446255C>T	uc003thb.1	+	6	984	c.942C>T	c.(940-942)TCC>TCT	p.S314S		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	314	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCATGAGCTCCATAGCAAGCT	0.532000													29	63					0	0	0.034045	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44805818	44805818	+	Silent	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:44805818C>G	uc003tlr.2	+	17	2421	c.2298C>G	c.(2296-2298)CCC>CCG	p.P766P	ZMIZ2_uc003tlq.2_Silent_p.P708P|ZMIZ2_uc003tls.2_Silent_p.P740P|ZMIZ2_uc003tlt.2_Silent_p.P389P|ZMIZ2_uc010kyj.2_Silent_p.P288P|ZMIZ2_uc003tlu.2_Silent_p.P47P|ZMIZ2_uc010kyk.1_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	766	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CCACCACGCCCAGCACCCCAA	0.632000													16	101					0	0	0.038395	0	0
CYP3A43	64816	broad.mit.edu	37	7	99454477	99454477	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:99454477C>A	uc003urx.1	+	9	923	c.820C>A	c.(820-822)CAG>AAG	p.Q274K	CYP3A43_uc003ury.1_Missense_Mutation_p.Q274K|CYP3A43_uc003urz.1_Missense_Mutation_p.Q274K|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Missense_Mutation_p.Q164K|CYP3A43_uc003usb.1_Missense_Mutation_p.Q134K	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	274			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TTTCTTTCAACAGATGATCGA	0.438000													17	148					0.000422831	0.000453865	0.028581	1	0
ZAN	7455	broad.mit.edu	37	7	100361742	100361742	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:100361742C>T	uc003uwj.2	+	22	4355	c.4190C>T	c.(4189-4191)ACA>ATA	p.T1397I	ZAN_uc003uwk.2_Missense_Mutation_p.T1397I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kkd.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1397	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CTGCTGTGCACACACATGTCC	0.607000													17	25					0	0	0.008871	0	0
CPA4	51200	broad.mit.edu	37	7	129962495	129962495	+	Silent	SNP	T	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:129962495T>C	uc003vpr.2	+	11	1292	c.1245T>C	c.(1243-1245)CAT>CAC	p.H415H	CPA4_uc011kpd.1_Silent_p.H382H|CPA4_uc011kpe.1_Silent_p.H311H	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	415					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TCATGGAGCATGTGCGGGACA	0.537000													31	122					0	0	0.019004	0	0
CPA4	51200	broad.mit.edu	37	7	129962499	129962499	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:129962499C>T	uc003vpr.2	+	11	1296	c.1249C>T	c.(1249-1251)CGG>TGG	p.R417W	CPA4_uc011kpd.1_Missense_Mutation_p.R384W|CPA4_uc011kpe.1_Missense_Mutation_p.R313W	NM_016352	NP_057436	Q9UI42	CBPA4_HUMAN	carboxypeptidase A4 preproprotein	417					histone acetylation|proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					GGAGCATGTGCGGGACAACCT	0.542000													36	118					0	0	0.025465	0	0
AKR1B15	441282	broad.mit.edu	37	7	134260620	134260620	+	Silent	SNP	C	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:134260620C>T	uc011kpr.1	+	8	983	c.684C>T	c.(682-684)TGC>TGT	p.C228C	AKR1B15_uc011kps.1_Silent_p.C200C	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	228							oxidoreductase activity			ovary(1)	1						TCCAGTACTGCCACTCCAAGG	0.532000													12	62					0	0	0.033300	0	0
SVOPL	136306	broad.mit.edu	37	7	138281232	138281232	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:138281232G>A	uc011kqh.1	-	14	1397	c.1397C>T	c.(1396-1398)TCA>TTA	p.S466L	SVOPL_uc003vue.2_Missense_Mutation_p.S314L	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	466	Helical; (Potential).					integral to membrane	transmembrane transporter activity				0						ACAGACAGATGAGAAGAGACA	0.463000													12	67					0	0	0.016723	0	0
ZNF777	27153	broad.mit.edu	37	7	149152518	149152518	+	Missense_Mutation	SNP	A	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:149152518A>T	uc003wfv.2	-	2	759	c.596T>A	c.(595-597)CTG>CAG	p.L199Q		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	199					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CTGGGCCTCCAGCTTCCTCTC	0.597000													42	142					0	0	0.036044	0	0
TSNARE1	203062	broad.mit.edu	37	8	143381927	143381927	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr8:143381927C>G	uc003ywk.2	-	10	1328	c.1210G>C	c.(1210-1212)GAG>CAG	p.E404Q	TSNARE1_uc011lju.1_Missense_Mutation_p.E403Q|TSNARE1_uc003ywj.2_Missense_Mutation_p.E405Q|TSNARE1_uc003ywl.3_Missense_Mutation_p.E185Q	NM_145003	NP_659440	Q96NA8	TSNA1_HUMAN	t-SNARE domain containing 1	404					vesicle-mediated transport	integral to membrane					0	all_cancers(97;7.39e-11)|all_epithelial(106;8.98e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000332)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGCGCCTGCTCCTGGCCCTGC	0.617000													13	83					0	0	0.016723	0	0
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:35906559A>C	uc003zyr.1	+	1	371	c.275A>C	c.(274-276)CAC>CCC	p.H92P	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	92	His-rich.					integral to membrane					0						caccaccaccacccccgccac	0.393000													4	11					0	0	0.013537	0	0
TSTD2	158427	broad.mit.edu	37	9	100368460	100368460	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:100368460G>T	uc004axn.2	-	7	1407	c.919C>A	c.(919-921)CTT>ATT	p.L307I	TSTD2_uc004axo.2_Missense_Mutation_p.L81I|TSTD2_uc004axp.1_Missense_Mutation_p.L81I	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	307	Rhodanese.							p.L307I(1)		ovary(2)	2						CAATCAAGAAGGATAGTATCA	0.353000													8	56					0.00307968	0.00321716	0.038147	1	0
PKN3	29941	broad.mit.edu	37	9	131476565	131476565	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:131476565C>A	uc004bvw.2	+	11	1795	c.1402C>A	c.(1402-1404)CCG>ACG	p.P468T	PKN3_uc010myh.2_Missense_Mutation_p.P468T|PKN3_uc011mbk.1_Missense_Mutation_p.P18T	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	468	Pro-rich.				signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CTGCAGCTCCCCGAGCACAAT	0.647000													36	161					1.67305e-13	1.88218e-13	0.025465	1	0
ZER1	10444	broad.mit.edu	37	9	131512978	131512978	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:131512978A>G	uc004bwa.1	-	8	1709	c.1276T>C	c.(1276-1278)TAC>CAC	p.Y426H		NM_006336	NP_006327	Q7Z7L7	ZER1_HUMAN	zyg-11 homolog B (C. elegans)-like	426					ATP hydrolysis coupled proton transport|regulation of ubiquitin-protein ligase activity	Cul2-RING ubiquitin ligase complex|vacuolar proton-transporting V-type ATPase, V1 domain	protein binding|proton-transporting ATPase activity, rotational mechanism|ubiquitin-protein ligase activity			ovary(1)	1						TCTGAGCGGTACTCGGAATTT	0.562000													16	81					0	0	0.024245	0	0
ZXDB	158586	broad.mit.edu	37	X	57619097	57619097	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chrX:57619097G>A	uc004dvd.2	+	1	829	c.616G>A	c.(616-618)GGG>AGG	p.G206R		NM_007157	NP_009088	P98169	ZXDB_HUMAN	zinc finger, X-linked, duplicated B	206					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CCAGCAGCCCGGGTGTCTGAT	0.711000													3	14					0	0	0.004672	0	0
KIF4A	24137	broad.mit.edu	37	X	69595071	69595071	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chrX:69595071G>A	uc004dyg.2	+	17	1923	c.1796G>A	c.(1795-1797)CGC>CAC	p.R599H	KIF4A_uc010nkw.2_Missense_Mutation_p.R599H|KIF4A_uc004dyf.1_Missense_Mutation_p.R599H	NM_012310	NP_036442	O95239	KIF4A_HUMAN	kinesin family member 4	599	Potential.				anterograde axon cargo transport|axon guidance|blood coagulation|organelle organization	chromosome|cytosol|midbody|nuclear matrix|spindle microtubule	ATP binding|DNA binding|microtubule motor activity|protein binding			ovary(4)	4						GAGCGCCGCCGCAAACGTCTC	0.468000													3	26					0	0	0.004672	0	0
PAK3	5063	broad.mit.edu	37	X	110366494	110366494	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chrX:110366494G>A	uc004epa.2	+	1	190	c.163G>A	c.(163-165)GGA>AGA	p.G55R	PAK3_uc010npt.1_Missense_Mutation_p.G55R|PAK3_uc010npu.1_Missense_Mutation_p.G55R|PAK3_uc004eoy.1_5'UTR|PAK3_uc004eoz.2_Missense_Mutation_p.G55R|PAK3_uc011mst.1_RNA|PAK3_uc010npv.1_Missense_Mutation_p.G55R|PAK3_uc010npw.1_Missense_Mutation_p.G55R|uc004epb.2_5'Flank	NM_001128173	NP_001121645	O75914	PAK3_HUMAN	p21-activated kinase 3 isoform d	55					multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			lung(6)|ovary(3)|large_intestine(1)	10						CTTCCCAGGAGGAGGGGATAA	0.448000										TSP Lung(19;0.15)			12	30					0	0	0.016723	0	0
WDR47	22911	broad.mit.edu	37	1	109554105	109554105	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr1:109554105delT	uc001dwj.2	-	5	939	c.563delA	c.(562-564)AAGfs	p.K188fs	WDR47_uc001dwl.2_Frame_Shift_Del_p.K195fs|WDR47_uc001dwi.2_Frame_Shift_Del_p.K188fs|WDR47_uc001dwk.2_Frame_Shift_Del_p.K160fs|WDR47_uc010ovf.1_Frame_Shift_Del_p.K115fs	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	188										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GTTACTAGCCTTAAAACCAGC	0.413													55	291	---	---	---	---					
MMRN2	79812	broad.mit.edu	37	10	88705024	88705026	+	Splice_Site	DEL	ATC	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr10:88705024_88705026delATC	uc001kea.2	-	4	528	c.401_splice	c.e4-1	p.D134_splice	MMRN2_uc010qmn.1_Intron|MMRN2_uc009xtb.2_Splice_Site_p.D91_splice	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor							extracellular space				large_intestine(1)	1						TTGCCATGGAATCTGCAGAAGAA	0.571													9	53	---	---	---	---					
C16orf92	146378	broad.mit.edu	37	16	30035201	30035219	+	Splice_Site	DEL	ACTCAGGTATGAACCAGCT	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr16:30035201_30035219delACTCAGGTATGAACCAGCT	uc002dvs.2	+	2	310	c.289_splice	c.e2+1	p.G97_splice	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|C16orf92_uc002dvr.2_Splice_Site_p.G75_splice	NM_001109660	NP_001103130	Q96LL3	CP092_HUMAN	hypothetical protein LOC146378 isoform 2							integral to membrane					0						GTGTTCATTAACTCAGGTATGAACCAGCTTGAGAAGGGA	0.543													10	53	---	---	---	---					
WIPF2	147179	broad.mit.edu	37	17	38420795	38420800	+	In_Frame_Del	DEL	CCAAGG	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:38420795_38420800delCCAAGG	uc002hug.1	+	5	607_612	c.367_372delCCAAGG	c.(367-372)CCAAGGdel	p.PR123del	WIPF2_uc002huh.1_5'UTR|WIPF2_uc010cww.1_5'UTR|WIPF2_uc002hui.1_In_Frame_Del_p.PR123del|WIPF2_uc010cwx.1_Intron|WIPF2_uc010cwy.1_In_Frame_Del_p.PR123del	NM_133264	NP_573571	Q8TF74	WIPF2_HUMAN	WIRE protein	123_124						cytoplasm|cytoskeleton	actin binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						AGCTGCTGCCCCAAGGCCTCCAGTAT	0.573										HNSCC(43;0.11)			24	117	---	---	---	---					
SCRN2	90507	broad.mit.edu	37	17	45916884	45916884	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr17:45916884delA	uc002imd.2	-	4	608	c.482delT	c.(481-483)TTCfs	p.F161fs	SCRN2_uc002imc.2_Frame_Shift_Del_p.F169fs|SCRN2_uc002imf.2_Frame_Shift_Del_p.F161fs|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	161					proteolysis		dipeptidase activity			ovary(1)	1						AGCCAGCAGGAAGGTGCTATG	0.617													12	197	---	---	---	---					
ZNF227	7770	broad.mit.edu	37	19	44739499	44739499	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr19:44739499delT	uc002oyu.2	+	6	1121	c.916delT	c.(916-918)TTCfs	p.F306fs	ZNF227_uc010xwu.1_Frame_Shift_Del_p.F255fs|ZNF227_uc002oyv.2_Frame_Shift_Del_p.F306fs|ZNF227_uc010xwv.1_Frame_Shift_Del_p.F255fs|ZNF227_uc010xww.1_Frame_Shift_Del_p.F227fs|ZNF227_uc002oyw.2_Frame_Shift_Del_p.F278fs|ZNF227_uc010ejh.2_Frame_Shift_Del_p.F299fs|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				TGGTGATTGCTTCAATAAGAG	0.418													9	75	---	---	---	---					
ADCY5	111	broad.mit.edu	37	3	123166392	123166392	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr3:123166392delA	uc003egh.1	-	1	1001	c.1001delT	c.(1000-1002)TTCfs	p.F334fs		NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	334	Helical; (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		GTAGATGAAGAACACGGTCCA	0.692													8	28	---	---	---	---					
GPR98	84059	broad.mit.edu	37	5	89953910	89953915	+	In_Frame_Del	DEL	AAATCA	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr5:89953910_89953915delAAATCA	uc003kju.2	+	21	4663_4668	c.4567_4572delAAATCA	c.(4567-4572)AAATCAdel	p.KS1523del	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1523_1524	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGAAACTAACAAATCATTCATTATTT	0.374													30	101	---	---	---	---					
DMTF1	9988	broad.mit.edu	37	7	86808890	86808890	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:86808890delC	uc003uih.2	+	8	875	c.549delC	c.(547-549)ATCfs	p.I183fs	DMTF1_uc003uii.2_5'UTR|DMTF1_uc003uij.2_5'UTR|DMTF1_uc011khb.1_Frame_Shift_Del_p.I95fs|DMTF1_uc003uik.2_RNA|DMTF1_uc003uil.2_Frame_Shift_Del_p.I183fs|DMTF1_uc003uim.1_Frame_Shift_Del_p.I183fs|DMTF1_uc003uin.2_5'UTR	NM_001142327	NP_001135799	Q9Y222	DMTF1_HUMAN	cyclin D binding myb-like transcription factor 1	183	Interaction with CCND1, CCND2 and CCND3 (By similarity).|Interaction with CCND2 (By similarity).|Required for DNA-binding (By similarity).				cell cycle	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(14;0.0058)					CTACAGAAATCATCTTTGAGA	0.363													10	43	---	---	---	---					
VIPR2	7434	broad.mit.edu	37	7	158902583	158902587	+	Frame_Shift_Del	DEL	GTGAT	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr7:158902583_158902587delGTGAT	uc003woh.2	-	3	361_365	c.175_179delATCAC	c.(175-180)ATCACGfs	p.I59fs	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	59_60	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CCGCCAGCACGTGATGTTGTCCCAG	0.527													7	103	---	---	---	---					
SLC31A1	1317	broad.mit.edu	37	9	116018468	116018469	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:116018468_116018469insC	uc004bgu.2	+	2	226_227	c.40_41insC	c.(40-42)TCCfs	p.S14fs	FKBP15_uc010muu.1_Intron|SLC31A1_uc004bgv.3_Frame_Shift_Ins_p.S14fs	NM_001859	NP_001850	O15431	COPT1_HUMAN	solute carrier family 31 (copper transporters),	14	Extracellular (Potential).					integral to plasma membrane	copper ion transmembrane transporter activity				0						CTATATGGACTCCAACAGTACC	0.436													18	101	---	---	---	---					
OR1N2	138882	broad.mit.edu	37	9	125316283	125316283	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	g.chr9:125316283delC	uc011lyx.1	+	1	835	c.835delC	c.(835-837)CCTfs	p.P279fs		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	279	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GTATTTACTTCCTCCATCAAC	0.463													21	119	---	---	---	---					
