Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGL	178	broad.mit.edu	37	1	100346675	100346675	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr1:100346675C>G	uc001dsi.1	+	15	2343	c.1943C>G	c.(1942-1944)TCT>TGT	p.S648C	AGL_uc001dsj.1_Missense_Mutation_p.S648C|AGL_uc001dsk.1_Missense_Mutation_p.S648C|AGL_uc001dsl.1_Missense_Mutation_p.S648C|AGL_uc001dsm.1_Missense_Mutation_p.S632C|AGL_uc001dsn.1_Missense_Mutation_p.S631C	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	648	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		ACAATTGTTTCTATGGCATGT	0.368000													38	41					0	0	0.00148497	0	0
TMEM79	84283	broad.mit.edu	37	1	156256105	156256105	+	Missense_Mutation	SNP	G	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr1:156256105G>C	uc010phi.1	+	3	1008	c.812G>C	c.(811-813)GGG>GCG	p.G271A	TMEM79_uc001fod.2_Missense_Mutation_p.G112A|TMEM79_uc009wrw.2_Missense_Mutation_p.G271A	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	271						integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					CGGCCCTTTGGGGAGCCACGG	0.577000													3	84					0	0	6.4e-05	0	0
BAT2L2	23215	broad.mit.edu	37	1	171535917	171535917	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr1:171535917G>A	uc010pmg.1	+	22	6753	c.6487G>A	c.(6487-6489)GAA>AAA	p.E2163K	BAT2L2_uc010pmh.1_Missense_Mutation_p.E1140K|BAT2L2_uc010pmi.1_5'UTR	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2163							protein C-terminus binding				0						AGCAGTCTCAGAAATGTCTAC	0.448000													10	24					0	0	0.000673444	0	0
AGT	183	broad.mit.edu	37	1	230841797	230841797	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr1:230841797A>T	uc001hty.3	-	3	1514	c.1006T>A	c.(1006-1008)TTC>ATC	p.F336I	AGT_uc009xfe.2_Missense_Mutation_p.F336I|AGT_uc009xff.2_Missense_Mutation_p.F308I	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	336					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	CTCTCAGTGAAGGGCACTTGA	0.562000													45	61					0	0	0.000781405	0	0
DIP2C	22982	broad.mit.edu	37	10	375449	375449	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:375449A>T	uc001ifp.2	-	30	3767	c.3677T>A	c.(3676-3678)GTC>GAC	p.V1226D		NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1226						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CGTGTCTCGGACTTTGTACTG	0.577000													21	27					0	0	0.00188189	0	0
ZEB1	6935	broad.mit.edu	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	T	T	rs35653460		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:31812949G>T	uc001ivs.3	+	8	2753	c.2690G>T	c.(2689-2691)CGG>CTG	p.R897L	ZEB1_uc001ivr.3_Missense_Mutation_p.R679L|ZEB1_uc010qee.1_Missense_Mutation_p.R679L|ZEB1_uc010qef.1_Missense_Mutation_p.R679L|ZEB1_uc009xlk.1_Missense_Mutation_p.R679L|ZEB1_uc001ivt.3_Missense_Mutation_p.R679L|ZEB1_uc001ivu.3_Missense_Mutation_p.R898L|ZEB1_uc001ivv.3_Missense_Mutation_p.R877L|ZEB1_uc010qeh.1_Missense_Mutation_p.R830L|ZEB1_uc009xlp.2_Missense_Mutation_p.R881L	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	897					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAGAAAATGCGGAAGACAGAA	0.373000													47	78					4.10826e-27	8.13649e-26	0.000781405	1	0
SLK	9748	broad.mit.edu	37	10	105763115	105763115	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:105763115G>A	uc001kxo.1	+	9	2213	c.2179G>A	c.(2179-2181)GGT>AGT	p.G727S	SLK_uc001kxp.1_Missense_Mutation_p.G727S	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	727					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGAAGAAATAGGTTCTTTATC	0.393000													28	34					0	0	0.000878237	0	0
SEC23IP	11196	broad.mit.edu	37	10	121692658	121692658	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:121692658T>C	uc001leu.1	+	17	2972	c.2900T>C	c.(2899-2901)CTT>CCT	p.L967P	SEC23IP_uc010qtc.1_Missense_Mutation_p.L756P|SEC23IP_uc009xzk.1_RNA	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	967	DDHD.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		CTTTTCGCTCTTCAGAGTCAC	0.383000													52	66					0	0	0.000781405	0	0
ADAM12	8038	broad.mit.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:127789653G>A	uc001ljk.2	-	9	1321	c.908C>T	c.(907-909)GCG>GTG	p.A303V	ADAM12_uc010qul.1_Missense_Mutation_p.A254V|ADAM12_uc001ljm.2_Missense_Mutation_p.A303V|ADAM12_uc001ljn.2_Missense_Mutation_p.A300V|ADAM12_uc001ljl.3_Missense_Mutation_p.A300V	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	303	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		GACAAGCTGCGCATTGTCATG	0.507000													5	46					0	0	0.00116845	0	0
DOCK1	1793	broad.mit.edu	37	10	128788791	128788791	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr10:128788791C>G	uc001ljt.2	+	6	461	c.397C>G	c.(397-399)CTT>GTT	p.L133V	DOCK1_uc010qun.1_Missense_Mutation_p.L133V	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	133					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ATCACAAATTCTTTCTGGAAC	0.393000													11	12					0	0	0.000673444	0	0
OR56A1	120796	broad.mit.edu	37	11	6048449	6048449	+	Silent	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr11:6048449A>G	uc010qzw.1	-	1	486	c.486T>C	c.(484-486)CTT>CTC	p.L162L		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGTGCAGTAAGAAGCGCAT	0.498000													43	52					0	0	0.000781405	0	0
KIAA1826	84437	broad.mit.edu	37	11	105881299	105881299	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr11:105881299C>G	uc001piy.2	-	2	519	c.346G>C	c.(346-348)GGA>CGA	p.G116R	KIAA1826_uc001piz.2_Missense_Mutation_p.G116R	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	116						nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		TTTCGGAATCCAATCTTTTCA	0.443000													3	122					0	0	6.4e-05	0	0
LOC653113	653113	broad.mit.edu	37	12	8384397	8384397	+	RNA	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr12:8384397C>T	uc010sgk.1	-	5		c.1391G>A				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CCCCAGGGCCCCTGCTGTCCT	0.587000													6	77					0	0	0.000673444	0	0
KIAA0528	9847	broad.mit.edu	37	12	22623804	22623804	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr12:22623804C>T	uc001rfq.2	-	21	2628	c.2400G>A	c.(2398-2400)CAG>CAA	p.Q800Q	KIAA0528_uc010sir.1_Silent_p.Q615Q|KIAA0528_uc010sis.1_Silent_p.Q800Q|KIAA0528_uc010sit.1_Silent_p.Q802Q|KIAA0528_uc010siu.1_Silent_p.Q800Q|KIAA0528_uc001rfr.2_Silent_p.Q791Q	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	800							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TTTGTAAAGCCTGATTTTTGT	0.343000													20	51					0	0	0.00188189	0	0
ITGB7	3695	broad.mit.edu	37	12	53586547	53586547	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr12:53586547T>C	uc009zmv.2	-	12	1945	c.1874A>G	c.(1873-1875)CAG>CGG	p.Q625R	ITGB7_uc001scc.2_Missense_Mutation_p.Q625R|ITGB7_uc010snz.1_Intron	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	625	Cysteine-rich tandem repeats.|Extracellular (Potential).|IV.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						GTCCAAGCACTGGCAGCGGTT	0.597000													51	36					0	0	0.000781405	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr13:115047559C>T	uc001vup.2	+	2	308	c.271C>T	c.(271-273)CTG>TTG	p.L91L	UPF3A_uc010tkn.1_Silent_p.L91L|UPF3A_uc001vuq.2_Silent_p.L91L|UPF3A_uc001vus.2_RNA|UPF3A_uc001vur.2_RNA	NM_023011	NP_075387	Q9H1J1	REN3A_HUMAN	UPF3 regulator of nonsense transcripts homolog A	91	Required for interaction with UPF2.				mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|nucleus|plasma membrane	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			skin(1)	1	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0191)|all_epithelial(44;0.00716)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.238)	BRCA - Breast invasive adenocarcinoma(86;0.0886)	OV - Ovarian serous cystadenocarcinoma(48;0.195)|Epithelial(10;0.2)		GCTGCGCCCGCTGCCAGCACA	0.731000													3	13					0	0	6.4e-05	0	0
FSCB	84075	broad.mit.edu	37	14	44975261	44975261	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr14:44975261C>T	uc001wvn.2	-	1	1239	c.930G>A	c.(928-930)GCG>GCA	p.A310A		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	310						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CAGAATTCTCCGCAACTGCAG	0.527000													35	44					0	0	0.00058488	0	0
TDP1	55775	broad.mit.edu	37	14	90429932	90429932	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr14:90429932G>A	uc001xxy.2	+	3	773	c.474G>A	c.(472-474)CTG>CTA	p.L158L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.L158L|TDP1_uc010atn.2_Silent_p.L158L|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.L158L|TDP1_uc001xyc.1_Silent_p.L158L	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	158					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		GGGACATGCTGGATAAAGGGA	0.512000								Repair_of_DNA-protein_crosslinks					44	59					0	0	0.000589545	0	0
LRRC49	54839	broad.mit.edu	37	15	71341787	71341787	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr15:71341787G>A	uc002asw.2	+	16	2144	c.1897G>A	c.(1897-1899)GAA>AAA	p.E633K	LRRC49_uc002asu.2_Missense_Mutation_p.E623K|LRRC49_uc002asx.2_Missense_Mutation_p.E589K|LRRC49_uc010ukf.1_Missense_Mutation_p.E638K|LRRC49_uc002asy.2_Missense_Mutation_p.E339K|LRRC49_uc002asz.2_Missense_Mutation_p.E605K	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	633						cytoplasm|microtubule				ovary(1)	1						AACATATATAGAAGACCTTGT	0.333000													35	67					0	0	0.000491102	0	0
LRRC49	54839	broad.mit.edu	37	15	71341790	71341790	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr15:71341790G>A	uc002asw.2	+	16	2147	c.1900G>A	c.(1900-1902)GAC>AAC	p.D634N	LRRC49_uc002asu.2_Missense_Mutation_p.D624N|LRRC49_uc002asx.2_Missense_Mutation_p.D590N|LRRC49_uc010ukf.1_Missense_Mutation_p.D639N|LRRC49_uc002asy.2_Missense_Mutation_p.D340N|LRRC49_uc002asz.2_Missense_Mutation_p.D606N	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	634						cytoplasm|microtubule				ovary(1)	1						ATATATAGAAGACCTTGTGAA	0.333000													38	66					0	0	0.000814825	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85056021	85056021	+	RNA	SNP	T	C	C	rs1062001		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr15:85056021T>C	uc002bkm.2	-	6		c.539A>G				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GTAGCTGCTCTACCTTAGATG	0.502000													3	17					0	0	6.4e-05	0	0
SRRM2	23524	broad.mit.edu	37	16	2814253	2814253	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr16:2814253G>A	uc002crk.2	+	11	4273	c.3724G>A	c.(3724-3726)GTA>ATA	p.V1242I	SRRM2_uc002crj.1_Missense_Mutation_p.V1146I|SRRM2_uc002crl.1_Missense_Mutation_p.V1242I|SRRM2_uc010bsu.1_Missense_Mutation_p.V1146I	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1242	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AATGGAGGTGGTAGAGAAGTC	0.443000													61	196					0	0	0.000781405	0	0
SRCAP	10847	broad.mit.edu	37	16	30735227	30735227	+	Silent	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr16:30735227A>C	uc002dze.1	+	25	4867	c.4482A>C	c.(4480-4482)GCA>GCC	p.A1494A	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.A1289A|SRCAP_uc010bzz.1_Silent_p.A1064A	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1494	Pro-rich.			A -> Q (in Ref. 6; AAD39760).	interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCTCCTTGGCACCATCTGGTG	0.587000													4	136					0	0	8.12818e-05	0	0
C16orf86	388284	broad.mit.edu	37	16	67702137	67702137	+	Nonsense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr16:67702137C>G	uc002ety.2	+	4	745	c.588C>G	c.(586-588)TAC>TAG	p.Y196*	C16orf48_uc002etw.1_5'Flank|C16orf48_uc010cem.1_5'Flank|C16orf86_uc002etx.1_3'UTR|C16orf86_uc002etz.2_RNA	NM_001012984	NP_001013002	Q6ZW13	CP086_HUMAN	hypothetical protein LOC388284	196											0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		TGTACCAGTACGTCAACTATT	0.667000											OREG0023886	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	14					0	0	0.000566183	0	0
CPNE7	27132	broad.mit.edu	37	16	89662976	89662976	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr16:89662976C>A	uc002fnp.2	+	17	1979	c.1849C>A	c.(1849-1851)CCG>ACG	p.P617T	CPNE7_uc002fnq.2_Missense_Mutation_p.P542T	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	617					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		AGGCCTGCCCCCGAGAAGCCT	0.667000													8	81					0.000157383	0.00285726	0.000157383	1	0
SCARF1	8578	broad.mit.edu	37	17	1538231	1538231	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:1538231T>C	uc002fsz.1	-	11	2364	c.2314A>G	c.(2314-2316)AGA>GGA	p.R772G	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.R686G	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	772	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCCTCTGGTCTGACTGCCATA	0.657000													44	33					0	0	0.000437636	0	0
CAMKK1	84254	broad.mit.edu	37	17	3788622	3788622	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:3788622C>G	uc002fwt.2	-	2	454	c.360G>C	c.(358-360)GAG>GAC	p.E120D	CAMKK1_uc002fwu.2_Missense_Mutation_p.E120D|CAMKK1_uc002fwv.2_Missense_Mutation_p.E120D	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	120					synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		CCCCACCAACCTCTGCATCTG	0.488000													12	24					0	0	0.00185496	0	0
ZNF232	7775	broad.mit.edu	37	17	5009512	5009512	+	Silent	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:5009512A>G	uc002gas.2	-	5	1615	c.861T>C	c.(859-861)TAT>TAC	p.Y287Y	ZNF232_uc002gar.1_Silent_p.Y305Y|ZNF232_uc002gat.2_Silent_p.Y314Y	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	287	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GATGTGAGTTATAAATGAAGG	0.428000													42	124					0	0	0.00195071	0	0
POLDIP2	26073	broad.mit.edu	37	17	26684350	26684351	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:26684350_26684351GC>AT	uc002haz.2	-	4	256_257	c.124_125GC>AT	c.(124-126)GCG>ATG	p.A42M	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2	42						mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CGTGGTCGACGCTGGCGAGAAG	0.738000													14	10					0	0	6.4e-05	0	0
SLC13A2	9058	broad.mit.edu	37	17	26818545	26818545	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:26818545G>A	uc002hbh.2	+	5	732	c.665G>A	c.(664-666)AGC>AAC	p.S222N	SLC13A2_uc010wal.1_Missense_Mutation_p.S179N|SLC13A2_uc010wam.1_Missense_Mutation_p.S178N|SLC13A2_uc010wan.1_Missense_Mutation_p.S271N|SLC13A2_uc010wao.1_Missense_Mutation_p.S179N|SLC13A2_uc002hbi.2_Missense_Mutation_p.S151N	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	222	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CAGTGCATGAGCCTGTGCGTG	0.617000													40	89					0	0	0.000437636	0	0
SPAG5	10615	broad.mit.edu	37	17	26919846	26919846	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:26919846T>C	uc002hbq.2	-	3	508	c.416A>G	c.(415-417)CAG>CGG	p.Q139R	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	139					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					GTCTTGTTGCTGCCCCAGTGG	0.453000													121	85					0	0	0.000781405	0	0
UNC13D	201294	broad.mit.edu	37	17	73831766	73831766	+	Silent	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:73831766G>T	uc002jpp.2	-	19	2069	c.1689C>A	c.(1687-1689)CTC>CTA	p.L563L	UNC13D_uc010wsk.1_Silent_p.L563L|UNC13D_uc002jpq.1_Silent_p.L213L	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	563	MHD1.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGAGCTCCTTGAGGCTGATGT	0.637000									Familial_Hemophagocytic_Lymphohistiocytosis				21	43					3.51602e-12	6.61966e-11	0.00121646	1	0
CTAGE1	64693	broad.mit.edu	37	18	19997258	19997258	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr18:19997258G>A	uc002ktv.1	-	1	621	c.517C>T	c.(517-519)CGG>TGG	p.R173W		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	173	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					ATCTCCAACCGTTCTTCATTC	0.388000													59	77					0	0	0.000781405	0	0
ZNF20	7568	broad.mit.edu	37	19	12246707	12246707	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr19:12246707A>C	uc002mtf.1	-	2	159	c.16T>G	c.(16-18)TCA>GCA	p.S6A	ZNF20_uc002mte.1_Translation_Start_Site|ZNF20_uc002mtg.1_Missense_Mutation_p.S6A	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGGCCACTGAATCCTGAAAC	0.468000													32	38					0	0	0.000409698	0	0
LGI4	163175	broad.mit.edu	37	19	35617247	35617247	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr19:35617247A>G	uc002nxx.2	-	8	1820	c.1226T>C	c.(1225-1227)GTC>GCC	p.V409A	LGI4_uc002nxy.1_Missense_Mutation_p.V237A|LGI4_uc002nxz.1_Missense_Mutation_p.V237A	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	409	EAR 3.					extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			TGTGGCATAGACATCCTCGGC	0.682000													14	18					0	0	0.000422831	0	0
ZNF546	339327	broad.mit.edu	37	19	40520846	40520846	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr19:40520846G>A	uc002oms.2	+	7	1925	c.1669G>A	c.(1669-1671)GAA>AAA	p.E557K	ZNF546_uc002omt.2_Missense_Mutation_p.E531K	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	557	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAATGTAAGGAATGTGGGAA	0.388000													40	31					0	0	0.00111076	0	0
EGLN2	112398	broad.mit.edu	37	19	41306603	41306603	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr19:41306603T>A	uc010ehd.2	+	8	1127	c.126T>A	c.(124-126)TGT>TGA	p.C42*	EGLN2_uc002opg.3_Nonsense_Mutation_p.C42*|EGLN2_uc002oph.2_Nonsense_Mutation_p.C42*|EGLN2_uc002opi.2_Nonsense_Mutation_p.C42*	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	42					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	ACCTGCCCTGTCCCCTGCTCC	0.652000													13	27					0	0	0.000219431	0	0
PUM2	23369	broad.mit.edu	37	2	20518349	20518349	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:20518349C>T	uc002rds.1	-	2	132	c.109G>A	c.(109-111)GGC>AGC	p.G37S	PUM2_uc002rdt.1_Missense_Mutation_p.G37S|PUM2_uc002rdr.2_5'UTR|PUM2_uc010yjy.1_Missense_Mutation_p.G37S|PUM2_uc002rdu.1_Missense_Mutation_p.G37S|PUM2_uc010yjz.1_Intron	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	37	Interaction with SNAPIN.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAAATATGCCTTTTTGTCCA	0.338000													25	41					0	0	0.000339439	0	0
UNC50	25972	broad.mit.edu	37	2	99232895	99232895	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:99232895A>T	uc002szc.3	+	5	694	c.542A>T	c.(541-543)CAT>CTT	p.H181L	C2orf64_uc002sza.2_Intron|UNC50_uc002szb.2_Missense_Mutation_p.H181L|UNC50_uc010yvl.1_Missense_Mutation_p.H198L	NM_014044	NP_054763	Q53HI1	UNC50_HUMAN	unc-50 homolog	181	Helical; (Potential).				protein transport	Golgi membrane|integral to membrane|nuclear inner membrane	RNA binding				0						CTTCTGGCAGATGTTATCCTG	0.373000													42	56					0	0	0.00148497	0	0
TTN	7273	broad.mit.edu	37	2	179611166	179611166	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:179611166C>T	uc002unb.2	-	46	16185	c.15961G>A	c.(15961-15963)GTT>ATT	p.V5321I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTCTTTAACGTCTTTTTCA	0.363000													10	25					0	0	0.000442599	0	0
ANKRD44	91526	broad.mit.edu	37	2	197986231	197986231	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:197986231T>C	uc002uuc.2	-	8	898	c.731A>G	c.(730-732)CAC>CGC	p.H244R	ANKRD44_uc002utz.3_5'UTR|ANKRD44_uc002uua.1_Missense_Mutation_p.H219R|ANKRD44_uc002uub.2_Missense_Mutation_p.H244R|ANKRD44_uc010zgw.1_Missense_Mutation_p.H172R	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	244	ANK 8.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			GCAGGCGATGTGAAGCGCTGT	0.433000													14	23					0	0	0.000566183	0	0
FZD5	7855	broad.mit.edu	37	2	208632800	208632800	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:208632800A>G	uc002vcj.2	-	2	1074	c.664T>C	c.(664-666)TGC>CGC	p.C222R		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	222	Extracellular (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		GGCTGGTAGCAGGGTACCGCG	0.632000													10	9					0	0	0.000442599	0	0
ZNF142	7701	broad.mit.edu	37	2	219503380	219503380	+	Silent	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr2:219503380G>T	uc002vin.2	-	10	5182	c.4746C>A	c.(4744-4746)ACC>ACA	p.T1582T	ZNF142_uc002vil.2_Silent_p.T1543T|ZNF142_uc010fvt.2_Silent_p.T1419T|ZNF142_uc002vim.2_Silent_p.T1419T	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1582	C2H2-type 29.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TGCGAAGGTGGGTGCGCAGCA	0.612000													9	35					2.17888e-05	0.000400336	0.000442599	1	0
SLC24A3	57419	broad.mit.edu	37	20	19665982	19665982	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr20:19665982C>T	uc002wrl.2	+	12	1498	c.1301C>T	c.(1300-1302)CCG>CTG	p.P434L		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	434	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						gatgaagGACCGTACACACCA	0.348000													36	48					0	0	0.000953801	0	0
PCIF1	63935	broad.mit.edu	37	20	44574469	44574469	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr20:44574469A>C	uc002xqs.2	+	12	1602	c.1288A>C	c.(1288-1290)ATC>CTC	p.I430L	PCIF1_uc002xqt.2_Missense_Mutation_p.I10L|PCIF1_uc002xqu.2_5'Flank	NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	430						nucleus				skin(1)	1						CGTGGTCTGCATCCGGTATAA	0.602000													41	78					0	0	0.000781405	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47641990	47641990	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr20:47641990C>T	uc002xtx.3	+	36	5048	c.4896C>T	c.(4894-4896)TAC>TAT	p.Y1632Y	ARFGEF2_uc010zyf.1_Silent_p.Y925Y	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1632					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			ACTCCAATTACGAGCAGCGGA	0.473000													20	29					0	0	0.00188189	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978008	45978008	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr21:45978008G>A	uc002zfj.1	-	1	636	c.591C>T	c.(589-591)CTC>CTT	p.L197L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	197	18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GGCGGCAGAGGAGGGACACGC	0.701000													12	11					0	0	0.000308642	0	0
GSTT1	2952	broad.mit.edu	37	22	24376512	24376512	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr22:24376512C>T	uc002zze.3	-	5	687	c.634G>A	c.(634-636)GAG>AAG	p.E212K	GSTT1_uc002zzf.3_RNA|GSTT1_uc010gug.2_RNA|GSTT1_uc011ajl.1_Missense_Mutation_p.E94K|GSTT1_uc010guh.2_RNA	NM_000853	NP_000844	P30711	GSTT1_HUMAN	glutathione S-transferase theta 1	212	GST C-terminal.				glutathione metabolic process	cytosol|soluble fraction	glutathione peroxidase activity|glutathione transferase activity			ovary(1)	1					Glutathione(DB00143)	AGAATGACCTCATGGGCCTCC	0.632000									Myelodysplasia_and_Acute_Myeloid_Leukemia_(AML)_Familial				6	65					0	0	8.12818e-05	0	0
FBXW12	285231	broad.mit.edu	37	3	48436087	48436087	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:48436087A>G	uc003csr.2	+	11	1544	c.1358A>G	c.(1357-1359)GAC>GGC	p.D453G	FBXW12_uc010hjv.2_Missense_Mutation_p.D434G|FBXW12_uc003css.2_Missense_Mutation_p.D383G|FBXW12_uc010hjw.2_Missense_Mutation_p.D352G	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	453											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAAGTAAGTGACTCCAGCATT	0.358000													47	110					0	0	0.000781405	0	0
KIAA1407	57577	broad.mit.edu	37	3	113721375	113721375	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:113721375C>A	uc003eax.2	-	12	2136	c.1989G>T	c.(1987-1989)GAG>GAT	p.E663D	KIAA1407_uc011bin.1_RNA	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	663	Potential.									ovary(2)	2						GAATTGCTCTCTCTTCCATAG	0.318000													27	60					4.15321e-07	7.72396e-06	0.00178596	1	0
POLQ	10721	broad.mit.edu	37	3	121217327	121217327	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:121217327T>G	uc003eee.3	-	13	2279	c.2150A>C	c.(2149-2151)AAA>ACA	p.K717T		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	717					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CGTTTACCTTTTATGGATGGC	0.358000								DNA_polymerases_(catalytic_subunits)					99	78					0	0	0.000781405	0	0
SEC62	7095	broad.mit.edu	37	3	169706125	169706125	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:169706125C>T	uc003fgg.2	+	7	739	c.708C>T	c.(706-708)GCC>GCT	p.A236A	SEC62_uc003fgh.2_Silent_p.A236A	NM_003262	NP_003253	Q99442	SEC62_HUMAN	translocation protein 1	236	Helical; (Potential).				cotranslational protein targeting to membrane|transmembrane transport	aggresome|endoplasmic reticulum membrane|integral to membrane|intermediate filament cytoskeleton|rough endoplasmic reticulum	protein transporter activity|receptor activity			ovary(1)	1						GTTTTGTAGCCAGTATTCTTC	0.433000													42	110					0	0	0.000509022	0	0
ACAP2	23527	broad.mit.edu	37	3	195006526	195006526	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:195006526T>C	uc003fun.3	-	22	2476	c.2235A>G	c.(2233-2235)CCA>CCG	p.P745P		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	745					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						AATATTGACCTGGCTGTCCAT	0.313000													7	43					0	0	0.000442599	0	0
LMLN	89782	broad.mit.edu	37	3	197687145	197687145	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:197687145G>A	uc011buo.1	+	1	75	c.53G>A	c.(52-54)GGT>GAT	p.G18D	IQCG_uc003fyp.2_5'Flank|LMLN_uc003fyt.2_Silent_p.G6G|LMLN_uc010iar.2_Missense_Mutation_p.G18D|LMLN_uc010ias.2_Silent_p.G6G|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	18					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		GGAGGAGTGGGTTACTCGGGC	0.627000													10	42					0	0	0.000673444	0	0
CWH43	80157	broad.mit.edu	37	4	49040168	49040168	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr4:49040168C>G	uc003gyv.2	+	13	1956	c.1774C>G	c.(1774-1776)CTA>GTA	p.L592V	CWH43_uc011bzl.1_Missense_Mutation_p.L565V	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	592					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CAGAGATTATCTACAGCTCAC	0.323000													5	229					0	0	0.000602214	0	0
TET2	54790	broad.mit.edu	37	4	106157461	106157461	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr4:106157461G>T	uc003hxk.2	+	3	2748	c.2362G>T	c.(2362-2364)GAA>TAA	p.E788*	TET2_uc011cez.1_Nonsense_Mutation_p.E809*|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Nonsense_Mutation_p.E788*|TET2_uc003hxi.1_Nonsense_Mutation_p.E788*	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	788	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TTTTCATGGTGAAAATCAGTA	0.393000			Mis N|F		MDS								22	21					1.55795e-14	2.96983e-13	0.00188189	1	0
TRPC3	7222	broad.mit.edu	37	4	122853525	122853525	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr4:122853525G>A	uc003ieg.2	-	2	962	c.888C>T	c.(886-888)AGC>AGT	p.S296S	TRPC3_uc010inr.2_Silent_p.S223S|TRPC3_uc003ief.2_Silent_p.S223S|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	211	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GGTAAGCCGGGCTGGCCAGCC	0.587000													10	18					0	0	0.000442599	0	0
FAT1	2195	broad.mit.edu	37	4	187530418	187530418	+	Silent	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr4:187530418T>A	uc003izf.2	-	16	10313	c.10125A>T	c.(10123-10125)ATA>ATT	p.I3375I		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3375	Extracellular (Potential).|Cadherin 31.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GGTTGCCATCTATAATTGAGT	0.478000										HNSCC(5;0.00058)			30	41					0	0	0.00127121	0	0
AGGF1	55109	broad.mit.edu	37	5	76344781	76344781	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr5:76344781C>A	uc003ket.2	+	8	1694	c.1334C>A	c.(1333-1335)ACT>AAT	p.T445N		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	445	FHA.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		ATGGAACATACTCTCCGAATC	0.294000													66	75					1.2582e-26	2.45995e-25	0.000781405	1	0
PCDH12	51294	broad.mit.edu	37	5	141336615	141336615	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr5:141336615C>T	uc003llx.2	-	1	2013	c.802G>A	c.(802-804)GCC>ACC	p.A268T		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	268	Extracellular (Potential).|Cadherin 3.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTCTGTGGCGGTCAGTTTT	0.527000													34	54					0	0	0.000409698	0	0
AGXT2L2	85007	broad.mit.edu	37	5	177642285	177642285	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr5:177642285C>T	uc003miz.2	-	9	1326	c.1074G>A	c.(1072-1074)GGG>GGA	p.G358G	AGXT2L2_uc003miy.2_Silent_p.G83G|AGXT2L2_uc003mjc.2_Silent_p.G317G|AGXT2L2_uc003mja.2_RNA|AGXT2L2_uc003mjb.2_Silent_p.G83G|AGXT2L2_uc003mjd.1_Silent_p.G216G	NM_153373	NP_699204	Q8IUZ5	AT2L2_HUMAN	alanine-glyoxylate aminotransferase 2-like 2	358						mitochondrion	pyridoxal phosphate binding|transaminase activity			pancreas(1)	1	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.181)|all cancers(165;0.235)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	ACCTGACATCCCCGACGATGG	0.463000													22	21					0	0	0.000375601	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166694	180166694	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr5:180166694C>T	uc003mmf.1	-	1	365	c.365G>A	c.(364-366)CGC>CAC	p.R122H		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCAGCATAGCGGTCAAAGGC	0.607000													11	21					0	0	0.000673444	0	0
MRS2	57380	broad.mit.edu	37	6	24418322	24418322	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr6:24418322A>T	uc003neb.2	+	8	969	c.847A>T	c.(847-849)AGT>TGT	p.S283C	MRS2_uc003nea.2_Missense_Mutation_p.S283C|MRS2_uc011djl.1_Missense_Mutation_p.S286C|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.S233C|MRS2_uc003nec.2_Missense_Mutation_p.S160C	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	283	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						TGAAAAGAGCAGTGCTGGGAT	0.388000													37	45					0	0	0.000953801	0	0
KCTD20	222658	broad.mit.edu	37	6	36454734	36454734	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr6:36454734C>T	uc003ome.2	+	8	1433	c.1042C>T	c.(1042-1044)CGC>TGC	p.R348C	KCTD20_uc011dtm.1_Missense_Mutation_p.R203C|KCTD20_uc011dtn.1_Missense_Mutation_p.R102C|KCTD20_uc010jwk.2_Missense_Mutation_p.R182C|KCTD20_uc011dto.1_Missense_Mutation_p.R102C	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	348						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						TTATGTACAACGCCCCTTCAT	0.463000													41	67					0	0	0.00148497	0	0
ULBP1	80329	broad.mit.edu	37	6	150289835	150289835	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr6:150289835C>A	uc003qnp.2	+	2	221	c.178C>A	c.(178-180)CCT>ACT	p.P60T		NM_025218	NP_079494	Q9BZM6	N2DL1_HUMAN	UL16 binding protein 1 precursor	60	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|endoplasmic reticulum|MHC class I protein complex	MHC class I receptor activity			pancreas(1)	1		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.14e-11)		GGATGAAAGGCCTTTTCTTCA	0.453000													74	86					7.81431e-29	1.568e-27	0.000781405	1	0
MLLT4	4301	broad.mit.edu	37	6	168344092	168344092	+	Missense_Mutation	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr6:168344092T>A	uc003qwd.2	+	24	3294	c.3152T>A	c.(3151-3153)CTA>CAA	p.L1051Q	MLLT4_uc003qwb.1_Missense_Mutation_p.L1036Q|MLLT4_uc003qwc.1_Missense_Mutation_p.L1052Q|MLLT4_uc003qwg.1_Missense_Mutation_p.L361Q	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1052	PDZ.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GATGGACGTCTAGCTGCAGGT	0.458000			T	MLL	AL								83	107					0	0	0.000781405	0	0
ACTB	60	broad.mit.edu	37	7	5568236	5568236	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr7:5568236T>C	uc003sos.3	-	3	514	c.478A>G	c.(478-480)ACC>GCC	p.T160A	ACTB_uc003sor.3_Missense_Mutation_p.T38A|ACTB_uc003sot.3_Missense_Mutation_p.T160A|ACTB_uc003soq.3_Missense_Mutation_p.T38A|ACTB_uc010ksy.2_Missense_Mutation_p.T38A	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	160					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		ACAGTGTGGGTGACCCCGTCA	0.607000													82	45					0	0	0.000781405	0	0
C7orf26	79034	broad.mit.edu	37	7	6639834	6639834	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr7:6639834T>G	uc003sqo.1	+	4	955	c.955T>G	c.(955-957)TTC>GTC	p.F319V	C7orf26_uc003sqp.1_Missense_Mutation_p.F222V|C7orf26_uc003sqq.1_Missense_Mutation_p.F120V	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	319										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		GCTGATCCTCTTCGACCACAT	0.582000													23	11					0	0	0.00047179	0	0
ASB4	51666	broad.mit.edu	37	7	95125264	95125264	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr7:95125264G>A	uc011kij.1	+	2	382	c.382G>A	c.(382-384)GAT>AAT	p.D128N	ASB4_uc003unx.2_Missense_Mutation_p.D128N	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	128	ANK 2.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			GATCCTCTGTGATCGTGGGGC	0.458000													21	68					0	0	0.00152264	0	0
NRCAM	4897	broad.mit.edu	37	7	107808822	107808822	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr7:107808822G>A	uc003vfb.2	-	29	3684	c.3213C>T	c.(3211-3213)AGC>AGT	p.S1071S	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1071	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						CAGTAAGATTGCTGATCCTGG	0.363000													24	47					0	0	0.00047179	0	0
CHD7	55636	broad.mit.edu	37	8	61654762	61654762	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr8:61654762T>C	uc003xue.2	+	2	1248	c.771T>C	c.(769-771)CAT>CAC	p.H257H		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	257					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AGCAGTTCCATCACCACCCCT	0.582000													71	106					0	0	0.000781405	0	0
PTPRD	5789	broad.mit.edu	37	9	8460558	8460558	+	Missense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:8460558G>T	uc003zkk.2	-	32	4439	c.3728C>A	c.(3727-3729)ACC>AAC	p.T1243N	PTPRD_uc003zkp.2_Missense_Mutation_p.T832N|PTPRD_uc003zkq.2_Missense_Mutation_p.T832N|PTPRD_uc003zkr.2_Missense_Mutation_p.T827N|PTPRD_uc003zks.2_Missense_Mutation_p.T822N|PTPRD_uc003zkl.2_Missense_Mutation_p.T1234N|PTPRD_uc003zkm.2_Missense_Mutation_p.T1230N|PTPRD_uc003zkn.2_Missense_Mutation_p.T832N|PTPRD_uc003zko.2_Missense_Mutation_p.T829N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1243	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTAAGGGCTGGTTGCATACAT	0.433000										TSP Lung(15;0.13)			30	42					3.86903e-22	7.46869e-21	0.000491102	1	0
GTF3C5	9328	broad.mit.edu	37	9	135917679	135917680	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:135917679_135917680TT>AA	uc004cci.3	+	2	696_697	c.359_360TT>AA	c.(358-360)ATT>AAA	p.I120K	GTF3C5_uc010mzz.2_Intron|GTF3C5_uc004ccj.3_Missense_Mutation_p.I120K	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	120						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		ATCTCCACCATTTACAAATTTC	0.371000													31	52					0	0	6.4e-05	0	0
CEL	1056	broad.mit.edu	37	9	135941956	135941956	+	Missense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:135941956G>T	uc010naa.1	+	5	603	c.587G>T	c.(586-588)TGG>TTG	p.W196L		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	193					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GCCATTGCTTGGGTGAAGAGG	0.642000													9	118					0.000274275	0.00492082	0.000274275	1	0
CACNA1B	774	broad.mit.edu	37	9	140943670	140943670	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:140943670T>C	uc004cog.2	+	24	3758	c.3613T>C	c.(3613-3615)TTG>CTG	p.L1205L	CACNA1B_uc011mfd.1_Silent_p.L735L|CACNA1B_uc004coi.2_Silent_p.L415L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1205	Helical; Name=S2 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GATGATCGACTTGGGACTGCT	0.418000													26	40					0	0	0.000878237	0	0
Unknown	0	broad.mit.edu	37	X	155255024	155255024	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chrX:155255024C>T	uc004fnx.3	+	9	1234	c.780C>T	c.(778-780)GAC>GAT	p.D260D		NM_182905	NP_878908			WAS protein family homolog 1																		AGGACGAGGACGACTGGGAAT	0.647000													7	5					0	0	0.000274275	0	0
AGL	178	broad.mit.edu	37	1	100346675	100346675	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr1:100346675C>G	uc001dsi.1	+	15	2343	c.1943C>G	c.(1942-1944)TCT>TGT	p.S648C	AGL_uc001dsj.1_Missense_Mutation_p.S648C|AGL_uc001dsk.1_Missense_Mutation_p.S648C|AGL_uc001dsl.1_Missense_Mutation_p.S648C|AGL_uc001dsm.1_Missense_Mutation_p.S632C|AGL_uc001dsn.1_Missense_Mutation_p.S631C	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	648	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		ACAATTGTTTCTATGGCATGT	0.368000													38	41					0	0	0.00148497	0	0
TMEM79	84283	broad.mit.edu	37	1	156256105	156256105	+	Missense_Mutation	SNP	G	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr1:156256105G>C	uc010phi.1	+	3	1008	c.812G>C	c.(811-813)GGG>GCG	p.G271A	TMEM79_uc001fod.2_Missense_Mutation_p.G112A|TMEM79_uc009wrw.2_Missense_Mutation_p.G271A	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	271						integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					CGGCCCTTTGGGGAGCCACGG	0.577000													3	84					0	0	6.4e-05	0	0
BAT2L2	23215	broad.mit.edu	37	1	171535917	171535917	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr1:171535917G>A	uc010pmg.1	+	22	6753	c.6487G>A	c.(6487-6489)GAA>AAA	p.E2163K	BAT2L2_uc010pmh.1_Missense_Mutation_p.E1140K|BAT2L2_uc010pmi.1_5'UTR	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2163							protein C-terminus binding				0						AGCAGTCTCAGAAATGTCTAC	0.448000													10	24					0	0	0.000673444	0	0
AGT	183	broad.mit.edu	37	1	230841797	230841797	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr1:230841797A>T	uc001hty.3	-	3	1514	c.1006T>A	c.(1006-1008)TTC>ATC	p.F336I	AGT_uc009xfe.2_Missense_Mutation_p.F336I|AGT_uc009xff.2_Missense_Mutation_p.F308I	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	336					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	CTCTCAGTGAAGGGCACTTGA	0.562000													45	61					0	0	0.000781405	0	0
DIP2C	22982	broad.mit.edu	37	10	375449	375449	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:375449A>T	uc001ifp.2	-	30	3767	c.3677T>A	c.(3676-3678)GTC>GAC	p.V1226D		NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1226						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CGTGTCTCGGACTTTGTACTG	0.577000													21	27					0	0	0.00188189	0	0
ZEB1	6935	broad.mit.edu	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	T	T	rs35653460		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:31812949G>T	uc001ivs.3	+	8	2753	c.2690G>T	c.(2689-2691)CGG>CTG	p.R897L	ZEB1_uc001ivr.3_Missense_Mutation_p.R679L|ZEB1_uc010qee.1_Missense_Mutation_p.R679L|ZEB1_uc010qef.1_Missense_Mutation_p.R679L|ZEB1_uc009xlk.1_Missense_Mutation_p.R679L|ZEB1_uc001ivt.3_Missense_Mutation_p.R679L|ZEB1_uc001ivu.3_Missense_Mutation_p.R898L|ZEB1_uc001ivv.3_Missense_Mutation_p.R877L|ZEB1_uc010qeh.1_Missense_Mutation_p.R830L|ZEB1_uc009xlp.2_Missense_Mutation_p.R881L	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	897					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAGAAAATGCGGAAGACAGAA	0.373000													47	78					4.10826e-27	9.23025e-26	0.000781405	1	0
SLK	9748	broad.mit.edu	37	10	105763115	105763115	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:105763115G>A	uc001kxo.1	+	9	2213	c.2179G>A	c.(2179-2181)GGT>AGT	p.G727S	SLK_uc001kxp.1_Missense_Mutation_p.G727S	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	727					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGAAGAAATAGGTTCTTTATC	0.393000													28	34					0	0	0.000878237	0	0
SEC23IP	11196	broad.mit.edu	37	10	121692658	121692658	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:121692658T>C	uc001leu.1	+	17	2972	c.2900T>C	c.(2899-2901)CTT>CCT	p.L967P	SEC23IP_uc010qtc.1_Missense_Mutation_p.L756P|SEC23IP_uc009xzk.1_RNA	NM_007190	NP_009121	Q9Y6Y8	S23IP_HUMAN	Sec23-interacting protein p125	967	DDHD.				Golgi organization|intracellular protein transport	endoplasmic reticulum|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment	metal ion binding			ovary(3)	3		Lung NSC(174;0.109)|all_lung(145;0.142)|all_neural(114;0.234)		all cancers(201;0.00515)		CTTTTCGCTCTTCAGAGTCAC	0.383000													52	66					0	0	0.000781405	0	0
ADAM12	8038	broad.mit.edu	37	10	127789653	127789653	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:127789653G>A	uc001ljk.2	-	9	1321	c.908C>T	c.(907-909)GCG>GTG	p.A303V	ADAM12_uc010qul.1_Missense_Mutation_p.A254V|ADAM12_uc001ljm.2_Missense_Mutation_p.A303V|ADAM12_uc001ljn.2_Missense_Mutation_p.A300V|ADAM12_uc001ljl.3_Missense_Mutation_p.A300V	NM_003474	NP_003465	O43184	ADA12_HUMAN	ADAM metallopeptidase domain 12 isoform 1	303	Extracellular (Potential).|Peptidase M12B.				cell adhesion|epidermal growth factor receptor signaling pathway|myoblast fusion|proteolysis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|protein binding|SH3 domain binding|zinc ion binding			breast(4)|ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	9		all_epithelial(44;7.06e-05)|all_lung(145;0.00563)|Lung NSC(174;0.00834)|Colorectal(57;0.102)|all_neural(114;0.107)|Breast(234;0.22)		COAD - Colon adenocarcinoma(40;0.141)|Colorectal(40;0.216)		GACAAGCTGCGCATTGTCATG	0.507000													5	46					0	0	0.00116845	0	0
DOCK1	1793	broad.mit.edu	37	10	128788791	128788791	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr10:128788791C>G	uc001ljt.2	+	6	461	c.397C>G	c.(397-399)CTT>GTT	p.L133V	DOCK1_uc010qun.1_Missense_Mutation_p.L133V	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	133					apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		ATCACAAATTCTTTCTGGAAC	0.393000													11	12					0	0	0.000673444	0	0
OR56A1	120796	broad.mit.edu	37	11	6048449	6048449	+	Silent	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr11:6048449A>G	uc010qzw.1	-	1	486	c.486T>C	c.(484-486)CTT>CTC	p.L162L		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	162	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGGTGCAGTAAGAAGCGCAT	0.498000													43	52					0	0	0.000781405	0	0
KIAA1826	84437	broad.mit.edu	37	11	105881299	105881299	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr11:105881299C>G	uc001piy.2	-	2	519	c.346G>C	c.(346-348)GGA>CGA	p.G116R	KIAA1826_uc001piz.2_Missense_Mutation_p.G116R	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	116						nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		TTTCGGAATCCAATCTTTTCA	0.443000													3	122					0	0	6.4e-05	0	0
KIAA0528	9847	broad.mit.edu	37	12	22623804	22623804	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr12:22623804C>T	uc001rfq.2	-	21	2628	c.2400G>A	c.(2398-2400)CAG>CAA	p.Q800Q	KIAA0528_uc010sir.1_Silent_p.Q615Q|KIAA0528_uc010sis.1_Silent_p.Q800Q|KIAA0528_uc010sit.1_Silent_p.Q802Q|KIAA0528_uc010siu.1_Silent_p.Q800Q|KIAA0528_uc001rfr.2_Silent_p.Q791Q	NM_014802	NP_055617	Q86YS7	K0528_HUMAN	hypothetical protein LOC9847	800							protein binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TTTGTAAAGCCTGATTTTTGT	0.343000													20	51					0	0	0.00188189	0	0
ITGB7	3695	broad.mit.edu	37	12	53586547	53586547	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr12:53586547T>C	uc009zmv.2	-	12	1945	c.1874A>G	c.(1873-1875)CAG>CGG	p.Q625R	ITGB7_uc001scc.2_Missense_Mutation_p.Q625R|ITGB7_uc010snz.1_Intron	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	625	Cysteine-rich tandem repeats.|Extracellular (Potential).|IV.				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						GTCCAAGCACTGGCAGCGGTT	0.597000													51	36					0	0	0.000781405	0	0
FSCB	84075	broad.mit.edu	37	14	44975261	44975261	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr14:44975261C>T	uc001wvn.2	-	1	1239	c.930G>A	c.(928-930)GCG>GCA	p.A310A		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	310						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CAGAATTCTCCGCAACTGCAG	0.527000													35	44					0	0	0.00058488	0	0
TDP1	55775	broad.mit.edu	37	14	90429932	90429932	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr14:90429932G>A	uc001xxy.2	+	3	773	c.474G>A	c.(472-474)CTG>CTA	p.L158L	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Silent_p.L158L|TDP1_uc010atn.2_Silent_p.L158L|TDP1_uc001xya.2_5'UTR|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Silent_p.L158L|TDP1_uc001xyc.1_Silent_p.L158L	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	158					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		GGGACATGCTGGATAAAGGGA	0.512000								Repair_of_DNA-protein_crosslinks					44	59					0	0	0.000589545	0	0
LRRC49	54839	broad.mit.edu	37	15	71341787	71341787	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr15:71341787G>A	uc002asw.2	+	16	2144	c.1897G>A	c.(1897-1899)GAA>AAA	p.E633K	LRRC49_uc002asu.2_Missense_Mutation_p.E623K|LRRC49_uc002asx.2_Missense_Mutation_p.E589K|LRRC49_uc010ukf.1_Missense_Mutation_p.E638K|LRRC49_uc002asy.2_Missense_Mutation_p.E339K|LRRC49_uc002asz.2_Missense_Mutation_p.E605K	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	633						cytoplasm|microtubule				ovary(1)	1						AACATATATAGAAGACCTTGT	0.333000													35	67					0	0	0.000491102	0	0
LRRC49	54839	broad.mit.edu	37	15	71341790	71341790	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr15:71341790G>A	uc002asw.2	+	16	2147	c.1900G>A	c.(1900-1902)GAC>AAC	p.D634N	LRRC49_uc002asu.2_Missense_Mutation_p.D624N|LRRC49_uc002asx.2_Missense_Mutation_p.D590N|LRRC49_uc010ukf.1_Missense_Mutation_p.D639N|LRRC49_uc002asy.2_Missense_Mutation_p.D340N|LRRC49_uc002asz.2_Missense_Mutation_p.D606N	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	634						cytoplasm|microtubule				ovary(1)	1						ATATATAGAAGACCTTGTGAA	0.333000													38	66					0	0	0.000814825	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85056021	85056021	+	RNA	SNP	T	C	C	rs1062001		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr15:85056021T>C	uc002bkm.2	-	6		c.539A>G				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GTAGCTGCTCTACCTTAGATG	0.502000													3	17					0	0	6.4e-05	0	0
SRRM2	23524	broad.mit.edu	37	16	2814253	2814253	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr16:2814253G>A	uc002crk.2	+	11	4273	c.3724G>A	c.(3724-3726)GTA>ATA	p.V1242I	SRRM2_uc002crj.1_Missense_Mutation_p.V1146I|SRRM2_uc002crl.1_Missense_Mutation_p.V1242I|SRRM2_uc010bsu.1_Missense_Mutation_p.V1146I	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1242	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AATGGAGGTGGTAGAGAAGTC	0.443000													61	196					0	0	0.000781405	0	0
SRCAP	10847	broad.mit.edu	37	16	30735227	30735227	+	Silent	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr16:30735227A>C	uc002dze.1	+	25	4867	c.4482A>C	c.(4480-4482)GCA>GCC	p.A1494A	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.A1289A|SRCAP_uc010bzz.1_Silent_p.A1064A	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1494	Pro-rich.			A -> Q (in Ref. 6; AAD39760).	interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCTCCTTGGCACCATCTGGTG	0.587000													4	136					0	0	8.12818e-05	0	0
C16orf86	388284	broad.mit.edu	37	16	67702137	67702137	+	Nonsense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr16:67702137C>G	uc002ety.2	+	4	745	c.588C>G	c.(586-588)TAC>TAG	p.Y196*	C16orf48_uc002etw.1_5'Flank|C16orf48_uc010cem.1_5'Flank|C16orf86_uc002etx.1_3'UTR|C16orf86_uc002etz.2_RNA	NM_001012984	NP_001013002	Q6ZW13	CP086_HUMAN	hypothetical protein LOC388284	196											0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		TGTACCAGTACGTCAACTATT	0.667000											OREG0023886	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	14					0	0	0.000566183	0	0
CPNE7	27132	broad.mit.edu	37	16	89662976	89662976	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr16:89662976C>A	uc002fnp.2	+	17	1979	c.1849C>A	c.(1849-1851)CCG>ACG	p.P617T	CPNE7_uc002fnq.2_Missense_Mutation_p.P542T	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	617					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		AGGCCTGCCCCCGAGAAGCCT	0.667000													8	81					0.000157383	0.00324135	0.000157383	1	0
SCARF1	8578	broad.mit.edu	37	17	1538231	1538231	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:1538231T>C	uc002fsz.1	-	11	2364	c.2314A>G	c.(2314-2316)AGA>GGA	p.R772G	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.R686G	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	772	Gly-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TCCTCTGGTCTGACTGCCATA	0.657000													44	33					0	0	0.000437636	0	0
CAMKK1	84254	broad.mit.edu	37	17	3788622	3788622	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:3788622C>G	uc002fwt.2	-	2	454	c.360G>C	c.(358-360)GAG>GAC	p.E120D	CAMKK1_uc002fwu.2_Missense_Mutation_p.E120D|CAMKK1_uc002fwv.2_Missense_Mutation_p.E120D	NM_172206	NP_757343	Q8N5S9	KKCC1_HUMAN	calcium/calmodulin-dependent protein kinase 1	120					synaptic transmission	cytosol|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1				LUAD - Lung adenocarcinoma(2;2.11e-05)|Lung(3;0.0176)		CCCCACCAACCTCTGCATCTG	0.488000													12	24					0	0	0.00185496	0	0
ZNF232	7775	broad.mit.edu	37	17	5009512	5009512	+	Silent	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:5009512A>G	uc002gas.2	-	5	1615	c.861T>C	c.(859-861)TAT>TAC	p.Y287Y	ZNF232_uc002gar.1_Silent_p.Y305Y|ZNF232_uc002gat.2_Silent_p.Y314Y	NM_014519	NP_055334	Q9UNY5	ZN232_HUMAN	zinc finger protein 232	287	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GATGTGAGTTATAAATGAAGG	0.428000													42	124					0	0	0.00195071	0	0
POLDIP2	26073	broad.mit.edu	37	17	26684350	26684351	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:26684350_26684351GC>AT	uc002haz.2	-	4	256_257	c.124_125GC>AT	c.(124-126)GCG>ATG	p.A42M	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2	42						mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CGTGGTCGACGCTGGCGAGAAG	0.738000													14	10					0	0	6.4e-05	0	0
SLC13A2	9058	broad.mit.edu	37	17	26818545	26818545	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:26818545G>A	uc002hbh.2	+	5	732	c.665G>A	c.(664-666)AGC>AAC	p.S222N	SLC13A2_uc010wal.1_Missense_Mutation_p.S179N|SLC13A2_uc010wam.1_Missense_Mutation_p.S178N|SLC13A2_uc010wan.1_Missense_Mutation_p.S271N|SLC13A2_uc010wao.1_Missense_Mutation_p.S179N|SLC13A2_uc002hbi.2_Missense_Mutation_p.S151N	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	222	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CAGTGCATGAGCCTGTGCGTG	0.617000													40	89					0	0	0.000437636	0	0
SPAG5	10615	broad.mit.edu	37	17	26919846	26919846	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:26919846T>C	uc002hbq.2	-	3	508	c.416A>G	c.(415-417)CAG>CGG	p.Q139R	SGK494_uc010waq.1_Intron	NM_006461	NP_006452	Q96R06	SPAG5_HUMAN	sperm associated antigen 5	139					cell division|mitosis|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytoplasm|spindle pole	protein binding			central_nervous_system(1)	1	Lung NSC(42;0.00431)					GTCTTGTTGCTGCCCCAGTGG	0.453000													121	85					0	0	0.000781405	0	0
UNC13D	201294	broad.mit.edu	37	17	73831766	73831766	+	Silent	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:73831766G>T	uc002jpp.2	-	19	2069	c.1689C>A	c.(1687-1689)CTC>CTA	p.L563L	UNC13D_uc010wsk.1_Silent_p.L563L|UNC13D_uc002jpq.1_Silent_p.L213L	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	563	MHD1.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGAGCTCCTTGAGGCTGATGT	0.637000									Familial_Hemophagocytic_Lymphohistiocytosis				21	43					3.51602e-12	7.50952e-11	0.00121646	1	0
CTAGE1	64693	broad.mit.edu	37	18	19997258	19997258	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr18:19997258G>A	uc002ktv.1	-	1	621	c.517C>T	c.(517-519)CGG>TGG	p.R173W		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	173	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					ATCTCCAACCGTTCTTCATTC	0.388000													59	77					0	0	0.000781405	0	0
ZNF20	7568	broad.mit.edu	37	19	12246707	12246707	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr19:12246707A>C	uc002mtf.1	-	2	159	c.16T>G	c.(16-18)TCA>GCA	p.S6A	ZNF20_uc002mte.1_Translation_Start_Site|ZNF20_uc002mtg.1_Missense_Mutation_p.S6A	NM_021143	NP_066966	P17024	ZNF20_HUMAN	zinc finger protein 20	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGGCCACTGAATCCTGAAAC	0.468000													32	38					0	0	0.000409698	0	0
LGI4	163175	broad.mit.edu	37	19	35617247	35617247	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr19:35617247A>G	uc002nxx.2	-	8	1820	c.1226T>C	c.(1225-1227)GTC>GCC	p.V409A	LGI4_uc002nxy.1_Missense_Mutation_p.V237A|LGI4_uc002nxz.1_Missense_Mutation_p.V237A	NM_139284	NP_644813	Q8N135	LGI4_HUMAN	leucine-rich repeat LGI family, member 4	409	EAR 3.					extracellular region				pancreas(1)	1	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.54e-20)|OV - Ovarian serous cystadenocarcinoma(14;1.33e-18)|all cancers(14;4.27e-17)|LUSC - Lung squamous cell carcinoma(66;0.0849)			TGTGGCATAGACATCCTCGGC	0.682000													14	18					0	0	0.000422831	0	0
ZNF546	339327	broad.mit.edu	37	19	40520846	40520846	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr19:40520846G>A	uc002oms.2	+	7	1925	c.1669G>A	c.(1669-1671)GAA>AAA	p.E557K	ZNF546_uc002omt.2_Missense_Mutation_p.E531K	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	557	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAATGTAAGGAATGTGGGAA	0.388000													40	31					0	0	0.00111076	0	0
EGLN2	112398	broad.mit.edu	37	19	41306603	41306603	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr19:41306603T>A	uc010ehd.2	+	8	1127	c.126T>A	c.(124-126)TGT>TGA	p.C42*	EGLN2_uc002opg.3_Nonsense_Mutation_p.C42*|EGLN2_uc002oph.2_Nonsense_Mutation_p.C42*|EGLN2_uc002opi.2_Nonsense_Mutation_p.C42*	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	42					cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	ACCTGCCCTGTCCCCTGCTCC	0.652000													13	27					0	0	0.000219431	0	0
PUM2	23369	broad.mit.edu	37	2	20518349	20518349	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:20518349C>T	uc002rds.1	-	2	132	c.109G>A	c.(109-111)GGC>AGC	p.G37S	PUM2_uc002rdt.1_Missense_Mutation_p.G37S|PUM2_uc002rdr.2_5'UTR|PUM2_uc010yjy.1_Missense_Mutation_p.G37S|PUM2_uc002rdu.1_Missense_Mutation_p.G37S|PUM2_uc010yjz.1_Intron	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	37	Interaction with SNAPIN.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAAATATGCCTTTTTGTCCA	0.338000													25	41					0	0	0.000339439	0	0
UNC50	25972	broad.mit.edu	37	2	99232895	99232895	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:99232895A>T	uc002szc.3	+	5	694	c.542A>T	c.(541-543)CAT>CTT	p.H181L	C2orf64_uc002sza.2_Intron|UNC50_uc002szb.2_Missense_Mutation_p.H181L|UNC50_uc010yvl.1_Missense_Mutation_p.H198L	NM_014044	NP_054763	Q53HI1	UNC50_HUMAN	unc-50 homolog	181	Helical; (Potential).				protein transport	Golgi membrane|integral to membrane|nuclear inner membrane	RNA binding				0						CTTCTGGCAGATGTTATCCTG	0.373000													42	56					0	0	0.00148497	0	0
TTN	7273	broad.mit.edu	37	2	179611166	179611166	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:179611166C>T	uc002unb.2	-	46	16185	c.15961G>A	c.(15961-15963)GTT>ATT	p.V5321I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTCTTTAACGTCTTTTTCA	0.363000													10	25					0	0	0.000442599	0	0
ANKRD44	91526	broad.mit.edu	37	2	197986231	197986231	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:197986231T>C	uc002uuc.2	-	8	898	c.731A>G	c.(730-732)CAC>CGC	p.H244R	ANKRD44_uc002utz.3_5'UTR|ANKRD44_uc002uua.1_Missense_Mutation_p.H219R|ANKRD44_uc002uub.2_Missense_Mutation_p.H244R|ANKRD44_uc010zgw.1_Missense_Mutation_p.H172R	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	244	ANK 8.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			GCAGGCGATGTGAAGCGCTGT	0.433000													14	23					0	0	0.000566183	0	0
FZD5	7855	broad.mit.edu	37	2	208632800	208632800	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:208632800A>G	uc002vcj.2	-	2	1074	c.664T>C	c.(664-666)TGC>CGC	p.C222R		NM_003468	NP_003459	Q13467	FZD5_HUMAN	frizzled 5 precursor	222	Extracellular (Potential).				angiogenesis|anterior/posterior axis specification, embryo|axonogenesis|brain development|canonical Wnt receptor signaling pathway|cellular response to molecule of bacterial origin|embryonic camera-type eye development|gonad development|labyrinthine layer blood vessel development|positive regulation of interferon-gamma production|positive regulation of transcription from RNA polymerase II promoter|post-embryonic camera-type eye development|Spemann organizer formation|T cell differentiation in thymus|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell projection|cell surface|Golgi membrane|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|protein kinase binding|Wnt-protein binding			ovary(2)|lung(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.13)|Lung(261;0.134)		GGCTGGTAGCAGGGTACCGCG	0.632000													10	9					0	0	0.000442599	0	0
ZNF142	7701	broad.mit.edu	37	2	219503380	219503380	+	Silent	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr2:219503380G>T	uc002vin.2	-	10	5182	c.4746C>A	c.(4744-4746)ACC>ACA	p.T1582T	ZNF142_uc002vil.2_Silent_p.T1543T|ZNF142_uc010fvt.2_Silent_p.T1419T|ZNF142_uc002vim.2_Silent_p.T1419T	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1582	C2H2-type 29.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		TGCGAAGGTGGGTGCGCAGCA	0.612000													9	35					2.17888e-05	0.000454152	0.000442599	1	0
SLC24A3	57419	broad.mit.edu	37	20	19665982	19665982	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr20:19665982C>T	uc002wrl.2	+	12	1498	c.1301C>T	c.(1300-1302)CCG>CTG	p.P434L		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	434	Cytoplasmic (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						gatgaagGACCGTACACACCA	0.348000													36	48					0	0	0.000953801	0	0
PCIF1	63935	broad.mit.edu	37	20	44574469	44574469	+	Missense_Mutation	SNP	A	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr20:44574469A>C	uc002xqs.2	+	12	1602	c.1288A>C	c.(1288-1290)ATC>CTC	p.I430L	PCIF1_uc002xqt.2_Missense_Mutation_p.I10L|PCIF1_uc002xqu.2_5'Flank	NM_022104	NP_071387	Q9H4Z3	PCIF1_HUMAN	phosphorylated CTD interacting factor 1	430						nucleus				skin(1)	1						CGTGGTCTGCATCCGGTATAA	0.602000													41	78					0	0	0.000781405	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47641990	47641990	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr20:47641990C>T	uc002xtx.3	+	36	5048	c.4896C>T	c.(4894-4896)TAC>TAT	p.Y1632Y	ARFGEF2_uc010zyf.1_Silent_p.Y925Y	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1632					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			ACTCCAATTACGAGCAGCGGA	0.473000													20	29					0	0	0.00188189	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978008	45978008	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr21:45978008G>A	uc002zfj.1	-	1	636	c.591C>T	c.(589-591)CTC>CTT	p.L197L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	197	18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GGCGGCAGAGGAGGGACACGC	0.701000													12	11					0	0	0.000308642	0	0
GSTT1	2952	broad.mit.edu	37	22	24376512	24376512	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr22:24376512C>T	uc002zze.3	-	5	687	c.634G>A	c.(634-636)GAG>AAG	p.E212K	GSTT1_uc002zzf.3_RNA|GSTT1_uc010gug.2_RNA|GSTT1_uc011ajl.1_Missense_Mutation_p.E94K|GSTT1_uc010guh.2_RNA	NM_000853	NP_000844	P30711	GSTT1_HUMAN	glutathione S-transferase theta 1	212	GST C-terminal.				glutathione metabolic process	cytosol|soluble fraction	glutathione peroxidase activity|glutathione transferase activity			ovary(1)	1					Glutathione(DB00143)	AGAATGACCTCATGGGCCTCC	0.632000									Myelodysplasia_and_Acute_Myeloid_Leukemia_(AML)_Familial				6	65					0	0	8.12818e-05	0	0
FBXW12	285231	broad.mit.edu	37	3	48436087	48436087	+	Missense_Mutation	SNP	A	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:48436087A>G	uc003csr.2	+	11	1544	c.1358A>G	c.(1357-1359)GAC>GGC	p.D453G	FBXW12_uc010hjv.2_Missense_Mutation_p.D434G|FBXW12_uc003css.2_Missense_Mutation_p.D383G|FBXW12_uc010hjw.2_Missense_Mutation_p.D352G	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	453											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AAAGTAAGTGACTCCAGCATT	0.358000													47	110					0	0	0.000781405	0	0
KIAA1407	57577	broad.mit.edu	37	3	113721375	113721375	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:113721375C>A	uc003eax.2	-	12	2136	c.1989G>T	c.(1987-1989)GAG>GAT	p.E663D	KIAA1407_uc011bin.1_RNA	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	663	Potential.									ovary(2)	2						GAATTGCTCTCTCTTCCATAG	0.318000													27	60					4.15321e-07	8.76226e-06	0.00178596	1	0
POLQ	10721	broad.mit.edu	37	3	121217327	121217327	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:121217327T>G	uc003eee.3	-	13	2279	c.2150A>C	c.(2149-2151)AAA>ACA	p.K717T		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	717					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CGTTTACCTTTTATGGATGGC	0.358000								DNA_polymerases_(catalytic_subunits)					99	78					0	0	0.000781405	0	0
SEC62	7095	broad.mit.edu	37	3	169706125	169706125	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:169706125C>T	uc003fgg.2	+	7	739	c.708C>T	c.(706-708)GCC>GCT	p.A236A	SEC62_uc003fgh.2_Silent_p.A236A	NM_003262	NP_003253	Q99442	SEC62_HUMAN	translocation protein 1	236	Helical; (Potential).				cotranslational protein targeting to membrane|transmembrane transport	aggresome|endoplasmic reticulum membrane|integral to membrane|intermediate filament cytoskeleton|rough endoplasmic reticulum	protein transporter activity|receptor activity			ovary(1)	1						GTTTTGTAGCCAGTATTCTTC	0.433000													42	110					0	0	0.000509022	0	0
ACAP2	23527	broad.mit.edu	37	3	195006526	195006526	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:195006526T>C	uc003fun.3	-	22	2476	c.2235A>G	c.(2233-2235)CCA>CCG	p.P745P		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	745					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						AATATTGACCTGGCTGTCCAT	0.313000													7	43					0	0	0.000442599	0	0
LMLN	89782	broad.mit.edu	37	3	197687145	197687145	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr3:197687145G>A	uc011buo.1	+	1	75	c.53G>A	c.(52-54)GGT>GAT	p.G18D	IQCG_uc003fyp.2_5'Flank|LMLN_uc003fyt.2_Silent_p.G6G|LMLN_uc010iar.2_Missense_Mutation_p.G18D|LMLN_uc010ias.2_Silent_p.G6G|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	18					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		GGAGGAGTGGGTTACTCGGGC	0.627000													10	42					0	0	0.000673444	0	0
CWH43	80157	broad.mit.edu	37	4	49040168	49040168	+	Missense_Mutation	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr4:49040168C>G	uc003gyv.2	+	13	1956	c.1774C>G	c.(1774-1776)CTA>GTA	p.L592V	CWH43_uc011bzl.1_Missense_Mutation_p.L565V	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	592					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CAGAGATTATCTACAGCTCAC	0.323000													5	229					0	0	0.000602214	0	0
TET2	54790	broad.mit.edu	37	4	106157461	106157461	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr4:106157461G>T	uc003hxk.2	+	3	2748	c.2362G>T	c.(2362-2364)GAA>TAA	p.E788*	TET2_uc011cez.1_Nonsense_Mutation_p.E809*|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Nonsense_Mutation_p.E788*|TET2_uc003hxi.1_Nonsense_Mutation_p.E788*	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	788	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TTTTCATGGTGAAAATCAGTA	0.393000			Mis N|F		MDS								22	21					1.55795e-14	3.36906e-13	0.00188189	1	0
TRPC3	7222	broad.mit.edu	37	4	122853525	122853525	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr4:122853525G>A	uc003ieg.2	-	2	962	c.888C>T	c.(886-888)AGC>AGT	p.S296S	TRPC3_uc010inr.2_Silent_p.S223S|TRPC3_uc003ief.2_Silent_p.S223S|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	211	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GGTAAGCCGGGCTGGCCAGCC	0.587000													10	18					0	0	0.000442599	0	0
FAT1	2195	broad.mit.edu	37	4	187530418	187530418	+	Silent	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr4:187530418T>A	uc003izf.2	-	16	10313	c.10125A>T	c.(10123-10125)ATA>ATT	p.I3375I		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3375	Extracellular (Potential).|Cadherin 31.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						GGTTGCCATCTATAATTGAGT	0.478000										HNSCC(5;0.00058)			30	41					0	0	0.00127121	0	0
AGGF1	55109	broad.mit.edu	37	5	76344781	76344781	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr5:76344781C>A	uc003ket.2	+	8	1694	c.1334C>A	c.(1333-1335)ACT>AAT	p.T445N		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	445	FHA.				angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		ATGGAACATACTCTCCGAATC	0.294000													66	75					1.2582e-26	2.79063e-25	0.000781405	1	0
PCDH12	51294	broad.mit.edu	37	5	141336615	141336615	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr5:141336615C>T	uc003llx.2	-	1	2013	c.802G>A	c.(802-804)GCC>ACC	p.A268T		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	268	Extracellular (Potential).|Cadherin 3.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGTCTGTGGCGGTCAGTTTT	0.527000													34	54					0	0	0.000409698	0	0
AGXT2L2	85007	broad.mit.edu	37	5	177642285	177642285	+	Silent	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr5:177642285C>T	uc003miz.2	-	9	1326	c.1074G>A	c.(1072-1074)GGG>GGA	p.G358G	AGXT2L2_uc003miy.2_Silent_p.G83G|AGXT2L2_uc003mjc.2_Silent_p.G317G|AGXT2L2_uc003mja.2_RNA|AGXT2L2_uc003mjb.2_Silent_p.G83G|AGXT2L2_uc003mjd.1_Silent_p.G216G	NM_153373	NP_699204	Q8IUZ5	AT2L2_HUMAN	alanine-glyoxylate aminotransferase 2-like 2	358						mitochondrion	pyridoxal phosphate binding|transaminase activity			pancreas(1)	1	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.181)|all cancers(165;0.235)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	ACCTGACATCCCCGACGATGG	0.463000													22	21					0	0	0.000375601	0	0
OR2Y1	134083	broad.mit.edu	37	5	180166694	180166694	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr5:180166694C>T	uc003mmf.1	-	1	365	c.365G>A	c.(364-366)CGC>CAC	p.R122H		NM_001001657	NP_001001657	Q8NGV0	OR2Y1_HUMAN	olfactory receptor, family 2, subfamily Y,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(89;1.25e-05)|all_epithelial(37;4.36e-06)|Renal(175;0.000159)|Lung NSC(126;0.00317)|all_lung(126;0.0041)|Breast(19;0.114)	all_cancers(40;0.0834)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCAGCATAGCGGTCAAAGGC	0.607000													11	21					0	0	0.000673444	0	0
MRS2	57380	broad.mit.edu	37	6	24418322	24418322	+	Missense_Mutation	SNP	A	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr6:24418322A>T	uc003neb.2	+	8	969	c.847A>T	c.(847-849)AGT>TGT	p.S283C	MRS2_uc003nea.2_Missense_Mutation_p.S283C|MRS2_uc011djl.1_Missense_Mutation_p.S286C|MRS2_uc011djm.1_RNA|MRS2_uc011djn.1_Missense_Mutation_p.S233C|MRS2_uc003nec.2_Missense_Mutation_p.S160C	NM_020662	NP_065713	Q9HD23	MRS2_HUMAN	MRS2-like, magnesium homeostasis factor	283	Mitochondrial matrix (Potential).				ion transport	integral to membrane|mitochondrial inner membrane					0						TGAAAAGAGCAGTGCTGGGAT	0.388000													37	45					0	0	0.000953801	0	0
KCTD20	222658	broad.mit.edu	37	6	36454734	36454734	+	Missense_Mutation	SNP	C	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr6:36454734C>T	uc003ome.2	+	8	1433	c.1042C>T	c.(1042-1044)CGC>TGC	p.R348C	KCTD20_uc011dtm.1_Missense_Mutation_p.R203C|KCTD20_uc011dtn.1_Missense_Mutation_p.R102C|KCTD20_uc010jwk.2_Missense_Mutation_p.R182C|KCTD20_uc011dto.1_Missense_Mutation_p.R102C	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	348						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						TTATGTACAACGCCCCTTCAT	0.463000													41	67					0	0	0.00148497	0	0
ULBP1	80329	broad.mit.edu	37	6	150289835	150289835	+	Missense_Mutation	SNP	C	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr6:150289835C>A	uc003qnp.2	+	2	221	c.178C>A	c.(178-180)CCT>ACT	p.P60T		NM_025218	NP_079494	Q9BZM6	N2DL1_HUMAN	UL16 binding protein 1 precursor	60	MHC class I alpha-1 like.				antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|endoplasmic reticulum|MHC class I protein complex	MHC class I receptor activity			pancreas(1)	1		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.14e-11)		GGATGAAAGGCCTTTTCTTCA	0.453000													74	86					7.81431e-29	1.77878e-27	0.000781405	1	0
MLLT4	4301	broad.mit.edu	37	6	168344092	168344092	+	Missense_Mutation	SNP	T	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr6:168344092T>A	uc003qwd.2	+	24	3294	c.3152T>A	c.(3151-3153)CTA>CAA	p.L1051Q	MLLT4_uc003qwb.1_Missense_Mutation_p.L1036Q|MLLT4_uc003qwc.1_Missense_Mutation_p.L1052Q|MLLT4_uc003qwg.1_Missense_Mutation_p.L361Q	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1052	PDZ.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GATGGACGTCTAGCTGCAGGT	0.458000			T	MLL	AL								83	107					0	0	0.000781405	0	0
ACTB	60	broad.mit.edu	37	7	5568236	5568236	+	Missense_Mutation	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr7:5568236T>C	uc003sos.3	-	3	514	c.478A>G	c.(478-480)ACC>GCC	p.T160A	ACTB_uc003sor.3_Missense_Mutation_p.T38A|ACTB_uc003sot.3_Missense_Mutation_p.T160A|ACTB_uc003soq.3_Missense_Mutation_p.T38A|ACTB_uc010ksy.2_Missense_Mutation_p.T38A	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	160					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		ACAGTGTGGGTGACCCCGTCA	0.607000													82	45					0	0	0.000781405	0	0
C7orf26	79034	broad.mit.edu	37	7	6639834	6639834	+	Missense_Mutation	SNP	T	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr7:6639834T>G	uc003sqo.1	+	4	955	c.955T>G	c.(955-957)TTC>GTC	p.F319V	C7orf26_uc003sqp.1_Missense_Mutation_p.F222V|C7orf26_uc003sqq.1_Missense_Mutation_p.F120V	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	319										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		GCTGATCCTCTTCGACCACAT	0.582000													23	11					0	0	0.00047179	0	0
ASB4	51666	broad.mit.edu	37	7	95125264	95125264	+	Missense_Mutation	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr7:95125264G>A	uc011kij.1	+	2	382	c.382G>A	c.(382-384)GAT>AAT	p.D128N	ASB4_uc003unx.2_Missense_Mutation_p.D128N	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	128	ANK 2.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			GATCCTCTGTGATCGTGGGGC	0.458000													21	68					0	0	0.00152264	0	0
NRCAM	4897	broad.mit.edu	37	7	107808822	107808822	+	Silent	SNP	G	A	A			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr7:107808822G>A	uc003vfb.2	-	29	3684	c.3213C>T	c.(3211-3213)AGC>AGT	p.S1071S	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1071	Fibronectin type-III 5.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						CAGTAAGATTGCTGATCCTGG	0.363000													24	47					0	0	0.00047179	0	0
CHD7	55636	broad.mit.edu	37	8	61654762	61654762	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr8:61654762T>C	uc003xue.2	+	2	1248	c.771T>C	c.(769-771)CAT>CAC	p.H257H		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	257					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AGCAGTTCCATCACCACCCCT	0.582000													71	106					0	0	0.000781405	0	0
PTPRD	5789	broad.mit.edu	37	9	8460558	8460558	+	Missense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:8460558G>T	uc003zkk.2	-	32	4439	c.3728C>A	c.(3727-3729)ACC>AAC	p.T1243N	PTPRD_uc003zkp.2_Missense_Mutation_p.T832N|PTPRD_uc003zkq.2_Missense_Mutation_p.T832N|PTPRD_uc003zkr.2_Missense_Mutation_p.T827N|PTPRD_uc003zks.2_Missense_Mutation_p.T822N|PTPRD_uc003zkl.2_Missense_Mutation_p.T1234N|PTPRD_uc003zkm.2_Missense_Mutation_p.T1230N|PTPRD_uc003zkn.2_Missense_Mutation_p.T832N|PTPRD_uc003zko.2_Missense_Mutation_p.T829N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1243	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GTAAGGGCTGGTTGCATACAT	0.433000										TSP Lung(15;0.13)			30	42					3.86903e-22	8.47268e-21	0.000491102	1	0
GTF3C5	9328	broad.mit.edu	37	9	135917679	135917680	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:135917679_135917680TT>AA	uc004cci.3	+	2	696_697	c.359_360TT>AA	c.(358-360)ATT>AAA	p.I120K	GTF3C5_uc010mzz.2_Intron|GTF3C5_uc004ccj.3_Missense_Mutation_p.I120K	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	120						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		ATCTCCACCATTTACAAATTTC	0.371000													31	52					0	0	6.4e-05	0	0
CEL	1056	broad.mit.edu	37	9	135941956	135941956	+	Missense_Mutation	SNP	G	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:135941956G>T	uc010naa.1	+	5	603	c.587G>T	c.(586-588)TGG>TTG	p.W196L		NM_001807	NP_001798	P19835	CEL_HUMAN	carboxyl ester lipase precursor	193					cholesterol catabolic process|fatty acid catabolic process|intestinal cholesterol absorption|intestinal lipid catabolic process|pancreatic juice secretion|protein esterification	cytosol|extracellular space	acylglycerol lipase activity|carboxylesterase activity|heparin binding|sterol esterase activity|triglyceride lipase activity			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.03e-40)|Epithelial(140;3.58e-37)|GBM - Glioblastoma multiforme(294;0.00164)|READ - Rectum adenocarcinoma(205;0.196)		GCCATTGCTTGGGTGAAGAGG	0.642000													9	118					0.000274275	0.00558231	0.000274275	1	0
CACNA1B	774	broad.mit.edu	37	9	140943670	140943670	+	Silent	SNP	T	C	C			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:140943670T>C	uc004cog.2	+	24	3758	c.3613T>C	c.(3613-3615)TTG>CTG	p.L1205L	CACNA1B_uc011mfd.1_Silent_p.L735L|CACNA1B_uc004coi.2_Silent_p.L415L	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1205	Helical; Name=S2 of repeat III; (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GATGATCGACTTGGGACTGCT	0.418000													26	40					0	0	0.000878237	0	0
TSPYL2	64061	broad.mit.edu	37	X	53111965	53111965	+	Silent	SNP	C	G	G			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chrX:53111965C>G	uc004drw.2	+	1	417	c.285C>G	c.(283-285)CCC>CCG	p.P95P	TSPYL2_uc004drv.2_Silent_p.P95P|TSPYL2_uc004drx.1_5'Flank	NM_022117	NP_071400	Q9H2G4	TSYL2_HUMAN	TSPY-like 2	95					cell cycle|chromatin modification|negative regulation of cell cycle|negative regulation of cell growth|negative regulation of DNA replication|nucleosome assembly|regulation of protein kinase activity|regulation of signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|rDNA binding				0						CTGAGTGTCCCGGCTGGGATT	0.711000													4	1					0	0	0.00024832	0	0
C16orf7	9605	broad.mit.edu	37	16	89775318	89775318	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr16:89775318delG	uc002fom.1	-	13	1769	c.1644delC	c.(1642-1644)CCCfs	p.P548fs	C16orf7_uc002fol.1_Frame_Shift_Del_p.P478fs|uc002fon.1_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	548	VPS9.				ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CCTCTGGGGTGGGGCAGTAGT	0.682													12	17	---	---	---	---					
FAM20A	54757	broad.mit.edu	37	17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr17:66538845_66538846delAA	uc002jho.2	-	6	1205_1206	c.917_918delTT	c.(916-918)TTTfs	p.F306fs	FAM20A_uc010wqp.1_Frame_Shift_Del_p.F168fs|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Frame_Shift_Del_p.L9fs	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	306						extracellular region					0	Breast(10;1.64e-13)					CTGGAGAGACAAAGAAAACACT	0.525													30	104	---	---	---	---					
SMARCB1	6598	broad.mit.edu	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr22:24175838_24175839insT	uc002zyb.2	+	8	1273_1274	c.1066_1067insT	c.(1066-1068)CTGfs	p.L356fs	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Frame_Shift_Ins_p.L347fs|SMARCB1_uc002zyd.2_Frame_Shift_Ins_p.L365fs	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	356					cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(2)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				GCTGGAGACTCTGACAGACGCT	0.629			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				91	21	---	---	---	---					
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr3:12046124_12046126delAGC	uc003bwm.2	+	1	263_265	c.99_101delAGC	c.(97-102)CAACCG>CAG	p.P40del	SYN2_uc003bwl.1_In_Frame_Del_p.P40del	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	40					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCCCCAGCAAGCGCCGAcgccg	0.345													3	4	---	---	---	---					
FRYL	285527	broad.mit.edu	37	4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr4:48598002_48598003delTT	uc003gyh.1	-	14	1655_1656	c.1050_1051delAA	c.(1048-1053)AAAATGfs	p.K350fs	FRYL_uc003gyk.2_Frame_Shift_Del_p.K350fs	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	350_351					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ACTCGAGACATTTTCGGATCTT	0.302													18	46	---	---	---	---					
NME5	8382	broad.mit.edu	37	5	137474383	137474383	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr5:137474383delC	uc003lce.2	-	2	165	c.87delG	c.(85-87)GAGfs	p.E29fs	BRD8_uc003lcc.1_Intron	NM_003551	NP_003542	P56597	NDK5_HUMAN	non-metastatic cells 5, protein expressed in	29					anti-apoptosis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatid development|UTP biosynthetic process		ATP binding|nucleoside diphosphate kinase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TATCTTGTATCTCCTCCTCTT	0.368													32	32	---	---	---	---					
BNC2	54796	broad.mit.edu	37	9	16552614	16552615	+	In_Frame_Ins	INS	-	GAA	GAA			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:16552614_16552615insGAA	uc003zml.2	-	5	722_723	c.582_583insTTC	c.(580-585)insTTC	p.194_195insF	BNC2_uc011lmw.1_In_Frame_Ins_p.99_100insF|BNC2_uc003zmm.2_In_Frame_Ins_p.152_153insF|BNC2_uc003zmq.1_In_Frame_Ins_p.208_209insF|BNC2_uc003zmr.1_In_Frame_Ins_p.231_232insF|BNC2_uc003zmp.1_In_Frame_Ins_p.222_223insF|BNC2_uc010mij.1_In_Frame_Ins_p.116_117insF|BNC2_uc011lmv.1_In_Frame_Ins_p.20_21insF|BNC2_uc003zmo.1_In_Frame_Ins_p.116_117insF	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	194_195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		TTCAGGACGCTGAAGAGACGGT	0.550													17	64	---	---	---	---					
LCN12	286256	broad.mit.edu	37	9	139846817	139846819	+	In_Frame_Del	DEL	TGC	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	g.chr9:139846817_139846819delTGC	uc004ckb.2	+	1	50_52	c.38_40delTGC	c.(37-42)TTGCTG>TTG	p.13_14LL>L	LCN12_uc004ckc.2_In_Frame_Del_p.13_14LL>L	NM_178536	NP_848631	Q6JVE5	LCN12_HUMAN	lipocalcin 12 precursor	13_14					lipid metabolic process	extracellular region	binding|transporter activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		TGGCTCTCCTTGCTGAAAGTCCT	0.626													7	20	---	---	---	---					
C16orf7	9605	broad.mit.edu	37	16	89775318	89775318	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr16:89775318delG	uc002fom.1	-	13	1769	c.1644delC	c.(1642-1644)CCCfs	p.P548fs	C16orf7_uc002fol.1_Frame_Shift_Del_p.P478fs|uc002fon.1_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	548	VPS9.				ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CCTCTGGGGTGGGGCAGTAGT	0.682													12	17	---	---	---	---					
FAM20A	54757	broad.mit.edu	37	17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr17:66538845_66538846delAA	uc002jho.2	-	6	1205_1206	c.917_918delTT	c.(916-918)TTTfs	p.F306fs	FAM20A_uc010wqp.1_Frame_Shift_Del_p.F168fs|PRKAR1A_uc002jhm.2_Intron|FAM20A_uc002jhn.2_Frame_Shift_Del_p.L9fs	NM_017565	NP_060035	Q96MK3	FA20A_HUMAN	family with sequence similarity 20, member A	306						extracellular region					0	Breast(10;1.64e-13)					CTGGAGAGACAAAGAAAACACT	0.525													30	104	---	---	---	---					
CTCFL	140690	broad.mit.edu	37	20	56099187	56099187	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr20:56099187delT	uc010gix.1	-	1	737	c.75delA	c.(73-75)AAAfs	p.K25fs	CTCFL_uc010giw.1_Frame_Shift_Del_p.K25fs|CTCFL_uc002xym.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010giz.1_Intron|CTCFL_uc010giy.1_Intron|CTCFL_uc010gja.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjb.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjc.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjd.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gje.2_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjf.2_Intron|CTCFL_uc010gjg.2_Intron|CTCFL_uc010gjh.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gji.1_Intron|CTCFL_uc010gjj.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjk.1_Frame_Shift_Del_p.K25fs|CTCFL_uc010gjl.1_Frame_Shift_Del_p.K25fs	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	25					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			CCTTCAGGCCTTTTTCCGGCA	0.502													9	536	---	---	---	---					
SMARCB1	6598	broad.mit.edu	37	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr22:24175838_24175839insT	uc002zyb.2	+	8	1273_1274	c.1066_1067insT	c.(1066-1068)CTGfs	p.L356fs	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Frame_Shift_Ins_p.L347fs|SMARCB1_uc002zyd.2_Frame_Shift_Ins_p.L365fs	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	356					cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(2)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				GCTGGAGACTCTGACAGACGCT	0.629			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				91	21	---	---	---	---					
FRYL	285527	broad.mit.edu	37	4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr4:48598002_48598003delTT	uc003gyh.1	-	14	1655_1656	c.1050_1051delAA	c.(1048-1053)AAAATGfs	p.K350fs	FRYL_uc003gyk.2_Frame_Shift_Del_p.K350fs	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	350_351					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ACTCGAGACATTTTCGGATCTT	0.302													18	46	---	---	---	---					
NME5	8382	broad.mit.edu	37	5	137474383	137474383	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr5:137474383delC	uc003lce.2	-	2	165	c.87delG	c.(85-87)GAGfs	p.E29fs	BRD8_uc003lcc.1_Intron	NM_003551	NP_003542	P56597	NDK5_HUMAN	non-metastatic cells 5, protein expressed in	29					anti-apoptosis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatid development|UTP biosynthetic process		ATP binding|nucleoside diphosphate kinase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			TATCTTGTATCTCCTCCTCTT	0.368													32	32	---	---	---	---					
BNC2	54796	broad.mit.edu	37	9	16552614	16552615	+	In_Frame_Ins	INS	-	GAA	GAA			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:16552614_16552615insGAA	uc003zml.2	-	5	722_723	c.582_583insTTC	c.(580-585)insTTC	p.194_195insF	BNC2_uc011lmw.1_In_Frame_Ins_p.99_100insF|BNC2_uc003zmm.2_In_Frame_Ins_p.152_153insF|BNC2_uc003zmq.1_In_Frame_Ins_p.208_209insF|BNC2_uc003zmr.1_In_Frame_Ins_p.231_232insF|BNC2_uc003zmp.1_In_Frame_Ins_p.222_223insF|BNC2_uc010mij.1_In_Frame_Ins_p.116_117insF|BNC2_uc011lmv.1_In_Frame_Ins_p.20_21insF|BNC2_uc003zmo.1_In_Frame_Ins_p.116_117insF	NM_017637	NP_060107	Q6ZN30	BNC2_HUMAN	basonuclin 2	194_195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	zinc ion binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(50;9.01e-08)		TTCAGGACGCTGAAGAGACGGT	0.550													17	64	---	---	---	---					
LCN12	286256	broad.mit.edu	37	9	139846817	139846819	+	In_Frame_Del	DEL	TGC	-	-			TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	98a51f37-1d5f-4db0-b785-b751168bf46e	a2f6645f-12e1-48ca-9592-46e5300700bb	g.chr9:139846817_139846819delTGC	uc004ckb.2	+	1	50_52	c.38_40delTGC	c.(37-42)TTGCTG>TTG	p.13_14LL>L	LCN12_uc004ckc.2_In_Frame_Del_p.13_14LL>L	NM_178536	NP_848631	Q6JVE5	LCN12_HUMAN	lipocalcin 12 precursor	13_14					lipid metabolic process	extracellular region	binding|transporter activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.19)	OV - Ovarian serous cystadenocarcinoma(145;7.8e-06)|Epithelial(140;0.000106)		TGGCTCTCCTTGCTGAAAGTCCT	0.626													7	20	---	---	---	---					
