Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16907242	16907243	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:16907242_16907243GG>TT	uc009vos.1	-	16	2476_2477	c.1588_1589CC>AA	c.(1588-1590)CCA>AAA	p.P530K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Intron|NBPF1_uc010oce.1_Missense_Mutation_p.P259K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	530	NBPF 2.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGCTACCTGGGAGAATGTTT	0.421													16	652					0	0	6.4e-05	0	0
NBPF3	84224	broad.mit.edu	37	1	21798099	21798099	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:21798099C>G	uc001ber.2	+	5	834	c.484C>G	c.(484-486)CTG>GTG	p.L162V	NBPF3_uc001bes.2_Missense_Mutation_p.L106V|NBPF3_uc009vqb.2_Missense_Mutation_p.L162V|NBPF3_uc010odm.1_Missense_Mutation_p.L92V	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	162	Potential.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGAACGAGAGCTGACCCAGTT	0.473													4	206					0	0	3.59834e-05	0	0
CLCC1	23155	broad.mit.edu	37	1	109492524	109492525	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:109492524_109492525CC>AA	uc001dwe.1	-	3	240_241	c.148_149GG>TT	c.(148-150)GGG>TTG	p.G50L	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.G50L|CLCC1_uc001dwg.1_Missense_Mutation_p.G50L|CLCC1_uc009wes.1_Missense_Mutation_p.G50L|CLCC1_uc009wet.1_Missense_Mutation_p.G50L|CLCC1_uc001dwh.1_Missense_Mutation_p.G50L	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	50						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		ATCCTTTTCCCCTGAAATACCA	0.287													13	509					0	0	6.4e-05	0	0
WDR47	22911	broad.mit.edu	37	1	109554217	109554218	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:109554217_109554218CG>AT	uc001dwj.2	-	5	826_827	c.450_451CG>AT	c.(448-453)GCCGAG>GCATAG	p.E151*	WDR47_uc001dwl.2_Nonsense_Mutation_p.E158*|WDR47_uc001dwi.2_Nonsense_Mutation_p.E151*|WDR47_uc001dwk.2_Nonsense_Mutation_p.E123*|WDR47_uc010ovf.1_Nonsense_Mutation_p.E78*	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	151										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		TCCTTAAACTCGGCATGATTGG	0.441													14	573					0	0	6.4e-05	0	0
KIAA1324	57535	broad.mit.edu	37	1	109735314	109735314	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:109735314C>T	uc001dwq.2	+	15	1901	c.1765C>T	c.(1765-1767)CGT>TGT	p.R589C	KIAA1324_uc009wex.1_Missense_Mutation_p.R539C|KIAA1324_uc009wey.2_Missense_Mutation_p.R502C|KIAA1324_uc010ovg.1_Missense_Mutation_p.R487C|KIAA1324_uc001dwr.2_Missense_Mutation_p.R239C	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	589	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		CTCCTACTGCCGTCCCTGTGC	0.522													105	257					0	0	0.000147903	0	0
SORT1	6272	broad.mit.edu	37	1	109884743	109884744	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:109884743_109884744CC>AA	uc001dxm.1	-	9	1049_1050	c.1000_1001GG>TT	c.(1000-1002)GGG>TTG	p.G334L	SORT1_uc010ovi.1_Missense_Mutation_p.G197L	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	334	BNR 5.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		CCATGTGTCCCCTTGATCTGTT	0.446													16	473					0	0	6.4e-05	0	0
SYPL2	284612	broad.mit.edu	37	1	110019468	110019469	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:110019468_110019469GG>TT	uc001dxp.2	+	4	691_692	c.325_326GG>TT	c.(325-327)GGG>TTG	p.G109L	SYPL2_uc001dxo.2_Missense_Mutation_p.G109L|SYPL2_uc010ovk.1_Missense_Mutation_p.G109L|SYPL2_uc001dxq.2_Missense_Mutation_p.G17L	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	109	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		GCACCTCATGGGGGACTTCTCT	0.564													10	315					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120437263	120437264	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:120437263_120437264GG>TT	uc001eij.2	-	1	1850_1851	c.1696_1697CC>AA	c.(1696-1698)CCT>AAT	p.P566N		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	566	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TGGCAAATCAGGGATGGTTTCA	0.386													16	604					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120438670	120438671	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:120438670_120438671CC>AA	uc001eij.2	-	1	443_444	c.289_290GG>TT	c.(289-291)GGG>TTG	p.G97L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	97					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CAGCAGTTCCCCATGTTCTGTG	0.49													11	451					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120438804	120438805	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:120438804_120438805CC>AA	uc001eij.2	-	1	309_310	c.155_156GG>TT	c.(154-156)CGG>CTT	p.R52L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	52					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		GCACCTCTCCCCGGAAGCTCAG	0.52													10	330					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144904635	144904636	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:144904635_144904636GG>TT	uc001elw.3	-	20	2967_2968	c.2676_2677CC>AA	c.(2674-2679)GCCCAT>GCAAAT	p.H893N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H959N|PDE4DIP_uc001emc.1_Missense_Mutation_p.H893N|PDE4DIP_uc001emd.1_Missense_Mutation_p.H893N|PDE4DIP_uc001emb.1_Missense_Mutation_p.H1056N|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Missense_Mutation_p.H678N	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	893	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTCTCTGGATGGGCATGGAACT	0.386			T	PDGFRB	MPD								9	352					0	0	6.4e-05	0	0
LOC200030	200030	broad.mit.edu	37	1	148342006	148342007	+	Splice_Site	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:148342006_148342007CC>AA	uc001eqf.2	-	5	602	c.567_splice	c.e5-1	p.R189_splice	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|NBPF14_uc009wkf.1_Splice_Site|uc001erd.3_Splice_Site_p.R189_splice|uc001erc.3_Splice_Site|uc010paj.1_Intron|uc010pau.1_5'UTR|uc010pav.1_Splice_Site_p.R189_splice|uc010paw.1_Splice_Site_p.R114_splice	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672							cytoplasm					0						TCTGCACCTCCCTGATGAGCCA	0.525													15	443					0	0	6.4e-05	0	0
FLG	2312	broad.mit.edu	37	1	152285273	152285274	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:152285273_152285274GG>TT	uc001ezu.1	-	3	2124_2125	c.2088_2089CC>AA	c.(2086-2091)TCCCAT>TCAAAT	p.H697N	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	697	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCTGTTCATGGGATGACGCAG	0.554									Ichthyosis				14	411					0	0	6.4e-05	0	0
HSPA6	3310	broad.mit.edu	37	1	161494813	161494813	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:161494813C>T	uc001gap.2	+	2	1025	c.365C>T	c.(364-366)TCG>TTG	p.S122L	HSPA6_uc001gaq.2_Missense_Mutation_p.S122L	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	122					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GAGGAGATCTCGTCCATGGTG	0.627													5	25					0	0	8.12818e-05	0	0
TDRD5	163589	broad.mit.edu	37	1	179631268	179631268	+	Silent	SNP	G	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:179631268G>T	uc001gnf.1	+	14	2440	c.2190G>T	c.(2188-2190)CTG>CTT	p.L730L	TDRD5_uc010pnp.1_Silent_p.L784L|TDRD5_uc001gnh.1_Silent_p.L285L	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	730					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TGCCATGCCTGGAGTCAGTGA	0.403													30	72					3.28013e-08	1.70104e-06	0.000159656	1	0
C1orf106	55765	broad.mit.edu	37	1	200869294	200869294	+	Silent	SNP	T	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:200869294T>A	uc001gvo.2	+	4	528	c.498T>A	c.(496-498)GTT>GTA	p.V166V	C1orf106_uc010ppm.1_Silent_p.V81V	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	166										skin(2)|ovary(1)	3						CCCCCAAGGTTCGCCGCAGGA	0.617													15	18					0	0	7.07596e-05	0	0
ELK4	2005	broad.mit.edu	37	1	205588103	205588103	+	Silent	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:205588103A>G	uc001hcy.1	-	4	2429	c.1179T>C	c.(1177-1179)GGT>GGC	p.G393G		NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	393						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GTGTGTTAGCACCTTGCAGTC	0.458			T	SLC45A3	prostate								12	40					0	0	0.000219431	0	0
PROX1	5629	broad.mit.edu	37	1	214184967	214184967	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:214184967G>C	uc001hkh.2	+	4	2209	c.1937G>C	c.(1936-1938)GGG>GCG	p.G646A		NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	646	Prospero-like.				aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		ATCAACGATGGGGTCACCAGT	0.443													3	73					0	0	6.4e-05	0	0
TAF1A	9015	broad.mit.edu	37	1	222750876	222750877	+	Missense_Mutation	DNP	CG	AT	AT	rs145721552	by1000genomes	TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:222750876_222750877CG>AT	uc009xdz.1	-	5	703_704	c.514_515CG>AT	c.(514-516)CGG>ATG	p.R172M	TAF1A_uc001hni.1_Missense_Mutation_p.R58M|TAF1A_uc001hnj.2_Missense_Mutation_p.R172M|TAF1A_uc001hnk.2_Missense_Mutation_p.R58M|TAF1A_uc010pur.1_Missense_Mutation_p.R172M	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	172					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		TAATATTTCCCGGGAAGACGTA	0.381													20	768					0	0	6.4e-05	0	0
MIA3	375056	broad.mit.edu	37	1	222794543	222794544	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:222794543_222794544CG>AT	uc001hnl.2	+	2	185_186	c.176_177CG>AT	c.(175-177)CCG>CAT	p.P59H		NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	59	SH3.|Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		TTCACAGGCCCGGATTGTCGTT	0.391													14	443					0	0	6.4e-05	0	0
MIA3	375056	broad.mit.edu	37	1	222827638	222827639	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:222827638_222827639CG>AT	uc001hnl.2	+	16	4384_4385	c.4375_4376CG>AT	c.(4375-4377)CGG>ATG	p.R1459M	MIA3_uc009xea.1_Missense_Mutation_p.R1236M|MIA3_uc001hnm.2_Missense_Mutation_p.R337M	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1459	Cytoplasmic (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		GGATGTCTCTCGGGTATAATCG	0.351													10	618					0	0	6.4e-05	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426													13	674					0	0	6.4e-05	0	0
RYR2	6262	broad.mit.edu	37	1	237993848	237993848	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:237993848G>C	uc001hyl.1	+	103	14794	c.14674G>C	c.(14674-14676)GGG>CGG	p.G4892R	RYR2_uc010pyb.1_Intron	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4892					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTCATCTGTGGGATAGGCAA	0.433													4	182					0	0	1.23904e-05	0	0
PARD3	56288	broad.mit.edu	37	10	34759192	34759192	+	Splice_Site	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr10:34759192C>T	uc010qej.1	-	4	404	c.404_splice	c.e4-1	p.N135_splice	PARD3_uc010qek.1_Splice_Site_p.N135_splice|PARD3_uc010qel.1_Splice_Site_p.N135_splice|PARD3_uc010qem.1_Splice_Site_p.N135_splice|PARD3_uc010qen.1_Splice_Site_p.N135_splice|PARD3_uc010qeo.1_Splice_Site_p.N135_splice|PARD3_uc010qep.1_Splice_Site_p.N135_splice|PARD3_uc010qeq.1_Splice_Site_p.N135_splice|PARD3_uc001ixp.1_Splice_Site|PARD3_uc001ixq.1_Splice_Site_p.N135_splice|PARD3_uc001ixr.1_Splice_Site_p.N135_splice|PARD3_uc001ixt.1_Splice_Site|PARD3_uc001ixu.1_Splice_Site_p.N135_splice	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog						activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				AGAGGCATATCTGTAAACACA	0.388													27	68					0	0	0.000227799	0	0
KCNMA1	3778	broad.mit.edu	37	10	78943241	78943241	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr10:78943241A>G	uc001jxn.2	-	5	923	c.746T>C	c.(745-747)GTA>GCA	p.V249A	KCNMA1_uc001jxj.2_Missense_Mutation_p.V249A|KCNMA1_uc001jxk.1_5'UTR|KCNMA1_uc009xrt.1_Missense_Mutation_p.V69A|KCNMA1_uc001jxo.2_Missense_Mutation_p.V249A|KCNMA1_uc001jxm.2_Missense_Mutation_p.V249A|KCNMA1_uc001jxq.2_Missense_Mutation_p.V249A	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	249	Helical; Name=Segment S3; (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GAAATCCACTACAGAGTTCAC	0.448													5	17					0	0	1.23904e-05	0	0
TTC17	55761	broad.mit.edu	37	11	43515376	43515377	+	Nonsense_Mutation	DNP	CG	AT	AT	rs28709458		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr11:43515376_43515377CG>AT	uc001mxi.2	+	24	3362_3363	c.3348_3349CG>AT	c.(3346-3351)CCCGAG>CCATAG	p.E1117*	TTC17_uc010rfj.1_Nonsense_Mutation_p.E1117*|TTC17_uc001mxl.2_Nonsense_Mutation_p.E173*|TTC17_uc001mxm.2_Nonsense_Mutation_p.E98*	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	1117	TPR 6.						binding			ovary(5)	5						AGCTTCAGCCCGAGTTTGTCCC	0.5													10	212					0	0	6.4e-05	0	0
PDE2A	5138	broad.mit.edu	37	11	72353367	72353368	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr11:72353367_72353368CC>AA	uc010rrc.1	-	2	317_318	c.74_75GG>TT	c.(73-75)CGG>CTT	p.R25L	PDE2A_uc001oso.2_5'UTR|PDE2A_uc010rra.1_Missense_Mutation_p.R18L|PDE2A_uc001osn.2_Missense_Mutation_p.R18L|PDE2A_uc010rrb.1_Missense_Mutation_p.R16L|PDE2A_uc010rrd.1_Missense_Mutation_p.R25L|PDE2A_uc001osq.2_RNA	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	25					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CCTGCTGGCCCCGCCTGAGGAA	0.604													7	95					0	0	6.4e-05	0	0
SLC36A4	120103	broad.mit.edu	37	11	92918935	92918936	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr11:92918935_92918936CC>AA	uc001pdn.2	-	2	197_198	c.100_101GG>TT	c.(100-102)GGG>TTG	p.G34L	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	34					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATCTGATGTCCCATCAAAATTC	0.351													13	532					0	0	6.4e-05	0	0
HEPHL1	341208	broad.mit.edu	37	11	93796824	93796824	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr11:93796824A>G	uc001pep.2	+	3	723	c.566A>G	c.(565-567)CAC>CGC	p.H189R		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	189	Plastocyanin-like 1.|Extracellular (Potential).	Copper 3; type 3 (By similarity).			copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TACCATTCGCACATCGACGCC	0.537													11	58					0	0	0.000219431	0	0
SORL1	6653	broad.mit.edu	37	11	121429321	121429321	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr11:121429321G>C	uc001pxx.2	+	20	2765	c.2685G>C	c.(2683-2685)TGG>TGC	p.W895C		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	895	Extracellular (Potential).|LDL-receptor class B 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GGACAGACTGGGGAGACCTGA	0.488													4	113					0	0	3.59834e-05	0	0
NUP37	79023	broad.mit.edu	37	12	102512168	102512168	+	Silent	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr12:102512168A>G	uc001tjc.2	-	1	194	c.129T>C	c.(127-129)TAT>TAC	p.Y43Y	NUP37_uc009zub.1_Silent_p.Y43Y|C12orf48_uc001tjd.2_5'Flank|C12orf48_uc001tje.2_5'Flank|C12orf48_uc001tjg.2_5'Flank|C12orf48_uc010swa.1_5'Flank|C12orf48_uc001tjf.2_5'Flank|C12orf48_uc001tjh.2_5'Flank|C12orf48_uc010swb.1_5'Flank|C12orf48_uc001tji.2_5'Flank	NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	43					carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						CAATGACCACATAATTATTGC	0.388													26	113					0	0	0.000117367	0	0
CCDC92	80212	broad.mit.edu	37	12	124421900	124421900	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr12:124421900C>G	uc001ufw.1	-	5	848	c.701G>C	c.(700-702)CGG>CCG	p.R234P	CCDC92_uc001ufv.1_Missense_Mutation_p.R217P|CCDC92_uc001ufx.1_Missense_Mutation_p.R234P|CCDC92_uc001ufy.1_Missense_Mutation_p.R217P	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	234											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		CACTGGTTCCCGCAAAAGGAG	0.607													3	24					0	0	0.00024832	0	0
STX2	2054	broad.mit.edu	37	12	131293178	131293179	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr12:131293178_131293179GG>TT	uc001uio.2	-	5	518_519	c.351_352CC>AA	c.(349-354)ACCCAG>ACAAAG	p.Q118K	STX2_uc001uip.2_Missense_Mutation_p.Q118K|STX2_uc010tbj.1_Missense_Mutation_p.Q118K	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	118	Cytoplasmic (Potential).				acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		TAGCAAACCTGGGTTCTTCGTA	0.381													13	317					0	0	6.4e-05	0	0
FLT1	2321	broad.mit.edu	37	13	29005390	29005390	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr13:29005390T>G	uc001usb.3	-	7	1156	c.871A>C	c.(871-873)ATA>CTA	p.I291L	FLT1_uc010aar.1_Missense_Mutation_p.I291L|FLT1_uc001usc.3_Missense_Mutation_p.I291L|FLT1_uc010tdp.1_Missense_Mutation_p.I291L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	291	Extracellular (Potential).|Ig-like C2-type 3.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CTGTAGAATATGTTGGCATGG	0.368													39	53					0	0	8.96297e-05	0	0
ESD	2098	broad.mit.edu	37	13	47365541	47365541	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr13:47365541A>G	uc001vbn.2	-	3	191	c.8T>C	c.(7-9)TTG>TCG	p.L3S	ESD_uc001vbo.2_Missense_Mutation_p.L3S	NM_001984	NP_001975	P10768	ESTD_HUMAN	esterase D/formylglutathione hydrolase	3						cytoplasmic membrane-bounded vesicle	carboxylesterase activity|S-formylglutathione hydrolase activity			ovary(1)	1		all_lung(13;3.54e-08)|Lung NSC(96;9.1e-06)|Breast(56;0.000148)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)		GBM - Glioblastoma multiforme(144;2.66e-05)	Glutathione(DB00143)	AATCTGCTTCAATGCCATTCT	0.313													31	57					0	0	0.000109025	0	0
PCDH20	64881	broad.mit.edu	37	13	61986652	61986652	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr13:61986652T>A	uc001vid.3	-	2	1944	c.1580A>T	c.(1579-1581)GAT>GTT	p.D527V	PCDH20_uc010thj.1_Missense_Mutation_p.D527V	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	500	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ATCATTGTCATCTAAAAGTTG	0.403													27	118					0	0	0.000184323	0	0
CDKL1	8814	broad.mit.edu	37	14	50844944	50844944	+	Silent	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr14:50844944G>C	uc010anu.1	-	9	1305	c.1305C>G	c.(1303-1305)CCC>CCG	p.P435P	CDKL1_uc001wxz.2_Intron	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					ccttaggagggggatgcctgt	0													3	29					0	0	0.00024832	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416782	105416783	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr14:105416782_105416783CC>AA	uc010axc.1	-	7	5125_5126	c.5005_5006GG>TT	c.(5005-5007)GGG>TTG	p.G1669L	AHNAK2_uc001ypx.2_Missense_Mutation_p.G1569L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1669						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCCGACACCCCAAATGATGGC	0.604													8	174					0	0	6.4e-05	0	0
GCOM1	145781	broad.mit.edu	37	15	57913897	57913897	+	Nonsense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr15:57913897C>G	uc002aei.2	+	4	529	c.410C>G	c.(409-411)TCA>TGA	p.S137*	GCOM1_uc002aej.2_Nonsense_Mutation_p.S137*|GCOM1_uc002aek.2_Intron|GCOM1_uc002ael.2_Intron|GCOM1_uc002aem.2_Nonsense_Mutation_p.S137*|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Nonsense_Mutation_p.S137*|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	137	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						CAGGAACTATCAGTAAGTCAT	0.468													11	100					0	0	0.00010058	0	0
GRINL1A	81488	broad.mit.edu	37	15	58001316	58001316	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr15:58001316C>G	uc002aet.3	+	2	658	c.518C>G	c.(517-519)CCG>CGG	p.P173R	GCOM1_uc002aem.2_Intron|GCOM1_uc002aeq.2_Intron|GCOM1_uc002aen.2_Intron|GCOM1_uc010bfy.2_Intron|GCOM1_uc002aeo.2_Intron|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_Intron|GRINL1A_uc002aes.2_Intron|GRINL1A_uc002aev.1_3'UTR|GRINL1A_uc010ugu.1_RNA|GRINL1A_uc002aeu.3_Intron	NM_015532	NP_056347	P0CAP1	GCOM1_HUMAN	glutamate receptor, ionotropic, N-methyl	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band					0				all cancers(107;0.0697)|GBM - Glioblastoma multiforme(80;0.12)		GAGCATCACCCGCGGCATCGT	0.488													3	34					0	0	1.23904e-05	0	0
OR4F6	390648	broad.mit.edu	37	15	102346042	102346043	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr15:102346042_102346043GG>TT	uc010utr.1	+	1	120_121	c.120_121GG>TT	c.(118-123)ATGGGA>ATTTGA	p.40_41MG>I*		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	40_41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CAAGCCTGATGGGAAATCTCCT	0.485													10	208					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	16	21854811	21854811	+	Silent	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr16:21854811T>C	uc002djr.3	-	6	623	c.441A>G	c.(439-441)AGA>AGG	p.R147R	uc002djs.3_RNA|uc002djq.3_Silent_p.R128R|uc010vbn.1_Silent_p.R147R	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		TTTCCACATGTCTCCGTAGAG	0.408													4	109					0	0	1.23904e-05	0	0
C16orf78	123970	broad.mit.edu	37	16	49407922	49407922	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr16:49407922A>C	uc002efr.2	+	1	115	c.72A>C	c.(70-72)GAA>GAC	p.E24D		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	24										central_nervous_system(1)	1						AGACTGCTGAAGATAGGCGCA	0.517													21	70					0	0	4.16121e-05	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53691431	53691432	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr16:53691431_53691432CG>AT	uc002ehp.2	-	13	1578_1579	c.1514_1515CG>AT	c.(1513-1515)ACG>AAT	p.T505N	RPGRIP1L_uc002eho.3_Missense_Mutation_p.T505N|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.T505N|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.T505N|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.T505N	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	505	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GCTCTTGCACCGTTTCTGCATG	0.337													13	635					0	0	6.4e-05	0	0
SLC38A8	146167	broad.mit.edu	37	16	84066960	84066960	+	Missense_Mutation	SNP	C	A	A	rs142152244		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr16:84066960C>A	uc002fhg.1	-	3	503	c.503G>T	c.(502-504)CGG>CTG	p.R168L		NM_001080442	NP_001073911	A6NNN8	S38A8_HUMAN	solute carrier family 38, member 8	168	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane					0						GGCGATCTCCCGCGGGGCAGA	0.652													7	74					8.12818e-05	0.00411422	8.12818e-05	1	0
SERPINF1	5176	broad.mit.edu	37	17	1680505	1680505	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:1680505C>G	uc002ftl.2	+	8	1179	c.1022C>G	c.(1021-1023)CCA>CGA	p.P341R	SERPINF1_uc010cjw.2_Missense_Mutation_p.P154R	NM_002615	NP_002606	P36955	PEDF_HUMAN	serine (or cysteine) proteinase inhibitor, clade	341					cell proliferation|negative regulation of angiogenesis|positive regulation of neurogenesis|regulation of proteolysis	extracellular space|melanosome	serine-type endopeptidase inhibitor activity			ovary(1)	1						TTTGATTCACCAGACTTTAGC	0.537													4	135					0	0	1.23904e-05	0	0
WDR16	146845	broad.mit.edu	37	17	9515650	9515650	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:9515650C>G	uc002gly.2	+	8	948	c.879C>G	c.(877-879)ATC>ATG	p.I293M	WDR16_uc002glz.2_Missense_Mutation_p.I225M|WDR16_uc010coc.2_Missense_Mutation_p.I303M	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	293	WD 4.					cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						AAGGCGGCATCACTTCTATCA	0.433													19	46					0	0	9.7654e-05	0	0
MYH1	4619	broad.mit.edu	37	17	10408756	10408756	+	Silent	SNP	G	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:10408756G>A	uc002gmo.2	-	20	2341	c.2247C>T	c.(2245-2247)CTC>CTT	p.L749L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	749	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TGGACCCCAGGAGCTTCTCTG	0.403													20	42					0	0	0.000132079	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13399557	13399557	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:13399557T>G	uc002gob.1	-	2	1976	c.1178A>C	c.(1177-1179)AAG>ACG	p.K393T		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	393	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		CTGGTAGAACTTGAGGTTGAA	0.468													13	45					0	0	9.7654e-05	0	0
ALDOC	230	broad.mit.edu	37	17	26901545	26901545	+	Silent	SNP	G	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:26901545G>A	uc002hbp.2	-	6	736	c.591C>T	c.(589-591)CAC>CAT	p.H197H	PIGS_uc002hbo.2_5'Flank|PIGS_uc010wap.1_5'Flank|ALDOC_uc010cro.2_Intron	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	197					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					GTTTGAGGTCGTGGTCTCCAT	0.522													47	90					0	0	0.000147903	0	0
ITGA3	3675	broad.mit.edu	37	17	48157685	48157685	+	Silent	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:48157685C>T	uc010dbl.2	+	22	3230	c.2766C>T	c.(2764-2766)CCC>CCT	p.P922P	ITGA3_uc010dbm.2_Silent_p.P922P	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	922	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						CTGATGCCCCCGTTGTCACCA	0.602													12	5					0	0	5.01169e-05	0	0
ABCA5	23461	broad.mit.edu	37	17	67251966	67251966	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:67251966A>G	uc002jif.2	-	29	5102	c.3884T>C	c.(3883-3885)TTG>TCG	p.L1295S	ABCA5_uc002jib.2_Missense_Mutation_p.L261S|ABCA5_uc002jic.2_Missense_Mutation_p.L518S|ABCA5_uc002jid.2_Missense_Mutation_p.L212S|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Missense_Mutation_p.L1295S	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1295	ABC transporter 2.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					TTCTTTATGCAAATTGCTGAC	0.294													19	54					0	0	9.7654e-05	0	0
SMCHD1	23347	broad.mit.edu	37	18	2760728	2760728	+	Silent	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr18:2760728C>T	uc002klm.3	+	35	4614	c.4425C>T	c.(4423-4425)AAC>AAT	p.N1475N	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1475					chromosome organization		ATP binding				0						ATATTCTCAACAGTGAACAGG	0.294													13	52					0	0	0.000219431	0	0
CHMP1B	57132	broad.mit.edu	37	18	11852107	11852107	+	Silent	SNP	G	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr18:11852107G>A	uc002kqe.2	+	1	719	c.597G>A	c.(595-597)GTG>GTA	p.V199V	GNAL_uc002kqc.2_Intron|GNAL_uc010dkz.2_Intron|GNAL_uc002kqd.2_Intron	NM_020412	NP_065145	Q7LBR1	CHM1B_HUMAN	chromatin modifying protein 1B	199	Interaction with SPAST.|Potential.|Interaction with VTA1.|Interaction with VPS4B.				cell cycle|cell division|protein transport	cytosol|late endosome membrane	protein domain specific binding				0						GGGATCAAGTGTGACGGCAGA	0.587													5	8					0	0	3.59834e-05	0	0
SEMA6B	10501	broad.mit.edu	37	19	4548389	4548389	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:4548389A>G	uc010duc.1	-	12	1378	c.1340T>C	c.(1339-1341)CTG>CCG	p.L447P	SEMA6B_uc010dud.2_Missense_Mutation_p.L447P|SEMA6B_uc010xih.1_Missense_Mutation_p.L447P	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	447	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity	p.L447L(1)		skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAGAACCCAGGAAGACAAC	0.662													5	26					0	0	1.23904e-05	0	0
C3	718	broad.mit.edu	37	19	6682004	6682004	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:6682004T>C	uc002mfm.2	-	35	4360	c.4298A>G	c.(4297-4299)GAG>GGG	p.E1433G	C3_uc002mfl.2_Missense_Mutation_p.E169G	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1433	Properdin-binding.				complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TTTGTCCAGCTCATACTTGGA	0.562													3	115					0	0	0.00024832	0	0
ZNF626	199777	broad.mit.edu	37	19	20807460	20807460	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:20807460T>C	uc002npb.1	-	4	1373	c.1223A>G	c.(1222-1224)TAC>TGC	p.Y408C	ZNF626_uc002npc.1_Missense_Mutation_p.Y332C	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	408	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GTTAGAGGAGTACTTAAAAGC	0.408													3	48					0	0	6.4e-05	0	0
RINL	126432	broad.mit.edu	37	19	39361609	39361609	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:39361609C>G	uc002ojq.2	-	8	671	c.283G>C	c.(283-285)GGG>CGG	p.G95R	RINL_uc002ojr.1_5'Flank|RINL_uc010xuo.1_Missense_Mutation_p.G209R	NM_198445	NP_940847	Q6ZS11	RINL_HUMAN	Ras and Rab interactor-like	95							GTPase activator activity			pancreas(1)	1						CAGGAGACCCCGTGAGGCGCA	0.667													3	47					0	0	6.4e-05	0	0
IGFL3	388555	broad.mit.edu	37	19	46627194	46627194	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:46627194A>G	uc002pea.1	-	3	324	c.299T>C	c.(298-300)CTG>CCG	p.L100P		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	100						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		CTTCATACCCAGAACCCTCAA	0.542													7	120					0	0	0.000157383	0	0
ZNF347	84671	broad.mit.edu	37	19	53645054	53645054	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:53645054T>C	uc002qbb.1	-	5	1096	c.1027A>G	c.(1027-1029)AAA>GAA	p.K343E	ZNF347_uc010eql.1_Missense_Mutation_p.K344E|ZNF347_uc002qbc.1_Missense_Mutation_p.K344E	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	343					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		TTATAAGGTTTCTCTCCAGTG	0.383													5	75					0	0	8.12818e-05	0	0
DUXA	503835	broad.mit.edu	37	19	57666738	57666738	+	Silent	SNP	A	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr19:57666738A>T	uc002qoa.1	-	5	486	c.441T>A	c.(439-441)ATT>ATA	p.I147I		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	147	Homeobox 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		TTTGGAACCAAATCTAAGTGG	0.373													9	38					0	0	1.12685e-05	0	0
APOB	338	broad.mit.edu	37	2	21230281	21230282	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:21230281_21230282CC>AA	uc002red.2	-	26	9586_9587	c.9458_9459GG>TT	c.(9457-9459)TGG>TTT	p.W3153F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3153					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGTTTTTTCCCATAGAGAGAA	0.347													12	500					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21235400	21235401	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:21235400_21235401GG>TT	uc002red.2	-	26	4467_4468	c.4339_4340CC>AA	c.(4339-4341)CCA>AAA	p.P1447K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1447					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTTGAGACTGGGTTGTTTCCA	0.381													16	485					0	0	6.4e-05	0	0
EPAS1	2034	broad.mit.edu	37	2	46611733	46611733	+	Silent	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:46611733C>G	uc002ruv.2	+	16	3035	c.2547C>G	c.(2545-2547)CCC>CCG	p.P849P	EPAS1_uc002ruw.2_Silent_p.P315P	NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	849	CTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			TGAACGTGCCCGTGCTGGGAA	0.627													3	37					0	0	6.4e-05	0	0
FIGLA	344018	broad.mit.edu	37	2	71012684	71012685	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:71012684_71012685GG>TT	uc002she.1	-	3	476_477	c.471_472CC>AA	c.(469-474)ACCCAA>ACAAAA	p.Q158K		NM_001004311	NP_001004311	Q6QHK4	FIGLA_HUMAN	factor in the germline alpha	158					multicellular organismal development|oocyte development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcription factor complex	DNA binding|transcription factor binding				0						CTGATATGTTGGGTGATGTTTC	0.485													16	335					0	0	6.4e-05	0	0
DNAH6	1768	broad.mit.edu	37	2	84800621	84800621	+	Missense_Mutation	SNP	C	G	G	rs138935163		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:84800621C>G	uc010fgb.2	+	12	1971	c.1834C>G	c.(1834-1836)CGC>GGC	p.R612G	DNAH6_uc002soo.2_Missense_Mutation_p.R191G|DNAH6_uc002sop.2_Missense_Mutation_p.R191G	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	612	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TGAATCAGCCCGCATCTATGC	0.343													4	91					0	0	0.00024832	0	0
G6PC2	57818	broad.mit.edu	37	2	169764459	169764460	+	Missense_Mutation	DNP	CG	AT	AT	rs137857125	byFrequency	TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:169764459_169764460CG>AT	uc002uem.2	+	5	1030_1031	c.938_939CG>AT	c.(937-939)CCG>CAT	p.P313H	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Missense_Mutation_p.P197H	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	313	Helical; (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						CTCCAGATCCCGACTCACGAAG	0.45													6	138					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179429878	179429878	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:179429878C>A	uc010zfg.1	-	275	73501	c.73277G>T	c.(73276-73278)TGG>TTG	p.W24426L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.W18121L|TTN_uc010zfi.1_Missense_Mutation_p.W18054L|TTN_uc010zfj.1_Missense_Mutation_p.W17929L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25353							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGAGGTTCCCAAGATATGAC	0.453													6	72					8.12818e-05	0.00411422	8.12818e-05	1	0
ITGAV	3685	broad.mit.edu	37	2	187511592	187511592	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:187511592A>T	uc002upq.2	+	13	1615	c.1339A>T	c.(1339-1341)AAT>TAT	p.N447Y	ITGAV_uc010frs.2_Missense_Mutation_p.N411Y|ITGAV_uc010zfv.1_Missense_Mutation_p.N401Y	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	447	Potential.|FG-GAP 7.|Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		TATAGACAAAAATGGATATCC	0.398													8	14					0	0	1.12685e-05	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20483995	20483995	+	Silent	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr20:20483995C>T	uc002wrz.2	-	35	5351	c.5208G>A	c.(5206-5208)AAG>AAA	p.K1736K	RALGAPA2_uc010gcx.2_Silent_p.K1440K|RALGAPA2_uc010zsg.1_Silent_p.K1184K|RALGAPA2_uc002wsa.1_Silent_p.K508K	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1736	Rap-GAP.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GACCCCTTACCTTTTTGGTGA	0.517													16	23					0	0	9.7654e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	C	C	rs143761036	by1000genomes	TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr20:29625875T>C	uc010ztl.1	+	2	61	c.29T>C	c.(28-30)ATC>ACC	p.I10T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGTACAGAATCGCCCTGAAA	0.353													5	70					0	0	3.59834e-05	0	0
ELMO2	63916	broad.mit.edu	37	20	45022173	45022174	+	Nonsense_Mutation	DNP	CG	AT	AT	rs139415068		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr20:45022173_45022174CG>AT	uc002xrt.1	-	5	396_397	c.186_187CG>AT	c.(184-189)ACCGAA>ACATAA	p.E63*	ELMO2_uc002xru.1_Nonsense_Mutation_p.E63*|ELMO2_uc010zxr.1_Nonsense_Mutation_p.E63*|ELMO2_uc010zxs.1_5'UTR|ELMO2_uc002xrx.1_Nonsense_Mutation_p.E63*	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	63					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTAACCTGTTCGGTGATGTACA	0.465													6	171					0	0	6.4e-05	0	0
SLC13A3	64849	broad.mit.edu	37	20	45239110	45239111	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr20:45239110_45239111GG>TT	uc002xsf.1	-	3	553_554	c.515_516CC>AA	c.(514-516)CCC>CAA	p.P172Q	SLC13A3_uc010ghn.1_Missense_Mutation_p.P141Q|SLC13A3_uc010zxw.1_Missense_Mutation_p.P172Q|SLC13A3_uc002xsg.1_Missense_Mutation_p.P125Q|SLC13A3_uc010gho.1_Missense_Mutation_p.P125Q|SLC13A3_uc010zxx.1_Missense_Mutation_p.P74Q|SLC13A3_uc002xsi.3_Missense_Mutation_p.P125Q	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	172	Cytoplasmic (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	TCTCCTGGCTGGGGTCCTTTCG	0.53													8	204					0	0	6.4e-05	0	0
TPTE	7179	broad.mit.edu	37	21	10934960	10934960	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr21:10934960T>C	uc002yip.1	-	15	1201	c.833A>G	c.(832-834)CAC>CGC	p.H278R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.H260R|TPTE_uc002yir.1_Missense_Mutation_p.H240R|TPTE_uc010gkv.1_Missense_Mutation_p.H140R	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	278	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GACTCGATAGTGGTTTCGGTG	0.343													19	155					0	0	0.000175454	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299													6	98					0	0	3.59834e-05	0	0
KCNE1	3753	broad.mit.edu	37	21	35821640	35821641	+	Missense_Mutation	DNP	CG	AT	AT	rs150454912		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr21:35821640_35821641CG>AT	uc010gmp.2	-	2	722_723	c.292_293CG>AT	c.(292-294)CGG>ATG	p.R98M	KCNE1_uc002ytz.2_Missense_Mutation_p.R98M|KCNE1_uc010gmq.2_Missense_Mutation_p.R98M|KCNE1_uc010gmr.2_Missense_Mutation_p.R98M|KCNE1_uc010gms.2_Missense_Mutation_p.R98M|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	98	Cytoplasmic (Potential).		R -> W (in LQT5).		blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	CTCCAGGACCCGGGCCTGGACA	0.55													8	354					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	22	18844888	18844888	+	RNA	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:18844888A>G	uc002zoe.2	+	4		c.2142A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GCTCACGGAAATACAGCTTCA	0.587													3	43					0	0	3.59834e-05	0	0
CLTCL1	8218	broad.mit.edu	37	22	19178884	19178884	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:19178884T>C	uc002zpb.2	-	28	4330	c.4255A>G	c.(4255-4257)ATC>GTC	p.I1419V	CLTCL1_uc011agv.1_Missense_Mutation_p.I1419V|CLTCL1_uc011agw.1_Missense_Mutation_p.I1398V|CLTCL1_uc011agt.1_Missense_Mutation_p.I210V|CLTCL1_uc011agu.1_Missense_Mutation_p.I210V	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	1419	Involved in binding clathrin light chain (By similarity).|Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					AGGTCATTGATGAGCAGTGGT	0.527			T	?	ALCL								5	59					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	22	20721019	20721019	+	Silent	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:20721019C>T	uc011ahp.1	-	5	482	c.183G>A	c.(181-183)TTG>TTA	p.L61L	uc011ahq.1_Silent_p.L169L					SubName: Full=cDNA FLJ59031, highly similar to Ubl carboxyl-terminal hydrolase 18 (EC 3.1.2.-);																		GGGTCAGCTTCAAGACCTGAA	0.488													118	102					0	0	0.000147903	0	0
KLHL22	84861	broad.mit.edu	37	22	20825788	20825789	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:20825788_20825789CC>AA	uc002zsl.1	-	3	350_351	c.241_242GG>TT	c.(241-243)GGG>TTG	p.G81L	KLHL22_uc011ahr.1_Intron|KLHL22_uc002zsm.1_Missense_Mutation_p.G81L	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	81	BTB.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			CTTCAATCCCCCAGCAAACATT	0.465													13	738					0	0	6.4e-05	0	0
PI4KA	5297	broad.mit.edu	37	22	21080785	21080785	+	Silent	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21080785C>T	uc002zsz.3	-	42	5043	c.4812G>A	c.(4810-4812)AGG>AGA	p.R1604R	PI4KA_uc002zsy.3_Silent_p.R414R	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1604					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CCTTGTCGTACCTGAGGGCCT	0.597													11	50					0	0	6.40141e-05	0	0
PI4KA	5297	broad.mit.edu	37	22	21104201	21104202	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21104201_21104202GG>TT	uc002zsz.3	-	28	3291_3292	c.3060_3061CC>AA	c.(3058-3063)TCCCAC>TCAAAC	p.H1021N		NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1021					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			ACCTGCAGGTGGGACTTGGTGA	0.49													18	806					0	0	6.4e-05	0	0
SERPIND1	3053	broad.mit.edu	37	22	21133906	21133908	+	Missense_Mutation	TNP	CCC	AAA	AAA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21133906_21133908CCC>AAA	uc002ztb.1	+	2	373_375	c.306_308CCC>AAA	c.(304-309)TCCCCG>TCAAAG	p.P103K	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.P131K	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	103					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TGTCAGTTTCCCCGACAGACTCT	0.522													16	638					0	0	6.4e-05	0	0
PI4KA	5297	broad.mit.edu	37	22	21159354	21159355	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21159354_21159355CG>AT	uc002zsz.3	-	11	1324_1325	c.1093_1094CG>AT	c.(1093-1095)CGG>ATG	p.R365M	PI4KA_uc010gsq.1_Missense_Mutation_p.R423M	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	365					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			ATTGTGGATCCGGTCTGCGTCA	0.559													15	820					0	0	6.4e-05	0	0
PI4KA	5297	broad.mit.edu	37	22	21174860	21174861	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21174860_21174861CC>AA	uc002zsz.3	-	5	552_553	c.321_322GG>TT	c.(319-324)TTGGGG>TTTTGG	p.107_108LG>FW	PI4KA_uc010gsq.1_Missense_Mutation_p.165_166LG>FW	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	107_108					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TGGCACATCCCCAAGAGGACAT	0.347													18	855					0	0	6.4e-05	0	0
THAP7	80764	broad.mit.edu	37	22	21355586	21355587	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21355586_21355587GG>TT	uc002ztr.1	-	3	224_225	c.194_195CC>AA	c.(193-195)TCC>TAA	p.S65*	THAP7_uc002zts.1_Nonsense_Mutation_p.S65*|FLJ39582_uc002ztt.1_5'Flank|FLJ39582_uc002ztu.1_5'Flank|FLJ39582_uc002ztv.2_5'Flank	NM_001008695	NP_001008695	Q9BT49	THAP7_HUMAN	THAP domain containing 7 isoform 2	65	THAP-type.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck	C2H2 zinc finger domain binding|DNA binding|metal ion binding|protein N-terminus binding				0	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CAAAGTGTTTGGAGCAGAAGTA	0.663													25	901					0	0	6.4e-05	0	0
THAP7	80764	broad.mit.edu	37	22	21355637	21355638	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21355637_21355638GG>TT	uc002ztr.1	-	3	173_174	c.143_144CC>AA	c.(142-144)CCC>CAA	p.P48Q	THAP7_uc002zts.1_Missense_Mutation_p.P48Q|FLJ39582_uc002ztt.1_5'Flank|FLJ39582_uc002ztu.1_5'Flank|FLJ39582_uc002ztv.2_5'Flank	NM_001008695	NP_001008695	Q9BT49	THAP7_HUMAN	THAP domain containing 7 isoform 2	48	THAP-type.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck	C2H2 zinc finger domain binding|DNA binding|metal ion binding|protein N-terminus binding				0	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			CCTGGCCGCTGGGGTCCAGCCG	0.619													18	805					0	0	6.4e-05	0	0
P2RX6	9127	broad.mit.edu	37	22	21377584	21377585	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21377584_21377585GG>TT	uc010gsu.1	+	7	659_660	c.659_660GG>TT	c.(658-660)TGG>TTT	p.W220F	P2RX6_uc002ztz.2_Missense_Mutation_p.W194F|P2RX6_uc002zua.2_RNA|P2RX6_uc002zuc.1_RNA	NM_005446	NP_005437	O15547	P2RX6_HUMAN	purinergic receptor P2X6 isoform 1	220	Extracellular (Potential).				muscle contraction|protein homooligomerization	cell junction|cytoplasm|integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0						TTGGAGACCTGGGACCCCACCT	0.574													22	868					0	0	6.4e-05	0	0
POM121L8P	29797	broad.mit.edu	37	22	21648747	21648747	+	RNA	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21648747C>G	uc010gtd.2	+	7		c.4444C>G			uc002zuo.1_5'Flank	NR_024583				Homo sapiens cDNA FLJ76361 complete cds.												0						GACGTTGAAGCCTGCCTTCAG	0.637													3	1					0	0	8.12818e-05	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706652	26706652	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:26706652G>C	uc003acb.2	+	7	1687	c.1531G>C	c.(1531-1533)GGG>CGG	p.G511R	SEZ6L_uc003acc.2_Missense_Mutation_p.G511R|SEZ6L_uc011akc.1_Missense_Mutation_p.G511R|SEZ6L_uc003acd.2_Missense_Mutation_p.G511R|SEZ6L_uc011akd.1_Missense_Mutation_p.G511R|SEZ6L_uc003ace.2_Missense_Mutation_p.G511R|SEZ6L_uc003acf.1_Missense_Mutation_p.G284R|SEZ6L_uc010gvc.1_Missense_Mutation_p.G284R	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	511	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GGTTCACAGCGGGCAGACCAA	0.552													4	80					0	0	3.59834e-05	0	0
SRRD	402055	broad.mit.edu	37	22	26884183	26884184	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:26884183_26884184GG>TT	uc010gve.2	+	3	446_447	c.439_440GG>TT	c.(439-441)GGG>TTG	p.G147L	SRRD_uc003acp.3_Missense_Mutation_p.G140L	NM_001013694	NP_001013716	Q9UH36	SRR1L_HUMAN	SRR1 domain containing	147					rhythmic process						0						TTACGGCATTGGGAACTTTGCC	0.455													13	429					0	0	6.4e-05	0	0
TFIP11	24144	broad.mit.edu	37	22	26892039	26892040	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:26892039_26892040CC>AA	uc003acr.2	-	11	2222_2223	c.1848_1849GG>TT	c.(1846-1851)CTGGGG>CTTTGG	p.G617W	TFIP11_uc003acq.2_5'Flank|TFIP11_uc003acs.2_Missense_Mutation_p.G617W|TFIP11_uc003act.2_Missense_Mutation_p.G617W	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	617					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						TTATCCTTACCCAGCTTGGGCA	0.505													15	809					0	0	6.4e-05	0	0
DDX17	10521	broad.mit.edu	37	22	38890920	38890921	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:38890920_38890921GG>TT	uc003avy.3	-	7	1114_1115	c.1011_1012CC>AA	c.(1009-1014)CCCCAG>CCAAAG	p.Q338K	DDX17_uc003avx.3_Missense_Mutation_p.Q338K|DDX17_uc011anu.1_Missense_Mutation_p.Q251K	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	259	Helicase ATP-binding.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					TTACGGATCTGGGGTTCAAACC	0.416													13	520					0	0	6.4e-05	0	0
DMC1	11144	broad.mit.edu	37	22	38917699	38917700	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:38917699_38917700CC>AA	uc003avz.1	-	13	1041_1042	c.866_867GG>TT	c.(865-867)GGG>GTT	p.G289V	DMC1_uc011anv.1_Missense_Mutation_p.G234V	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	289					reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					GAATGTGTCCCCCAATGGGTTT	0.376								Homologous_recombination					14	583					0	0	6.4e-05	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681606	44681607	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:44681606_44681607CC>AA	uc003bet.2	-	4	433_434	c.300_301GG>TT	c.(298-303)TTGGGA>TTTTGA	p.100_101LG>F*		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	100_101	Helical; (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				ATCCACACTCCCAACAAGGCGG	0.52													12	442					0	0	6.4e-05	0	0
SRGAP3	9901	broad.mit.edu	37	3	9146506	9146506	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:9146506G>C	uc003brf.1	-	3	957	c.281C>G	c.(280-282)TCG>TGG	p.S94W	SRGAP3_uc003brg.1_Missense_Mutation_p.S94W|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Missense_Mutation_p.S94W	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	94					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GTTCACAGGCGAGAGGAGGTA	0.468			T	RAF1	pilocytic astrocytoma								3	38					0	0	1.23904e-05	0	0
TSEN2	80746	broad.mit.edu	37	3	12558133	12558134	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:12558133_12558134GG>TT	uc003bxc.2	+	7	1320_1321	c.933_934GG>TT	c.(931-936)CTGGGA>CTTTGA	p.G312*	TSEN2_uc003bwy.2_Nonsense_Mutation_p.G312*|TSEN2_uc003bwz.2_Nonsense_Mutation_p.G253*|TSEN2_uc003bxa.2_Nonsense_Mutation_p.G286*|TSEN2_uc011auq.1_Nonsense_Mutation_p.G286*|TSEN2_uc003bxb.2_Nonsense_Mutation_p.G312*|TSEN2_uc011aur.1_Nonsense_Mutation_p.G221*	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	312					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity	p.G312R(1)		central_nervous_system(1)	1						TCTATGCTCTGGGATGTTTAAG	0.337													12	569					0	0	6.4e-05	0	0
BSN	8927	broad.mit.edu	37	3	49693606	49693606	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:49693606T>C	uc003cxe.3	+	5	6731	c.6617T>C	c.(6616-6618)CTG>CCG	p.L2206P		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2206					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCTGCAACACTGCCCATCACC	0.582													11	11					0	0	3.86212e-05	0	0
RBM6	10180	broad.mit.edu	37	3	50106193	50106193	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:50106193G>A	uc003cyc.2	+	18	3147	c.3014G>A	c.(3013-3015)CGA>CAA	p.R1005Q	RBM6_uc003cyd.2_Missense_Mutation_p.R483Q|RBM6_uc003cye.2_Missense_Mutation_p.R483Q|RBM6_uc011bdi.1_Missense_Mutation_p.R347Q|RBM6_uc010hld.1_RNA|RBM6_uc010hle.1_RNA|RBM6_uc010hlf.1_RNA	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	1005					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		AGGAGAGAACGAGAGGTAAAC	0.433													13	36					0	0	3.45872e-05	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64617564	64617565	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:64617564_64617565CG>AT	uc003dmg.2	-	15	2244_2245	c.2212_2213CG>AT	c.(2212-2214)CGG>ATG	p.R738M	ADAMTS9_uc011bfo.1_Missense_Mutation_p.R710M|ADAMTS9_uc003dmh.1_Missense_Mutation_p.R567M|ADAMTS9_uc003dmk.1_Missense_Mutation_p.R738M	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	738	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TTTATCTCTCCGGGCTTTTGAG	0.337													8	484					0	0	6.4e-05	0	0
SENP7	57337	broad.mit.edu	37	3	101044851	101044851	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:101044851C>G	uc003dut.2	-	24	3200	c.3089G>C	c.(3088-3090)CGG>CCG	p.R1030P	SENP7_uc003duu.2_Missense_Mutation_p.R965P|SENP7_uc003duv.2_Missense_Mutation_p.R997P|SENP7_uc003duw.2_Missense_Mutation_p.R964P|SENP7_uc003dux.2_Missense_Mutation_p.R866P|SENP7_uc003dus.2_Missense_Mutation_p.R218P	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	1030	Protease.				proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						AATATCTTCCCGTTTGGTCTT	0.373													3	62					0	0	0.00024832	0	0
ZBTB20	26137	broad.mit.edu	37	3	114058118	114058118	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:114058118G>A	uc003ebi.2	-	5	2140	c.1960C>T	c.(1960-1962)CGC>TGC	p.R654C	ZBTB20_uc003ebj.2_Missense_Mutation_p.R581C|ZBTB20_uc010hqp.2_Missense_Mutation_p.R581C|ZBTB20_uc003ebk.2_Missense_Mutation_p.R581C|ZBTB20_uc003ebl.2_Missense_Mutation_p.R581C|ZBTB20_uc003ebm.2_Missense_Mutation_p.R581C|ZBTB20_uc003ebn.2_Missense_Mutation_p.R581C	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	654	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CGGTGGAGGCGCATGTGCACG	0.552													35	74					0	0	7.51294e-05	0	0
POLQ	10721	broad.mit.edu	37	3	121207984	121207984	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:121207984G>C	uc003eee.3	-	16	3923	c.3794C>G	c.(3793-3795)CCC>CGC	p.P1265R	POLQ_uc003eed.2_Missense_Mutation_p.P437R	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1265					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TACTTCACTGGGTATCACAGT	0.343								DNA_polymerases_(catalytic_subunits)					4	189					0	0	3.59834e-05	0	0
TXNDC6	347736	broad.mit.edu	37	3	138033207	138033208	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:138033207_138033208GG>TT	uc003esg.2	-	6	454_455	c.426_427CC>AA	c.(424-429)TCCCAT>TCAAAT	p.H143N	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.H58N|TXNDC6_uc003ese.1_Missense_Mutation_p.H82N	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	143					cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						TTCTTTCCATGGGAAACACATT	0.347													11	466					0	0	6.4e-05	0	0
ATP13A3	79572	broad.mit.edu	37	3	194151724	194151724	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:194151724G>C	uc003fty.3	-	23	2974	c.2572C>G	c.(2572-2574)CGT>GGT	p.R858G	ATP13A3_uc003ftz.1_Missense_Mutation_p.R564G	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	858					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		GGTGCCATACGGGCAAACACG	0.373													3	60					0	0	1.23904e-05	0	0
ZNF721	170960	broad.mit.edu	37	4	435871	435871	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:435871G>C	uc003gag.2	-	3	3076	c.2385C>G	c.(2383-2385)AGC>AGG	p.S795R	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.S827R|ZNF721_uc010ibe.2_Missense_Mutation_p.S783R	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	795						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GTTTAGCAAAGCTTGAGGATG	0.368													15	40					0	0	3.45872e-05	0	0
WHSC1	7468	broad.mit.edu	37	4	1957789	1957790	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:1957789_1957790CC>AA	uc003gdz.3	+	15	2931_2932	c.2755_2756CC>AA	c.(2755-2757)CCT>AAT	p.P919N	WHSC1_uc003geb.3_Missense_Mutation_p.P919N|WHSC1_uc003gec.3_Missense_Mutation_p.P919N|WHSC1_uc003ged.3_Missense_Mutation_p.P919N|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Missense_Mutation_p.P138N|WHSC1_uc011bvh.1_Intron|WHSC1_uc010icf.2_Missense_Mutation_p.P267N	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	919	PWWP 2.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		TGGAGAATTCCCTGTGTTTTTC	0.47			T	IGH@	MM								9	301					0	0	6.4e-05	0	0
GRK4	2868	broad.mit.edu	37	4	3039147	3039148	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:3039147_3039148CG>AT	uc003ggn.1	+	14	1909_1910	c.1454_1455CG>AT	c.(1453-1455)TCG>TAT	p.S485Y	GRK4_uc003ggo.1_Missense_Mutation_p.S485Y|GRK4_uc003ggp.1_Missense_Mutation_p.S453Y|GRK4_uc003ggq.1_Missense_Mutation_p.S453Y	NM_182982	NP_892027	P32298	GRK4_HUMAN	G protein-coupled receptor kinase 4 isoform	485	AGC-kinase C-terminal.					cell cortex	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GAGCAGTTCTCGGTGGTGAAAG	0.535											OREG0016045	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	127					0	0	6.4e-05	0	0
KCNIP4	80333	broad.mit.edu	37	4	20736327	20736327	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:20736327C>G	uc003gqe.2	-	5	494	c.410G>C	c.(409-411)CGG>CCG	p.R137P	KCNIP4_uc003gqf.1_Missense_Mutation_p.R133P|KCNIP4_uc003gqg.1_Missense_Mutation_p.R92P|KCNIP4_uc003gqh.1_Missense_Mutation_p.R129P|KCNIP4_uc003gqi.1_Missense_Mutation_p.R92P|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Missense_Mutation_p.R134P|KCNIP4_uc003gqd.3_Missense_Mutation_p.R117P	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	154	EF-hand 2.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				TACTGTCCCCCGGAGCAAAAT	0.308													4	210					0	0	0.00024832	0	0
KIT	3815	broad.mit.edu	37	4	55594221	55594221	+	Missense_Mutation	SNP	A	G	G	rs121913512		TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:55594221A>G	uc010igr.2	+	13	2011	c.1924A>G	c.(1924-1926)AAA>GAA	p.K642E	KIT_uc010igs.2_Missense_Mutation_p.K638E|KIT_uc010igt.1_Missense_Mutation_p.K91E	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	642	Protein kinase.|Cytoplasmic (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.K642E(55)|p.K642Q(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GTCTGAACTCAAAGTCCTGAG	0.438		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				311	61					0	0	0.000147903	0	0
SLC4A4	8671	broad.mit.edu	37	4	72420881	72420881	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:72420881G>C	uc003hfy.2	+	21	2836	c.2719G>C	c.(2719-2721)GGT>CGT	p.G907R	SLC4A4_uc010iic.2_Missense_Mutation_p.G907R|SLC4A4_uc010iib.2_Missense_Mutation_p.G823R|SLC4A4_uc003hfz.2_Missense_Mutation_p.G907R|SLC4A4_uc003hgc.3_Missense_Mutation_p.G863R|SLC4A4_uc010iid.2_Missense_Mutation_p.G111R	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	907	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			TGTACTCTATGGTGTGTTCCT	0.328													6	309					0	0	8.12818e-05	0	0
FAT4	79633	broad.mit.edu	37	4	126371456	126371456	+	Silent	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:126371456T>C	uc003ifj.3	+	9	9285	c.9285T>C	c.(9283-9285)AGT>AGC	p.S3095S	FAT4_uc011cgp.1_Silent_p.S1393S|FAT4_uc003ifi.1_Silent_p.S573S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3095	Cadherin 30.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCCACATGAGTGCAACCATCC	0.443													18	38					0	0	0.000132079	0	0
TLL1	7092	broad.mit.edu	37	4	166916261	166916261	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:166916261A>G	uc003irh.1	+	5	1210	c.563A>G	c.(562-564)CAC>CGC	p.H188R	TLL1_uc011cjn.1_Missense_Mutation_p.H188R|TLL1_uc011cjo.1_Missense_Mutation_p.H12R	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	188	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGGGAAAAGCACACATGTGTG	0.443													53	102					0	0	0.000147903	0	0
SEMA5A	9037	broad.mit.edu	37	5	9044667	9044668	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:9044667_9044668CC>AA	uc003jek.2	-	22	3634_3635	c.2922_2923GG>TT	c.(2920-2925)GTGGGG>GTTTGG	p.G975W		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	975	Helical; (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CTGCTCAGCCCCACGGCGATCA	0.54													16	572					0	0	6.4e-05	0	0
SEMA5A	9037	broad.mit.edu	37	5	9202244	9202245	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:9202244_9202245CG>AT	uc003jek.2	-	9	1466_1467	c.754_755CG>AT	c.(754-756)CGG>ATG	p.R252M		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	252	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						CTTGCACACCCGGGCAGCTCTG	0.51													16	583					0	0	6.4e-05	0	0
CTNND2	1501	broad.mit.edu	37	5	11098853	11098854	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:11098853_11098854CC>AA	uc003jfa.1	-	15	2615_2616	c.2470_2471GG>TT	c.(2470-2472)GGA>TTA	p.G824L	CTNND2_uc010itt.2_Missense_Mutation_p.G733L|CTNND2_uc011cmy.1_Missense_Mutation_p.G487L|CTNND2_uc011cmz.1_Missense_Mutation_p.G391L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.G391L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	824					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGGTCCTACTCCATCCCACTGG	0.47													10	346					0	0	6.4e-05	0	0
CTNND2	1501	broad.mit.edu	37	5	11110978	11110979	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:11110978_11110979GG>TT	uc003jfa.1	-	14	2599_2600	c.2454_2455CC>AA	c.(2452-2457)TCCCAA>TCAAAA	p.Q819K	CTNND2_uc010itt.2_Missense_Mutation_p.Q728K|CTNND2_uc011cmy.1_Missense_Mutation_p.Q482K|CTNND2_uc011cmz.1_Missense_Mutation_p.Q386K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.Q386K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	819					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ACCTGATCTTGGGATTTCTTTT	0.5													19	874					0	0	6.4e-05	0	0
CDH10	1008	broad.mit.edu	37	5	24535880	24535881	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:24535880_24535881CC>AA	uc003jgr.1	-	4	909_910	c.577_578GG>TT	c.(577-579)GGG>TTG	p.G193L	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	193	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GGCGCTGTTCCCATATGAAGGG	0.465										HNSCC(23;0.051)			23	636					0	0	6.4e-05	0	0
PDZD2	23037	broad.mit.edu	37	5	32053950	32053951	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:32053950_32053951CC>AA	uc003jhl.2	+	10	2249_2250	c.1861_1862CC>AA	c.(1861-1863)CCA>AAA	p.P621K	PDZD2_uc003jhm.2_Missense_Mutation_p.P621K|PDZD2_uc011cnx.1_Missense_Mutation_p.P447K	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	621	PDZ 3.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GACCATCTTCCCAAATGGATCA	0.49													13	410					0	0	6.4e-05	0	0
SPEF2	79925	broad.mit.edu	37	5	35740106	35740107	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:35740106_35740107GG>TT	uc003jjo.2	+	22	3260_3261	c.3149_3150GG>TT	c.(3148-3150)AGG>ATT	p.R1050I	SPEF2_uc003jjp.1_Missense_Mutation_p.R536I	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1050					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGCATCTGAGGGAAGACCAGC	0.332													17	876					0	0	6.4e-05	0	0
SPEF2	79925	broad.mit.edu	37	5	35759742	35759743	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:35759742_35759743CC>AA	uc003jjo.2	+	25	3652_3653	c.3541_3542CC>AA	c.(3541-3543)CCA>AAA	p.P1181K	SPEF2_uc003jjp.1_Missense_Mutation_p.P667K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1181					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGTAAAATCCCAGTAGAGGAC	0.386													16	874					0	0	6.4e-05	0	0
SPEF2	79925	broad.mit.edu	37	5	35800111	35800112	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:35800111_35800112CC>AA	uc003jjo.2	+	34	4983_4984	c.4872_4873CC>AA	c.(4870-4875)CCCCAG>CCAAAG	p.Q1625K	SPEF2_uc003jjp.1_Missense_Mutation_p.Q1111K|SPEF2_uc003jjr.2_Missense_Mutation_p.Q680K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1625					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGATCCACCCCAGCTTGACTA	0.431													16	840					0	0	6.4e-05	0	0
UGT3A1	133688	broad.mit.edu	37	5	35955843	35955844	+	Missense_Mutation	DNP	CG	AT	AT	rs61734803	by1000genomes	TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:35955843_35955844CG>AT	uc003jjv.1	-	6	1355_1356	c.1198_1199CG>AT	c.(1198-1200)CGA>ATA	p.R400I	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.R400I|UGT3A1_uc011cor.1_Missense_Mutation_p.R366I	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	400	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGCTACTACTCGGACCATGTTT	0.48													11	878					0	0	6.4e-05	0	0
UGT3A1	133688	broad.mit.edu	37	5	35955883	35955884	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:35955883_35955884CC>AA	uc003jjv.1	-	6	1315_1316	c.1158_1159GG>TT	c.(1156-1161)GTGGGA>GTTTGA	p.G387*	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Nonsense_Mutation_p.G387*|UGT3A1_uc011cor.1_Nonsense_Mutation_p.G353*	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	387	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACTGGTAATCCCACCATGGGCA	0.505													17	815					0	0	6.4e-05	0	0
SLC1A3	6507	broad.mit.edu	37	5	36674161	36674162	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:36674161_36674162CC>AA	uc003jkj.3	+	5	1011_1012	c.535_536CC>AA	c.(535-537)CCT>AAT	p.P179N	SLC1A3_uc011cox.1_Missense_Mutation_p.P72N|SLC1A3_uc010iuy.2_Missense_Mutation_p.P179N	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	179	Extracellular (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GAACATGTTCCCTCCAAATCTG	0.361													12	472					0	0	6.4e-05	0	0
SLC1A3	6507	broad.mit.edu	37	5	36686347	36686347	+	Silent	SNP	C	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:36686347C>A	uc003jkj.3	+	10	2081	c.1605C>A	c.(1603-1605)CCC>CCA	p.P535P	SLC1A3_uc011cox.1_Silent_p.P428P|SLC1A3_uc010iuy.2_Silent_p.P490P	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	535					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CTGAGAAACCCATCGACAGTG	0.363													18	465					0.000175454	0.00877582	0.000175454	1	0
NIPBL	25836	broad.mit.edu	37	5	36962253	36962254	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:36962253_36962254GG>TT	uc003jkl.3	+	6	986_987	c.487_488GG>TT	c.(487-489)GGG>TTG	p.G163L	NIPBL_uc003jkk.3_Missense_Mutation_p.G163L|NIPBL_uc003jkm.1_Missense_Mutation_p.G42L	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	163					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			GACAAGCTCTGGGAACAGATTT	0.426													21	734					0	0	6.4e-05	0	0
NIPBL	25836	broad.mit.edu	37	5	37045583	37045584	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:37045583_37045584CC>AA	uc003jkl.3	+	37	6881_6882	c.6382_6383CC>AA	c.(6382-6384)CCA>AAA	p.P2128K	NIPBL_uc003jkk.3_Missense_Mutation_p.P2128K	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2128					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CCAAGAGGACCCAAATAACACT	0.312													13	625					0	0	6.4e-05	0	0
NUP155	9631	broad.mit.edu	37	5	37292045	37292046	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:37292045_37292046CC>AA	uc003jku.1	-	35	4250_4251	c.4132_4133GG>TT	c.(4132-4134)GGG>TTG	p.G1378L	NUP155_uc003jkt.1_Missense_Mutation_p.G1319L|NUP155_uc010iuz.1_Missense_Mutation_p.G1314L	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	1378					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTTAAAATTCCCAGTGATGGCT	0.381													11	335					0	0	6.4e-05	0	0
HCN1	348980	broad.mit.edu	37	5	45262698	45262699	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:45262698_45262699CG>AT	uc003jok.2	-	8	2022_2023	c.1997_1998CG>AT	c.(1996-1998)CCG>CAT	p.P666H		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	666	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTGTGTACACCGGTGGAGATTG	0.574													13	404					0	0	6.4e-05	0	0
HMGCR	3156	broad.mit.edu	37	5	74643039	74643040	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:74643039_74643040GG>TT	uc003kdp.2	+	6	617_618	c.461_462GG>TT	c.(460-462)AGG>ATT	p.R154I	HMGCR_uc011cst.1_Missense_Mutation_p.R174I|HMGCR_uc003kdq.2_Missense_Mutation_p.R154I|HMGCR_uc010izn.1_5'UTR	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	154					cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GATGAAGTAAGGGAAAATATTG	0.366													15	539					0	0	6.4e-05	0	0
SLC22A4	6583	broad.mit.edu	37	5	131670426	131670427	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:131670426_131670427GG>TT	uc003kwq.2	+	7	1227_1228	c.1062_1063GG>TT	c.(1060-1065)GTGGGT>GTTTGT	p.G355C	uc003kwr.3_Intron	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	355	Helical; Name=7; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	TGACCTCAGTGGGTTACTTTGC	0.396													17	489					0	0	6.4e-05	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515772	140515773	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:140515772_140515773CG>AT	uc003liq.2	+	1	973_974	c.756_757CG>AT	c.(754-759)CCCGAG>CCATAG	p.E253*		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	253	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TACAGGTGCCCGAGAACAGCCC	0.5													11	255					0	0	6.4e-05	0	0
NMUR2	56923	broad.mit.edu	37	5	151771827	151771827	+	Silent	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:151771827A>G	uc003luv.2	-	4	1339	c.1173T>C	c.(1171-1173)TCT>TCC	p.S391S		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	391	Cytoplasmic (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CTGGGAGGTGAGAGTTGTGCA	0.478													8	293					0	0	2.17888e-05	0	0
C5orf25	375484	broad.mit.edu	37	5	175717629	175717630	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:175717629_175717630GG>TT	uc003mds.3	+	4	1452_1453	c.1045_1046GG>TT	c.(1045-1047)GGA>TTA	p.G349L	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Missense_Mutation_p.G368L|uc003mdu.1_Missense_Mutation_p.G260L			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	349	Pro-rich.										0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TCACTTACCAGGAGACAGGCCT	0.525													15	664					0	0	6.4e-05	0	0
GRK6	2870	broad.mit.edu	37	5	176863256	176863256	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:176863256C>G	uc011dfz.1	+	12	1400	c.1240C>G	c.(1240-1242)CCG>GCG	p.P414A	GRK6_uc003mgp.2_Missense_Mutation_p.P414A|GRK6_uc003mgq.2_Missense_Mutation_p.P414A|GRK6_uc003mgs.1_Missense_Mutation_p.P384A	NM_002082	NP_002073	P43250	GRK6_HUMAN	G protein-coupled receptor kinase 6 isoform B	414	Protein kinase.				regulation of G-protein coupled receptor protein signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)|stomach(1)|breast(1)	3	all_cancers(89;1.15e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCGCTTTTCCCCGCAGGCCCG	0.637													4	131					0	0	0.00024832	0	0
MAPK9	5601	broad.mit.edu	37	5	179676014	179676015	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:179676014_179676015CG>AT	uc003mls.3	-	6	845_846	c.574_575CG>AT	c.(574-576)CGG>ATG	p.R192M	MAPK9_uc003mlt.3_Missense_Mutation_p.R192M|MAPK9_uc010jlc.2_Missense_Mutation_p.R192M|MAPK9_uc003mlv.3_Missense_Mutation_p.R192M|MAPK9_uc011dgx.1_Missense_Mutation_p.R192M	NM_002752	NP_002743	P45984	MK09_HUMAN	mitogen-activated protein kinase 9 isoform JNK2	192	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|protein binding|protein binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)	4	all_cancers(89;6.54e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	all_cancers(40;0.0236)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTCGGGCGCCCGGTAGTACCGT	0.55													9	366					0	0	6.4e-05	0	0
BCKDHB	594	broad.mit.edu	37	6	80838886	80838886	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr6:80838886G>T	uc003pjd.2	+	3	350	c.283G>T	c.(283-285)GGT>TGT	p.G95C	BCKDHB_uc003pje.2_Missense_Mutation_p.G95C	NM_000056	NP_000047	P21953	ODBB_HUMAN	branched chain keto acid dehydrogenase E1 beta	95					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|carboxy-lyase activity|protein binding				0		all_cancers(76;1.38e-05)|Acute lymphoblastic leukemia(125;1.15e-05)|all_hematologic(105;0.00118)|all_epithelial(107;0.0149)		BRCA - Breast invasive adenocarcinoma(397;0.0291)		AGTAATATTTGGTGAAGATGT	0.254													9	209					0.000151284	0.00761195	0.000151284	1	0
ASCC3	10973	broad.mit.edu	37	6	101127554	101127554	+	Silent	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr6:101127554A>G	uc003pqk.2	-	14	2555	c.2226T>C	c.(2224-2226)TGT>TGC	p.C742C	ASCC3_uc011eai.1_Silent_p.C644C	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	742	Helicase C-terminal 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		GAATATGGCCACAATTTTTTG	0.368													5	84					0	0	1.23904e-05	0	0
JAZF1	221895	broad.mit.edu	37	7	28031544	28031545	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:28031544_28031545GG>TT	uc003szn.2	-	2	412_413	c.171_172CC>AA	c.(169-174)GCCCTG>GCAATG	p.L58M	JAZF1_uc003szm.2_Translation_Start_Site	NM_175061	NP_778231	Q86VZ6	JAZF1_HUMAN	JAZF zinc finger 1	58					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcriptional repressor complex	nucleic acid binding|transcription corepressor activity|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131						ATGTAACTCAGGGCAACATAGG	0.312			T	SUZ12	endometrial stromal tumours								16	696					0	0	6.4e-05	0	0
TARP	445347	broad.mit.edu	37	7	38313210	38313211	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:38313210_38313211GG>TT	uc003tge.1	-	4	781_782	c.404_405CC>AA	c.(403-405)CCC>CAA	p.P135Q	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_Intron|TARP_uc010kxi.1_Intron|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						GCTTTGTTCCGGGACCAAATAC	0.252													8	169					0	0	6.4e-05	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658501	72658501	+	Silent	SNP	T	C	C			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:72658501T>C	uc003txs.1	-	13	1411	c.483A>G	c.(481-483)GCA>GCG	p.A161A	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tctcatcgattgcgatagaat	0													4	49					0	0	1.23904e-05	0	0
MAGI2	9863	broad.mit.edu	37	7	77973259	77973259	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:77973259C>T	uc003ugx.2	-	9	1498	c.1244G>A	c.(1243-1245)CGG>CAG	p.R415Q	MAGI2_uc003ugy.2_Missense_Mutation_p.R415Q|MAGI2_uc010ldx.1_Missense_Mutation_p.R24Q|MAGI2_uc010ldy.1_Missense_Mutation_p.R24Q|MAGI2_uc011kgr.1_Missense_Mutation_p.R247Q|MAGI2_uc011kgs.1_Missense_Mutation_p.R252Q	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	415						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGATGCATCCCGGGTGAAGAG	0.453													8	36					0	0	2.17888e-05	0	0
COPG2	26958	broad.mit.edu	37	7	130295969	130295970	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:130295969_130295970CC>AA	uc003vqh.1	-	9	681_682	c.591_592GG>TT	c.(589-594)TTGGGA>TTTTGA	p.197_198LG>F*		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	197_198					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					TACAGGACTCCCAATGCATGGT	0.342													14	409					0	0	6.4e-05	0	0
EPHA1	2041	broad.mit.edu	37	7	143104715	143104716	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr7:143104715_143104716GG>TT	uc003wcz.2	-	2	225_226	c.138_139CC>AA	c.(136-141)CCCCCA>CCAACA	p.P47T	uc003wda.2_5'Flank	NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	47	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CCATCTTTTGGGGGATCCAGCA	0.55													10	239					0	0	6.4e-05	0	0
AGPAT5	55326	broad.mit.edu	37	8	6599266	6599266	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr8:6599266C>G	uc003wqo.2	+	5	892	c.580C>G	c.(580-582)CAA>GAA	p.Q194E	AGPAT5_uc011kwm.1_Intron	NM_018361	NP_060831	Q9NUQ2	PLCE_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 5	194					phospholipid biosynthetic process	integral to membrane|mitochondrion	1-acylglycerol-3-phosphate O-acyltransferase activity				0			STAD - Stomach adenocarcinoma(24;0.0578)	READ - Rectum adenocarcinoma(644;0.156)|COAD - Colon adenocarcinoma(149;0.191)		ATTTGCTGCCCAACGTGGTAA	0.338													4	194					0	0	1.23904e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95906295	95906296	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr8:95906295_95906296GG>TT	uc003yhc.2	-	3	175_176	c.66_67CC>AA	c.(64-69)CCCCAA>CCAAAA	p.Q23K	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.Q23K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	23					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TGGGCTTCTTGGGGGGATTCCG	0.46													13	489					0	0	6.4e-05	0	0
KIAA0020	9933	broad.mit.edu	37	9	2812352	2812352	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr9:2812352C>G	uc003zhp.1	-	14	1376	c.1280G>C	c.(1279-1281)AGT>ACT	p.S427T	KIAA0020_uc010mhc.1_Missense_Mutation_p.S426T|KIAA0020_uc003zhq.1_Missense_Mutation_p.S426T	NM_014878	NP_055693	Q15397	K0020_HUMAN	KIAA0020 protein	427	Pumilio 6.|PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding			ovary(1)	1				GBM - Glioblastoma multiforme(50;0.0319)		AGGCAATGAACTGATAATTTC	0.333													3	30					0	0	6.4e-05	0	0
TLE4	7091	broad.mit.edu	37	9	82321762	82321762	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr9:82321762C>G	uc004ald.2	+	11	1712	c.863C>G	c.(862-864)TCT>TGT	p.S288C	TLE4_uc004alc.2_Missense_Mutation_p.S295C|TLE4_uc010mpr.2_Missense_Mutation_p.S174C|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.S263C|TLE4_uc010mps.2_Intron|TLE4_uc004alf.2_Missense_Mutation_p.S234C	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						AGTCCAGCCTCTATTGCATCT	0.522													51	88					0	0	0.000147903	0	0
TLE1	7088	broad.mit.edu	37	9	84267130	84267130	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr9:84267130C>G	uc004aly.2	-	6	812	c.371G>C	c.(370-372)GGG>GCG	p.G124A	TLE1_uc004alz.2_Missense_Mutation_p.G124A|TLE1_uc011lsr.1_Missense_Mutation_p.G124A|TLE1_uc004ama.1_Missense_Mutation_p.G124A|TLE1_uc011lss.1_Missense_Mutation_p.G124A|TLE1_uc004amb.2_Missense_Mutation_p.G124A	NM_005077	NP_005068	Q04724	TLE1_HUMAN	transducin-like enhancer protein 1	124	Gln-rich.				negative regulation of Wnt receptor signaling pathway|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway		transcription factor binding			ovary(1)|skin(1)	2						GCCACGTACCCCGATGATGGC	0.408													4	127					0	0	0.00024832	0	0
CASK	8573	broad.mit.edu	37	X	41646527	41646527	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chrX:41646527C>G	uc004dfl.3	-	3	228	c.182G>C	c.(181-183)CGG>CCG	p.R61P	CASK_uc004dfm.3_Missense_Mutation_p.R61P|CASK_uc004dfn.3_Missense_Mutation_p.R61P	NM_003688	NP_003679	O14936	CSKP_HUMAN	calcium/calmodulin-dependent serine protein	61	Protein kinase.				cell adhesion	actin cytoskeleton|cytoplasm|nucleus|plasma membrane	ATP binding|calmodulin binding|guanylate kinase activity|protein serine/threonine kinase activity			ovary(3)|lung(2)|stomach(1)	6						ACTGGCTTCCCGCTTTAGATC	0.363													4	57					0	0	0.00024832	0	0
ZNF711	7552	broad.mit.edu	37	X	84526177	84526177	+	Silent	SNP	A	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chrX:84526177A>G	uc004eeo.2	+	9	1976	c.1629A>G	c.(1627-1629)GCA>GCG	p.A543A	ZNF711_uc004eep.2_Silent_p.A543A|ZNF711_uc004eeq.2_Silent_p.A589A|ZNF711_uc011mqy.1_Silent_p.A142A	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	543	C2H2-type 5.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TCAGGTGTGCAGATCAATCAA	0.403													7	8					0	0	0.000157383	0	0
PLP1	5354	broad.mit.edu	37	X	103041649	103041649	+	Silent	SNP	C	G	G			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chrX:103041649C>G	uc010nov.2	+	4	727	c.447C>G	c.(445-447)CCC>CCG	p.P149P	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Silent_p.P149P|PLP1_uc004elj.2_Intron|PLP1_uc011msf.1_Silent_p.P94P|PLP1_uc010now.1_Silent_p.P153P|PLP1_uc010nox.2_Silent_p.P103P	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	149	Cytoplasmic (Probable).		Missing (in HLD1).		cell death|synaptic transmission	integral to membrane				ovary(1)	1						TAGGACATCCCGACAAGGTGA	0.562													3	43					0	0	0.00024832	0	0
AHCTF1	25909	broad.mit.edu	37	1	247019110	247019111	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr1:247019110_247019111delAC	uc001ibu.1	-	30	4282_4283	c.4275_4276delGT	c.(4273-4278)AAGTCCfs	p.K1425fs	AHCTF1_uc001ibv.1_Frame_Shift_Del_p.K1434fs|AHCTF1_uc009xgs.1_Frame_Shift_Del_p.K286fs|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1425_1426	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GGTACCTTGGACTTCTGGGTGA	0.371													33	86	---	---	---	---					
FLJ35220	284131	broad.mit.edu	37	17	78397370	78397370	+	Frame_Shift_Del	DEL	G	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr17:78397370delG	uc002jym.1	+	5	482	c.454delG	c.(454-456)GGGfs	p.G152fs	FLJ35220_uc002jyk.2_Frame_Shift_Del_p.G107fs|FLJ35220_uc002jyl.1_Frame_Shift_Del_p.G107fs|FLJ35220_uc002jyn.2_5'UTR	NM_173627	NP_775898	Q8N8Q3	ENDOV_HUMAN	hypothetical protein LOC284131 isoform 1	152					DNA repair		endodeoxyribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			GCCGTGTGTTGGGGTGGCCAA	0.652								Direct_reversal_of_damage|Editing_and_processing_nucleases					2	4	---	---	---	---					
EIF2AK3	9451	broad.mit.edu	37	2	88874269	88874270	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:88874269_88874270delCT	uc002stc.3	-	13	2933_2934	c.2731_2732delAG	c.(2731-2733)AGGfs	p.R911fs		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	911	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						ACACACGCTCCTCTCTCTCTCC	0.465													9	602	---	---	---	---					
GCC2	9648	broad.mit.edu	37	2	109087883	109087884	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:109087883_109087884insA	uc002tec.2	+	6	2252_2253	c.2098_2099insA	c.(2098-2100)GAAfs	p.E700fs	GCC2_uc002ted.2_Frame_Shift_Ins_p.E599fs	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	700	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACTCAGTTCAGAAAAAAAACAG	0.307													8	382	---	---	---	---					
ITGA4	3676	broad.mit.edu	37	2	182343491	182343492	+	Frame_Shift_Ins	INS	-	A	A			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr2:182343491_182343492insA	uc002unu.2	+	5	1327_1328	c.564_565insA	c.(562-567)GTGAAAfs	p.V188fs	ITGA4_uc010zfl.1_Frame_Shift_Ins_p.V188fs	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	188_189	FG-GAP 3.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TAGATTATGTGAAAAAATTTGG	0.243													9	29	---	---	---	---					
C20orf54	113278	broad.mit.edu	37	20	744613	744613	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr20:744613delC	uc002wed.3	-	3	941	c.602delG	c.(601-603)GGAfs	p.G201fs	C20orf54_uc002wee.2_Frame_Shift_Del_p.G201fs	NM_033409	NP_212134	Q9NQ40	RFT2_HUMAN	hypothetical protein LOC113278 precursor	201					sensory perception of sound	integral to plasma membrane	riboflavin transporter activity			ovary(2)	2						TGCTTCCATTCCGGGGAGGGC	0.587													2	4	---	---	---	---					
CRKL	1399	broad.mit.edu	37	22	21304075	21304075	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr22:21304075delT	uc002ztf.2	+	3	1363	c.854delT	c.(853-855)CTTfs	p.L285fs	CRKL_uc002ztg.1_RNA	NM_005207	NP_005198	P46109	CRKL_HUMAN	v-crk sarcoma virus CT10 oncogene homolog	285	SH3 2.				JNK cascade|Ras protein signal transduction	cytosol	protein tyrosine kinase activity|SH3/SH2 adaptor activity|signal transducer activity				0	all_cancers(11;1.16e-25)|all_epithelial(7;3.37e-24)|Lung NSC(8;7.25e-16)|all_lung(8;1.37e-14)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.176)			CGCAAAGGGCTTTTCCCCTTT	0.468													8	2850	---	---	---	---					
SLITRK3	22865	broad.mit.edu	37	3	164906282	164906282	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr3:164906282delA	uc003fej.3	-	2	2781	c.2337delT	c.(2335-2337)GGTfs	p.G779fs	SLITRK3_uc003fek.2_Frame_Shift_Del_p.G779fs	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	779	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GTGTCCCTGGACCCCCACGTT	0.562										HNSCC(40;0.11)			14	53	---	---	---	---					
FIP1L1	81608	broad.mit.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:54319248_54319249delAG	uc003gzy.2	+	16	1633_1634	c.1447_1448delAG	c.(1447-1449)AGAfs	p.R483fs	PDGFRA_uc003haa.2_Intron|FIP1L1_uc011bzu.1_Frame_Shift_Del_p.R477fs|FIP1L1_uc003gzz.2_Frame_Shift_Del_p.R409fs|FIP1L1_uc003hab.2_Frame_Shift_Del_p.R448fs|FIP1L1_uc003hac.2_Frame_Shift_Del_p.R237fs|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_Frame_Shift_Del_p.P67fs|FIP1L1_uc003hae.2_Frame_Shift_Del_p.P67fs	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	483	Arg-rich.|Sufficient for interaction with CPSF1 and CSTF3.|Glu-rich.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			agaACGCACCAGAGAGAGAGAG	0.292			T	PDGFRA	idiopathic hypereosinophilic syndrome								8	120	---	---	---	---					
CLOCK	9575	broad.mit.edu	37	4	56336954	56336954	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr4:56336954delA	uc003haz.1	-	9	1294	c.368delT	c.(367-369)TTAfs	p.L123fs	CLOCK_uc003hba.1_Frame_Shift_Del_p.L123fs	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	123	PAS 1.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			CATGATTGCTAAAAAAAAACC	0.289													8	461	---	---	---	---					
CDH10	1008	broad.mit.edu	37	5	24511437	24511437	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A1Q3-06A-11D-A196-08	TCGA-D3-A1Q3-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	c0955adc-8469-48a3-a66e-b0059adda3a6	ea02a2db-bb1c-43b6-8977-7289dd750b3c	g.chr5:24511437delT	uc003jgr.1	-	6	1333	c.1001delA	c.(1000-1002)AAGfs	p.K334fs	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	334	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GCTGTGCACCTTTTTCACAGT	0.403										HNSCC(23;0.051)			7	2017	---	---	---	---					
