Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DVL1	1855	broad.mit.edu	37	1	1275673	1275673	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:1275673G>A	uc001aer.3	-	7	770	c.723C>T	c.(721-723)ACC>ACT	p.T241T	DVL1_uc002quu.2_5'Flank|DVL1_uc009vka.2_5'Flank|DVL1_uc001aeu.1_5'UTR	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	241					canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TGGTGGAGTCGGTTATGCTGC	0.662000													10	61					0	0	0.000673444	0	0
TNFRSF25	8718	broad.mit.edu	37	1	6522219	6522219	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:6522219G>A	uc001ane.2	-	9	848	c.760C>T	c.(760-762)CCC>TCC	p.P254S	TNFRSF25_uc001ana.2_Missense_Mutation_p.P71S|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_Missense_Mutation_p.P27S|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Missense_Mutation_p.P217S|TNFRSF25_uc001ang.2_Missense_Mutation_p.P209S|TNFRSF25_uc001anh.2_Missense_Mutation_p.P263S	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	254	Cytoplasmic (Potential).				apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		CTGTCCAAGGGTGACAGATGG	0.632000													9	79					0	0	0.000442599	0	0
PER3	8863	broad.mit.edu	37	1	7887212	7887212	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:7887212C>T	uc001aoo.2	+	17	2374	c.2199C>T	c.(2197-2199)GGC>GGT	p.G733G	PER3_uc009vmg.1_Silent_p.G741G|PER3_uc009vmh.1_Silent_p.G734G|PER3_uc001aop.2_Silent_p.G741G|PER3_uc010nzw.1_Silent_p.G422G	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	733	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity	p.G733fs*115(1)		ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GGTCGGCCGGCTGCAGGAAAG	0.557000													5	34					0	0	0.00116845	0	0
MTOR	2475	broad.mit.edu	37	1	11307752	11307753	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:11307752_11307753GT>AA	uc001asd.2	-	8	1275_1276	c.1154_1155AC>TT	c.(1153-1155)AAC>ATT	p.N385I		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	385					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GGATCAGCGAGTTCTTGCTATT	0.500000													13	69					0	0	6.4e-05	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12837259	12837259	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:12837259G>A	uc001aui.2	+	3	996	c.969G>A	c.(967-969)GAG>GAA	p.E323E		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	323	LRR 1.									ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGCTAAAAGAGCTAGACCTGA	0.577000													20	95					0	0	0.00188189	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921158	12921158	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:12921158C>T	uc001aum.1	+	4	1036	c.949C>T	c.(949-951)CCA>TCA	p.P317S		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	317											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCCAGTTCCCAAGCCTCGG	0.493000													29	212					0	0	0.00106085	0	0
PRAMEF8	391002	broad.mit.edu	37	1	12980108	12980108	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:12980108G>A	uc001aup.2	+	4	1383	c.1300G>A	c.(1300-1302)GCT>ACT	p.A434T		NM_001012276	NP_001012276	Q5VWM4	PRAM8_HUMAN	PRAME family member 8	434											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGAACTTGGGGCTGAGCTGAT	0.587000													14	35					0	0	0.000422831	0	0
SPEN	23013	broad.mit.edu	37	1	16199550	16199550	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:16199550G>A	uc001axk.1	+	2	527	c.323G>A	c.(322-324)AGA>AAA	p.R108K	SPEN_uc010obp.1_5'Flank	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	108	By similarity.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCTGGGTTCAGAGGAGGTGGT	0.527000													10	89					0	0	0.000442599	0	0
CROCC	9696	broad.mit.edu	37	1	17263330	17263330	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:17263330G>A	uc001azt.2	+	9	1224	c.1155G>A	c.(1153-1155)CAG>CAA	p.Q385Q	CROCC_uc009voy.1_Silent_p.Q88Q|CROCC_uc009voz.1_Silent_p.Q148Q	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	385	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		CGCAGCAGCAGATGCAAAGCG	0.647000													6	68					0	0	0.00198382	0	0
PADI3	51702	broad.mit.edu	37	1	17606925	17606925	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:17606925G>A	uc001bai.2	+	14	1675	c.1635_splice	c.e14+1	p.Q545_splice		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III						peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	GTTTGTGCAGGTACAAGGGCT	0.493000													8	42					0	0	0.000157383	0	0
IGSF21	84966	broad.mit.edu	37	1	18554492	18554492	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:18554492C>T	uc001bau.1	+	2	554	c.171C>T	c.(169-171)ATC>ATT	p.I57I		NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	57	Ig-like 1.					extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		TGCGGGAGATCGTGTGGTACC	0.587000													7	49					0	0	0.000157383	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808297	18808297	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:18808297C>T	uc001bax.2	+	1	874	c.822C>T	c.(820-822)TTC>TTT	p.F274F	KLHDC7A_uc009vpg.2_Silent_p.F56F	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	274						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGGAGCATTTCATACAGAAGG	0.592000													26	114					0	0	0.00178596	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180721	19180721	+	Missense_Mutation	SNP	C	T	T	rs35605435		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:19180721C>T	uc001bba.1	-	3	1244	c.1243G>A	c.(1243-1245)GTC>ATC	p.V415I		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	415	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CAGGGGTAGACCACCCTCTTG	0.617000													8	27					0	0	0.000274275	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19216515	19216516	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:19216515_19216516GG>AA	uc001bbb.2	-	2	422_423	c.146_147CC>TT	c.(145-147)GCC>GTT	p.A49V	ALDH4A1_uc010ocu.1_5'UTR|ALDH4A1_uc001bbc.2_Missense_Mutation_p.A49V	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	49					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	CCTTTTGCAGGGCATCTCGCTC	0.653000													4	19					0	0	6.4e-05	0	0
UBR4	23352	broad.mit.edu	37	1	19465712	19465712	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:19465712G>A	uc001bbi.2	-	59	8600	c.8596C>T	c.(8596-8598)CCA>TCA	p.P2866S	UBR4_uc001bbk.1_Missense_Mutation_p.P513S	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2866					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TCTGAGGCTGGAGCTGAGAGA	0.463000													10	47					0	0	0.000673444	0	0
KIAA0090	23065	broad.mit.edu	37	1	19563686	19563687	+	Missense_Mutation	DNP	CG	AT	AT	rs147189826		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:19563686_19563687CG>AT	uc001bbo.2	-	12	1301_1302	c.1258_1259CG>AT	c.(1258-1260)CGG>ATG	p.R420M	KIAA0090_uc001bbp.2_Missense_Mutation_p.R420M|KIAA0090_uc001bbq.2_Missense_Mutation_p.R419M|KIAA0090_uc001bbr.2_Missense_Mutation_p.R398M	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	420	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		CACCAAAGCCCGGTAGCCCACT	0.475000													7	299					0	0	6.4e-05	0	0
SH2D5	400745	broad.mit.edu	37	1	21050929	21050929	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:21050929G>A	uc001bdt.1	-	5	963	c.338C>T	c.(337-339)TCC>TTC	p.S113F	SH2D5_uc009vpy.1_Missense_Mutation_p.S197F|SH2D5_uc001bdu.1_RNA	NM_001103160	NP_001096630	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5 isoform 2	113											0		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CCGCCGAAAGGAGACCAGGGC	0.662000													11	34					0	0	0.000673444	0	0
HSPG2	3339	broad.mit.edu	37	1	22162078	22162078	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:22162078C>T	uc001bfj.2	-	76	10448	c.10408G>A	c.(10408-10410)GGA>AGA	p.G3470R	HSPG2_uc009vqd.2_Missense_Mutation_p.G3471R	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3470	Ig-like C2-type 20.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCCCAAGGTCCATGGGCCTGG	0.502000													10	52					0	0	0.000978159	0	0
C1QB	713	broad.mit.edu	37	1	22987377	22987377	+	Missense_Mutation	SNP	G	A	A	rs3211003		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:22987377G>A	uc001bgd.2	+	3	392	c.260G>A	c.(259-261)GGA>GAA	p.G87E		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	87	Collagen-like 2.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGAATCCAGGAAAAGTCGGC	0.622000													5	48					0	0	0.00116845	0	0
EPHB2	2048	broad.mit.edu	37	1	23191389	23191389	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:23191389G>A	uc009vqj.1	+	5	1132	c.987G>A	c.(985-987)CAG>CAA	p.Q329Q	EPHB2_uc001bge.2_Silent_p.Q329Q|EPHB2_uc001bgf.2_Silent_p.Q329Q|EPHB2_uc010odu.1_Silent_p.Q329Q|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	329	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCGCGCCCCAGGCTGTGATTT	0.637000									Hereditary_Prostate_Cancer				17	67					0	0	0.000566183	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514779	26514779	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:26514779C>T	uc001bln.3	+	17	1588	c.1530C>T	c.(1528-1530)GCC>GCT	p.A510A	CNKSR1_uc001blm.3_Silent_p.A503A|CNKSR1_uc009vsd.2_Silent_p.A245A|CNKSR1_uc009vse.2_Silent_p.A245A|CNKSR1_uc001blo.2_Silent_p.A245A|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	510					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		CAGGCCGGGCCCCCCCACCCC	0.527000													12	43					0	0	0.00185496	0	0
GMEB1	10691	broad.mit.edu	37	1	29041063	29041063	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:29041063G>A	uc001bra.2	+	10	1638	c.1500G>A	c.(1498-1500)ATG>ATA	p.M500I	GMEB1_uc001bqz.2_Missense_Mutation_p.M490I|GMEB1_uc001brb.2_Missense_Mutation_p.M490I	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	500					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		TGGTGGCCATGGAGTCCGGCC	0.557000													6	47					0	0	0.000157383	0	0
SPOCD1	90853	broad.mit.edu	37	1	32264050	32264050	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:32264050C>T	uc001bts.1	-	8	2079	c.2021G>A	c.(2020-2022)AGG>AAG	p.R674K	SPOCD1_uc001btt.2_5'UTR|SPOCD1_uc001btu.2_Missense_Mutation_p.R674K|SPOCD1_uc001btv.2_Missense_Mutation_p.R167K|SPOCD1_uc001btw.1_5'UTR	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	674	TFIIS central.				transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		CACCAGGTTCCTGGGGTCCCG	0.622000													7	63					0	0	0.00198382	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579992	35579992	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:35579992C>T	uc001bym.2	+	11	2709	c.2561C>T	c.(2560-2562)TCC>TTC	p.S854F	ZMYM1_uc001byn.2_Missense_Mutation_p.S854F|ZMYM1_uc010ohu.1_Missense_Mutation_p.S835F|ZMYM1_uc001byo.2_Missense_Mutation_p.S494F|ZMYM1_uc009vut.2_Missense_Mutation_p.S779F	NM_024772	NP_079048	Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM domain containing 1	854						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACATTGGTTTCCAAATTTGAA	0.343000													6	37					0	0	0.00116845	0	0
CCDC30	728621	broad.mit.edu	37	1	43021893	43021893	+	Silent	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:43021893A>C	uc009vwk.1	+	5	602	c.492A>C	c.(490-492)CCA>CCC	p.P164P	CCDC30_uc001chm.2_5'UTR|CCDC30_uc001chn.2_Intron|CCDC30_uc010oju.1_RNA|CCDC30_uc001chp.2_Intron	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	164											0						GCAGTTTTCCAAGAGAGGGGC	0.413000													4	38					0	0	0.00024832	0	0
TIE1	7075	broad.mit.edu	37	1	43778085	43778085	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:43778085C>T	uc001ciu.2	+	12	1819	c.1740C>T	c.(1738-1740)TTC>TTT	p.F580F	TIE1_uc010okd.1_Silent_p.F580F|TIE1_uc010oke.1_Silent_p.F535F|TIE1_uc009vwq.2_Silent_p.F536F|TIE1_uc010okf.1_Silent_p.F225F|TIE1_uc010okg.1_Silent_p.F225F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	580	Fibronectin type-III 2.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCGACGGTTTCCTGCTGCGCC	0.701000													11	62					0	0	0.000978159	0	0
STIL	6491	broad.mit.edu	37	1	47746080	47746080	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:47746080G>A	uc001crc.1	-	12	2205	c.2050C>T	c.(2050-2052)CCT>TCT	p.P684S	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.P637S|STIL_uc010omo.1_Missense_Mutation_p.P684S|STIL_uc001crd.1_Missense_Mutation_p.P684S|STIL_uc001cre.1_Missense_Mutation_p.P684S|STIL_uc001crf.1_Missense_Mutation_p.P297S|STIL_uc001crg.1_Missense_Mutation_p.P637S	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	684	PIN1-binding (By similarity).				cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				CTTGCCACAGGCGATGGTTCA	0.483000													22	125					0	0	0.00278032	0	0
PRKAA2	5563	broad.mit.edu	37	1	57159464	57159464	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:57159464G>A	uc001cyk.3	+	5	573	c.502G>A	c.(502-504)GAA>AAA	p.E168K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	168	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GTCAGATGGTGAATTTCTGAG	0.318000													14	115					0	0	0.00244969	0	0
C8B	732	broad.mit.edu	37	1	57411609	57411609	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:57411609G>A	uc001cyp.2	-	7	1057	c.990C>T	c.(988-990)TAC>TAT	p.Y330Y	C8B_uc010oon.1_Silent_p.Y268Y|C8B_uc010ooo.1_Silent_p.Y278Y	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	330	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTATTCCCCGTAGCTGTACT	0.493000													6	55					0	0	0.00116845	0	0
USP1	7398	broad.mit.edu	37	1	62914219	62914219	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:62914219G>A	uc001daj.1	+	8	1832	c.1504G>A	c.(1504-1506)GAT>AAT	p.D502N	USP1_uc001dak.1_Missense_Mutation_p.D502N|USP1_uc001dal.1_Missense_Mutation_p.D502N	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	502					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		TGTAGGAGAAGATAAATATTT	0.348000													10	72					0	0	0.000673444	0	0
JAK1	3716	broad.mit.edu	37	1	65349124	65349124	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:65349124G>A	uc001dbu.1	-	3	290	c.41C>T	c.(40-42)GCT>GTT	p.A14V	JAK1_uc009wam.1_Missense_Mutation_p.A2V	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	14					interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		AGCACAGAAAGCCATGGCATT	0.473000			Mis		ALL								15	95					0	0	0.00074312	0	0
C1orf173	127254	broad.mit.edu	37	1	75038499	75038499	+	Silent	SNP	C	T	T	rs148451571		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:75038499C>T	uc001dgg.2	-	14	3114	c.2895G>A	c.(2893-2895)AAG>AAA	p.K965K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	965	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CGTCCTCTCTCTTTGATGCTG	0.522000													16	90					0	0	0.000422831	0	0
LPAR3	23566	broad.mit.edu	37	1	85331090	85331090	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:85331090C>T	uc001dkl.2	-	1	753	c.714G>A	c.(712-714)ATG>ATA	p.M238I	LPAR3_uc009wcj.1_Missense_Mutation_p.M238I	NM_012152	NP_036284	Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	238	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				lung(3)|ovary(2)	5						TCACCGTCTTCATTAGCTTCA	0.403000													6	33					0	0	0.00116845	0	0
WDR63	126820	broad.mit.edu	37	1	85595745	85595745	+	Missense_Mutation	SNP	C	T	T	rs143304188		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:85595745C>T	uc001dkt.2	+	22	2673	c.2482C>T	c.(2482-2484)CGT>TGT	p.R828C	WDR63_uc009wcl.2_Missense_Mutation_p.R789C	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	828	Potential.									upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		CAAAAAAATTCGTGAGCAAGA	0.368000													19	155					0	0	0.000958276	0	0
CLCA2	9635	broad.mit.edu	37	1	86916403	86916403	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:86916403T>C	uc001dlr.3	+	12	2304	c.2142T>C	c.(2140-2142)GGT>GGC	p.G714G		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	714	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		ATGTACCAGGTTACACAGCAA	0.443000													5	76					0	0	0.00198382	0	0
GSTM5	2949	broad.mit.edu	37	1	110256339	110256339	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:110256339G>A	uc001dyn.2	+	5	387	c.316G>A	c.(316-318)GAT>AAT	p.D106N	GSTM5_uc010ovu.1_Missense_Mutation_p.D65N	NM_000851	NP_000842	P46439	GSTM5_HUMAN	glutathione S-transferase mu 5	106	GST C-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity			central_nervous_system(6)	6		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Colorectal(144;0.0131)|all cancers(265;0.0252)|Epithelial(280;0.0265)|Lung(183;0.0425)|COAD - Colon adenocarcinoma(174;0.0474)|LUSC - Lung squamous cell carcinoma(189;0.228)	Glutathione(DB00143)	CCAGGTTATGGATAACCACAT	0.522000													4	30					0	0	0.00024832	0	0
KCNA10	3744	broad.mit.edu	37	1	111060492	111060492	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:111060492G>A	uc001dzt.1	-	1	1306	c.918C>T	c.(916-918)ATC>ATT	p.I306I		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	306	Helical; Name=Segment S3; (Potential).					voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TGATGTCAATGATGTTCATGA	0.527000													14	77					0	0	0.000308642	0	0
KCND3	3752	broad.mit.edu	37	1	112329723	112329723	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:112329723C>T	uc001ebu.1	-	3	1592	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E	KCND3_uc001ebv.1_Missense_Mutation_p.G371E	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	371	Selectivity filter (By similarity).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		CACCATGTCTCCGTATCTGAG	0.517000													6	74					0	0	0.000157383	0	0
KCND3	3752	broad.mit.edu	37	1	112524544	112524544	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:112524544G>A	uc001ebu.1	-	2	1285	c.805C>T	c.(805-807)CCC>TCC	p.P269S	KCND3_uc001ebv.1_Missense_Mutation_p.P269S	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	269	Helical; Name=Segment S3; (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATGTAGTAGGGCATGATGGCC	0.602000													16	81					0	0	0.000422831	0	0
PTPN22	26191	broad.mit.edu	37	1	114380623	114380623	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:114380623C>T	uc001eds.2	-	13	1529	c.1399G>A	c.(1399-1401)GAA>AAA	p.E467K	PTPN22_uc009wgq.2_Missense_Mutation_p.E412K|PTPN22_uc010owo.1_Missense_Mutation_p.E223K|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.E467K|PTPN22_uc009wgs.2_Missense_Mutation_p.E340K|PTPN22_uc001edu.2_Missense_Mutation_p.E467K	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	467					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAAAGTTTTCCTTGCTGTCC	0.373000													7	78					0	0	0.000274275	0	0
TRIM33	51592	broad.mit.edu	37	1	114964156	114964156	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:114964156G>C	uc001eew.2	-	11	2047	c.1963C>G	c.(1963-1965)CGA>GGA	p.R655G	TRIM33_uc010owr.1_Missense_Mutation_p.R245G|TRIM33_uc010ows.1_Missense_Mutation_p.R263G|TRIM33_uc001eex.2_Missense_Mutation_p.R655G	NM_015906	NP_056990	Q9UPN9	TRI33_HUMAN	tripartite motif-containing 33 protein isoform	655					negative regulation of BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	nucleus	co-SMAD binding|DNA binding|ligase activity|R-SMAD binding|zinc ion binding			lung(4)|central_nervous_system(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	11	all_epithelial(7;0.000132)|all_lung(7;0.00106)|Lung SC(450;0.184)	all_cancers(81;3.03e-08)|all_epithelial(167;3.24e-08)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTGGGACCTCGGTTTGCATTT	0.507000			T	RET	papillary thyroid								19	82					0	0	0.000958276	0	0
SYCP1	6847	broad.mit.edu	37	1	115399263	115399263	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:115399263G>A	uc001efr.2	+	3	387	c.178G>A	c.(178-180)GAA>AAA	p.E60K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E60K|SYCP1_uc009wgw.2_Missense_Mutation_p.E60K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	60	Asp/Glu-rich (acidic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAAAAATGGGGAAAACATTGA	0.318000													9	67					0	0	0.000978159	0	0
VTCN1	79679	broad.mit.edu	37	1	117690362	117690362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:117690362G>A	uc001ehb.2	-	5	839	c.767C>T	c.(766-768)TCA>TTA	p.S256L	VTCN1_uc001ehc.2_Missense_Mutation_p.S161L|VTCN1_uc009whf.1_Missense_Mutation_p.S140L	NM_024626	NP_078902	Q7Z7D3	VTCN1_HUMAN	V-set domain containing T cell activation	256	Extracellular (Potential).					integral to membrane|plasma membrane					0	Lung SC(450;0.225)	all_cancers(81;6.05e-06)|all_epithelial(167;5.59e-07)|all_lung(203;2.85e-06)|Lung NSC(69;2e-05)		Lung(183;0.0664)|LUSC - Lung squamous cell carcinoma(189;0.214)|Colorectal(144;0.23)		AGAAGCCTTTGAGTTTAGCAG	0.468000													13	61					0	0	0.000308642	0	0
HSD3B1	3283	broad.mit.edu	37	1	120050235	120050235	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:120050235G>A	uc001ehv.1	+	2	281	c.136G>A	c.(136-138)GAA>AAA	p.E46K	HSD3B1_uc001ehw.2_Missense_Mutation_p.E48K	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	46					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	ATTGAGAGAGGAATTTTCTAG	0.478000													16	89					0	0	0.00074312	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056460	120056460	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:120056460C>T	uc001ehv.1	+	4	459	c.314C>T	c.(313-315)ACC>ATC	p.T105I	HSD3B1_uc001ehw.2_Missense_Mutation_p.T107I	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	105					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	TGGACAGGTACCCAGCTCCTG	0.512000													33	227					0	0	0.000692331	0	0
GJA5	2702	broad.mit.edu	37	1	147230993	147230993	+	Silent	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:147230993C>G	uc001eps.1	-	2	495	c.354G>C	c.(352-354)CGG>CGC	p.R118R	GJA5_uc001ept.1_Silent_p.R118R	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	118	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			AGCCAGAGCCCCGGACCTCTT	0.617000													20	62					0	0	0.000958276	0	0
SF3B4	10262	broad.mit.edu	37	1	149895472	149895472	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:149895472G>A	uc001etj.1	-	6	1288	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S	SF3B4_uc001eti.1_Missense_Mutation_p.P177S|SF3B4_uc001etk.1_Missense_Mutation_p.P413S	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	413						nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			CCTCGAGGGGGAACTGGTGGC	0.582000													11	32					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	1	151991192	151991192	+	RNA	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:151991192G>A	uc001ezm.1	+	8		c.2256G>A								Homo sapiens cDNA FLJ43896 fis, clone TESTI4009752.																		ATGAACACTGGAGAAATCAAC	0.493000													7	71					0	0	0.000274275	0	0
FLG	2312	broad.mit.edu	37	1	152283934	152283934	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:152283934C>T	uc001ezu.1	-	3	3464	c.3428G>A	c.(3427-3429)GGA>GAA	p.G1143E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1143	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGTGGGATCCTTGTCTTCG	0.597000									Ichthyosis				49	251					0	0	0.000781405	0	0
LCE1C	353133	broad.mit.edu	37	1	152777644	152777644	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:152777644C>T	uc001fap.1	-	2	362	c.311G>A	c.(310-312)AGC>AAC	p.S104N		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	104	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCCACAGCAGCTGGAGCCCCC	0.672000													8	55					0	0	0.000308642	0	0
NUP210L	91181	broad.mit.edu	37	1	154033425	154033425	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:154033425T>G	uc001fdw.2	-	19	2813	c.2741A>C	c.(2740-2742)GAT>GCT	p.D914A	NUP210L_uc009woq.2_Intron|NUP210L_uc010peh.1_Missense_Mutation_p.D914A	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	914						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TACCTTTACATCAGGGTGGTT	0.368000													16	133					0	0	0.000566183	0	0
ASH1L	55870	broad.mit.edu	37	1	155324386	155324386	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:155324386C>T	uc009wqq.2	-	16	7586	c.7106G>A	c.(7105-7107)CGA>CAA	p.R2369Q	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.R2364Q	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2369					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			CTCCCAGTTTCGGACCAAGAA	0.368000													21	121					0	0	0.00152264	0	0
SYT11	23208	broad.mit.edu	37	1	155837946	155837946	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:155837946C>T	uc001fmg.2	+	2	488	c.225C>T	c.(223-225)ATC>ATT	p.I75I	SYT11_uc010pgq.1_Intron	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	75	Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			AGAAGAAAATCATCAAAGTGC	0.507000													26	97					0	0	0.00047179	0	0
SMG5	23381	broad.mit.edu	37	1	156233251	156233251	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:156233251G>A	uc001foc.3	-	13	2115	c.1966C>T	c.(1966-1968)CCT>TCT	p.P656S	SMG5_uc009wrv.2_Missense_Mutation_p.P141S	NM_015327	NP_056142	Q9UPR3	SMG5_HUMAN	SMG5 homolog nonsense mediated mRNA decay	656					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|nucleus	protein phosphatase 2A binding			ovary(2)|skin(2)|pancreas(1)	5	Hepatocellular(266;0.158)					TTCACAGCAGGAAGCAGACCT	0.602000													7	95					0	0	0.000157383	0	0
MEF2D	4209	broad.mit.edu	37	1	156438006	156438006	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:156438006G>A	uc001fpc.2	-	11	1723	c.1333C>T	c.(1333-1335)CCA>TCA	p.P445S	MEF2D_uc001fpb.2_Missense_Mutation_p.P438S|MEF2D_uc001fpd.2_Missense_Mutation_p.P438S|MEF2D_uc001fpe.1_Missense_Mutation_p.P445S|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	445					apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TCACGGCTTGGGGACACCGGT	0.692000													13	61					0	0	0.00244969	0	0
C1orf66	51093	broad.mit.edu	37	1	156703213	156703213	+	Silent	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:156703213G>T	uc001fpu.2	+	5	1171	c.537G>T	c.(535-537)GTG>GTT	p.V179V	C1orf66_uc001fpv.2_Silent_p.V179V	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	179						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGTTGATGGTGAAGAGCATCG	0.592000													20	128					1.10513e-12	3.63815e-12	0.00229938	1	0
CD1C	911	broad.mit.edu	37	1	158262541	158262541	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:158262541C>T	uc001fru.2	+	4	1058	c.766C>T	c.(766-768)CCT>TCT	p.P256S	CD1C_uc001frv.2_Missense_Mutation_p.P59S	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	256	Extracellular (Potential).|Ig-like.				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TGATATTCTTCCTAATGCTGA	0.527000													12	101					0	0	0.00136819	0	0
OR10T2	128360	broad.mit.edu	37	1	158369106	158369106	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:158369106G>A	uc010pih.1	-	1	151	c.151C>T	c.(151-153)CGC>TGC	p.R51C		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	51	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAGCTGAAGCGAATAACGGCC	0.483000													6	30					0	0	0.00116845	0	0
SPTA1	6708	broad.mit.edu	37	1	158607893	158607893	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:158607893C>T	uc001fst.1	-	36	5318	c.5119G>A	c.(5119-5121)GAA>AAA	p.E1707K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1707	Spectrin 16.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCAATTTTTCGTGGTGTGCA	0.443000													11	65					0	0	0.000978159	0	0
OR6K2	81448	broad.mit.edu	37	1	158670427	158670427	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:158670427G>A	uc001fsu.1	-	1	16	c.16C>T	c.(16-18)CGA>TGA	p.R6*		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					ATGGTGGTTCGATTGGGGCTC	0.428000													6	63					0	0	0.00198382	0	0
OR6K3	391114	broad.mit.edu	37	1	158686961	158686961	+	Silent	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:158686961A>C	uc010pip.1	-	1	993	c.993T>G	c.(991-993)GGT>GGG	p.G331G		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	331	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CTCTGTATTAACCTCCAGGCT	0.269000													4	23					0	0	0.000602214	0	0
CCDC19	25790	broad.mit.edu	37	1	159842795	159842795	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:159842795C>T	uc001fui.2	-	11	1534	c.1516G>A	c.(1516-1518)GAG>AAG	p.E506K	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.E421K|CCDC19_uc001ful.2_Missense_Mutation_p.E421K	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	506	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TTCTGGGCCTCCTCTTTGAGG	0.577000													12	70					0	0	0.000978159	0	0
SLAMF6	114836	broad.mit.edu	37	1	160460440	160460440	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:160460440G>A	uc001fwe.1	-	4	742	c.682C>T	c.(682-684)CTG>TTG	p.L228L	SLAMF6_uc001fwd.1_Silent_p.L228L|SLAMF6_uc010pjh.1_Silent_p.L179L|SLAMF6_uc010pji.1_Silent_p.L117L|SLAMF6_uc010pjj.1_Silent_p.L117L|SLAMF6_uc009wtm.1_3'UTR	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	228	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			ACCATAAACAGAATCATTTTG	0.368000													4	28					0	0	0.00116845	0	0
CD48	962	broad.mit.edu	37	1	160648919	160648919	+	Silent	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:160648919G>T	uc001fwn.2	-	4	687	c.655C>A	c.(655-657)CGG>AGG	p.R219R		NM_001778	NP_001769	P09326	CD48_HUMAN	CD48 molecule precursor	219					blood coagulation|defense response|leukocyte migration	integral to plasma membrane|membrane raft	protein binding				0	all_cancers(52;2.18e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CCAAAGGACCGGGCTGAAAGA	0.468000													8	67					1.06961e-07	3.51323e-07	0.000157383	1	0
FCRLA	84824	broad.mit.edu	37	1	161681928	161681929	+	Missense_Mutation	DNP	CC	AT	AT	rs147507735		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:161681928_161681929CC>AT	uc001gbe.2	+	5	1015_1016	c.773_774CC>AT	c.(772-774)TCC>TAT	p.S258Y	FCRLA_uc001gbd.2_Missense_Mutation_p.S252Y|FCRLA_uc001gbf.2_Missense_Mutation_p.S163Y|FCRLA_uc001gbg.2_Missense_Mutation_p.S112Y|FCRLA_uc009wuo.2_Missense_Mutation_p.S118Y|FCRLA_uc009wup.2_Intron|FCRLA_uc009wuq.2_Intron	NM_032738	NP_116127	Q7L513	FCRLA_HUMAN	Fc receptor-like and mucin-like 1	235	Ig-like C2-type 2.				cell differentiation	cytoplasm|extracellular region					0	all_cancers(52;2.55e-15)|all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00301)			GAAGATCACTCCGGGTCATACT	0.550000													12	65					0	0	6.4e-05	0	0
PBX1	5087	broad.mit.edu	37	1	164761910	164761910	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:164761910G>A	uc001gct.2	+	3	703	c.445G>A	c.(445-447)GAT>AAT	p.D149N	PBX1_uc010pku.1_Missense_Mutation_p.D149N|PBX1_uc010pkv.1_Missense_Mutation_p.D66N|PBX1_uc001gcs.2_Missense_Mutation_p.D149N|PBX1_uc010pkw.1_Missense_Mutation_p.D39N	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	149					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GGAGCATTCAGATTACAGAGC	0.493000			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								19	84					0	0	0.00121646	0	0
DUSP27	92235	broad.mit.edu	37	1	167095846	167095846	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:167095846G>A	uc001geb.1	+	5	1478	c.1478G>A	c.(1477-1479)CGG>CAG	p.R493Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	493					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GAGGCTTCCCGGAGGTACCAC	0.647000													5	46					0	0	0.000602214	0	0
SLC19A2	10560	broad.mit.edu	37	1	169446914	169446914	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:169446914G>A	uc001gge.3	-	2	490	c.286C>T	c.(286-288)CGT>TGT	p.R96C	SLC19A2_uc001ggf.3_Intron	NM_006996	NP_008927	O60779	S19A2_HUMAN	solute carrier family 19, member 2	96	Cytoplasmic (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|folic acid transporter activity|reduced folate carrier activity|thiamine uptake transmembrane transporter activity				0	all_hematologic(923;0.208)					GGTTTATAACGGAGGTAGTCT	0.428000													6	38					0	0	0.00116845	0	0
TNR	7143	broad.mit.edu	37	1	175355337	175355337	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:175355337C>T	uc001gkp.1	-	6	1689	c.1608G>A	c.(1606-1608)TTG>TTA	p.L536L	TNR_uc009wwu.1_Silent_p.L536L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	536	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGCCATATTTCAAAAGAATGA	0.597000													7	20					0	0	0.000157383	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661352	176661352	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:176661352G>A	uc001gkz.2	+	6	3686	c.2522G>A	c.(2521-2523)AGA>AAA	p.R841K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	841					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACTGAAAGCAGAAAGCCCACC	0.498000													31	135					0	0	0.000692331	0	0
PAPPA2	60676	broad.mit.edu	37	1	176661369	176661369	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:176661369C>A	uc001gkz.2	+	6	3703	c.2539C>A	c.(2539-2541)CCC>ACC	p.P847T	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	847					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CACCCCCATCCCCATTCCACC	0.512000													35	156					1.57019e-19	5.19275e-19	0.00170553	1	0
PAPPA2	60676	broad.mit.edu	37	1	176668661	176668661	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:176668661G>A	uc001gkz.2	+	8	4336	c.3172G>A	c.(3172-3174)GAT>AAT	p.D1058N	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1058					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGTTCTCCGCGATCCCCCATT	0.552000													20	154					0	0	0.00188189	0	0
ASTN1	460	broad.mit.edu	37	1	176833426	176833426	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:176833426C>T	uc001glc.2	-	23	4091	c.3879G>A	c.(3877-3879)GAG>GAA	p.E1293E	ASTN1_uc001glb.1_Intron	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1301					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GGTGCTAGATCTCTTTGCTGT	0.517000													14	147					0	0	0.000308642	0	0
ASTN1	460	broad.mit.edu	37	1	176983946	176983946	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:176983946C>T	uc001glc.2	-	8	1716	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K	ASTN1_uc001glb.1_Missense_Mutation_p.E502K|ASTN1_uc001gld.1_Missense_Mutation_p.E502K|ASTN1_uc009wwx.1_Missense_Mutation_p.E502K|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	510					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GTCCCCCATTCGTTCCGAATG	0.493000													56	252					0	0	0.000781405	0	0
CACNA1E	777	broad.mit.edu	37	1	181754883	181754883	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:181754883C>T	uc001gow.2	+	43	5879	c.5714C>T	c.(5713-5715)TCA>TTA	p.S1905L	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1793L|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1131L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1905	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATGGAGCCTTCATCTCTGCCT	0.502000													43	207					0	0	0.000781405	0	0
APOBEC4	403314	broad.mit.edu	37	1	183617323	183617323	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:183617323G>A	uc001gqn.2	-	2	866	c.594C>T	c.(592-594)CTC>CTT	p.L198L	RGL1_uc010pof.1_Intron|RGL1_uc001gqm.2_Intron|RGL1_uc010pog.1_Intron|RGL1_uc010poh.1_Intron	NM_203454	NP_982279	Q8WW27	ABEC4_HUMAN	apolipoprotein B	198					mRNA processing		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|zinc ion binding				0						TAAAGCTGTGGAGAACAGAAT	0.512000													9	74					0	0	0.000673444	0	0
PRG4	10216	broad.mit.edu	37	1	186276833	186276833	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:186276833C>T	uc001gru.3	+	7	2033	c.1982C>T	c.(1981-1983)CCT>CTT	p.P661L	PRG4_uc001grt.3_Missense_Mutation_p.P620L|PRG4_uc009wyl.2_Missense_Mutation_p.P568L|PRG4_uc009wym.2_Missense_Mutation_p.P527L|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	661	59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCCACCACCCCTGAGGAGCCT	0.667000													10	31					0	0	0.000442599	0	0
CFH	3075	broad.mit.edu	37	1	196646616	196646616	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:196646616T>C	uc001gtj.3	+	5	678	c.438T>C	c.(436-438)TGT>TGC	p.C146C	CFH_uc001gti.3_Silent_p.C146C|CFH_uc009wyw.2_Silent_p.C146C|CFH_uc009wyx.2_Intron	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	146	Sushi 3.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTGTGAAGTGTTTACCAGTGA	0.338000													5	22					0	0	0.00116845	0	0
CRB1	23418	broad.mit.edu	37	1	197396610	197396610	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:197396610G>A	uc001gtz.2	+	7	2290	c.2155G>A	c.(2155-2157)GAT>AAT	p.D719N	CRB1_uc010poz.1_Missense_Mutation_p.D650N|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.D607N|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.D200N|CRB1_uc001gub.1_Missense_Mutation_p.D368N	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	719	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATTTGGCCAGGATGACTCCAC	0.438000													7	39					0	0	0.000157383	0	0
CRB1	23418	broad.mit.edu	37	1	197396679	197396679	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:197396679T>C	uc001gtz.2	+	7	2359	c.2224T>C	c.(2224-2226)TTT>CTT	p.F742L	CRB1_uc010poz.1_Missense_Mutation_p.F673L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.F630L|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.F223L|CRB1_uc001gub.1_Missense_Mutation_p.F391L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	742	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CCTCTCCATGTTTGTCCGAAC	0.473000													4	32					0	0	0.00024832	0	0
TIMM17A	10440	broad.mit.edu	37	1	201934671	201934672	+	Splice_Site	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:201934671_201934672GG>AA	uc001gxc.2	+	5	466	c.430_splice	c.e5+1	p.G144_splice		NM_006335	NP_006326	Q99595	TI17A_HUMAN	translocase of inner mitochondrial membrane 17						protein targeting to mitochondrion	integral to membrane|mitochondrial inner membrane presequence translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity				0						GTTTCCCAATGGTGAGTCTTTT	0.396000													12	66					0	0	6.4e-05	0	0
MFSD4	148808	broad.mit.edu	37	1	205569584	205569584	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:205569584A>G	uc001hcv.3	+	10	1626	c.1540A>G	c.(1540-1542)AGG>GGG	p.R514G	MFSD4_uc010prk.1_Missense_Mutation_p.R427G|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Missense_Mutation_p.R459G|MFSD4_uc009xbn.2_RNA	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	514					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GTGCTACCAGAGGTAAAACTG	0.463000													3	37					0	0	6.4e-05	0	0
YOD1	55432	broad.mit.edu	37	1	207222387	207222387	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:207222387T>C	uc001hfe.1	-	2	1072	c.1025A>G	c.(1024-1026)CAT>CGT	p.H342R	PFKFB2_uc010psc.1_Intron|YOD1_uc001hff.1_Missense_Mutation_p.H298R	NM_018566	NP_061036	Q5VVQ6	OTU1_HUMAN	YOD1 OTU deubiquinating enzyme 1 homolog	342	C2H2-type.	By similarity.			cellular amino acid metabolic process|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein K48-linked deubiquitination|protein K63-linked deubiquitination	intracellular	protein binding|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1	Prostate(682;0.19)					AAAGTTGGTATGGCCTGTCTC	0.468000													19	174					0	0	0.00229938	0	0
LOC642587	642587	broad.mit.edu	37	1	209603818	209603818	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:209603818G>A	uc009xcn.2	+	3	543	c.160G>A	c.(160-162)GAG>AAG	p.E54K	LOC642587_uc010psk.1_5'Flank|MIR205_hsa-mir-205|MI0000285_5'Flank	NM_001104548	NP_001098018			hypothetical protein LOC642587												0				OV - Ovarian serous cystadenocarcinoma(81;0.0422)		GACCCCACATGAGGGTGAGGC	0.532000													18	87					0	0	0.00121646	0	0
HSD11B1	3290	broad.mit.edu	37	1	209905834	209905834	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:209905834G>A	uc001hhj.2	+	6	678	c.571G>A	c.(571-573)GAT>AAT	p.D191N	HSD11B1_uc001hhk.2_Missense_Mutation_p.D191N	NM_181755	NP_861420	P28845	DHI1_HUMAN	11-beta-hydroxysteroid dehydrogenase 1	191	Lumenal (Potential).				glucocorticoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	11-beta-hydroxysteroid dehydrogenase (NADP+) activity|11-beta-hydroxysteroid dehydrogenase|binding			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;1.04e-55)|Epithelial(68;1.57e-52)|all cancers(67;1.83e-46)|Colorectal(1306;0.115)	NADH(DB00157)	GTTTGCTTTGGATGGGTTCTT	0.428000													20	89					0	0	0.00229938	0	0
TRAF5	7188	broad.mit.edu	37	1	211526699	211526699	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:211526699G>A	uc001hih.2	+	2	178	c.118G>A	c.(118-120)GAA>AAA	p.E40K	TRAF5_uc001hii.2_Missense_Mutation_p.E40K|TRAF5_uc010psx.1_Missense_Mutation_p.E40K|TRAF5_uc010psy.1_Missense_Mutation_p.E40K|TRAF5_uc001hij.2_Missense_Mutation_p.E40K	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	40					apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		GGAGCGGTTGGAAGAGCGCTA	0.547000													22	120					0	0	0.00188189	0	0
USH2A	7399	broad.mit.edu	37	1	215963483	215963483	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:215963483C>T	uc001hku.1	-	51	10487	c.10100G>A	c.(10099-10101)AGC>AAC	p.S3367N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3367	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCATTTCTGGCTCTTTGGAAT	0.383000										HNSCC(13;0.011)			7	32					0	0	0.000157383	0	0
C1orf55	163859	broad.mit.edu	37	1	226183064	226183064	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:226183064G>A	uc001hpu.3	-	2	194	c.141C>T	c.(139-141)TTC>TTT	p.F47F	C1orf55_uc001hpv.2_Silent_p.F47F	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	47										lung(1)	1	Breast(184;0.197)					ATTTCACAAAGAAGTTTTCCA	0.383000													8	45					0	0	0.000442599	0	0
OBSCN	84033	broad.mit.edu	37	1	228559615	228559615	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:228559615G>A	uc009xez.1	+	94	21180	c.21136G>A	c.(21136-21138)GGC>AGC	p.G7046S	OBSCN_uc001hsr.1_Missense_Mutation_p.G1675S	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	7046	Pro-rich.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCCCCAGGAGGGCTGCAGCCC	0.672000													5	21					0	0	0.000602214	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232629380	232629380	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:232629380C>T	uc001hvg.2	-	2	1668	c.1510G>A	c.(1510-1512)GAA>AAA	p.E504K		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	504					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				CCAAGGTTTTCATCTATTCCA	0.448000													52	228					0	0	0.000781405	0	0
PCNXL2	80003	broad.mit.edu	37	1	233313585	233313585	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:233313585G>A	uc001hvl.2	-	17	3471	c.3236C>T	c.(3235-3237)GCT>GTT	p.A1079V	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1079						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				AGGGTCAGCAGCTGACTCTGC	0.433000													11	45					0	0	0.000978159	0	0
RYR2	6262	broad.mit.edu	37	1	237580356	237580356	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:237580356C>T	uc001hyl.1	+	11	901	c.781C>T	c.(781-783)CAT>TAT	p.H261Y		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	261	Cytoplasmic (By similarity).|MIR 3.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAGAACTGTTCATTATGAAGG	0.393000													7	39					0	0	0.000157383	0	0
RYR2	6262	broad.mit.edu	37	1	237780661	237780661	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:237780661G>A	uc001hyl.1	+	38	5911	c.5791G>A	c.(5791-5793)GAT>AAT	p.D1931N		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1931	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTTTTCAGATGATTTTGTGGC	0.468000													8	38					0	0	0.000157383	0	0
CHRM3	1131	broad.mit.edu	37	1	240071876	240071876	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:240071876C>A	uc001hyp.2	+	5	1904	c.1125C>A	c.(1123-1125)AGC>AGA	p.S375R		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	375	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CGGGTCACAGCACCATCCTCA	0.602000													5	19					0.000602214	0.00196245	0.000602214	1	0
FMN2	56776	broad.mit.edu	37	1	240370979	240370979	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:240370979C>T	uc010pyd.1	+	5	3092	c.2867C>T	c.(2866-2868)CCG>CTG	p.P956L	FMN2_uc010pye.1_Missense_Mutation_p.P960L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	956	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ATACCCCCTCCGCCCCCTCTT	0.697000													4	21					0	0	0.000602214	0	0
RGS7	6000	broad.mit.edu	37	1	241262011	241262011	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:241262011G>A	uc001hyv.2	-	3	460	c.130C>T	c.(130-132)CGT>TGT	p.R44C	RGS7_uc010pyh.1_Missense_Mutation_p.R18C|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.R44C|RGS7_uc009xgn.1_Missense_Mutation_p.R44C|RGS7_uc001hyw.2_Missense_Mutation_p.R44C	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	44	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TTGACCGTACGAATAGGAATT	0.358000													7	39					0	0	0.000274275	0	0
KMO	8564	broad.mit.edu	37	1	241753362	241753362	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:241753362G>A	uc009xgp.2	+	13	1212	c.1147G>A	c.(1147-1149)GAG>AAG	p.E383K	KMO_uc001hyy.2_Missense_Mutation_p.E370K|KMO_uc009xgo.1_Missense_Mutation_p.E383K	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	383					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GAAGAACATGGAGAGATTTCT	0.378000													8	76					0	0	0.000442599	0	0
AHCTF1	25909	broad.mit.edu	37	1	247013051	247013051	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:247013051G>A	uc001ibu.1	-	32	6264	c.6257C>T	c.(6256-6258)GCC>GTC	p.A2086V	AHCTF1_uc001ibv.1_Missense_Mutation_p.A2095V|AHCTF1_uc009xgs.1_Missense_Mutation_p.A947V|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	2086	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GGAAGCTGTGGCGAGCAATCT	0.443000													10	63					0	0	0.000673444	0	0
OR2G2	81470	broad.mit.edu	37	1	247752184	247752184	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:247752184C>T	uc010pyy.1	+	1	523	c.523C>T	c.(523-525)CGC>TGC	p.R175C		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGTGGGCATCGCCAAGTGGA	0.557000													15	81					0	0	0.000308642	0	0
OR6F1	343169	broad.mit.edu	37	1	247876018	247876018	+	Silent	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:247876018A>G	uc001idj.1	-	1	40	c.40T>C	c.(40-42)TTA>CTA	p.L14L		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AAGCCCAGTAAGAGAAAGTCC	0.458000													12	82					0	0	0.00136819	0	0
OR2T6	254879	broad.mit.edu	37	1	248551181	248551181	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:248551181C>T	uc001iei.1	+	1	272	c.272C>T	c.(271-273)ACC>ATC	p.T91I		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCGAGGGGACCATCTCTTTC	0.527000													15	68					0	0	0.000422831	0	0
KLF6	1316	broad.mit.edu	37	10	3821774	3821774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:3821774G>A	uc001iha.2	-	4	1076	c.809C>T	c.(808-810)TCC>TTC	p.S270F	KLF6_uc010qaj.1_Missense_Mutation_p.P229S|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Missense_Mutation_p.S228F	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	270	C2H2-type 3.				B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		GTCAGACCTGGAAAAACACCT	0.587000													6	35					0	0	0.000157383	0	0
CACNB2	783	broad.mit.edu	37	10	18825093	18825093	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:18825093G>A	uc001ipr.2	+	12	1330	c.1270G>A	c.(1270-1272)GTA>ATA	p.V424I	CACNB2_uc009xjz.1_Missense_Mutation_p.V174I|CACNB2_uc001ips.2_Missense_Mutation_p.V400I|CACNB2_uc001ipt.2_Missense_Mutation_p.V386I|CACNB2_uc001ipu.2_Missense_Mutation_p.V396I|CACNB2_uc001ipv.2_Missense_Mutation_p.V372I|CACNB2_uc009xka.1_Missense_Mutation_p.V358I|CACNB2_uc001ipw.2_Missense_Mutation_p.V331I|CACNB2_uc001ipx.2_Missense_Mutation_p.V369I|CACNB2_uc001ipz.2_Missense_Mutation_p.V346I|CACNB2_uc001ipy.2_Missense_Mutation_p.V370I|CACNB2_uc010qco.1_Missense_Mutation_p.V338I|CACNB2_uc001iqa.2_Missense_Mutation_p.V376I|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	424					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGTCCAGATGGTAGCAGCTGA	0.333000													4	22					0	0	0.00024832	0	0
MKX	283078	broad.mit.edu	37	10	28023391	28023391	+	Missense_Mutation	SNP	G	A	A	rs138096382		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:28023391G>A	uc001ity.3	-	5	1057	c.832C>T	c.(832-834)CGC>TGC	p.R278C	MKX_uc001itx.3_Missense_Mutation_p.R278C	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	278					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTACCTGTGCGATAGACAAAG	0.393000													6	59					0	0	0.00198382	0	0
MPP7	143098	broad.mit.edu	37	10	28378716	28378716	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:28378716G>A	uc001iua.1	-	14	1411	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.S336F|MPP7_uc009xla.2_Missense_Mutation_p.S336F|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	336					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TTCATACATGGATTTATTTGT	0.323000													17	56					0	0	0.000566183	0	0
MPP7	143098	broad.mit.edu	37	10	28420551	28420551	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:28420551C>T	uc001iua.1	-	8	789	c.385G>A	c.(385-387)GAT>AAT	p.D129N	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.D129N|MPP7_uc009xla.2_Missense_Mutation_p.D129N|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	129					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TCGTCAATATCTTCAGGCATA	0.388000													12	72					0	0	0.00136819	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37451751	37451751	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:37451751G>A	uc001iza.1	+	17	1908	c.1809G>A	c.(1807-1809)TTG>TTA	p.L603L		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	659						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CCTTGGAATTGAAAAATGAAC	0.328000													16	99					0	0	0.00074312	0	0
PPYR1	5540	broad.mit.edu	37	10	47087212	47087212	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:47087212C>T	uc001jee.2	+	3	848	c.429C>T	c.(427-429)ATC>ATT	p.I143I	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.I143I	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	143	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						ATCAGCTCATCATCAACCCAA	0.597000													18	205					0	0	0.00121646	0	0
RBP3	5949	broad.mit.edu	37	10	48387899	48387899	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:48387899G>A	uc001jez.2	-	1	3093	c.2979C>T	c.(2977-2979)TCC>TCT	p.S993S		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	993	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GTGGGTCTCCGGAGAGCATCT	0.602000													12	80					0	0	0.000978159	0	0
ERCC6	2074	broad.mit.edu	37	10	50740647	50740648	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:50740647_50740648GG>AT	uc001jhs.3	-	2	517_518	c.363_364CC>AT	c.(361-366)AGCCGT>AGATGT	p.121_122SR>RC	PGBD3_uc009xoe.2_Missense_Mutation_p.121_122SR>RC|PGBD3_uc001jhu.2_Missense_Mutation_p.121_122SR>RC	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	121_122					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						TGGGAGGCACGGCTGGCCTCAT	0.569000								Direct_reversal_of_damage|NER					7	66					0	0	6.4e-05	0	0
PCDH15	65217	broad.mit.edu	37	10	55570341	55570341	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:55570341G>A	uc010qhs.1	-	36	4888	c.4493C>T	c.(4492-4494)GCT>GTT	p.A1498V	PCDH15_uc010qhq.1_Missense_Mutation_p.A1491V|PCDH15_uc010qhr.1_Missense_Mutation_p.A1486V|PCDH15_uc010qht.1_Missense_Mutation_p.A1491V|PCDH15_uc010qhu.1_Silent_p.L1510L	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCTTCCTCAGCTTCACCAAC	0.398000										HNSCC(58;0.16)			23	126					0	0	0.000586117	0	0
ANK3	288	broad.mit.edu	37	10	61802491	61802491	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:61802491C>T	uc001jky.2	-	43	13284	c.13092G>A	c.(13090-13092)ACG>ACA	p.T4364T	ANK3_uc001jkw.2_Silent_p.T988T|ANK3_uc009xpa.2_Silent_p.T987T|ANK3_uc001jkx.2_Silent_p.T1031T|ANK3_uc010qih.1_Silent_p.T1855T|ANK3_uc001jkz.3_Silent_p.T1848T|ANK3_uc001jkv.2_Silent_p.T387T	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4364					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTTTCTTCGTTTTCACCT	0.398000													13	94					0	0	0.00185496	0	0
COL13A1	1305	broad.mit.edu	37	10	71654450	71654450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:71654450G>A	uc001jpr.1	+	10	1159	c.623G>A	c.(622-624)GGA>GAA	p.G208E	COL13A1_uc001jqj.1_Missense_Mutation_p.G208E|COL13A1_uc001jps.1_Missense_Mutation_p.G179E|COL13A1_uc001jpt.1_Missense_Mutation_p.G208E|COL13A1_uc001jpu.1_Missense_Mutation_p.G208E|COL13A1_uc001jpv.1_Missense_Mutation_p.G208E|COL13A1_uc001jpx.1_Missense_Mutation_p.G208E|COL13A1_uc001jpw.1_Missense_Mutation_p.G196E|COL13A1_uc001jpy.1_Missense_Mutation_p.G187E|COL13A1_uc001jpz.1_Missense_Mutation_p.G170E|COL13A1_uc001jqa.1_Missense_Mutation_p.G170E|COL13A1_uc001jqc.1_Missense_Mutation_p.G208E|COL13A1_uc001jqb.1_Missense_Mutation_p.G179E|COL13A1_uc001jql.2_Missense_Mutation_p.G208E|COL13A1_uc001jqd.1_Missense_Mutation_p.G196E|COL13A1_uc001jqe.1_Missense_Mutation_p.G191E|COL13A1_uc001jqf.1_Missense_Mutation_p.G208E|COL13A1_uc001jqg.1_Missense_Mutation_p.G208E|COL13A1_uc001jqh.1_Missense_Mutation_p.G208E|COL13A1_uc001jqi.1_Missense_Mutation_p.G208E|COL13A1_uc010qjf.1_Missense_Mutation_p.G17E|COL13A1_uc001jqk.1_Missense_Mutation_p.G68E	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	208	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	GGACAAAAAGGAGAAAAGGTA	0.463000													14	55					0	0	0.000958276	0	0
SLC29A3	55315	broad.mit.edu	37	10	73121807	73121807	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:73121807C>T	uc001jrr.3	+	6	927	c.870C>T	c.(868-870)TTC>TTT	p.F290F	SLC29A3_uc001jrs.3_3'UTR|SLC29A3_uc010qjq.1_Silent_p.F144F|SLC29A3_uc001jrt.3_Silent_p.F84F|SLC29A3_uc001jru.3_Silent_p.F102F	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	290	Cytoplasmic (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CCTCCAGATTCATTGATTCCC	0.577000													8	52					0	0	0.000157383	0	0
FUT11	170384	broad.mit.edu	37	10	75535399	75535399	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:75535399T>C	uc001jva.2	+	3	1478	c.1435T>C	c.(1435-1437)TGG>CGG	p.W479R	FUT11_uc001juz.1_3'UTR	NM_173540	NP_775811	Q495W5	FUT11_HUMAN	fucosyltransferase 11 (alpha (1,3)	479	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity				0	Prostate(51;0.0112)					GACGAAATTTTGGGATTACCT	0.453000													9	71					0	0	0.000673444	0	0
DLG5	9231	broad.mit.edu	37	10	79566601	79566601	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:79566601G>A	uc001jzk.2	-	26	4952	c.4882C>T	c.(4882-4884)CAG>TAG	p.Q1628*	DLG5_uc001jzi.2_Nonsense_Mutation_p.Q383*|DLG5_uc001jzj.2_Nonsense_Mutation_p.Q1043*|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1628	SH3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			AACGTGCCCTGGGGTAAGGTG	0.572000													14	73					0	0	0.000308642	0	0
GLUD1	2746	broad.mit.edu	37	10	88818905	88818905	+	Splice_Site	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:88818905A>C	uc001keh.2	-	10	1499	c.1402_splice	c.e10+1	p.M468_splice	GLUD1_uc001keg.2_Splice_Site_p.M301_splice|GLUD1_uc010qmp.1_Splice_Site_p.M335_splice	NM_005271	NP_005262	P00367	DHE3_HUMAN	glutamate dehydrogenase 1 precursor						glutamate biosynthetic process|glutamate catabolic process|positive regulation of insulin secretion	mitochondrial matrix	ADP binding|ATP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|identical protein binding|leucine binding|NAD+ binding				0					L-Glutamic Acid(DB00142)|NADH(DB00157)	ATCGATACTCACTGAGCAAGT	0.403000													25	128					0	0	0.000878237	0	0
PDE6C	5146	broad.mit.edu	37	10	95399917	95399917	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:95399917G>A	uc001kiu.3	+	12	1711	c.1573G>A	c.(1573-1575)GGA>AGA	p.G525R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	525					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				GATTAAATGTGGAATACGACT	0.413000													6	44					0	0	0.00116845	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454787	96454787	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:96454787G>A	uc001kjv.3	+	4	921	c.595G>A	c.(595-597)GAA>AAA	p.E199K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E199K|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	199					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TAACTTGATGGAAAAATTCAA	0.388000													7	34					0	0	0.000274275	0	0
CYP2C19	1557	broad.mit.edu	37	10	96612490	96612490	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:96612490G>A	uc010qnz.1	+	9	1292	c.1292G>A	c.(1291-1293)GGA>GAA	p.G431E	CYP2C19_uc010qny.1_Missense_Mutation_p.G409E	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	431					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TTATTTTCAGGAAAACGGATT	0.423000													4	30					0	0	0.00024832	0	0
SEC31B	25956	broad.mit.edu	37	10	102249894	102249894	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:102249894C>T	uc001krc.1	-	21	2938	c.2836G>A	c.(2836-2838)GGT>AGT	p.G946S	SEC31B_uc010qpo.1_Missense_Mutation_p.G945S|SEC31B_uc001krd.1_Missense_Mutation_p.G483S|SEC31B_uc001krf.1_Intron|SEC31B_uc001kre.1_Intron	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	946	Pro-rich.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CGGCCGGGACCTAGTGGTCTC	0.627000													18	62					0	0	0.00229938	0	0
CCDC147	159686	broad.mit.edu	37	10	106214254	106214254	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:106214254G>A	uc001kyh.2	+	18	2719	c.2585G>A	c.(2584-2586)GGA>GAA	p.G862E		NM_001008723	NP_001008723	Q5T655	CC147_HUMAN	coiled-coil domain containing 147	862										ovary(2)|central_nervous_system(2)|skin(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;7.55e-10)|all cancers(201;3.37e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0189)		ACTGGGGGCGGATTTCCTCTC	0.463000													11	58					0	0	0.000422831	0	0
SORCS1	114815	broad.mit.edu	37	10	108357136	108357136	+	Missense_Mutation	SNP	G	A	A	rs147754225		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:108357136G>A	uc001kym.2	-	24	3246	c.3238C>T	c.(3238-3240)CTT>TTT	p.L1080F	SORCS1_uc001kyl.2_Missense_Mutation_p.L1080F|SORCS1_uc009xxs.2_Missense_Mutation_p.L1080F|SORCS1_uc001kyn.1_Missense_Mutation_p.L1080F|SORCS1_uc001kyo.2_Missense_Mutation_p.L1080F	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1080	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		GCATGGACAAGGACTCGGACT	0.512000													7	28					0	0	0.000274275	0	0
TCF7L2	6934	broad.mit.edu	37	10	114925412	114925412	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:114925412C>T	uc001lae.3	+	14	1997	c.1490C>T	c.(1489-1491)CCG>CTG	p.P497L	TCF7L2_uc001lac.3_Missense_Mutation_p.P491L|TCF7L2_uc010qrk.1_3'UTR|TCF7L2_uc010qrl.1_Missense_Mutation_p.P474L|TCF7L2_uc010qrm.1_3'UTR|TCF7L2_uc010qrn.1_3'UTR|TCF7L2_uc001lad.3_3'UTR|TCF7L2_uc001lag.3_3'UTR|TCF7L2_uc001laf.3_Missense_Mutation_p.P474L|TCF7L2_uc010qro.1_3'UTR|TCF7L2_uc001lah.2_3'UTR|TCF7L2_uc010qrp.1_3'UTR|TCF7L2_uc010qrq.1_3'UTR|TCF7L2_uc010qrr.1_Missense_Mutation_p.P429L|TCF7L2_uc010qrs.1_Missense_Mutation_p.P385L|TCF7L2_uc010qrt.1_Missense_Mutation_p.P385L|TCF7L2_uc010qru.1_3'UTR|TCF7L2_uc010qrv.1_3'UTR|TCF7L2_uc010qrw.1_3'UTR|TCF7L2_uc010qrx.1_3'UTR	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	514					anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		CCCCCCTCCCCGAACCTGCTA	0.602000													25	168					0	0	0.000878237	0	0
FGFR2	2263	broad.mit.edu	37	10	123263433	123263433	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:123263433G>A	uc010qtk.1	-	11	1957	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	FGFR2_uc010qtg.1_Missense_Mutation_p.S325F|FGFR2_uc010qth.1_Missense_Mutation_p.S322F|FGFR2_uc010qti.1_Missense_Mutation_p.S348F|FGFR2_uc010qtj.1_Missense_Mutation_p.S438F|FGFR2_uc010qtl.1_Missense_Mutation_p.S321F|FGFR2_uc010qtm.1_Missense_Mutation_p.S320F|FGFR2_uc001lfl.3_Missense_Mutation_p.S438F|FGFR2_uc001lfm.2_Missense_Mutation_p.S349F|FGFR2_uc001lfg.3_Missense_Mutation_p.S45F	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	437	Cytoplasmic (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GGAGTTCATGGAGGAGCTGGA	0.552000		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				6	24					0	0	0.00116845	0	0
TACC2	10579	broad.mit.edu	37	10	123847380	123847380	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:123847380G>A	uc001lfv.2	+	4	5725	c.5365G>A	c.(5365-5367)GAT>AAT	p.D1789N	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.D1789N|TACC2_uc010qtv.1_Missense_Mutation_p.D1789N	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1789						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TCCAGCTGGGGATGGGAAGGT	0.622000													10	28					0	0	0.00185496	0	0
DMBT1	1755	broad.mit.edu	37	10	124345794	124345794	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:124345794G>A	uc001lgk.1	+	16	1784	c.1678G>A	c.(1678-1680)GAC>AAC	p.D560N	DMBT1_uc001lgl.1_Missense_Mutation_p.D550N|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.D560N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	560	SRCR 4.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding	p.D560D(1)		central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGTCCTGGATGACGTGCGCTG	0.592000													33	129					0	0	0.00178596	0	0
C10orf120	399814	broad.mit.edu	37	10	124459184	124459184	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr10:124459184C>T	uc001lgn.2	-	1	155	c.123G>A	c.(121-123)CAG>CAA	p.Q41Q		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	41										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GGGCTTGATCCTGAAAGGAAG	0.448000													6	43					0	0	0.00116845	0	0
MUC5B	727897	broad.mit.edu	37	11	1159336	1159336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:1159336G>A	uc009ycr.1	+	12	1439	c.1313G>A	c.(1312-1314)GGA>GAA	p.G438E		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	429	VWFD 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCTGTGCTTGGAGGTGCCCAC	0.642000													17	70					0	0	0.00074312	0	0
SYT8	90019	broad.mit.edu	37	11	1858224	1858224	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:1858224G>A	uc001lue.1	+	8	998	c.870G>A	c.(868-870)AGG>AGA	p.R290R	SYT8_uc001lud.2_Silent_p.R290R|SYT8_uc001luf.1_Silent_p.R276R|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	290	C2 2.|Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGAACCAGAGGAAGTGGAAGA	0.632000													12	56					0	0	0.000978159	0	0
OR51D1	390038	broad.mit.edu	37	11	4661752	4661752	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:4661752G>A	uc010qyk.1	+	1	732	c.732G>A	c.(730-732)CGG>CGA	p.R244R		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	244	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTCCTCTCGGAGGGCAGCAC	0.527000													19	84					0	0	0.000958276	0	0
OR51F1	256892	broad.mit.edu	37	11	4790962	4790962	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:4790962A>T	uc010qyl.1	-	1	186	c.186T>A	c.(184-186)TAT>TAA	p.Y62*		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	62						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGAGGAAATAATACATGGGTT	0.448000													7	24					0	0	0.000157383	0	0
OR51A2	401667	broad.mit.edu	37	11	4976683	4976683	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:4976683G>A	uc010qyt.1	-	1	261	c.261C>T	c.(259-261)TTC>TTT	p.F87F		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATTGAACAGGAAGATGCTTA	0.463000													8	33					0	0	0.000673444	0	0
OR51V1	283111	broad.mit.edu	37	11	5221247	5221247	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:5221247G>A	uc010qyz.1	-	1	684	c.684C>T	c.(682-684)ATC>ATT	p.I228I		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAAGAATCAGGATGTAGGAGA	0.438000													10	51					0	0	0.000442599	0	0
OR51B4	79339	broad.mit.edu	37	11	5322336	5322336	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:5322336G>A	uc010qza.1	-	1	841	c.841C>T	c.(841-843)CCT>TCT	p.P281S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACGAATGGAGGAAAGAGAAAA	0.428000													5	48					0	0	0.00116845	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530614	5530614	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:5530614C>T	uc001may.1	-	2	261	c.175G>A	c.(175-177)GAT>AAT	p.D59N	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	59	Ubiquitin-like.									ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACAAGCTGATCGGGGTGGGCC	0.502000													23	140					0	0	0.000586117	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5664746	5664747	+	Missense_Mutation	DNP	CC	TT	TT	rs148404455	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:5664746_5664747CC>TT	uc001mbf.2	+	14	2580_2581	c.2336_2337CC>TT	c.(2335-2337)TCC>TTT	p.S779F	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Missense_Mutation_p.S425F|TRIM34_uc009yeq.2_Missense_Mutation_p.S180F|TRIM34_uc001mbi.2_Missense_Mutation_p.S425F|TRIM78P_uc009yer.2_Intron	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	779						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		TTGACTCTCTCCATGGCTGTGC	0.455000													15	90					0	0	6.4e-05	0	0
OR10A4	283297	broad.mit.edu	37	11	6898467	6898467	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:6898467G>A	uc010rat.1	+	1	589	c.589G>A	c.(589-591)GAA>AAA	p.E197K		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CTCTGTGTTTGAACTGGAGGC	0.498000													10	65					0	0	0.000978159	0	0
NLRP14	338323	broad.mit.edu	37	11	7091610	7091610	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:7091610G>A	uc001mfb.1	+	11	3392	c.3069G>A	c.(3067-3069)CAG>CAA	p.Q1023Q		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	1023	LRR 11.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ATCTGACACAGAATACCTTAG	0.383000													9	40					0	0	0.000274275	0	0
NLRP10	338322	broad.mit.edu	37	11	7981217	7981217	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:7981217C>T	uc001mfv.1	-	2	1959	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	648							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTTGGTGTTTCCTCTGTCCCT	0.249000													8	38					0	0	0.000274275	0	0
DENND5A	23258	broad.mit.edu	37	11	9225822	9225822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:9225822G>A	uc001mhl.2	-	4	589	c.334C>T	c.(334-336)CCC>TCC	p.P112S	DENND5A_uc010rbw.1_Missense_Mutation_p.P112S|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	112	UDENN.									liver(1)	1						GGCTCCCTGGGATCAGCCTGG	0.498000													10	61					0	0	0.000673444	0	0
MICALCL	84953	broad.mit.edu	37	11	12315279	12315279	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:12315279G>A	uc001mkg.1	+	3	592	c.301G>A	c.(301-303)GAT>AAT	p.D101N		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	101	Interaction with MAPK1 (By similarity).				cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		CCCTGGTGAAGATGGCCTCTC	0.597000													13	100					0	0	0.00136819	0	0
TSG101	7251	broad.mit.edu	37	11	18528434	18528434	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:18528434G>A	uc001mor.2	-	6	644	c.518C>T	c.(517-519)CCA>CTA	p.P173L	TSG101_uc001mos.1_Missense_Mutation_p.P121L|TSG101_uc009yhs.1_RNA	NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	173					cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						GGATGGGTATGGAGAGATTCC	0.343000													12	84					0	0	0.000422831	0	0
SLC17A6	57084	broad.mit.edu	37	11	22391717	22391717	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:22391717G>A	uc001mqk.2	+	8	1437	c.1024G>A	c.(1024-1026)GGA>AGA	p.G342R		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	342	Vesicular (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						GGAAGTCTTTGGATTTGAAAT	0.299000													7	61					0	0	0.000157383	0	0
MYBPC3	4607	broad.mit.edu	37	11	47360879	47360879	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:47360879T>G	uc001nfa.3	-	21	2199	c.2144A>C	c.(2143-2145)AAG>ACG	p.K715T	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	714	Ig-like C2-type 5.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		ACTCACCTTCTTGTCAAACAC	0.592000													16	161					0	0	0.000958276	0	0
FOLH1	2346	broad.mit.edu	37	11	49208318	49208318	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:49208318C>T	uc001ngy.2	-	5	778	c.517G>A	c.(517-519)GAT>AAT	p.D173N	FOLH1_uc001ngz.2_Missense_Mutation_p.D173N|FOLH1_uc009yly.2_Missense_Mutation_p.D158N|FOLH1_uc009ylz.2_Missense_Mutation_p.D158N|FOLH1_uc009yma.2_5'UTR	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	173	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	TACACTAGATCGCCCTGTTGA	0.393000													12	73					0	0	0.00244969	0	0
OR4A15	81328	broad.mit.edu	37	11	55135906	55135906	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:55135906C>T	uc010rif.1	+	1	547	c.547C>T	c.(547-549)CAC>TAC	p.H183Y		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	183	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGGCTTTCTTCACTCATTGGT	0.428000													9	41					0	0	0.000442599	0	0
OR4S2	219431	broad.mit.edu	37	11	55419207	55419207	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:55419207C>T	uc001nhs.1	+	1	828	c.828C>T	c.(826-828)ATC>ATT	p.I276I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				ACACCATTATCACTCCCATGT	0.408000													7	56					0	0	0.000157383	0	0
OR5D14	219436	broad.mit.edu	37	11	55563262	55563262	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:55563262C>T	uc010rim.1	+	1	231	c.231C>T	c.(229-231)TCC>TCT	p.S77S		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	77	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				GTTACTCTTCCATTGTCACTC	0.403000													7	28					0	0	0.00198382	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798785	55798785	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:55798785G>A	uc010riw.1	+	1	891	c.891G>A	c.(889-891)GTG>GTA	p.V297V		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					ACAAGGATGTGAAAAATGCTC	0.313000													6	43					0	0	0.00116845	0	0
OR5T3	390154	broad.mit.edu	37	11	56020261	56020261	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:56020261C>T	uc010rjd.1	+	1	586	c.586C>T	c.(586-588)CTG>TTG	p.L196L		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TACATTTAGCCTGTCCTTCTG	0.433000													20	125					0	0	0.00152264	0	0
OR5M10	390167	broad.mit.edu	37	11	56344634	56344634	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:56344634G>A	uc001niz.1	-	1	564	c.564C>T	c.(562-564)GCC>GCT	p.A188A		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTCAGAGCAGGCCAGCATGA	0.448000													17	56					0	0	0.000422831	0	0
OR5M1	390168	broad.mit.edu	37	11	56380268	56380268	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:56380268G>A	uc001nja.1	-	1	711	c.711C>T	c.(709-711)GCC>GCT	p.A237A		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	237	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ACGTAGAAAAGGCTTTGTGCC	0.448000													6	48					0	0	0.00198382	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57077190	57077190	+	Nonsense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:57077190C>A	uc001njr.2	-	5	3307	c.2995G>T	c.(2995-2997)GAG>TAG	p.E999*	TNKS1BP1_uc001njs.2_Nonsense_Mutation_p.E999*|TNKS1BP1_uc009ymd.1_Nonsense_Mutation_p.E450*	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	999	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				ATCTTCTTCTCAAATTCCTCA	0.592000													10	44					7.48243e-07	2.4521e-06	0.000442599	1	0
P2RX3	5024	broad.mit.edu	37	11	57135556	57135556	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:57135556G>A	uc001nju.2	+	9	992	c.916G>A	c.(916-918)GAC>AAC	p.D306N		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	306	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CATCCGCTTCGACGTGCTGGT	0.567000													8	69					0	0	0.000157383	0	0
PRG3	10394	broad.mit.edu	37	11	57144328	57144328	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:57144328A>T	uc001njv.1	-	6	783	c.673T>A	c.(673-675)TTC>ATC	p.F225I		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	225					basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						CTGGCTTAGAAGGAGCAGACG	0.602000													23	184					0	0	0.00127121	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995973	57995973	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:57995973G>A	uc010rkd.1	-	1	375	c.375C>T	c.(373-375)GAC>GAT	p.D125D		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				CCACATAGCGGTCATAGGCCA	0.607000													5	37					0	0	0.00198382	0	0
OR5B12	390191	broad.mit.edu	37	11	58207275	58207275	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:58207275G>A	uc010rkh.1	-	1	350	c.350C>T	c.(349-351)GCC>GTC	p.A117V		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GCGGTCATAGGCCATTGATGC	0.443000													19	66					0	0	0.000958276	0	0
MS4A4A	51338	broad.mit.edu	37	11	60059804	60059804	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:60059804C>T	uc001noz.2	+	2	158	c.148C>T	c.(148-150)CTG>TTG	p.L50L	MS4A4A_uc001npa.2_Silent_p.L31L|MS4A4A_uc001npb.2_Silent_p.L31L|MS4A4A_uc001npc.2_Silent_p.L31L	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	50	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						ACATTCACATCTGTGGAAAGG	0.502000													9	43					0	0	0.000274275	0	0
DDB1	1642	broad.mit.edu	37	11	61079489	61079489	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:61079489G>A	uc001nrc.3	-	17	2363	c.2137C>T	c.(2137-2139)CGC>TGC	p.R713C	DDB1_uc010rle.1_Intron|DDB1_uc010rlf.1_Missense_Mutation_p.R713C	NM_001923	NP_001914	Q16531	DDB1_HUMAN	damage-specific DNA binding protein 1	713	Interaction with CDT1.				cell cycle checkpoint|interspecies interaction between organisms|nucleotide-excision repair, DNA damage removal|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex|Cul4B-RING ubiquitin ligase complex|cytoplasm|nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(1)|central_nervous_system(1)	4						GGAACTGTGCGAATGTGCAGC	0.552000								NER					27	149					0	0	0.000878237	0	0
FADS3	3995	broad.mit.edu	37	11	61646236	61646236	+	Silent	SNP	G	A	A	rs115282539	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:61646236G>A	uc001nsm.2	-	4	759	c.606C>T	c.(604-606)TTC>TTT	p.F202F	FADS3_uc001nsn.2_Silent_p.F78F	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	202	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						GCCCCATCACGAACTTCTGGG	0.642000													8	22					0	0	0.000442599	0	0
MTA2	9219	broad.mit.edu	37	11	62365529	62365529	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:62365529A>G	uc001ntq.1	-	6	838	c.457T>C	c.(457-459)TAC>CAC	p.Y153H	MTA2_uc010rlx.1_5'UTR	NM_004739	NP_004730	O94776	MTA2_HUMAN	metastasis-associated protein 2	153	ELM2.				chromatin assembly or disassembly	NuRD complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCAGCTTGGTATTTGCAACCA	0.378000													30	150					0	0	0.00178596	0	0
HRASLS5	117245	broad.mit.edu	37	11	63233675	63233675	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:63233675C>T	uc001nwy.2	-	5	828	c.654G>A	c.(652-654)AAG>AAA	p.K218K	HRASLS5_uc001nwz.2_Silent_p.K208K|HRASLS5_uc010rmq.1_Silent_p.K218K|HRASLS5_uc009yos.2_RNA	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	218										ovary(1)	1						TGTTGACCATCTTTTTTGTAC	0.527000													15	78					0	0	0.000308642	0	0
LGALS12	85329	broad.mit.edu	37	11	63283158	63283158	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:63283158C>T	uc001nxa.2	+	8	1178	c.837C>T	c.(835-837)TTC>TTT	p.F279F	LGALS12_uc001nxb.2_Silent_p.F270F|LGALS12_uc001nxc.2_Silent_p.F280F|LGALS12_uc001nxd.2_Silent_p.F218F|LGALS12_uc001nxe.2_Silent_p.F209F|LGALS12_uc009yot.2_Silent_p.F239F	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	279	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CAGCCCCCTTCCTCTTTTACC	0.552000													6	40					0	0	0.00116845	0	0
CCDC88B	283234	broad.mit.edu	37	11	64109548	64109548	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:64109548C>T	uc001nzy.2	+	8	802	c.758C>T	c.(757-759)TCG>TTG	p.S253L	CCDC88B_uc009ypo.1_Missense_Mutation_p.S250L|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	253	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GAGGGCCCCTCGCACCATCTG	0.677000													6	19					0	0	0.00198382	0	0
NRXN2	9379	broad.mit.edu	37	11	64418075	64418075	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:64418075G>A	uc001oar.2	-	16	3393	c.2954C>T	c.(2953-2955)CCG>CTG	p.P985L	NRXN2_uc001oas.2_Missense_Mutation_p.P945L|NRXN2_uc001oaq.2_Missense_Mutation_p.P652L	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CATCAAGGACGGGCCATTCCC	0.587000											OREG0021057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	64					0	0	0.00188189	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64593978	64593978	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:64593978G>A	uc001obs.3	-	36	4563	c.4563C>T	c.(4561-4563)CCC>CCT	p.P1521P		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1521					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						GCGATCCCTGGGGGCAGGACA	0.562000													3	12					0	0	6.4e-05	0	0
MAP3K11	4296	broad.mit.edu	37	11	65373447	65373447	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:65373447G>A	uc001oew.2	-	7	2202	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F	MAP3K11_uc001oev.2_5'UTR|MAP3K11_uc010rol.1_Missense_Mutation_p.S313F|MAP3K11_uc001oex.1_Missense_Mutation_p.S77F	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	570					activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						AGGCTTGGGGGAACTGGGACC	0.627000													4	26					0	0	0.00024832	0	0
CTSW	1521	broad.mit.edu	37	11	65649961	65649961	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:65649961A>G	uc001ogc.1	+	5	544	c.502A>G	c.(502-504)ATC>GTC	p.I168V	CTSW_uc001ogb.1_Missense_Mutation_p.I168V	NM_001335	NP_001326	P56202	CATW_HUMAN	cathepsin W preproprotein	168					immune response|proteolysis		cysteine-type endopeptidase activity			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.168)		CCTGTGGCGCATCAGTTTCTG	0.637000													9	60					0	0	0.000274275	0	0
RAB1B	81876	broad.mit.edu	37	11	66043344	66043344	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:66043344C>T	uc001ohf.2	+	5	444	c.349C>T	c.(349-351)CTC>TTC	p.L117F	uc001ohg.1_Intron|CNIH2_uc001ohh.2_5'Flank|CNIH2_uc001ohi.1_5'Flank|CNIH2_uc009yrb.1_5'Flank	NM_030981	NP_112243	Q9H0U4	RAB1B_HUMAN	RAB1B, member RAS oncogene family	117					protein transport|small GTPase mediated signal transduction	Golgi apparatus|membrane	GTP binding|protein binding				0						CGTCAATAAGCTCCTGGTGGG	0.597000													4	20					0	0	0.00024832	0	0
PITPNM1	9600	broad.mit.edu	37	11	67264878	67264878	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:67264878G>A	uc001olx.2	-	13	2159	c.1970C>T	c.(1969-1971)TCC>TTC	p.S657F	PITPNM1_uc001olw.2_5'UTR|PITPNM1_uc001oly.2_Missense_Mutation_p.S657F|PITPNM1_uc001olz.2_Missense_Mutation_p.S657F	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	657					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						GGGCTCCCAGGAGGAGGTGGT	0.682000													8	56					0	0	0.000157383	0	0
LOC645332	645332	broad.mit.edu	37	11	67560735	67560735	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:67560735G>A	uc001omt.3	-	4	362	c.339C>T	c.(337-339)AAC>AAT	p.N113N	LOC645332_uc001omu.3_Silent_p.N63N	NR_024249				SubName: Full=cDNA FLJ57700, weakly similar to Protein FAM86A;												0						TCATGACGAGGTTCCACTTCC	0.527000													21	93					0	0	0.00188189	0	0
SHANK2	22941	broad.mit.edu	37	11	70348958	70348958	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:70348958G>A	uc001oqc.2	-	15	2218	c.2140C>T	c.(2140-2142)CTT>TTT	p.L714F	SHANK2_uc010rqn.1_Missense_Mutation_p.L126F|SHANK2_uc001opz.2_Missense_Mutation_p.L126F|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.L126F|SHANK2_uc001opy.2_5'Flank|SHANK2_uc010rqo.1_5'Flank	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	335	PDZ.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACCACCTTAAGGACCAGGTGA	0.587000													17	104					0	0	0.000958276	0	0
HEPHL1	341208	broad.mit.edu	37	11	93754685	93754685	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:93754685A>G	uc001pep.2	+	1	308	c.151A>G	c.(151-153)AAA>GAA	p.K51E		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	51	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TATTACTGGGAAAAGTTTCAC	0.448000													20	115					0	0	0.00229938	0	0
HEPHL1	341208	broad.mit.edu	37	11	93826788	93826788	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:93826788G>A	uc001pep.2	+	13	2573	c.2416G>A	c.(2416-2418)GAG>AAG	p.E806K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	806	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				ACCACGAGAGGAGCACTTAGA	0.493000													15	68					0	0	0.000308642	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101773424	101773424	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:101773424G>A	uc001pgl.2	-	6	1064	c.468C>T	c.(466-468)ACC>ACT	p.T156T		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	156	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		CAGAGCCAATGGTATCCTTAA	0.343000													17	95					0	0	0.000958276	0	0
MMP3	4314	broad.mit.edu	37	11	102710958	102710958	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:102710958G>A	uc001phj.1	-	6	881	c.816C>T	c.(814-816)ACC>ACT	p.T272T		NM_002422	NP_002413	P08254	MMP3_HUMAN	matrix metalloproteinase 3 preproprotein	272					collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			lung(1)|kidney(1)	2		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0142)	Marimastat(DB00786)|Simvastatin(DB00641)	GTACCAGGGGGGTCTCAGGGG	0.522000													5	35					0	0	0.000602214	0	0
KIAA1826	84437	broad.mit.edu	37	11	105880737	105880737	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:105880737G>A	uc001piy.2	-	3	736	c.563C>T	c.(562-564)ACC>ATC	p.T188I	KIAA1826_uc001piz.2_Missense_Mutation_p.T188I	NM_032424	NP_115800	Q8NCY6	K1826_HUMAN	hypothetical protein LOC84437	188						nucleus				breast(1)	1		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.56e-05)|Epithelial(105;0.00432)|all cancers(92;0.0309)		TGAGTTAAGGGTAAAAAACTC	0.398000													14	84					0	0	0.000308642	0	0
NNMT	4837	broad.mit.edu	37	11	114182868	114182868	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:114182868C>T	uc001por.1	+	5	728	c.464C>T	c.(463-465)CCC>CTC	p.P155L	NNMT_uc001pos.1_Missense_Mutation_p.P155L	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	155					xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	GTCCCCTTACCCCCGGCTGAC	0.627000													15	82					0	0	0.000422831	0	0
SIK3	23387	broad.mit.edu	37	11	116729133	116729133	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:116729133G>A	uc001ppy.2	-	20	2766	c.2730C>T	c.(2728-2730)ATC>ATT	p.I910I	SIK3_uc001ppz.2_Silent_p.I749I|SIK3_uc001pqa.2_Silent_p.I850I|SIK3_uc001ppw.2_Silent_p.I267I|SIK3_uc001ppx.2_Silent_p.I288I|SIK3_uc001pqb.2_Silent_p.I213I	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	910	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						GTCCTTGAAGGATGTGGGGTA	0.557000													121	686					0	0	0.000781405	0	0
UBE4A	9354	broad.mit.edu	37	11	118239374	118239374	+	Silent	SNP	G	T	T	rs142300826		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:118239374G>T	uc001psw.2	+	3	279	c.150G>T	c.(148-150)TCG>TCT	p.S50S	UBE4A_uc001psv.2_Silent_p.S50S	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	50					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		CAGATGACTCGGATAATAGCG	0.433000													6	336					0.000157383	0.000513445	0.000157383	1	0
PHLDB1	23187	broad.mit.edu	37	11	118516461	118516461	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:118516461G>A	uc001ptr.1	+	18	3778	c.3425G>A	c.(3424-3426)GGT>GAT	p.G1142D	PHLDB1_uc001pts.2_Missense_Mutation_p.G1142D|PHLDB1_uc001ptt.2_Missense_Mutation_p.G1095D|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.G957D|PHLDB1_uc001ptw.1_Missense_Mutation_p.G497D|PHLDB1_uc009zai.1_Missense_Mutation_p.G178D|PHLDB1_uc001ptx.1_Missense_Mutation_p.G178D|PHLDB1_uc010ryi.1_3'UTR	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	1142											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		AGCGCGAGTGGTCTGGACATG	0.602000													9	105					0	0	0.000673444	0	0
TECTA	7007	broad.mit.edu	37	11	120989022	120989022	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:120989022C>T	uc010rzo.1	+	6	798	c.798C>T	c.(796-798)TTC>TTT	p.F266F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	266	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAGGACAATTCCTTCGGCGAG	0.313000													6	51					0	0	0.00116845	0	0
SORL1	6653	broad.mit.edu	37	11	121491883	121491883	+	Silent	SNP	G	A	A	rs3134566		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:121491883G>A	uc001pxx.2	+	44	6080	c.6000G>A	c.(5998-6000)GGG>GGA	p.G2000G	SORL1_uc010rzp.1_Silent_p.G846G|SORL1_uc010rzq.1_Silent_p.G615G	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2000	Extracellular (Potential).|Fibronectin type-III 5.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		AGCCTGGCGGGAAATACCACA	0.443000													11	75					0	0	0.000673444	0	0
OR8D1	283159	broad.mit.edu	37	11	124179850	124179850	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:124179850C>T	uc010sag.1	-	1	813	c.813G>A	c.(811-813)GAG>GAA	p.E271E		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		AGGACACCTTCTCCTGGTCCA	0.463000													9	27					0	0	0.000978159	0	0
OR8B8	26493	broad.mit.edu	37	11	124310895	124310895	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:124310895G>A	uc010sal.1	-	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CTAGAAACAGGAAGAAGAGGG	0.507000													7	63					0	0	0.000157383	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130278772	130278772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:130278772C>T	uc001qgg.3	-	7	2172	c.1814G>A	c.(1813-1815)GGG>GAG	p.G605E	ADAMTS8_uc001qgf.2_Missense_Mutation_p.G86E	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	605	Cys-rich.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CAGGAGATTCCCGTCCATGTC	0.557000													15	92					0	0	0.000308642	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130288957	130288957	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:130288957G>A	uc001qgg.3	-	2	1309	c.951C>T	c.(949-951)CTC>CTT	p.L317L		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	317	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CCTGTCTGGTGAGCAGGATGG	0.622000													14	118					0	0	0.00244969	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130289092	130289092	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:130289092G>A	uc001qgg.3	-	2	1174	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	272	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CATCTTCTACGATCAGCACTT	0.527000													25	128					0	0	0.000720815	0	0
WNT5B	81029	broad.mit.edu	37	12	1748967	1748967	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:1748967C>T	uc009zdq.2	+	4	688	c.446C>T	c.(445-447)CCC>CTC	p.P149L	WNT5B_uc001qjj.2_Missense_Mutation_p.P149L|WNT5B_uc001qjk.2_Missense_Mutation_p.P149L|WNT5B_uc001qjl.2_Missense_Mutation_p.P149L	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	149					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			ACGGCGCGGCCCAAGGACCTG	0.721000													8	40					0	0	0.000442599	0	0
CACNA1C	775	broad.mit.edu	37	12	2224601	2224601	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:2224601G>A	uc009zdu.1	+	2	574	c.261G>A	c.(259-261)GGG>GGA	p.G87G	CACNA1C_uc009zdv.1_Silent_p.G87G|CACNA1C_uc001qkb.2_Silent_p.G87G|CACNA1C_uc001qkc.2_Silent_p.G87G|CACNA1C_uc001qke.2_Silent_p.G87G|CACNA1C_uc001qkf.2_Silent_p.G87G|CACNA1C_uc001qjz.2_Silent_p.G87G|CACNA1C_uc001qkd.2_Silent_p.G87G|CACNA1C_uc001qkg.2_Silent_p.G87G|CACNA1C_uc009zdw.1_Silent_p.G87G|CACNA1C_uc001qkh.2_Silent_p.G87G|CACNA1C_uc001qkl.2_Silent_p.G87G|CACNA1C_uc001qkn.2_Silent_p.G87G|CACNA1C_uc001qko.2_Silent_p.G87G|CACNA1C_uc001qkp.2_Silent_p.G87G|CACNA1C_uc001qkr.2_Silent_p.G87G|CACNA1C_uc001qku.2_Silent_p.G87G|CACNA1C_uc001qkq.2_Silent_p.G87G|CACNA1C_uc001qks.2_Silent_p.G87G|CACNA1C_uc001qkt.2_Silent_p.G87G	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	87	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	AGCAATATGGGAAACCCAAGA	0.657000													8	37					0	0	0.000157383	0	0
FGF23	8074	broad.mit.edu	37	12	4479873	4479873	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:4479873T>G	uc001qmq.1	-	3	538	c.392A>C	c.(391-393)CAG>CCG	p.Q131P		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	131					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			GAAGTGATACTGAGGAGAGTG	0.587000													12	118					0	0	0.000308642	0	0
FGF23	8074	broad.mit.edu	37	12	4479895	4479895	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:4479895A>G	uc001qmq.1	-	3	516	c.370T>C	c.(370-372)TAC>CAC	p.Y124H		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	124					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TAGACGTCGTACCCGTTTTCC	0.597000													11	107					0	0	0.00185496	0	0
GALNT8	26290	broad.mit.edu	37	12	4829910	4829910	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:4829910C>T	uc001qne.1	+	1	159	c.67C>T	c.(67-69)CTC>TTC	p.L23F		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	23	Helical; Signal-anchor for type II membrane protein; (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						TGCTGTCAATCTCCTTCTGGT	0.507000													20	90					0	0	0.00152264	0	0
CLEC4A	50856	broad.mit.edu	37	12	8276533	8276533	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:8276533G>A	uc001qtz.1	+	1	306	c.59G>A	c.(58-60)GGC>GAC	p.G20D	CLEC4A_uc009zga.1_Missense_Mutation_p.G20D|CLEC4A_uc001qub.1_Missense_Mutation_p.G20D|CLEC4A_uc001quc.1_Missense_Mutation_p.G20D|CLEC4A_uc009zgb.1_Missense_Mutation_p.G20D	NM_016184	NP_057268	Q9UMR7	CLC4A_HUMAN	C-type lectin domain family 4, member A isoform	20	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway|innate immune response	integral to plasma membrane	sugar binding|transmembrane receptor activity				0				Kidney(36;0.0915)		AAGTCCTCAGGCATCAACACA	0.418000													7	44					0	0	0.000274275	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715747	13715747	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:13715747C>T	uc001rbt.2	-	13	4604	c.4425G>A	c.(4423-4425)GAG>GAA	p.E1475E		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1475	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TAGAAAGTTTCTCATAAACAT	0.507000													15	127					0	0	0.000422831	0	0
GRIN2B	2904	broad.mit.edu	37	12	13715974	13715974	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:13715974C>T	uc001rbt.2	-	13	4377	c.4198G>A	c.(4198-4200)GGC>AGC	p.G1400S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1400	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GATTTGCTGCCATGGAGCAAG	0.637000													5	47					0	0	0.000602214	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716383	13716383	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:13716383C>T	uc001rbt.2	-	13	3968	c.3789G>A	c.(3787-3789)CTG>CTA	p.L1263L		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1263	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCGGCTGGTCCAGTTCCTGCA	0.592000													16	71					0	0	0.000422831	0	0
GRIN2B	2904	broad.mit.edu	37	12	13717007	13717007	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:13717007C>G	uc001rbt.2	-	13	3344	c.3165G>C	c.(3163-3165)TTG>TTC	p.L1055F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1055	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGAGCGGATCAAGTCGTCGT	0.577000													6	43					0	0	0.000274275	0	0
FAR2	55711	broad.mit.edu	37	12	29460616	29460616	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:29460616G>A	uc001ris.3	+	5	718	c.571G>A	c.(571-573)GAG>AAG	p.E191K	FAR2_uc001rit.2_Missense_Mutation_p.E191K|FAR2_uc009zjm.2_Missense_Mutation_p.E94K|uc001riu.1_Intron	NM_018099	NP_060569	Q96K12	FACR2_HUMAN	fatty acyl CoA reductase 2	191					ether lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor				0						TATTATTGACGAGATTACACC	0.403000													8	66					0	0	0.000442599	0	0
OVCH1	341350	broad.mit.edu	37	12	29630484	29630484	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:29630484C>T	uc001rix.1	-	10	1097	c.1097G>A	c.(1096-1098)GGA>GAA	p.G366E		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	366	CUB 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					GTTTTGTTTTCCATCGTCTTC	0.209000													4	28					0	0	0.00024832	0	0
SYT10	341359	broad.mit.edu	37	12	33579230	33579230	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:33579230C>T	uc001rll.1	-	2	649	c.352G>A	c.(352-354)GAA>AAA	p.E118K	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	118	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTTTCATTTTCCTTAATTTCT	0.408000													14	91					0	0	0.000308642	0	0
ACVR1B	91	broad.mit.edu	37	12	52374763	52374763	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:52374763C>T	uc001rzn.2	+	4	633	c.591C>T	c.(589-591)CTC>CTT	p.L197L	ACVR1B_uc001rzl.2_Silent_p.L197L|ACVR1B_uc001rzm.2_Silent_p.L197L|ACVR1B_uc010snn.1_Silent_p.L197L	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	197	Cytoplasmic (Potential).|GS.				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	GGTTACCCCTCTTTGTCCAGC	0.498000											OREG0021829	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	56					0	0	0.00198382	0	0
KRT85	3891	broad.mit.edu	37	12	52760942	52760942	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:52760942C>T	uc001sag.2	-	1	368	c.248G>A	c.(247-249)CGC>CAC	p.R83H		NM_002283	NP_002274	P78386	KRT85_HUMAN	keratin 85	83	Head.				epidermis development	keratin filament	protein binding|structural molecule activity			ovary(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCCCCGGAGCGGTAGCCGAA	0.692000													13	70					0	0	0.00185496	0	0
KRT84	3890	broad.mit.edu	37	12	52778976	52778976	+	Missense_Mutation	SNP	G	A	A	rs140458726		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:52778976G>A	uc001sah.1	-	1	442	c.394C>T	c.(394-396)CCA>TCA	p.P132S		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	132	Head.					keratin filament	structural constituent of epidermis	p.P132S(1)		skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGGCTGCTGGGACTCCAACC	0.567000													30	143					0	0	0.00178596	0	0
KRT6C	286887	broad.mit.edu	37	12	52862870	52862870	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:52862870G>A	uc001sal.3	-	9	1719	c.1671C>T	c.(1669-1671)TCC>TCT	p.S557S		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	557	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		TCTTCCTGCTGGAGGAGGAGG	0.602000													11	66					0	0	0.00136819	0	0
KRT3	3850	broad.mit.edu	37	12	53189324	53189324	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:53189324C>T	uc001say.2	-	1	569	c.503G>A	c.(502-504)GGG>GAG	p.G168E		NM_057088	NP_476429	P12035	K2C3_HUMAN	keratin 3	168	Gly-rich.|Head.				epithelial cell differentiation|intermediate filament cytoskeleton organization	keratin filament	structural molecule activity				0						CTGAATTCCCCCAGGAAAGCC	0.453000													6	12					0	0	0.00116845	0	0
EIF4B	1975	broad.mit.edu	37	12	53413733	53413733	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:53413733G>A	uc001sbh.3	+	4	606	c.400G>A	c.(400-402)GAG>AAG	p.E134K	EIF4B_uc009zmp.1_RNA|EIF4B_uc010snu.1_Missense_Mutation_p.E134K|EIF4B_uc010snv.1_Intron|EIF4B_uc001sbi.2_5'UTR	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	134	RRM.				insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						CAGCAATCCAGAGAGGTTGAA	0.423000													6	33					0	0	0.00198382	0	0
OR10A7	121364	broad.mit.edu	37	12	55615172	55615172	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:55615172C>T	uc010spf.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						GGCTTATGATCGCTTTGTGGC	0.448000													4	24					0	0	0.00024832	0	0
OR6C2	341416	broad.mit.edu	37	12	55846720	55846720	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:55846720C>T	uc001sgz.1	+	1	723	c.723C>T	c.(721-723)TCC>TCT	p.S241S		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CCTGTTCATCCCACATGATTG	0.418000													6	52					0	0	0.00116845	0	0
OR6C68	403284	broad.mit.edu	37	12	55886277	55886277	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:55886277G>A	uc010spo.1	+	1	131	c.131G>A	c.(130-132)GGG>GAG	p.G44E		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGTGTAACAGGGAAACTGACC	0.393000													12	84					0	0	0.00185496	0	0
IL23A	51561	broad.mit.edu	37	12	56733728	56733728	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:56733728C>T	uc001sla.2	+	4	576	c.410C>T	c.(409-411)CCT>CTT	p.P137L		NM_016584	NP_057668	Q9NPF7	IL23A_HUMAN	interleukin 23, alpha subunit p19 precursor	137					defense response to Gram-negative bacterium|inflammatory response|innate immune response|negative regulation of interleukin-10 production|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to virus|tissue remodeling	interleukin-23 complex	cytokine activity				0						TCCTTTCAGCCTGAGGGTCAC	0.572000													17	133					0	0	0.00121646	0	0
B4GALNT1	2583	broad.mit.edu	37	12	58024844	58024844	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:58024844G>A	uc001spg.1	-	4	841	c.409C>T	c.(409-411)CTC>TTC	p.L137F	B4GALNT1_uc010sru.1_Missense_Mutation_p.L82F|B4GALNT1_uc010srv.1_Missense_Mutation_p.L137F|B4GALNT1_uc001sph.2_Missense_Mutation_p.L137F|B4GALNT1_uc001spi.2_Missense_Mutation_p.L137F	NM_001478	NP_001469	Q00973	B4GN1_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 1	137	Lumenal (Potential).				lipid glycosylation	integral to Golgi membrane|membrane fraction	(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity				0	Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			GGGGCTATGAGCAGCTGGTCA	0.642000													13	55					0	0	0.00136819	0	0
OS9	10956	broad.mit.edu	37	12	58110498	58110498	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:58110498C>T	uc001spj.2	+	9	1075	c.1016C>T	c.(1015-1017)GCA>GTA	p.A339V	OS9_uc010srx.1_Intron|OS9_uc001spk.2_Missense_Mutation_p.A339V|OS9_uc001spl.2_Missense_Mutation_p.A339V|OS9_uc001spm.2_Missense_Mutation_p.A339V|OS9_uc001spn.2_Missense_Mutation_p.A340V|OS9_uc010sry.1_Missense_Mutation_p.A307V|OS9_uc010srz.1_Missense_Mutation_p.A280V	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	339					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			AGCCCTGAGGCAGCAGATTCA	0.507000													15	109					0	0	0.000566183	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741331	81741331	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:81741331C>T	uc001szo.1	-	18	2374	c.2213G>A	c.(2212-2214)CGG>CAG	p.R738Q	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	664										ovary(3)|lung(2)|pancreas(1)	6						GACTCCCATCCGATCCATTTC	0.448000													17	82					0	0	0.000566183	0	0
PPFIA2	8499	broad.mit.edu	37	12	81762578	81762578	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:81762578C>T	uc001szo.1	-	13	1569	c.1408G>A	c.(1408-1410)GAT>AAT	p.D470N	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	396										ovary(3)|lung(2)|pancreas(1)	6						AGAAGTCTATCAACCGTATCC	0.353000													4	20					0	0	0.00024832	0	0
C12orf12	196477	broad.mit.edu	37	12	91348321	91348321	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:91348321G>A	uc001tbj.2	-	1	633	c.199C>T	c.(199-201)CCG>TCG	p.P67S		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	67										central_nervous_system(1)|pancreas(1)	2						TGTTGCTTCGGCTGCTTCCTT	0.652000													5	32					0	0	0.000602214	0	0
HAL	3034	broad.mit.edu	37	12	96371823	96371823	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:96371823G>A	uc001tem.1	-	18	1850	c.1553C>T	c.(1552-1554)TCT>TTT	p.S518F	HAL_uc009zti.1_RNA|HAL_uc010suw.1_Missense_Mutation_p.S310F|HAL_uc010sux.1_Missense_Mutation_p.S518F	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	518					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	GGAGTCAACAGACGAGGGATG	0.572000													6	48					0	0	0.00116845	0	0
UTP20	27340	broad.mit.edu	37	12	101703550	101703550	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:101703550C>T	uc001tia.1	+	19	2320	c.2164C>T	c.(2164-2166)CGT>TGT	p.R722C		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	722					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GGTGCCGCTTCGTTATTTGTT	0.358000													19	140					0	0	0.00121646	0	0
UTP20	27340	broad.mit.edu	37	12	101755810	101755810	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:101755810T>C	uc001tia.1	+	44	5918	c.5762T>C	c.(5761-5763)TTG>TCG	p.L1921S		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1921					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						GTCGGAGATTTGGACTCTTGT	0.398000													24	148					0	0	0.00047179	0	0
STAB2	55576	broad.mit.edu	37	12	104069737	104069737	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:104069737G>A	uc001tjw.2	+	24	2770	c.2584G>A	c.(2584-2586)GGA>AGA	p.G862R		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	862	Extracellular (Potential).|EGF-like 7.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGAAGGAGATGGAACTCTGTG	0.498000													5	47					0	0	0.000602214	0	0
MTERFD3	80298	broad.mit.edu	37	12	107372306	107372306	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:107372306G>A	uc001tme.1	-	2	2006	c.187C>T	c.(187-189)CGT>TGT	p.R63C	MTERFD3_uc001tmf.1_Missense_Mutation_p.R63C|MTERFD3_uc001tmg.1_Missense_Mutation_p.R63C|MTERFD3_uc001tmh.1_Missense_Mutation_p.R63C	NM_025198	NP_079474	Q49AM1	MTER3_HUMAN	transcription termination factor-like protein	63					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	transcription regulatory region DNA binding				0						TTTAATCTACGAATTTTCCTA	0.368000													14	97					0	0	0.000422831	0	0
ACACB	32	broad.mit.edu	37	12	109629452	109629452	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:109629452C>T	uc001tob.2	+	14	2298	c.2179C>T	c.(2179-2181)CGA>TGA	p.R727*	ACACB_uc001toc.2_Nonsense_Mutation_p.R727*	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	727	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	ACTGTCCATCCGAGGCGACTT	0.488000													13	101					0	0	0.000308642	0	0
UBE3B	89910	broad.mit.edu	37	12	109967761	109967761	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:109967761C>T	uc001top.2	+	25	3297	c.2694C>T	c.(2692-2694)GCC>GCT	p.A898A	UBE3B_uc001toq.2_Silent_p.A898A|UBE3B_uc001tos.2_Silent_p.A325A|UBE3B_uc001tot.2_Silent_p.A16A|UBE3B_uc010sxp.1_Silent_p.A16A	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	898	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						AAACAGCTGCCCTCATTAGCG	0.438000													12	78					0	0	0.00136819	0	0
RNFT2	84900	broad.mit.edu	37	12	117271707	117271707	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:117271707C>T	uc009zwn.2	+	8	1226	c.993C>T	c.(991-993)TTC>TTT	p.F331F	RNFT2_uc001twb.3_Silent_p.F331F|RNFT2_uc001twa.3_Silent_p.F241F|RNFT2_uc001twc.3_Silent_p.F79F	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	331	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		ACAGCTACTTCCTGGGCGGGG	0.592000													6	33					0	0	0.000157383	0	0
SRRM4	84530	broad.mit.edu	37	12	119554778	119554778	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:119554778G>A	uc001txa.1	+	4	694	c.402G>A	c.(400-402)AAG>AAA	p.K134K		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	134	Ser-rich.|Lys-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						TCAAGAAAAAGAAGAAGAAAA	0.488000													6	40					0	0	0.00198382	0	0
C12orf43	64897	broad.mit.edu	37	12	121442062	121442063	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:121442062_121442063CC>AA	uc001tzh.1	-	6	705_706	c.682_683GG>TT	c.(682-684)GGG>TTG	p.G228L	C12orf43_uc009zxa.1_Missense_Mutation_p.G259L|C12orf43_uc010szo.1_Missense_Mutation_p.G187L|C12orf43_uc010szp.1_Missense_Mutation_p.G218L|C12orf43_uc001tzi.1_Missense_Mutation_p.G229L	NM_022895	NP_075046	Q96C57	CL043_HUMAN	hypothetical protein LOC64897	228	Lys-rich.										0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACCTGGTCCCCGTTGAGCTCA	0.559000													13	875					0	0	6.4e-05	0	0
PITPNM2	57605	broad.mit.edu	37	12	123477212	123477212	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:123477212G>A	uc001uej.1	-	15	2377	c.2238C>T	c.(2236-2238)TTC>TTT	p.F746F	PITPNM2_uc001uek.1_Silent_p.F746F	NM_020845	NP_065896	Q9BZ72	PITM2_HUMAN	phosphatidylinositol transfer protein,	746	DDHD.				metabolic process|transport	endomembrane system|integral to membrane|intracellular membrane-bounded organelle	calcium ion binding|lipid binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.55e-05)|Epithelial(86;8.43e-05)|BRCA - Breast invasive adenocarcinoma(302;0.123)		GCCGCAGCTGGAAAACTGGGG	0.662000													8	58					0	0	0.000157383	0	0
DHX37	57647	broad.mit.edu	37	12	125441678	125441678	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:125441678T>A	uc001ugy.2	-	17	2260	c.2161A>T	c.(2161-2163)ATC>TTC	p.I721F		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	721							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		GGGAAGTTGATGACCTGGGAC	0.632000													10	89					0	0	0.000978159	0	0
GLT1D1	144423	broad.mit.edu	37	12	129383812	129383812	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:129383812G>A	uc010tbh.1	+	4	331	c.322G>A	c.(322-324)GAA>AAA	p.E108K	GLT1D1_uc001uhx.1_Missense_Mutation_p.E119K|GLT1D1_uc001uhy.1_Intron	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	119					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		GTCAATGAAGGAAATGGCACA	0.378000													15	87					0	0	0.000958276	0	0
GPR133	283383	broad.mit.edu	37	12	131616322	131616322	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:131616322C>T	uc001uit.3	+	21	2787	c.2228C>T	c.(2227-2229)GCC>GTC	p.A743V	GPR133_uc010tbm.1_Missense_Mutation_p.A775V|GPR133_uc009zyo.2_Missense_Mutation_p.A25V|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	743	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		CAGATCAGCGCCGACAACTAC	0.572000													5	51					0	0	0.000157383	0	0
TUBA3C	7278	broad.mit.edu	37	13	19748170	19748170	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:19748170C>T	uc009zzj.2	-	5	1235	c.1186G>A	c.(1186-1188)GAT>AAT	p.D396N		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	396					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TACATGAGATCGAACTTATGG	0.642000													13	117					0	0	0.000308642	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751676	19751676	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:19751676G>A	uc009zzj.2	-	4	496	c.447C>T	c.(445-447)TTC>TTT	p.F149F		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	149					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		GCAGAGATGCGAACCCAGAGC	0.567000													11	71					0	0	0.000673444	0	0
TPTE2	93492	broad.mit.edu	37	13	20067628	20067628	+	Missense_Mutation	SNP	C	T	T	rs140148307		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:20067628C>T	uc001umd.2	-	3	236	c.25G>A	c.(25-27)GAA>AAA	p.E9K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.E9K|TPTE2_uc001ume.2_Missense_Mutation_p.E9K|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	9						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		CCTTTAAATTCGTTTGTCTGT	0.358000													14	108					0	0	0.000308642	0	0
MTUS2	23281	broad.mit.edu	37	13	29600504	29600504	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:29600504G>A	uc001usl.3	+	1	1757	c.1699G>A	c.(1699-1701)GAT>AAT	p.D567N		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	557						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CAGTTTTCAGGATGTTAGCGT	0.522000													14	96					0	0	0.000308642	0	0
DCLK1	9201	broad.mit.edu	37	13	36401880	36401880	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:36401880G>A	uc001uvf.2	-	10	1532	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I	DCLK1_uc001uve.3_Silent_p.I126I|DCLK1_uc010teh.1_Silent_p.I126I|DCLK1_uc010abk.2_Intron	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	433	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		CTTCATTCTGGATCATGTGCT	0.393000													12	65					0	0	0.000422831	0	0
SPG20	23111	broad.mit.edu	37	13	36888536	36888536	+	Silent	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:36888536A>G	uc001uvn.2	-	7	1581	c.1311T>C	c.(1309-1311)GGT>GGC	p.G437G	SPG20_uc010ten.1_Silent_p.G427G|SPG20_uc001uvm.2_Silent_p.G437G|SPG20_uc001uvo.2_Silent_p.G437G|SPG20_uc001uvq.2_Silent_p.G437G	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	437					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		CTTTGACTAAACCCCAACTCA	0.383000													7	48					0	0	0.000157383	0	0
FREM2	341640	broad.mit.edu	37	13	39263138	39263138	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:39263138T>C	uc001uwv.2	+	1	1966	c.1657T>C	c.(1657-1659)TTA>CTA	p.L553L		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	553	CSPG 3.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CCCCATCACCTTAGTGCCTGT	0.587000													5	25					0	0	0.00116845	0	0
ZC3H13	23091	broad.mit.edu	37	13	46559573	46559573	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:46559573G>A	uc010tfw.1	-	9	1585	c.1579C>T	c.(1579-1581)CGG>TGG	p.R527W	ZC3H13_uc001vas.1_Missense_Mutation_p.R527W|ZC3H13_uc001vat.1_Missense_Mutation_p.R527W	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	527	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CCATAACTCCGGGATTCTTCT	0.453000													10	66					0	0	0.000673444	0	0
C13orf18	80183	broad.mit.edu	37	13	46946262	46946262	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:46946262G>A	uc010acl.2	-	3	954	c.349C>T	c.(349-351)CCC>TCC	p.P117S	C13orf18_uc001vbf.3_Missense_Mutation_p.P50S|C13orf18_uc001vbg.3_5'UTR|C13orf18_uc010tfz.1_Intron|C13orf18_uc010acm.2_5'UTR|C13orf18_uc010acn.2_Intron|C13orf18_uc001vbe.3_Missense_Mutation_p.P117S|C13orf18_uc001vbh.3_Missense_Mutation_p.P117S|C13orf18_uc001vbi.3_Intron|C13orf18_uc010aco.1_Missense_Mutation_p.P117S|C13orf18_uc010tga.1_Missense_Mutation_p.P50S	NM_025113	NP_079389	Q9H714	CM018_HUMAN	hypothetical protein LOC80183	117	Ser-rich.										0		Lung NSC(96;2.31e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;2.19e-05)		GAGCCATGGGGAGAAGCGCTG	0.582000													9	69					0	0	0.000274275	0	0
PCDH17	27253	broad.mit.edu	37	13	58207500	58207500	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:58207500C>G	uc001vhq.1	+	1	1712	c.820C>G	c.(820-822)CCC>GCC	p.P274A	PCDH17_uc010aec.1_Missense_Mutation_p.P274A	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	274	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CGATGAAGGTCCCAATGGTGA	0.607000													11	58					0	0	0.000978159	0	0
DACH1	1602	broad.mit.edu	37	13	72131213	72131213	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:72131213C>T	uc010thn.1	-	7	1936	c.1513G>A	c.(1513-1515)GGA>AGA	p.G505R	DACH1_uc010tho.1_Intron|DACH1_uc010thp.1_Intron	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	557					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		GCCAAATCTCCCTCTTTGGGC	0.418000													6	40					0	0	0.00116845	0	0
DZIP1	22873	broad.mit.edu	37	13	96237103	96237103	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:96237103C>T	uc001vmk.2	-	22	3263	c.2411G>A	c.(2410-2412)GGA>GAA	p.G804E	DZIP1_uc001vmi.2_Missense_Mutation_p.G52E|DZIP1_uc001vmj.2_Missense_Mutation_p.G280E|DZIP1_uc001vml.2_Missense_Mutation_p.G785E|DZIP1_uc001vmm.2_5'Flank	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	804					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AGATTTTTTTCCCAAAGATAT	0.428000													16	66					0	0	0.000422831	0	0
GPR18	2841	broad.mit.edu	37	13	99907258	99907258	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:99907258G>A	uc001voe.3	-	3	1370	c.869C>T	c.(868-870)TCA>TTA	p.S290L	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.S290L	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	290	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	AAATTGTTTTGAAACGATGTA	0.468000													14	63					0	0	0.00244969	0	0
NALCN	259232	broad.mit.edu	37	13	101763545	101763545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:101763545G>A	uc001vox.1	-	19	2414	c.2225C>T	c.(2224-2226)TCA>TTA	p.S742L		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	742	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CCCCTCAAATGATCCGCTCAG	0.493000													12	59					0	0	0.00136819	0	0
SLC10A2	6555	broad.mit.edu	37	13	103698539	103698539	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:103698539C>T	uc001vpy.3	-	6	1588	c.991G>A	c.(991-993)GAG>AAG	p.E331K		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	331	Cytoplasmic (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GACTCTGGCTCCGTTCCATTT	0.373000													5	30					0	0	0.00116845	0	0
SLC10A2	6555	broad.mit.edu	37	13	103718278	103718278	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr13:103718278C>T	uc001vpy.3	-	1	919	c.322G>A	c.(322-324)GGA>AGA	p.G108R		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	108	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GCAGTTCCTCCAGGGCAGCAT	0.507000													11	67					0	0	0.000978159	0	0
OR4M1	441670	broad.mit.edu	37	14	20249284	20249284	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:20249284C>T	uc010tku.1	+	1	803	c.803C>T	c.(802-804)TCC>TTC	p.S268F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GACTCATTTTCCCTAGATAAA	0.418000													7	53					0	0	0.000274275	0	0
SUPT16H	11198	broad.mit.edu	37	14	21836515	21836516	+	Silent	DNP	AA	GT	GT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:21836515_21836516AA>GT	uc001wao.2	-	7	1206_1207	c.867_868TT>AC	c.(865-870)ACTTTG>ACACTG	p.289_290TL>TL		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	289_290					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		TCAACCATCAAAGTGCGAACAA	0.426000													7	50					0	0	6.4e-05	0	0
EFS	10278	broad.mit.edu	37	14	23828855	23828856	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:23828855_23828856CC>TT	uc001wjo.2	-	4	1439_1440	c.831_832GG>AA	c.(829-834)CAGGAC>CAAAAC	p.D278N	EFS_uc001wjp.2_Missense_Mutation_p.D185N|EFS_uc010tnm.1_Missense_Mutation_p.D109N	NM_005864	NP_005855	O43281	EFS_HUMAN	embryonal Fyn-associated substrate isoform 1	278	Pro-rich.				cell adhesion|intracellular signal transduction	cytoplasm	SH3 domain binding			large_intestine(1)	1	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00649)		GCCAGGGTGTCCTGGTCATGGG	0.708000													5	40					0	0	6.4e-05	0	0
LRRC16B	90668	broad.mit.edu	37	14	24529202	24529203	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:24529202_24529203CC>TT	uc001wlj.2	+	23	2049_2050	c.1892_1893CC>TT	c.(1891-1893)TCC>TTT	p.S631F	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	631										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CGCTTCATGTCCTTCCCCGTGA	0.649000													14	97					0	0	6.4e-05	0	0
AKAP6	9472	broad.mit.edu	37	14	33015010	33015010	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:33015010C>T	uc001wrq.2	+	4	1321	c.1151C>T	c.(1150-1152)CCC>CTC	p.P384L	AKAP6_uc010aml.2_Missense_Mutation_p.P381L	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	384					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GAGGACTCTCCCACGCAGCCT	0.418000													10	43					0	0	0.000673444	0	0
RTN1	6252	broad.mit.edu	37	14	60194250	60194250	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:60194250G>A	uc001xen.1	-	3	1361	c.1152C>T	c.(1150-1152)CCC>CCT	p.P384P	RTN1_uc001xem.1_5'UTR	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	384					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CCTTGACCTCGGGCCTGTCGG	0.652000													4	13					0	0	0.000602214	0	0
KCNH5	27133	broad.mit.edu	37	14	63175027	63175027	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:63175027C>T	uc001xfx.2	-	11	2217	c.2166G>A	c.(2164-2166)CAG>CAA	p.Q722Q	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	722	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GTGTTGAGCCCTGATTCCGCA	0.572000													14	110					0	0	0.00185496	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633880	70633880	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:70633880C>T	uc001xly.2	-	2	2014	c.1260G>A	c.(1258-1260)AGG>AGA	p.R420R	SLC8A3_uc001xlw.2_Silent_p.R420R|SLC8A3_uc001xlx.2_Silent_p.R420R|SLC8A3_uc001xlz.2_Silent_p.R420R|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	420	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CTCCCCCTTTCCTCACCACTG	0.512000													9	81					0	0	0.000673444	0	0
ALKBH1	8846	broad.mit.edu	37	14	78174243	78174243	+	Silent	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:78174243G>T	uc001xuc.1	-	1	114	c.105C>A	c.(103-105)CCC>CCA	p.P35P	ALKBH1_uc001xud.1_RNA|C14orf156_uc001xue.3_5'Flank	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	35					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		CTGCGGTCCCGGGCCGGCTCT	0.667000													9	60					1.12685e-05	3.68869e-05	0.000274275	1	0
NRXN3	9369	broad.mit.edu	37	14	79175877	79175877	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:79175877C>T	uc001xun.2	+	4	911	c.420C>T	c.(418-420)CTC>CTT	p.L140L	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.L274L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	513	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		TGGAACTCCTCGATGGCAACC	0.502000													12	91					0	0	0.00136819	0	0
DIO2	1734	broad.mit.edu	37	14	80669068	80669068	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:80669068G>A	uc010tvq.1	-	4	1188	c.786C>T	c.(784-786)TTC>TTT	p.F262F	DIO2_uc010tvp.1_Silent_p.F298F|DIO2_uc001xut.2_RNA|DIO2_uc010asx.2_3'UTR|DIO2_uc010tvr.1_Silent_p.F262F|DIO2_uc010asy.2_3'UTR	NM_000793	NP_000784	Q92813	IOD2_HUMAN	deiodinase, iodothyronine, type II isoform a	262					hormone biosynthetic process|selenocysteine incorporation|thyroid hormone generation	integral to membrane|plasma membrane	thyroxine 5'-deiodinase activity|ubiquitin protein ligase binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0281)		ATCTCTTGCTGAAATTCTTCT	0.383000													6	24					0	0	0.00198382	0	0
TC2N	123036	broad.mit.edu	37	14	92249508	92249508	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:92249508C>T	uc001xzu.3	-	12	1600	c.1409G>A	c.(1408-1410)TGG>TAG	p.W470*	TC2N_uc001xzt.3_Nonsense_Mutation_p.W470*|TC2N_uc010auc.2_Nonsense_Mutation_p.W406*|TC2N_uc001xzv.3_Nonsense_Mutation_p.W470*	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	470						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		TGTCTCTTTCCACTGGTTCAC	0.323000													7	78					0	0	0.000274275	0	0
SLC24A4	123041	broad.mit.edu	37	14	92958550	92958550	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:92958550C>T	uc001yak.2	+	16	1655	c.1631C>T	c.(1630-1632)TCC>TTC	p.S544F	SLC24A4_uc001yai.2_Missense_Mutation_p.S497F|SLC24A4_uc010twm.1_Missense_Mutation_p.S542F|SLC24A4_uc001yaj.2_Missense_Mutation_p.S525F|SLC24A4_uc010auj.2_Missense_Mutation_p.S433F|SLC24A4_uc010twn.1_Missense_Mutation_p.S317F|SLC24A4_uc001yan.2_Missense_Mutation_p.S255F	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	561	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		CTGGTCTATTCCGTGGTCCTG	0.512000													26	162					0	0	0.00127121	0	0
ATG2B	55102	broad.mit.edu	37	14	96761443	96761443	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:96761443C>T	uc001yfi.2	-	36	5645	c.5280G>A	c.(5278-5280)AAG>AAA	p.K1760K		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1760										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		GATTTGGCTCCTTTGAGGTAC	0.408000													13	84					0	0	0.00244969	0	0
CYP46A1	10858	broad.mit.edu	37	14	100182517	100182517	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:100182517C>T	uc001ygo.2	+	9	888	c.888C>T	c.(886-888)TTC>TTT	p.F296F	CYP46A1_uc001ygp.2_Silent_p.F143F	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	296					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				TGGACAACTTCGTCACCTTCT	0.542000													9	66					0	0	0.000978159	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408642	105408642	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:105408642C>T	uc010axc.1	-	7	13266	c.13146G>A	c.(13144-13146)CCG>CCA	p.P4382P	AHNAK2_uc001ypx.2_Silent_p.P4282P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4382						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCTGCAGCTTCGGCAGGTGCC	0.602000													25	102					0	0	0.000586117	0	0
ADAM6	8755	broad.mit.edu	37	14	106714441	106714441	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:106714441C>T	uc010tyt.1	-	647		c.19131G>A								Parts of antibodies, mostly variable regions.												0						GGAATCATCTCTTGAGATTGT	0.483000													7	29					0	0	0.000157383	0	0
ADAM6	8755	broad.mit.edu	37	14	106967211	106967211	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:106967211C>T	uc010tyt.1	-	201		c.9230G>A								Parts of antibodies, mostly variable regions.												0						TCCACTCAAGCCCTTGTCCAG	0.552000													15	91					0	0	0.000308642	0	0
ADAM6	8755	broad.mit.edu	37	14	106967407	106967407	+	RNA	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr14:106967407T>A	uc010tyt.1	-	201		c.9034A>T								Parts of antibodies, mostly variable regions.												0						AAAAAATCCCTTCCTCAGCCC	0.552000													12	55					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	15	20658892	20658892	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:20658892G>A	uc001ytg.2	-	14	1994	c.1285C>T	c.(1285-1287)CCT>TCT	p.P429S	uc010tyx.1_Intron|uc001yth.3_Missense_Mutation_p.P429S|uc010tyy.1_Missense_Mutation_p.P429S|uc010tyz.1_Missense_Mutation_p.P277S					RecName: Full=Putative HERC2-like protein 3;																		ATTCCCTCAGGAATAAGTCTT	0.363000													17	51					0	0	0.00229938	0	0
Unknown	0	broad.mit.edu	37	15	22473063	22473063	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:22473063C>T	uc001yuj.1	-	2		c.208G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		TGATAGATTTCCCCAATCCAC	0.567000													14	156					0	0	0.00244969	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22855144	22855144	+	Silent	SNP	C	T	T	rs61738868	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:22855144C>T	uc001yur.3	+	13	1735	c.1605C>T	c.(1603-1605)TCC>TCT	p.S535S	TUBGCP5_uc001yuq.2_Silent_p.S535S|TUBGCP5_uc010axz.1_Silent_p.S122S	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	535					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		GTGCGAGTTCCGGCAGTGACC	0.478000													12	48					0	0	0.00136819	0	0
C15orf2	23742	broad.mit.edu	37	15	24922007	24922007	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:24922007G>A	uc001ywo.2	+	1	1467	c.993G>A	c.(991-993)TCG>TCA	p.S331S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	331	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GGAAAATGTCGATTCCATTGC	0.587000													13	45					0	0	0.00136819	0	0
C15orf2	23742	broad.mit.edu	37	15	24922217	24922217	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:24922217C>T	uc001ywo.2	+	1	1677	c.1203C>T	c.(1201-1203)TTC>TTT	p.F401F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	401	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCCCTTCTTTCTCCCAACCTG	0.532000													14	38					0	0	0.000308642	0	0
C15orf2	23742	broad.mit.edu	37	15	24922815	24922815	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:24922815C>T	uc001ywo.2	+	1	2275	c.1801C>T	c.(1801-1803)CCA>TCA	p.P601S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	601					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GAGCTCTCTCCCAAATTCCCA	0.468000													15	73					0	0	0.00244969	0	0
PGBD4	161779	broad.mit.edu	37	15	34395929	34395929	+	Silent	SNP	C	T	T	rs150359363	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:34395929C>T	uc001zho.2	+	1	1656	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	C15orf24_uc001zhm.2_5'Flank|C15orf24_uc001zhn.2_5'Flank	NM_152595	NP_689808	Q96DM1	PGBD4_HUMAN	piggyBac transposable element derived 4	399											0		all_lung(180;1.76e-08)		all cancers(64;1.22e-17)|GBM - Glioblastoma multiforme(113;1.78e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0242)		TGTCAACATTCCACAATGATA	0.413000													9	60					0	0	0.000274275	0	0
GJD2	57369	broad.mit.edu	37	15	35045113	35045113	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:35045113G>A	uc001zis.1	-	2	532	c.532C>T	c.(532-534)CCA>TCA	p.P178S	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	178	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		AGACCTGATGGGTGTGGAGTC	0.483000													27	130					0	0	0.000878237	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42363464	42363464	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:42363464C>T	uc001zox.2	-	17	1828	c.1733G>A	c.(1732-1734)TGG>TAG	p.W578*		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	578	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		TGGCTGCAGCCACGAGGCCTC	0.637000													8	34					0	0	0.000442599	0	0
TLN2	83660	broad.mit.edu	37	15	63089460	63089460	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:63089460G>A	uc002alb.3	+	45	6093	c.6093G>A	c.(6091-6093)ACG>ACA	p.T2031T	TLN2_uc002alc.3_Silent_p.T424T	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2031					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TAGAAGACACGAAACTACTTG	0.592000													7	78					0	0	0.000157383	0	0
MEGF11	84465	broad.mit.edu	37	15	66223205	66223205	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:66223205C>T	uc002apm.2	-	11	1505	c.1364G>A	c.(1363-1365)GGT>GAT	p.G455D	MEGF11_uc002apl.2_Missense_Mutation_p.G380D|MEGF11_uc002apn.1_Missense_Mutation_p.G455D	NM_032445	NP_115821	A6BM72	MEG11_HUMAN	multiple EGF-like-domains 11 precursor	455	EGF-like 8.					basolateral plasma membrane|integral to membrane				pancreas(1)	1						GCAGGTGCCACCATTGTTACA	0.562000													11	65					0	0	0.00136819	0	0
SNAPC5	10302	broad.mit.edu	37	15	66786865	66786865	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:66786865G>A	uc002apu.1	-	3	283	c.206C>T	c.(205-207)GCA>GTA	p.A69V	SNAPC5_uc002apt.1_5'Flank	NM_006049	NP_006040	O75971	SNPC5_HUMAN	small nuclear RNA activating complex,	69					transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase III promoter	nucleoplasm	sequence-specific DNA binding transcription factor activity				0						GTTGATTGATGCTTCATTGTC	0.373000													17	111					0	0	0.00152264	0	0
ARID3B	10620	broad.mit.edu	37	15	74887989	74887989	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:74887989C>T	uc002aye.2	+	9	1761	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	ARID3B_uc002ayd.2_Silent_p.I519I|CLK3_uc002ayf.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	520					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						TCCACCTCATCACGGGGTCTG	0.542000													7	41					0	0	0.00198382	0	0
AGPHD1	123688	broad.mit.edu	37	15	78825602	78825602	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:78825602A>C	uc010unc.1	+	5	825	c.712A>C	c.(712-714)AAG>CAG	p.K238Q	AGPHD1_uc010ble.2_Intron	NM_001013619	NP_001013641	A2RU49	AGPD1_HUMAN	aminoglycoside phosphotransferase domain	238						cytoplasm	kinase activity				0						AGAGTCCAGCAAGTCAGCCTC	0.353000													9	45					0	0	0.000673444	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79059752	79059752	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:79059752G>A	uc002bej.3	-	18	3039	c.2828C>T	c.(2827-2829)CCG>CTG	p.P943L	ADAMTS7_uc010und.1_Intron	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	943	TSP type-1 4.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CCAGGTGGCCGGACAGGGTAC	0.657000													5	26					0	0	0.000602214	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383000													3	15					0	0	6.4e-05	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393000													4	17					0	0	0.00024832	0	0
ANPEP	290	broad.mit.edu	37	15	90344822	90344822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:90344822G>A	uc002bop.3	-	11	1878	c.1586C>T	c.(1585-1587)TCC>TTC	p.S529F		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	529	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GAGTTGGATGGACCGGTTGTT	0.637000													6	38					0	0	0.00198382	0	0
PRC1	9055	broad.mit.edu	37	15	91517926	91517927	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr15:91517926_91517927CC>AA	uc002bqm.2	-	10	1395_1396	c.1238_1239GG>TT	c.(1237-1239)TGG>TTT	p.W413F	PRC1_uc002bqn.2_Missense_Mutation_p.W413F|PRC1_uc002bqo.2_Missense_Mutation_p.W413F|PRC1_uc010uqs.1_Missense_Mutation_p.W372F	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	413	Potential.|Spectrin-fold.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GTTCCTGTTCCCACAATTCAAT	0.416000													12	798					0	0	6.4e-05	0	0
MSLN	10232	broad.mit.edu	37	16	815237	815237	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:815237G>A	uc002cjw.1	+	8	689	c.638G>A	c.(637-639)GGA>GAA	p.G213E	MSLN_uc002cjt.1_Missense_Mutation_p.G213E|MSLN_uc002cju.1_Missense_Mutation_p.G213E|MSLN_uc010brd.1_Missense_Mutation_p.G212E|MSLN_uc002cjv.1_Missense_Mutation_p.G213E|MSLN_uc002cjx.1_Missense_Mutation_p.G213E|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	213					cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				AGCTGCCCGGGACCCCTGGAC	0.697000													5	13					0	0	0.00116845	0	0
TPSD1	23430	broad.mit.edu	37	16	1306606	1306606	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:1306606C>T	uc002clb.1	+	2	181	c.172C>T	c.(172-174)CGC>TGC	p.R58C	TPSD1_uc010brm.1_5'UTR	NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	58	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CCTGAGAGTCCGCGGCCCATA	0.692000													15	77					0	0	0.000422831	0	0
BAIAP3	8938	broad.mit.edu	37	16	1392257	1392257	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:1392257C>T	uc002clk.1	+	11	1035	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	BAIAP3_uc002clj.2_Silent_p.F327F|BAIAP3_uc010uuz.1_Silent_p.F310F|BAIAP3_uc010uva.1_Silent_p.F282F|BAIAP3_uc010uvb.1_Silent_p.F362F|BAIAP3_uc010uvc.1_Silent_p.F310F	NM_003933	NP_003924	O94812	BAIP3_HUMAN	BAI1-associated protein 3	345					G-protein coupled receptor protein signaling pathway|neurotransmitter secretion		protein C-terminus binding			pancreas(1)	1		Hepatocellular(780;0.0893)				CCGATGACTTCCTGGGGTGCC	0.617000													14	42					0	0	0.00244969	0	0
SRRM2	23524	broad.mit.edu	37	16	2815608	2815608	+	Silent	SNP	A	C	C	rs142684862	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:2815608A>C	uc002crk.2	+	11	5628	c.5079A>C	c.(5077-5079)TCA>TCC	p.S1693S	SRRM2_uc002crj.1_Silent_p.S1597S|SRRM2_uc002crl.1_Silent_p.S1693S|SRRM2_uc010bsu.1_Silent_p.S1597S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1693	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCTCTCGATCATCTCCGGAGC	0.572000													7	28					0	0	0.00198382	0	0
BTBD12	84464	broad.mit.edu	37	16	3633495	3633495	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:3633495G>A	uc002cvp.2	-	14	5383	c.4756C>T	c.(4756-4758)CTG>TTG	p.L1586L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1586	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CGTTTAGGCAGAGGGCGGACT	0.557000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				17	80					0	0	0.00074312	0	0
USP7	7874	broad.mit.edu	37	16	9000299	9000299	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:9000299G>A	uc002czl.2	-	13	1611	c.1412C>T	c.(1411-1413)CCC>CTC	p.P471L	USP7_uc010uyk.1_Missense_Mutation_p.P372L|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.P372L|USP7_uc002czk.2_Missense_Mutation_p.P455L|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	471					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						ATCCCCTTTGGGGTTTAGATA	0.448000													20	88					0	0	0.00278032	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857657	9857657	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:9857657G>A	uc002czo.3	-	13	4292	c.3744C>T	c.(3742-3744)ATC>ATT	p.I1248I	GRIN2A_uc010uym.1_Silent_p.I1248I|GRIN2A_uc010uyn.1_Silent_p.I1091I|GRIN2A_uc002czr.3_Silent_p.I1248I	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1248	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGTCTTCATCGATGTCATAGA	0.547000													6	63					0	0	0.00116845	0	0
ERCC4	2072	broad.mit.edu	37	16	14029275	14029275	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:14029275C>T	uc002dce.2	+	8	1495	c.1486C>T	c.(1486-1488)CAA>TAA	p.Q496*	ERCC4_uc010uyz.1_Nonsense_Mutation_p.Q46*	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	496					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						GACCTTAACTCAAATGGTAGG	0.428000			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				4	17					0	0	0.00024832	0	0
ABCC6	368	broad.mit.edu	37	16	16278870	16278870	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:16278870G>C	uc002den.3	-	15	1926	c.1889C>G	c.(1888-1890)ACC>AGC	p.T630S	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Missense_Mutation_p.T642S	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	630	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		ACTGTGTATGGTGATGCAATC	0.602000													9	68					0	0	0.000673444	0	0
LOC81691	81691	broad.mit.edu	37	16	20855312	20855312	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:20855312C>T	uc002dhv.2	+	16	1946	c.1683C>T	c.(1681-1683)TCC>TCT	p.S561S	ERI2_uc002dht.3_Intron|LOC81691_uc002dhx.2_Intron|LOC81691_uc002dhw.2_Silent_p.S304S|LOC81691_uc002dhy.3_Silent_p.S561S	NM_030941	NP_112203	Q96IC2	REXON_HUMAN	exonuclease NEF-sp isoform 1	561	RRM 1.					nucleolus	exonuclease activity|nucleotide binding|RNA binding			ovary(1)|kidney(1)	2						CCATAGAATCCTTGGATGGTA	0.473000													5	76					0	0	0.000602214	0	0
DNAH3	55567	broad.mit.edu	37	16	21031009	21031009	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:21031009C>T	uc010vbe.1	-	41	5959	c.5959G>A	c.(5959-5961)GAT>AAT	p.D1987N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1987					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGTTATCATCCATGCCCATG	0.423000													7	46					0	0	0.000157383	0	0
DNAH3	55567	broad.mit.edu	37	16	21042418	21042418	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:21042418C>T	uc010vbe.1	-	37	5388	c.5388G>A	c.(5386-5388)GTG>GTA	p.V1796V		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1796	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AAATAGCATCCACTGGCCCAT	0.428000													9	63					0	0	0.000274275	0	0
PRKCB	5579	broad.mit.edu	37	16	24166021	24166021	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:24166021G>A	uc002dmd.2	+	10	1279	c.1082G>A	c.(1081-1083)CGA>CAA	p.R361Q	PRKCB_uc002dme.2_Missense_Mutation_p.R361Q	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	361	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CTTTCAGAACGAAAAGGCACA	0.507000													5	54					0	0	0.000157383	0	0
CACNG3	10368	broad.mit.edu	37	16	24373082	24373082	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:24373082C>T	uc002dmf.2	+	4	2046	c.846C>T	c.(844-846)TCC>TCT	p.S282S		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	282					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TCCTCAACTCCGACCGGGACC	0.552000													17	83					0	0	0.00152264	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25255315	25255315	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:25255315G>A	uc002dod.3	-	6	2179	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.S387F	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	591					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GGTGCTGGGGGAAGGAGCAGA	0.547000													7	65					0	0	0.00198382	0	0
KIAA0556	23247	broad.mit.edu	37	16	27786390	27786390	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:27786390C>T	uc002dow.2	+	24	4458	c.4434C>T	c.(4432-4434)CCC>CCT	p.P1478P		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1478										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GGCTGGCTCCCATCCTGCCGG	0.662000													6	59					0	0	0.000157383	0	0
SH2B1	25970	broad.mit.edu	37	16	28883220	28883220	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:28883220C>T	uc002dri.2	+	8	1868	c.1429C>T	c.(1429-1431)CCC>TCC	p.P477S	uc010vct.1_Intron|SH2B1_uc010vdc.1_Missense_Mutation_p.P167S|SH2B1_uc002drj.2_Missense_Mutation_p.P477S|SH2B1_uc002drk.2_Missense_Mutation_p.P477S|SH2B1_uc002drl.2_Missense_Mutation_p.P477S|SH2B1_uc010vdd.1_Missense_Mutation_p.P141S|SH2B1_uc010vde.1_Missense_Mutation_p.P477S|SH2B1_uc002drm.2_Missense_Mutation_p.P477S	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	477	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						CCCCCGCATCCCCATTGAAGA	0.627000													10	44					0	0	0.000673444	0	0
SPNS1	83985	broad.mit.edu	37	16	28990507	28990507	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:28990507T>A	uc010vdi.1	+	5	616	c.476T>A	c.(475-477)CTG>CAG	p.L159Q	uc010vct.1_Intron|SPNS1_uc002dry.2_Missense_Mutation_p.L159Q|SPNS1_uc002drx.2_Missense_Mutation_p.L86Q|SPNS1_uc002dsa.2_Missense_Mutation_p.L159Q|SPNS1_uc002drz.2_Missense_Mutation_p.L159Q|SPNS1_uc010byp.2_Missense_Mutation_p.L137Q|SPNS1_uc010byq.1_Missense_Mutation_p.L86Q	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	159					lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						ACCCGGGGCCTGGTGGGGGTC	0.662000													11	69					0	0	0.00185496	0	0
ASPHD1	253982	broad.mit.edu	37	16	29912570	29912571	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:29912570_29912571GG>AA	uc002dut.2	+	1	424_425	c.278_279GG>AA	c.(277-279)TGG>TAA	p.W93*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	93	Helical; (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						CTGTTCCTCTGGTACTGCTACC	0.683000													14	72					0	0	6.4e-05	0	0
SRCAP	10847	broad.mit.edu	37	16	30724011	30724011	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:30724011C>T	uc002dze.1	+	14	2390	c.2005C>T	c.(2005-2007)CCC>TCC	p.P669S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P526S|SRCAP_uc010bzz.1_Missense_Mutation_p.P239S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	669	Helicase ATP-binding.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TAACTGGGGTCCCCATTTAAT	0.458000													14	80					0	0	0.000422831	0	0
SETD1A	9739	broad.mit.edu	37	16	30976345	30976345	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:30976345C>T	uc002ead.1	+	7	1968	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	428	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CTACCGGCCTCCTGCCTCAGA	0.662000													7	48					0	0	0.000274275	0	0
SETD1A	9739	broad.mit.edu	37	16	30991855	30991855	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:30991855C>T	uc002ead.1	+	15	5144	c.4458C>T	c.(4456-4458)CCC>CCT	p.P1486P		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	1486	Interaction with ASH2L, RBBP5 and WDR5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						AGGATGGGCCCCGGGAGCACC	0.642000													11	79					0	0	0.00136819	0	0
ZNF423	23090	broad.mit.edu	37	16	49671261	49671261	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:49671261G>A	uc002efs.2	-	5	2100	c.1802C>T	c.(1801-1803)GCC>GTC	p.A601V	ZNF423_uc010vgn.1_Missense_Mutation_p.A484V	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	601					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GCTCTGCTCGGCCTTGGACTT	0.572000													7	57					0	0	0.000157383	0	0
HEATR3	55027	broad.mit.edu	37	16	50102755	50102755	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:50102755C>T	uc002efw.2	+	3	538	c.376C>T	c.(376-378)CCT>TCT	p.P126S	HEATR3_uc002efx.2_Missense_Mutation_p.P40S	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	126							binding			ovary(1)|skin(1)	2						TATCATGACCCCTCTGGTTGC	0.378000													12	181					0	0	0.000308642	0	0
SALL1	6299	broad.mit.edu	37	16	51175391	51175391	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:51175391C>T	uc010vgs.1	-	2	773	c.742G>A	c.(742-744)GAA>AAA	p.E248K	SALL1_uc010vgr.1_Missense_Mutation_p.E151K|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	248					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CGAATCTGTTCGATCAATTGC	0.542000													20	125					0	0	0.00278032	0	0
COQ9	57017	broad.mit.edu	37	16	57493987	57493987	+	Missense_Mutation	SNP	G	A	A	rs140788797		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:57493987G>A	uc002elq.2	+	8	908	c.892G>A	c.(892-894)GTG>ATG	p.V298M	COQ9_uc002elr.2_Missense_Mutation_p.V263M|COQ9_uc002els.2_Missense_Mutation_p.V91M|POLR2C_uc010vhq.1_5'Flank|POLR2C_uc002elt.1_5'Flank	NM_020312	NP_064708	O75208	COQ9_HUMAN	coenzyme Q9 homolog precursor	298					ubiquinone biosynthetic process	mitochondrion				breast(1)	1						AGAGGCACTGGTGCAAGGACT	0.532000													5	42					0	0	0.00198382	0	0
CNGB1	1258	broad.mit.edu	37	16	57918086	57918086	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:57918086C>T	uc002emt.2	-	33	3803	c.3738G>A	c.(3736-3738)AGG>AGA	p.R1246R	CNGB1_uc010cdh.2_Silent_p.R1240R	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	1246	Cytoplasmic (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CCTTCTCCTCCCTTTCCTCCG	0.711000													13	87					0	0	0.000422831	0	0
PRSS54	221191	broad.mit.edu	37	16	58320099	58320099	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:58320099C>T	uc002enf.2	-	5	659	c.264G>A	c.(262-264)AGG>AGA	p.R88R	PRSS54_uc002eng.2_Silent_p.R88R|PRSS54_uc010vie.1_5'UTR	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	88	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CAATGTCCTTCCTGGAGAGAG	0.333000													8	69					0	0	0.000442599	0	0
NOL3	8996	broad.mit.edu	37	16	67208641	67208641	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:67208641G>A	uc010vjd.1	+	3	596	c.589G>A	c.(589-591)GCC>ACC	p.A197T	NOL3_uc010vjc.1_Missense_Mutation_p.G200D|NOL3_uc002erp.2_Missense_Mutation_p.G138D			O60936	NOL3_HUMAN	RecName: Full=Nucleolar protein 3; AltName: Full=Apoptosis repressor with CARD; AltName: Full=Muscle-enriched cytoplasmic protein;          Short=Myp; AltName: Full=Nucleolar protein of 30 kDa;          Short=Nop30;	135					anti-apoptosis|apoptosis|mRNA processing|RNA splicing	cytosol|nucleolus	identical protein binding|RNA binding				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.0335)|all cancers(182;0.184)		GAGGCCGGGGGCCCTGAGGGC	0.627000													5	22					0	0	0.000602214	0	0
EDC4	23644	broad.mit.edu	37	16	67916928	67916928	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:67916928G>A	uc002eur.2	+	27	3863	c.3697G>A	c.(3697-3699)GAG>AAG	p.E1233K	EDC4_uc010cer.2_Missense_Mutation_p.E852K|EDC4_uc002eus.2_Missense_Mutation_p.E963K|EDC4_uc002eut.1_3'UTR|NRN1L_uc002euu.2_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	1233					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GGCGCTCAAGGAGCAGCAGGC	0.607000											OREG0023890	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	37					0	0	0.00116845	0	0
HAS3	3038	broad.mit.edu	37	16	69143412	69143412	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:69143412G>A	uc010cfh.2	+	2	338	c.114G>A	c.(112-114)ACG>ACA	p.T38T	HAS3_uc002ewk.2_Silent_p.T38T|HAS3_uc010vlk.1_Silent_p.T38T|HAS3_uc002ewl.2_Silent_p.T38T	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	38	Extracellular (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		TCATCCACACGGAAAAGCACT	0.622000													7	44					0	0	0.00198382	0	0
HYDIN	54768	broad.mit.edu	37	16	70889126	70889126	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:70889126G>A	uc002ezr.2	-	73	12473	c.12345C>T	c.(12343-12345)TTC>TTT	p.F4115F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4116										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGAAAAATCGAACCCCTGCT	0.542000													12	76					0	0	0.000308642	0	0
GLG1	2734	broad.mit.edu	37	16	74505106	74505106	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:74505106C>T	uc002fcy.3	-	15	2244	c.2194G>A	c.(2194-2196)GAG>AAG	p.E732K	GLG1_uc002fcx.2_Missense_Mutation_p.E732K|GLG1_uc002fcw.3_Missense_Mutation_p.E721K|GLG1_uc002fcz.3_Missense_Mutation_p.E149K	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	732	Cys-rich GLG1 11.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						GCACACTTCTCGTTCATGTCC	0.498000													25	229					0	0	0.00047179	0	0
SDR42E1	93517	broad.mit.edu	37	16	82032901	82032901	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:82032901C>T	uc002fgu.2	-	3	1125	c.997G>A	c.(997-999)GAG>AAG	p.E333K		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	333					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						TAACCTAGCTCTTTCTTGGCT	0.463000													12	110					0	0	0.00136819	0	0
MBTPS1	8720	broad.mit.edu	37	16	84129350	84129350	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr16:84129350G>A	uc002fhi.2	-	4	984	c.482C>T	c.(481-483)CCC>CTC	p.P161L		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	161					cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						TCTTCGCAGGGGACGTGATGA	0.592000													8	110					0	0	0.000673444	0	0
GEMIN4	50628	broad.mit.edu	37	17	648241	648241	+	Silent	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:648241A>G	uc002frs.1	-	2	3161	c.3042T>C	c.(3040-3042)ACT>ACC	p.T1014T		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	1014					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TCTTGCTCAAAGTCTCATAGC	0.557000													3	38					0	0	6.4e-05	0	0
TIMM22	29928	broad.mit.edu	37	17	900467	900467	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:900467C>T	uc002fsc.2	+	1	111	c.85C>T	c.(85-87)CTG>TTG	p.L29L		NM_013337	NP_037469	Q9Y584	TIM22_HUMAN	translocase of inner mitochondrial membrane 22	29					transmembrane transport	integral to membrane|mitochondrial inner membrane	protein transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		CAGCCTGCTCCTGCAGTACCT	0.672000													11	36					0	0	0.00185496	0	0
SCARF1	8578	broad.mit.edu	37	17	1538791	1538791	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:1538791G>A	uc002fsz.1	-	11	1804	c.1754C>T	c.(1753-1755)GCC>GTC	p.A585V	SCARF1_uc002fsy.1_3'UTR|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_Missense_Mutation_p.A499V	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	585	Pro/Ser-rich.|Cytoplasmic (Potential).				cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TGGCCGCTTGGCCCGAGCTAG	0.672000													19	98					0	0	0.00229938	0	0
PAFAH1B1	5048	broad.mit.edu	37	17	2570400	2570400	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:2570400G>C	uc002fuw.3	+	5	875	c.307G>C	c.(307-309)GCA>CCA	p.A103P	PAFAH1B1_uc010ckb.1_RNA	NM_000430	NP_000421	P43034	LIS1_HUMAN	platelet-activating factor acetylhydrolase,	103	Interaction with dynein and dynactin.				acrosome assembly|actin cytoskeleton organization|adult locomotory behavior|brain morphogenesis|corpus callosum morphogenesis|establishment of mitotic spindle orientation|G2/M transition of mitotic cell cycle|hippocampus development|layer formation in cerebral cortex|learning or memory|lipid catabolic process|microtubule organizing center organization|mitotic prometaphase|neuroblast proliferation|neuromuscular process controlling balance|neuron migration|platelet activating factor metabolic process|regulation of Rho GTPase activity|retrograde axon cargo transport|synaptic transmission|vesicle transport along microtubule	astral microtubule|cell cortex|centrosome|cytosol|kinetochore|motile primary cilium|nuclear membrane|perinuclear region of cytoplasm	dynactin binding|heparin binding|microtubule binding|phospholipase binding|phosphoprotein binding|protein homodimerization activity			skin(1)	1						AGAAAAATATGCATTGAGTGG	0.428000													7	47					0	0	0.00198382	0	0
OR1A2	26189	broad.mit.edu	37	17	3101608	3101608	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:3101608A>T	uc002fvd.1	+	1	796	c.796A>T	c.(796-798)AGC>TGC	p.S266C		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GACCAGTTACAGCCCCAAAGA	0.448000													11	126					0	0	0.000978159	0	0
ENO3	2027	broad.mit.edu	37	17	4860302	4860303	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:4860302_4860303TC>GT	uc002gab.3	+	12	1359_1360	c.1265_1266TC>GT	c.(1264-1266)ATC>AGT	p.I422S	ENO3_uc002gac.3_Missense_Mutation_p.I422S|ENO3_uc010vss.1_Missense_Mutation_p.I379S|ENO3_uc010vst.1_Missense_Mutation_p.I249S	NM_053013	NP_443739	P13929	ENOB_HUMAN	enolase 3	422					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex	magnesium ion binding|phosphopyruvate hydratase activity			ovary(1)	1						GACAAGGCAATCTTTGCTGGAC	0.574000											OREG0024110	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	138					0	0	6.4e-05	0	0
CAMTA2	23125	broad.mit.edu	37	17	4876977	4876977	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:4876977G>C	uc002gah.1	-	13	2212	c.2104C>G	c.(2104-2106)CGT>GGT	p.R702G	CAMTA2_uc010cku.1_Missense_Mutation_p.R725G|CAMTA2_uc002gag.1_Missense_Mutation_p.R701G|CAMTA2_uc002gai.1_Missense_Mutation_p.R704G|CAMTA2_uc010ckv.1_Missense_Mutation_p.R349G	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	702					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						TGGGCCAGACGTTCAGGACCC	0.627000													8	48					0	0	0.000442599	0	0
C17orf74	201243	broad.mit.edu	37	17	7329683	7329683	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:7329683C>T	uc002ggw.2	+	3	446	c.373C>T	c.(373-375)CGT>TGT	p.R125C	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	125	Arg-rich.					integral to membrane					0		Prostate(122;0.157)				TCGCTGTGTTcgtcgccgccg	0.423000													21	108					0	0	0.00152264	0	0
C17orf74	201243	broad.mit.edu	37	17	7330090	7330090	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:7330090C>T	uc002ggw.2	+	3	853	c.780C>T	c.(778-780)CGC>CGT	p.R260R	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	260						integral to membrane					0		Prostate(122;0.157)				CCTATGGGCGCCACGGTTCCC	0.652000													7	31					0	0	0.000157383	0	0
SAT2	112483	broad.mit.edu	37	17	7530541	7530541	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:7530541A>G	uc002gic.2	-	3	363	c.122T>C	c.(121-123)CTG>CCG	p.L41P	SHBG_uc010cmo.2_Intron|SHBG_uc010cmp.2_Intron|SHBG_uc010cmq.2_Intron|SHBG_uc010cmr.2_Intron|SHBG_uc010cms.2_Intron|SHBG_uc010cmt.2_Intron|SHBG_uc010cmu.2_Intron|SAT2_uc002gib.1_RNA|SHBG_uc010cmz.2_5'Flank|SHBG_uc010cmv.2_5'Flank|SHBG_uc010cmw.2_5'Flank|SHBG_uc010cmx.2_5'Flank|SHBG_uc010cmy.2_5'Flank|SHBG_uc002gid.3_5'Flank|SHBG_uc002gie.2_5'Flank|SHBG_uc010cnd.2_5'Flank|SHBG_uc010cna.2_5'Flank|SHBG_uc010vue.1_5'Flank|SHBG_uc010vuf.1_5'Flank|SHBG_uc010cnb.2_5'Flank|SHBG_uc010cnc.2_5'Flank	NM_133491	NP_597998	Q96F10	SAT2_HUMAN	diamine N-acetyltransferase 2	41	N-acetyltransferase.					cytoplasm	diamine N-acetyltransferase activity	p.?(1)			0				READ - Rectum adenocarcinoma(115;0.166)	Spermine(DB00127)	ATCTGCTCTCAGGGCTGCCGA	0.542000													3	70					0	0	6.4e-05	0	0
DNAH2	146754	broad.mit.edu	37	17	7696092	7696092	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:7696092G>A	uc002giu.1	+	46	7277	c.7263G>A	c.(7261-7263)GGG>GGA	p.G2421G		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2421	AAA 3 (By similarity).|ATP (Potential).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TGGGGACTGGGAAGACCTCCA	0.617000													6	34					0	0	0.00198382	0	0
ALOX15B	247	broad.mit.edu	37	17	7950312	7950312	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:7950312G>A	uc002gju.2	+	10	1491	c.1375G>A	c.(1375-1377)GAT>AAT	p.D459N	ALOX15B_uc002gjv.2_Missense_Mutation_p.D430N|ALOX15B_uc002gjw.2_Missense_Mutation_p.D430N|ALOX15B_uc010vun.1_Missense_Mutation_p.D459N|ALOX15B_uc010cnp.2_Missense_Mutation_p.D265N	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	459	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						TCTGCCTGAGGATATCCGGAC	0.547000													10	63					0	0	0.000673444	0	0
ODF4	146852	broad.mit.edu	37	17	8243413	8243413	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:8243413G>A	uc002gle.1	+	1	226	c.44G>A	c.(43-45)GGA>GAA	p.G15E		NM_153007	NP_694552	Q2M2E3	ODFP4_HUMAN	outer dense fiber of sperm tails 4	15					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)	1						AGGTCAGAAGGAGAAAGAGAC	0.542000													6	57					0	0	0.000274275	0	0
MYH8	4626	broad.mit.edu	37	17	10299733	10299733	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:10299733C>T	uc002gmm.2	-	33	4662	c.4567G>A	c.(4567-4569)GGA>AGA	p.G1523R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1523	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATTTGCTTTCCTCCCTCTGCA	0.423000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				5	43					0	0	0.000602214	0	0
MAP2K4	6416	broad.mit.edu	37	17	12016634	12016634	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:12016634C>T	uc002gnj.2	+	7	839	c.770C>T	c.(769-771)TCT>TTT	p.S257F	MAP2K4_uc002gnk.2_Missense_Mutation_p.S268F|MAP2K4_uc010vvi.1_Missense_Mutation_p.S139F|MAP2K4_uc010vvj.1_Missense_Mutation_p.S129F	NM_003010	NP_003001	P45985	MP2K4_HUMAN	mitogen-activated protein kinase kinase 4	257	Protein kinase.				cellular response to mechanical stimulus|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|JUN kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.?(1)		large_intestine(14)|breast(12)|lung(8)|ovary(8)|pancreas(8)|stomach(2)|central_nervous_system(1)|biliary_tract(1)|testis(1)|endometrium(1)|urinary_tract(1)|skin(1)	58		all_cancers(5;0.0413)|Breast(5;0.000625)|all_epithelial(5;0.00978)|all_lung(20;0.0449)|Lung NSC(33;0.163)		Epithelial(2;4.12e-09)|all cancers(2;6.86e-07)|BRCA - Breast invasive adenocarcinoma(2;8.74e-07)|Colorectal(4;5.32e-05)|COAD - Colon adenocarcinoma(4;0.0039)|READ - Rectum adenocarcinoma(10;0.0681)		CTTGTGGACTCTATTGCCAAG	0.448000			D|Mis|N		pancreatic|breast|colorectal								4	27					0	0	0.00024832	0	0
CCDC144A	9720	broad.mit.edu	37	17	16612200	16612200	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:16612200G>A	uc002gqk.1	+	5	905	c.829G>A	c.(829-831)GAA>AAA	p.E277K	CCDC144A_uc002gql.1_Intron|LOC162632_uc010cpj.1_5'Flank	NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	277											0						AAAATCTGAGGAAATGTGGAT	0.358000													7	67					0	0	0.00136819	0	0
LOC162632	162632	broad.mit.edu	37	17	16703526	16703526	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:16703526C>T	uc010cpj.1	+	19		c.4637C>T			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						CTGGTCACTCCTCAGGACCAT	0.547000													8	66					0	0	0.000274275	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16852210	16852210	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:16852210T>G	uc002gqs.1	-	3	300	c.287A>C	c.(286-288)CAC>CCC	p.H96P	TNFRSF13B_uc010vwt.1_RNA|TNFRSF13B_uc002gqt.1_Missense_Mutation_p.H50P|TNFRSF13B_uc010vwu.1_Missense_Mutation_p.H96P	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	96	Extracellular (Potential).|TNFR-Cys 2.				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						TTGCTTAGGGTGCTGTCCACA	0.532000									IgA_Deficiency_Selective				14	93					0	0	0.00185496	0	0
LGALS9C	654346	broad.mit.edu	37	17	18389395	18389395	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:18389395C>T	uc002gtw.2	+	3	349	c.279C>T	c.(277-279)TTC>TTT	p.F93F	LGALS9C_uc010vyb.1_Silent_p.F5F	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	93	Galectin 1.						sugar binding			ovary(1)	1						ACATGCCCTTCCAGAAGGGGA	0.582000													15	32					0	0	0.000422831	0	0
SUPT6H	6830	broad.mit.edu	37	17	27022499	27022499	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:27022499G>A	uc002hby.2	+	29	3994	c.3904G>A	c.(3904-3906)GAC>AAC	p.D1302N	SUPT6H_uc010crt.2_Missense_Mutation_p.D1302N	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	1302					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CACCTACTATGACTTTGATGC	0.542000													11	35					0	0	0.000673444	0	0
ACCN1	40	broad.mit.edu	37	17	31439043	31439043	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:31439043C>T	uc002hhu.2	-	2	872	c.598G>A	c.(598-600)GAG>AAG	p.E200K	ACCN1_uc002hht.2_Missense_Mutation_p.E251K	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	200	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TTGCCATCCTCGCCTGAGTTA	0.532000													6	38					0	0	0.00116845	0	0
SLFN11	91607	broad.mit.edu	37	17	33680911	33680911	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:33680911C>T	uc010ctp.2	-	6	1808	c.1366G>A	c.(1366-1368)GGA>AGA	p.G456R	SLFN11_uc010ctq.2_Missense_Mutation_p.G456R|SLFN11_uc002hjh.3_Missense_Mutation_p.G456R|SLFN11_uc002hjg.3_Missense_Mutation_p.G456R|SLFN11_uc010ctr.2_Missense_Mutation_p.G456R	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	456						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CAGATGACTCCTGGCTTCTCC	0.483000													10	30					0	0	0.000978159	0	0
GAS2L2	246176	broad.mit.edu	37	17	34074923	34074923	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:34074923C>T	uc002hjv.1	-	4	805	c.777G>A	c.(775-777)TGG>TGA	p.W259*		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	259	GAR.				cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCAGTGTGTCCCAGCCGCCCC	0.632000											OREG0024328	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	33					0	0	0.00116845	0	0
KRT25	147183	broad.mit.edu	37	17	38907296	38907296	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:38907296G>A	uc002hve.2	-	5	928	c.867C>T	c.(865-867)GTC>GTT	p.V289V		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	289	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TTGTGGCTCCGACATCCTCAG	0.483000													7	55					0	0	0.000274275	0	0
KRT15	3866	broad.mit.edu	37	17	39673104	39673104	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:39673104C>T	uc002hwy.2	-	3	885	c.694G>A	c.(694-696)GGC>AGC	p.G232S	KRT15_uc002hwz.2_Missense_Mutation_p.G134S|KRT15_uc002hxa.2_Missense_Mutation_p.G67S|KRT15_uc002hxb.1_Missense_Mutation_p.G67S	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	232	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TCATTCAGGCCCTCGATCTGC	0.622000													9	62					0	0	0.000978159	0	0
BRCA1	672	broad.mit.edu	37	17	41223245	41223245	+	Silent	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:41223245A>G	uc002icq.2	-	15	4918	c.4686T>C	c.(4684-4686)CCT>CCC	p.P1562P	BRCA1_uc010whp.1_Silent_p.P411P|BRCA1_uc010whl.1_Silent_p.P458P|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Silent_p.P1491P|BRCA1_uc002icu.2_Silent_p.P458P|BRCA1_uc010cyx.2_Silent_p.P1515P|BRCA1_uc002ict.2_Silent_p.P1583P|BRCA1_uc010whn.1_Silent_p.P53P|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Silent_p.P291P|BRCA1_uc002idc.1_Silent_p.P458P|BRCA1_uc010whr.1_Silent_p.P412P	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1562					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		ATTCCAGGTAAGGGGTTCCCT	0.418000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			18	103					0	0	0.000958276	0	0
NBR1	4077	broad.mit.edu	37	17	41341632	41341632	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:41341632G>A	uc010czd.2	+	8	648	c.508G>A	c.(508-510)GTT>ATT	p.V170I	NBR1_uc010diz.2_Missense_Mutation_p.V170I|NBR1_uc010whu.1_Missense_Mutation_p.V170I|NBR1_uc010whv.1_Missense_Mutation_p.V170I|NBR1_uc010whw.1_Missense_Mutation_p.V149I|NBR1_uc010whx.1_5'Flank	NM_031862	NP_114068	Q14596	NBR1_HUMAN	neighbor of BRCA1 gene 1	170					macroautophagy|protein oligomerization	autophagic vacuole|cytoplasmic vesicle|cytosol|late endosome|lysosome|sarcomere	ubiquitin binding|zinc ion binding			skin(1)	1		Breast(137;0.00086)		BRCA - Breast invasive adenocarcinoma(366;0.0934)		TAACGAAACGGTTGAGAAGCT	0.393000													17	92					0	0	0.000422831	0	0
GRN	2896	broad.mit.edu	37	17	42427699	42427699	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:42427699C>T	uc002igp.1	+	5	672	c.453C>T	c.(451-453)CCC>CCT	p.P151P	GRN_uc002igq.1_3'UTR|GRN_uc002igr.1_5'Flank	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	151					signal transduction	extracellular space	cytokine activity|growth factor activity	p.P151L(1)		ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GGTGCTGCCCCATGCCCCAGG	0.617000													22	91					0	0	0.00188189	0	0
Unknown	0	broad.mit.edu	37	17	43625475	43625475	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:43625475C>T	uc002ijh.2	-	1	650	c.529G>A	c.(529-531)GAG>AAG	p.E177K	uc010wjv.1_Intron					Homo sapiens cDNA FLJ45049 fis, clone BRAWH3022347.																		GTTGAGGTCTCCTCTGTGGTT	0.507000													34	217					0	0	0.00111076	0	0
MAPT	4137	broad.mit.edu	37	17	44060828	44060828	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:44060828G>A	uc002ijr.3	+	6	978	c.658G>A	c.(658-660)GAA>AAA	p.E220K	MAPT_uc010dau.2_Missense_Mutation_p.E220K|MAPT_uc002ijs.3_Intron|MAPT_uc002ijx.3_Intron|MAPT_uc002ijt.3_Intron|MAPT_uc002iju.3_Intron|MAPT_uc002ijv.3_Intron	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	220					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GGAGGTGGATGAAGACCGCGA	0.677000													4	11					0	0	0.00024832	0	0
NPEPPS	9520	broad.mit.edu	37	17	45668159	45668159	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:45668159C>T	uc002ilr.3	+	10	1395	c.1172C>T	c.(1171-1173)CCA>CTA	p.P391L	NPEPPS_uc010wkt.1_Missense_Mutation_p.P387L|NPEPPS_uc010wku.1_Missense_Mutation_p.P355L|NPEPPS_uc010wkv.1_5'UTR	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	391					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						CACTGCTTCCCAGAGTATGAT	0.413000													9	128					0	0	0.000442599	0	0
OR4D2	124538	broad.mit.edu	37	17	56247769	56247769	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:56247769C>T	uc010wnp.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCATGATCTTCGTTCCAAGCA	0.537000													11	121					0	0	0.00136819	0	0
ABCA10	10349	broad.mit.edu	37	17	67187420	67187420	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:67187420G>A	uc010dfa.1	-	18	2787	c.1908C>T	c.(1906-1908)ATC>ATT	p.I636I	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Silent_p.I237I	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	636					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TAAGGGATGTGATTTTTTCTG	0.338000													6	21					0	0	0.000157383	0	0
NUP85	79902	broad.mit.edu	37	17	73227516	73227516	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:73227516C>T	uc002jng.1	+	12	1436	c.1176C>T	c.(1174-1176)CTC>CTT	p.L392L	NUP85_uc010dgd.1_Silent_p.L347L|NUP85_uc010wrv.1_Silent_p.L346L|NUP85_uc002jnh.1_5'UTR	NM_024844	NP_079120	Q9BW27	NUP85_HUMAN	nucleoporin 85	392					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|nuclear membrane|Nup107-160 complex|spindle	protein binding			ovary(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		all cancers(21;3.45e-06)			CACACAACCTCTAGTAAGTGG	0.592000													12	83					0	0	0.000978159	0	0
ITGB4	3691	broad.mit.edu	37	17	73727378	73727378	+	Missense_Mutation	SNP	C	T	T	rs141337579	by1000genomes	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:73727378C>T	uc002jpg.2	+	10	1331	c.1144C>T	c.(1144-1146)CGG>TGG	p.R382W	ITGB4_uc002jph.2_Missense_Mutation_p.R382W|ITGB4_uc010dgo.2_Missense_Mutation_p.R382W|ITGB4_uc002jpi.3_Missense_Mutation_p.R382W|ITGB4_uc010dgp.1_Missense_Mutation_p.R382W|ITGB4_uc002jpj.2_Missense_Mutation_p.R382W|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	382	Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCGAGGCCTTCGGACAGAGGT	0.637000													9	73					0	0	0.000274275	0	0
EVPL	2125	broad.mit.edu	37	17	74005574	74005574	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:74005574G>A	uc002jqi.2	-	22	3940	c.3712C>T	c.(3712-3714)CTG>TTG	p.L1238L	EVPL_uc010wss.1_Silent_p.L1260L|EVPL_uc010wst.1_Silent_p.L708L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1238	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGGACCTCCAGGTCGGGCAGC	0.642000													11	83					0	0	0.000673444	0	0
EVPL	2125	broad.mit.edu	37	17	74005599	74005599	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:74005599C>T	uc002jqi.2	-	22	3915	c.3687G>A	c.(3685-3687)AAG>AAA	p.K1229K	EVPL_uc010wss.1_Silent_p.K1251K|EVPL_uc010wst.1_Silent_p.K699K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1229	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCTCCACCTCCTTCTCCACAC	0.627000													7	83					0	0	0.00198382	0	0
SEC14L1	6397	broad.mit.edu	37	17	75190973	75190973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:75190973C>T	uc002jto.2	+	7	956	c.689C>T	c.(688-690)CCC>CTC	p.P230L	SEC14L1_uc010dhc.2_Missense_Mutation_p.P230L|SEC14L1_uc010wth.1_Missense_Mutation_p.P230L|SEC14L1_uc002jtm.2_Missense_Mutation_p.P230L|SEC14L1_uc010wti.1_Missense_Mutation_p.P196L	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	230					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						GCACCTGAGCCCGTGGTGGGC	0.632000													20	63					0	0	0.000958276	0	0
DNAH17	8632	broad.mit.edu	37	17	76457746	76457746	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:76457746G>A	uc010dhp.1	-	3	441	c.219C>T	c.(217-219)CTC>CTT	p.L73L	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCTTCTGCTTGAGCTCAGCCT	0.562000													4	27					0	0	0.00116845	0	0
SLC38A10	124565	broad.mit.edu	37	17	79226002	79226002	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:79226002G>A	uc002jzz.1	-	13	2313	c.1938C>T	c.(1936-1938)AGC>AGT	p.S646S	SLC38A10_uc002jzy.1_Silent_p.S564S|SLC38A10_uc002kab.2_Silent_p.S646S	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	646					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CACCGTGGTCGCTGTCCTCTG	0.697000													28	109					0	0	0.00106085	0	0
NPLOC4	55666	broad.mit.edu	37	17	79573813	79573813	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:79573813G>A	uc002kat.3	-	7	740	c.558C>T	c.(556-558)ATC>ATT	p.I186I	NPLOC4_uc002kau.3_Silent_p.I186I|NPLOC4_uc010wur.1_Silent_p.I25I	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	186					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			TCTTGCAGCTGATGTTCTCCA	0.507000													4	21					0	0	0.00024832	0	0
ASPSCR1	79058	broad.mit.edu	37	17	79954429	79954429	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr17:79954429C>T	uc002kcx.2	+	7	737	c.640C>T	c.(640-642)CGT>TGT	p.R214C	ASPSCR1_uc002kcw.1_Missense_Mutation_p.R214C|ASPSCR1_uc002kcy.2_Missense_Mutation_p.R214C|ASPSCR1_uc002kcz.2_Intron|ASPSCR1_uc002kda.2_Missense_Mutation_p.R137C|ASPSCR1_uc002kdb.1_Missense_Mutation_p.R137C	NM_024083	NP_076988	Q9BZE9	ASPC1_HUMAN	alveolar soft part sarcoma chromosome region,	214							protein binding		ASPSCR1/TFE3(161)	soft_tissue(118)|kidney(43)|breast(1)	162	all_neural(118;0.0878)|Ovarian(332;0.12)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CGACTTGAGCCGTCCGGAGGA	0.682000			T	TFE3	alveolar soft part sarcoma								5	27					0	0	0.000602214	0	0
COLEC12	81035	broad.mit.edu	37	18	334970	334970	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:334970C>T	uc002kkm.2	-	6	1803	c.1588G>A	c.(1588-1590)GGC>AGC	p.G530S		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	530	Collagen-like 3.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CCTGGTGGGCCCGGGGGGCCT	0.716000													3	14					0	0	6.4e-05	0	0
TMEM200C	645369	broad.mit.edu	37	18	5891769	5891769	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:5891769G>A	uc002kmx.1	-	1	335	c.294C>T	c.(292-294)GTC>GTT	p.V98V		NM_001080209	NP_001073678	A6NKL6	T200C_HUMAN	transmembrane protein 200C	98						integral to membrane					0						CCGTGGTTGGGACCCGGTGGC	0.687000													12	60					0	0	0.00244969	0	0
MC5R	4161	broad.mit.edu	37	18	13826627	13826627	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:13826627C>T	uc010xaf.1	+	1	863	c.863C>T	c.(862-864)TCC>TTC	p.S288F		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	288	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						ATGTGTAATTCCGTGATGGAC	0.458000													11	135					0	0	0.00136819	0	0
LAMA3	3909	broad.mit.edu	37	18	21419774	21419774	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:21419774G>A	uc002kuq.2	+	27	3303	c.3217G>A	c.(3217-3219)GAA>AAA	p.E1073K	LAMA3_uc002kur.2_Missense_Mutation_p.E1073K	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1073	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTTGGCCCATGAAACTCCTCC	0.443000													20	90					0	0	0.00188189	0	0
LAMA3	3909	broad.mit.edu	37	18	21533014	21533014	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:21533014G>A	uc002kuq.2	+	74	9883	c.9797G>A	c.(9796-9798)GGA>GAA	p.G3266E	LAMA3_uc002kur.2_Missense_Mutation_p.G3210E|LAMA3_uc002kus.3_Missense_Mutation_p.G1657E|LAMA3_uc002kut.3_Missense_Mutation_p.G1601E	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	3266	Laminin G-like 5.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TACACAGCTGGACAGATCCCC	0.522000													15	73					0	0	0.000422831	0	0
ZNF521	25925	broad.mit.edu	37	18	22804971	22804972	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:22804971_22804972GG>AA	uc002kvk.2	-	4	3157_3158	c.2910_2911CC>TT	c.(2908-2913)TCCCTT>TCTTTT	p.L971F	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.L971F|ZNF521_uc002kvl.2_Missense_Mutation_p.L751F	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	971	C2H2-type 23.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					AGAGTTAAAAGGGAGGGAAACC	0.480000			T	PAX5	ALL								16	61					0	0	6.4e-05	0	0
DSC3	1825	broad.mit.edu	37	18	28588419	28588419	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:28588419C>T	uc002kwj.3	-	10	1491	c.1336G>A	c.(1336-1338)GAT>AAT	p.D446N	DSC3_uc002kwi.3_Missense_Mutation_p.D446N	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	446	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CTGGGAATATCTCTAGCAAAT	0.443000													9	58					0	0	0.000442599	0	0
MEP1B	4225	broad.mit.edu	37	18	29795045	29795045	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:29795045A>G	uc002kxj.3	+	12	1627	c.1580A>G	c.(1579-1581)GAT>GGT	p.D527G		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	527	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						GCTTTTTCAGATAATGGAAAC	0.408000													9	109					0	0	0.000308642	0	0
FAM59A	64762	broad.mit.edu	37	18	29867077	29867077	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:29867077G>A	uc002kxl.2	-	4	1539	c.1483C>T	c.(1483-1485)CCC>TCC	p.P495S	FAM59A_uc002kxk.1_Missense_Mutation_p.P495S	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	495										ovary(1)|skin(1)	2						CCAGGGATGGGAAGAGGAGAA	0.522000													23	109					0	0	0.00229938	0	0
C18orf34	374864	broad.mit.edu	37	18	30873194	30873194	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:30873194C>T	uc002kxn.2	-	11	1247	c.1105G>A	c.(1105-1107)GAA>AAA	p.E369K	C18orf34_uc010xbr.1_Missense_Mutation_p.E369K|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.E369K|C18orf34_uc002kxp.2_Missense_Mutation_p.E369K	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	369	Potential.									ovary(1)	1						ACTTCCTCTTCCTTCTCCTCA	0.294000													5	18					0	0	0.000602214	0	0
KIAA1328	57536	broad.mit.edu	37	18	34802118	34802118	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:34802118G>A	uc002kzz.2	+	10	1684	c.1662G>A	c.(1660-1662)AAG>AAA	p.K554K	KIAA1328_uc002lab.2_3'UTR|KIAA1328_uc002lac.1_Silent_p.K413K|KIAA1328_uc010dnc.1_RNA	NM_020776	NP_065827	Q86T90	K1328_HUMAN	hypothetical protein LOC57536	554										central_nervous_system(1)	1				COAD - Colon adenocarcinoma(74;0.195)		CAACCCGGAAGAAGATGGGGA	0.453000													4	18					0	0	0.00024832	0	0
SLC14A2	8170	broad.mit.edu	37	18	43216985	43216985	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:43216985C>T	uc010dnj.2	+	7	1002	c.681C>T	c.(679-681)ATC>ATT	p.I227I	SLC14A2_uc002lbb.2_Silent_p.I227I|SLC14A2_uc002lbe.2_Silent_p.I227I	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	227						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TGAATTCCATCTTCAGCAAGT	0.512000													36	232					0	0	0.00170553	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560333	44560333	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:44560333C>T	uc002lcr.1	-	1	1656	c.1303G>A	c.(1303-1305)GAA>AAA	p.E435K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	435					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GACTGGCTTTCCTGGACAGGA	0.577000													22	108					0	0	0.00229938	0	0
ZBTB7C	201501	broad.mit.edu	37	18	45566752	45566752	+	Missense_Mutation	SNP	C	T	T	rs141368497		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:45566752C>T	uc002lda.2	-	1	743	c.727G>A	c.(727-729)GAC>AAC	p.D243N	ZBTB7C_uc002ldb.2_Missense_Mutation_p.D243N|ZBTB7C_uc010dnu.2_Missense_Mutation_p.D252N|ZBTB7C_uc010dnv.2_Missense_Mutation_p.D265N|ZBTB7C_uc010dnw.2_Missense_Mutation_p.D243N|ZBTB7C_uc010dnx.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dny.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dnz.1_Missense_Mutation_p.D265N|ZBTB7C_uc010dob.1_Missense_Mutation_p.D243N|ZBTB7C_uc010doc.1_Missense_Mutation_p.D252N|ZBTB7C_uc010dod.1_Missense_Mutation_p.D265N|ZBTB7C_uc010doe.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dof.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dog.1_Missense_Mutation_p.D243N|ZBTB7C_uc010doh.1_Missense_Mutation_p.D252N|ZBTB7C_uc010doi.1_Missense_Mutation_p.D243N|ZBTB7C_uc010doj.1_Missense_Mutation_p.D252N|ZBTB7C_uc010dok.1_Missense_Mutation_p.D292N|ZBTB7C_uc010dol.1_Missense_Mutation_p.D252N|ZBTB7C_uc010doa.1_Missense_Mutation_p.D265N|ZBTB7C_uc010don.1_Missense_Mutation_p.D251N|ZBTB7C_uc010doo.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dop.1_Missense_Mutation_p.D243N|ZBTB7C_uc010doq.1_Missense_Mutation_p.D252N|ZBTB7C_uc010dor.1_Missense_Mutation_p.D265N|ZBTB7C_uc010dos.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dot.1_Missense_Mutation_p.D243N|ZBTB7C_uc010dou.1_Missense_Mutation_p.D252N|ZBTB7C_uc010dom.1_Missense_Mutation_p.D252N	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	243						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GGTCTCCTGTCGGGGATGTTG	0.612000													9	26					0	0	0.000442599	0	0
MRO	83876	broad.mit.edu	37	18	48327812	48327812	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:48327812C>T	uc002lew.3	-	6	786	c.492G>A	c.(490-492)GGG>GGA	p.G164G	MRO_uc010xdn.1_Intron|MRO_uc010dpa.2_Silent_p.G178G|MRO_uc010dpb.2_Intron|MRO_uc010dpc.2_Intron|MRO_uc002lex.3_Silent_p.G164G	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	164						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		TCCATTTCCTCCCGGCAAAGG	0.468000													20	126					0	0	0.000958276	0	0
RAB27B	5874	broad.mit.edu	37	18	52546599	52546599	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:52546599G>A	uc002lfr.2	+	3	265	c.154_splice	c.e3-1	p.V52_splice		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family						protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		GTATCTTTCAGGTTTATAATG	0.388000													6	36					0	0	0.000157383	0	0
NEDD4L	23327	broad.mit.edu	37	18	55992272	55992273	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:55992272_55992273CC>TT	uc002lgy.2	+	9	832_833	c.558_559CC>TT	c.(556-561)CACCAA>CATTAA	p.Q187*	NEDD4L_uc002lgz.2_Nonsense_Mutation_p.Q187*|NEDD4L_uc002lgx.2_Nonsense_Mutation_p.Q187*|NEDD4L_uc010xee.1_Nonsense_Mutation_p.Q66*|NEDD4L_uc002lhc.2_Nonsense_Mutation_p.Q179*|NEDD4L_uc002lhd.2_Nonsense_Mutation_p.Q66*|NEDD4L_uc002lhb.2_Nonsense_Mutation_p.Q66*|NEDD4L_uc002lhe.2_Nonsense_Mutation_p.Q179*|NEDD4L_uc002lhf.2_Nonsense_Mutation_p.Q66*|NEDD4L_uc002lhg.2_Nonsense_Mutation_p.Q66*|NEDD4L_uc002lhh.2_Nonsense_Mutation_p.Q66*|NEDD4L_uc010dpm.1_Nonsense_Mutation_p.Q38*	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	187					cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						CTTCTCAGCACCAAGAGGAACT	0.490000													39	224					0	0	6.4e-05	0	0
SERPINB12	89777	broad.mit.edu	37	18	61231222	61231222	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:61231222G>A	uc010xen.1	+	5	514	c.514G>A	c.(514-516)GAA>AAA	p.E172K	SERPINB12_uc010xeo.1_Missense_Mutation_p.E192K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	172					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						TAAAATCAAGGAACTCTTCAG	0.323000													14	82					0	0	0.000422831	0	0
CNDP2	55748	broad.mit.edu	37	18	72180828	72180828	+	Silent	SNP	C	T	T	rs148490498	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:72180828C>T	uc002llm.1	+	8	939	c.777C>T	c.(775-777)ATC>ATT	p.I259I	CNDP2_uc002lln.1_Silent_p.I175I|CNDP2_uc010dqs.2_Intron	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	259						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		ACATCCTGATCCCCGGCATTA	0.597000													5	27					0	0	0.000602214	0	0
ATP9B	374868	broad.mit.edu	37	18	77067158	77067158	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr18:77067158A>G	uc002lmx.2	+	15	1711	c.1697A>G	c.(1696-1698)GAG>GGG	p.E566G	ATP9B_uc002lmv.1_RNA|ATP9B_uc002lmw.1_Missense_Mutation_p.E566G|ATP9B_uc002lmz.1_Missense_Mutation_p.E260G	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	566	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		GGCGTTACTGAGGAGACTGAG	0.542000													13	88					0	0	0.00244969	0	0
PRTN3	5657	broad.mit.edu	37	19	843590	843590	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:843590G>A	uc002lqa.1	+	2	215	c.191G>A	c.(190-192)AGC>AAC	p.S64N		NM_002777	NP_002768	P24158	PRTN3_HUMAN	myeloblastin	64	Peptidase S1.			S -> D (in Ref. 12; AA sequence).	collagen catabolic process|positive regulation of cell proliferation|proteolysis		protein binding|serine-type endopeptidase activity			ovary(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCCACCCCAGCTTCGTGCTG	0.731000													4	14					0	0	0.00024832	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881333	1881333	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:1881333T>C	uc002lug.2	-	2	639	c.233A>G	c.(232-234)TAC>TGC	p.Y78C	FAM108A1_uc002lud.2_Missense_Mutation_p.Y78C|FAM108A1_uc002lue.2_Missense_Mutation_p.Y78C|FAM108A1_uc002luf.2_Missense_Mutation_p.Y78C	NM_001130111	NP_001123583	Q96GS6	F18A1_HUMAN	hypothetical protein LOC81926 isoform 2	78						extracellular region	hydrolase activity				0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGCTGGCTGTACTGGAAGTC	0.706000													6	37					0	0	0.000978159	0	0
TMIGD2	126259	broad.mit.edu	37	19	4298302	4298302	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:4298302G>A	uc002lzx.1	-	2	133	c.87C>T	c.(85-87)CCC>CCT	p.P29P	TMIGD2_uc010dtv.1_Silent_p.P29P	NM_144615	NP_653216	Q96BF3	TMIG2_HUMAN	transmembrane and immunoglobulin domain	29	Extracellular (Potential).|Ig-like.					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0339)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGCAAGTTGGGCCCCTGCT	0.617000													6	25					0	0	0.00116845	0	0
PTPRS	5802	broad.mit.edu	37	19	5239014	5239014	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:5239014C>T	uc002mbv.2	-	13	1999	c.1765G>A	c.(1765-1767)GAG>AAG	p.E589K	PTPRS_uc002mbu.1_Missense_Mutation_p.E576K|PTPRS_uc010xin.1_Missense_Mutation_p.E576K|PTPRS_uc002mbw.2_Missense_Mutation_p.E576K|PTPRS_uc002mbx.2_Missense_Mutation_p.E580K|PTPRS_uc002mby.2_Missense_Mutation_p.E576K	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	589	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		AAGGCGTACTCCGTGTTGGGC	0.687000													19	87					0	0	0.00121646	0	0
PTPRS	5802	broad.mit.edu	37	19	5246048	5246048	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:5246048C>T	uc002mbv.2	-	10	961	c.727G>A	c.(727-729)GTG>ATG	p.V243M	PTPRS_uc002mbu.1_Missense_Mutation_p.V230M|PTPRS_uc010xin.1_Missense_Mutation_p.V230M|PTPRS_uc002mbw.2_Missense_Mutation_p.V230M|PTPRS_uc002mbx.2_Missense_Mutation_p.V234M|PTPRS_uc002mby.2_Missense_Mutation_p.V230M	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	243	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		CGCGGGGCCACGCGGCGGACT	0.667000													4	9					0	0	0.00024832	0	0
RANBP3	8498	broad.mit.edu	37	19	5931539	5931539	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:5931539G>A	uc002mdw.2	-	8	796	c.569C>T	c.(568-570)CCC>CTC	p.P190L	RANBP3_uc002mdv.2_5'UTR|RANBP3_uc002mdx.2_Missense_Mutation_p.P190L|RANBP3_uc002mdy.2_Missense_Mutation_p.P122L|RANBP3_uc002mdz.2_Missense_Mutation_p.P122L|RANBP3_uc010duq.2_Missense_Mutation_p.P100L|RANBP3_uc002mea.2_Missense_Mutation_p.P62L|RANBP3_uc010xix.1_Missense_Mutation_p.P62L	NM_007322	NP_015561	Q9H6Z4	RANB3_HUMAN	RAN binding protein 3 isoform RANBP3-d	190					intracellular transport|protein transport	cytoplasm|nucleus	Ran GTPase binding			breast(1)	1						GCCACTGCTGGGGACTGTGGG	0.652000													12	60					0	0	0.00185496	0	0
C19orf45	374877	broad.mit.edu	37	19	7573206	7573206	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:7573206C>T	uc002mgm.2	+	9	1549	c.1408C>T	c.(1408-1410)CCT>TCT	p.P470S		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	470											0						ACTGAAAAATCCTCAGGAGGG	0.607000													5	34					0	0	0.00116845	0	0
ACTL9	284382	broad.mit.edu	37	19	8808355	8808355	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:8808355C>T	uc002mkl.2	-	1	818	c.697G>A	c.(697-699)GCG>ACG	p.A233T		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	233						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						AGCATCTCCGCCAGGAAGGCG	0.637000													6	52					0	0	0.00198382	0	0
ZNF558	148156	broad.mit.edu	37	19	8921958	8921958	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:8921958C>T	uc002mkn.1	-	6	1438	c.1208G>A	c.(1207-1209)TGA>TAA	p.*403*	ZNF558_uc010xkh.1_Silent_p.*332*|ZNF558_uc010dwg.1_Silent_p.*403*	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	403					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TGCAGTAATTCATATCCATCT	0.348000													6	41					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9047175	9047175	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:9047175C>T	uc002mkp.2	-	5	34660	c.34456G>A	c.(34456-34458)GAG>AAG	p.E11486K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11488	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTGTTGTCTCTGGTTCATAT	0.507000													12	95					0	0	0.00244969	0	0
MUC16	94025	broad.mit.edu	37	19	9061857	9061857	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:9061857C>T	uc002mkp.2	-	3	25793	c.25589G>A	c.(25588-25590)GGA>GAA	p.G8530E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8532	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTGAAAATCCTGGAGATGC	0.522000													7	54					0	0	0.000157383	0	0
OR1M1	125963	broad.mit.edu	37	19	9204418	9204418	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:9204418C>T	uc010xkj.1	+	1	498	c.498C>T	c.(496-498)CTC>CTT	p.L166L		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						TGGCCCGTCTCGTTTTCTGCG	0.577000													23	115					0	0	0.000720815	0	0
ZNF560	147741	broad.mit.edu	37	19	9577806	9577806	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:9577806C>T	uc002mlp.1	-	10	2027	c.1817G>A	c.(1816-1818)GGA>GAA	p.G606E	ZNF560_uc010dwr.1_Missense_Mutation_p.G500E	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	606	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GAAGGCTTTTCCACATTTCTT	0.408000													14	74					0	0	0.000308642	0	0
ZNF709	163051	broad.mit.edu	37	19	12575985	12575985	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:12575985G>A	uc002mtv.3	-	4	912	c.751C>T	c.(751-753)CCC>TCC	p.P251S	ZNF709_uc002mtw.3_Missense_Mutation_p.P219S|ZNF709_uc002mtx.3_Missense_Mutation_p.P251S	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATTCATAGGGTTTCTCTCCA	0.393000													6	57					0	0	0.00116845	0	0
LPHN1	22859	broad.mit.edu	37	19	14262155	14262155	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:14262155C>T	uc010xnn.1	-	24	4251	c.3955G>A	c.(3955-3957)GAG>AAG	p.E1319K	LPHN1_uc010xno.1_Missense_Mutation_p.E1314K|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1319	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GCCTCTTCCTCGCCCCCGCCC	0.716000													4	13					0	0	0.00024832	0	0
OR10H1	26539	broad.mit.edu	37	19	15918098	15918098	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:15918098G>A	uc002nbq.2	-	1	839	c.750C>T	c.(748-750)GTC>GTT	p.V250V		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATAGTGCACGACCACCACAG	0.552000													5	37					0	0	0.000442599	0	0
TMEM38A	79041	broad.mit.edu	37	19	16797160	16797160	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:16797160C>T	uc002nes.2	+	5	707	c.616C>T	c.(616-618)CCA>TCA	p.P206S		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	206	Lumenal (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						CCGCTGGCTCCCAGTGTCCAA	0.562000													5	41					0	0	0.000602214	0	0
JAK3	3718	broad.mit.edu	37	19	17951087	17951087	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:17951087G>A	uc002nhn.3	-	9	1306	c.1206C>T	c.(1204-1206)CGC>CGT	p.R402R	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Silent_p.R402R|JAK3_uc010xpx.1_Silent_p.R402R	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	402	SH2; atypical.				B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GGGGGCTGCGGCGGAGAACAT	0.483000		2	Mis		acute megakaryocytic leukemia|								4	28					0	0	0.000602214	0	0
KCNN1	3780	broad.mit.edu	37	19	18084953	18084953	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:18084953C>T	uc002nht.2	+	3	566	c.256C>T	c.(256-258)CCC>TCC	p.P86S	KCNN1_uc010xqa.1_Missense_Mutation_p.P86S	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	86					synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						CTCGGGGAAACCCTCAAATGT	0.667000													6	35					0	0	0.000274275	0	0
CILP2	148113	broad.mit.edu	37	19	19655927	19655927	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:19655927G>A	uc002nmv.3	+	8	2658	c.2573G>A	c.(2572-2574)GGC>GAC	p.G858D	CILP2_uc002nmw.3_Missense_Mutation_p.G864D	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	858						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						AAGCGTAACGGCTTCCGCATC	0.716000													9	48					0	0	0.000274275	0	0
ZNF85	7639	broad.mit.edu	37	19	21131569	21131569	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:21131569C>T	uc002npg.3	+	4	376	c.249C>T	c.(247-249)GCC>GCT	p.A83A	ZNF85_uc010ecn.2_Silent_p.A18A|ZNF85_uc010eco.2_Silent_p.A31A|ZNF85_uc002npi.2_Silent_p.A24A	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	83						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						CTCATTTTGCCCAAGACCTTT	0.299000													4	50					0	0	0.000602214	0	0
ZNF208	7757	broad.mit.edu	37	19	22155111	22155111	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:22155111C>T	uc002nqp.2	-	5	2574	c.2425G>A	c.(2425-2427)GTA>ATA	p.V809I	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTATGAATTACCTCATGTTTA	0.373000													4	14					0	0	0.00116845	0	0
ZNF536	9745	broad.mit.edu	37	19	30935657	30935657	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:30935657C>T	uc002nsu.1	+	2	1326	c.1188C>T	c.(1186-1188)CTC>CTT	p.L396L	ZNF536_uc010edd.1_Silent_p.L396L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	396					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGGTCCACCTCAACAAGCTGT	0.607000													16	50					0	0	0.000422831	0	0
ZNF536	9745	broad.mit.edu	37	19	30935759	30935759	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:30935759C>T	uc002nsu.1	+	2	1428	c.1290C>T	c.(1288-1290)TAC>TAT	p.Y430Y	ZNF536_uc010edd.1_Silent_p.Y430Y	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	430					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACTCCAGGTACCTCTCCTGCC	0.642000													8	39					0	0	0.000274275	0	0
ZNF507	22847	broad.mit.edu	37	19	32844579	32844579	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:32844579T>G	uc002nte.2	+	3	1115	c.843T>G	c.(841-843)TTT>TTG	p.F281L	ZNF507_uc002ntc.2_Missense_Mutation_p.F281L|ZNF507_uc010xrn.1_Missense_Mutation_p.F281L|ZNF507_uc002ntd.2_Missense_Mutation_p.F281L	NM_001136156	NP_001129628	Q8TCN5	ZN507_HUMAN	zinc finger protein 507	281					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|kidney(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(110;0.162)					ATCCAATCTTTGAAAATGAAA	0.473000													16	102					0	0	0.000308642	0	0
WTIP	126374	broad.mit.edu	37	19	34981317	34981317	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:34981317C>T	uc002nvm.2	+	2	704	c.704C>T	c.(703-705)GCC>GTC	p.A235V		NM_001080436	NP_001073905			Wilms tumor 1 interacting protein												0	all_lung(56;5.94e-07)|Lung NSC(56;9.35e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			ATCTACGGAGCCCAGCAGGCG	0.587000													6	60					0	0	0.00198382	0	0
MLL4	9757	broad.mit.edu	37	19	36221442	36221442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:36221442C>T	uc010eei.2	+	26	5201	c.5201C>T	c.(5200-5202)TCC>TTC	p.S1734F		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1734	FYR N-terminal.				chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ACCACAGGTTCCATCCGCATT	0.607000													45	325					0	0	0.000781405	0	0
RYR1	6261	broad.mit.edu	37	19	38948139	38948139	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:38948139C>T	uc002oit.2	+	17	1924	c.1794C>T	c.(1792-1794)GTC>GTT	p.V598V	RYR1_uc002oiu.2_Silent_p.V598V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	598	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACCTCTAGGTCCTGGACGTGC	0.552000													41	178					0	0	0.000781405	0	0
ACTN4	81	broad.mit.edu	37	19	39191312	39191312	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:39191312C>T	uc002oja.1	+	2	294	c.235C>T	c.(235-237)CGA>TGA	p.R79*	ACTN4_uc010egc.1_Nonsense_Mutation_p.R79*	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	79	Actin-binding.|CH 1.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TGAGGACTTCCGAGACGGGCT	0.607000													8	40					0	0	0.000274275	0	0
PAPL	390928	broad.mit.edu	37	19	39589716	39589716	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:39589716C>T	uc002oki.2	+	4	713	c.439C>T	c.(439-441)CCG>TCG	p.P147S	PAPL_uc010egl.2_Missense_Mutation_p.P147S	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	147						extracellular region	acid phosphatase activity|metal ion binding				0						GGCTGACAACCCGAAGGCCGT	0.592000													12	92					0	0	0.000308642	0	0
SUPT5H	6829	broad.mit.edu	37	19	39963571	39963571	+	Splice_Site	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:39963571T>A	uc002olo.3	+	22	2334	c.2155_splice	c.e22+2	p.G719_splice	SUPT5H_uc002olp.3_Splice_Site_p.G719_splice|SUPT5H_uc002olq.3_Splice_Site_p.G715_splice|SUPT5H_uc002oln.3_Splice_Site_p.G719_splice|SUPT5H_uc002olr.3_Splice_Site_p.G719_splice|SUPT5H_uc002ols.1_Splice_Site_p.G342_splice|SUPT5H_uc010egp.1_Splice_Site_p.G85_splice	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a						cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCTACAAAGGTGACCTGCGAG	0.677000													4	28					0	0	0.000602214	0	0
FCGBP	8857	broad.mit.edu	37	19	40366477	40366477	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:40366477C>T	uc002omp.3	-	30	13765	c.13757G>A	c.(13756-13758)GGG>GAG	p.G4586E		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4586	VWFD 11.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CAGCGAGAGCCCTGAGGTTGT	0.667000													15	66					0	0	0.000308642	0	0
FCGBP	8857	broad.mit.edu	37	19	40424155	40424155	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:40424155G>A	uc002omp.3	-	4	2056	c.2048C>T	c.(2047-2049)CCC>CTC	p.P683L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	683	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GACAGCGAAGGGGCCATCGAG	0.637000													30	193					0	0	0.00178596	0	0
ZNF546	339327	broad.mit.edu	37	19	40521505	40521505	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:40521505C>T	uc002oms.2	+	7	2584	c.2328C>T	c.(2326-2328)CCC>CCT	p.P776P	ZNF546_uc002omt.2_Silent_p.P750P	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	776					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTGAGAAACCCTATAAATGTA	0.383000													5	37					0	0	0.000602214	0	0
CEACAM5	1048	broad.mit.edu	37	19	42213745	42213745	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:42213745G>A	uc002ork.2	+	2	332	c.211G>A	c.(211-213)GAA>AAA	p.E71K	CEACAM5_uc010ehz.1_Missense_Mutation_p.E71K|CEACAM5_uc002orj.1_Missense_Mutation_p.E71K|CEACAM5_uc002orl.2_Missense_Mutation_p.E71K	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	71	Ig-like 1.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		GTACAAAGGTGAAAGAGTGGA	0.478000													8	52					0	0	0.000958276	0	0
ERF	2077	broad.mit.edu	37	19	42752971	42752971	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:42752971C>T	uc002ote.3	-	4	1451	c.1293G>A	c.(1291-1293)TCG>TCA	p.S431S	ERF_uc002otd.3_Silent_p.S162S	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	431					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				ACTCGCCTTCCGAGATGGGCT	0.662000													22	148					0	0	0.00278032	0	0
CEACAM1	634	broad.mit.edu	37	19	43031406	43031406	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:43031406C>T	uc002otv.2	-	2	324	c.211G>A	c.(211-213)GAA>AAA	p.E71K	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.E71K|CEACAM1_uc010eij.2_Missense_Mutation_p.E71K|CEACAM1_uc002otx.2_Missense_Mutation_p.E71K|CEACAM1_uc002oty.2_Missense_Mutation_p.E71K|CEACAM1_uc002otz.2_Missense_Mutation_p.E71K|CEACAM1_uc010eik.2_Missense_Mutation_p.E71K|CEACAM1_uc002oua.2_Missense_Mutation_p.E71K|CEACAM1_uc002oub.2_Missense_Mutation_p.E71K|CEACAM1_uc002ouc.2_Missense_Mutation_p.E71K	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	71	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	TCCACTCTTTCCCCTTTGTAC	0.493000													8	200					0	0	0.000673444	0	0
PSG3	5671	broad.mit.edu	37	19	43233329	43233329	+	Missense_Mutation	SNP	G	A	A	rs149820484	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:43233329G>A	uc002oue.2	-	5	1321	c.1189C>T	c.(1189-1191)CGT>TGT	p.R397C	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Missense_Mutation_p.R397C|PSG3_uc010eil.2_Missense_Mutation_p.R419C	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	397	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GCTGAGTTACGAACAGAGCAA	0.448000													25	228					0	0	0.000586117	0	0
PSG8	440533	broad.mit.edu	37	19	43259363	43259363	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:43259363C>T	uc002ouo.2	-	4	863	c.765G>A	c.(763-765)AAG>AAA	p.K255K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Silent_p.K94K|PSG8_uc002ouh.2_Silent_p.K255K|PSG8_uc010ein.2_Silent_p.K133K|PSG8_uc002ouj.3_Silent_p.K37K|PSG8_uc002ouk.3_Silent_p.K94K|PSG8_uc002oul.3_Silent_p.K255K|PSG8_uc002oum.3_Silent_p.K162K|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.K162K	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	255	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				TTAAGACATCCTTATTCTCCC	0.483000													27	224					0	0	0.00209593	0	0
PSG6	5675	broad.mit.edu	37	19	43585170	43585170	+	Missense_Mutation	SNP	C	T	T	rs150218743		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:43585170C>T	uc002ovi.2	-	2	386	c.293G>A	c.(292-294)CGA>CAA	p.R98Q	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Missense_Mutation_p.R98Q|PSG2_uc002ovq.3_Missense_Mutation_p.R98Q|PSG2_uc010eiq.1_Missense_Mutation_p.R98Q|PSG2_uc002ovs.3_Missense_Mutation_p.R98Q|PSG2_uc002ovt.3_Missense_Mutation_p.R98Q			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	97	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGCTGTTTCTCGTCCACTATA	0.448000													46	275					0	0	0.000781405	0	0
PSG9	5678	broad.mit.edu	37	19	43762547	43762547	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:43762547G>A	uc002owd.3	-	5	1149	c.1050C>T	c.(1048-1050)CTC>CTT	p.L350L	PSG9_uc002owe.3_Silent_p.L257L|PSG9_uc010xwm.1_Silent_p.L257L|PSG9_uc002owf.3_Silent_p.L164L|PSG9_uc002owg.2_Silent_p.L257L|PSG9_uc002owh.2_Silent_p.L164L	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	350	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				AGGACAAGTCGAGGTTTTCTC	0.453000													31	216					0	0	0.00178596	0	0
IRGC	56269	broad.mit.edu	37	19	44223413	44223413	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:44223413G>A	uc002oxh.2	+	2	850	c.703G>A	c.(703-705)GAC>AAC	p.D235N		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	235						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CTGGGAGCACGACCTGCCCTC	0.667000													6	16					0	0	0.00116845	0	0
ZNF235	9310	broad.mit.edu	37	19	44791801	44791801	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:44791801T>G	uc002oza.3	-	5	1890	c.1787A>C	c.(1786-1788)GAA>GCA	p.E596A	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.E592A|ZNF235_uc010xwx.1_Missense_Mutation_p.E510A	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	596					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				GAATGGTTTTTCCCCAGTGTG	0.483000													10	66					0	0	0.000673444	0	0
KLK8	11202	broad.mit.edu	37	19	51504413	51504413	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:51504413G>A	uc002pur.1	-	2	190	c.11C>T	c.(10-12)CCC>CTC	p.P4L	KLK9_uc002puw.1_RNA|KLK8_uc002puq.1_Missense_Mutation_p.P4L|KLK8_uc002pus.1_Missense_Mutation_p.P4L|KLK8_uc002put.1_Missense_Mutation_p.P4L|KLK8_uc002puu.1_Missense_Mutation_p.P4L|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	4					cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		ACGAGGTCGGGGGCGTCCCAT	0.657000													4	33					0	0	0.00024832	0	0
ZNF613	79898	broad.mit.edu	37	19	52447895	52447895	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:52447895C>T	uc002pxz.1	+	6	1182	c.759C>T	c.(757-759)AAC>AAT	p.N253N	ZNF613_uc002pya.1_Silent_p.N217N	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	253	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		ACCAGAGAAACCACACAGGAG	0.463000													11	86					0	0	0.000978159	0	0
ZNF432	9668	broad.mit.edu	37	19	52538078	52538078	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:52538078C>T	uc002pyk.2	-	5	1172	c.854G>A	c.(853-855)GGA>GAA	p.G285E		NM_014650	NP_055465	O94892	ZN432_HUMAN	zinc finger protein 432	285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|pancreas(1)	3		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.0054)|OV - Ovarian serous cystadenocarcinoma(262;0.0182)		GGGTTTCTCTCCAGTATGAGT	0.383000													7	75					0	0	0.000157383	0	0
NLRP13	126204	broad.mit.edu	37	19	56413492	56413492	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:56413492G>A	uc010ygg.1	-	9	2723	c.2698C>T	c.(2698-2700)CTG>TTG	p.L900L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	900	LRR 4.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTCAGATTCAGGTGTGTCAGG	0.552000													6	58					0	0	0.00116845	0	0
ZNF667	63934	broad.mit.edu	37	19	56952796	56952796	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:56952796C>T	uc002qnd.2	-	5	1730	c.1568G>A	c.(1567-1569)GGA>GAA	p.G523E	ZNF667_uc010etl.2_Missense_Mutation_p.G305E|ZNF667_uc002qne.2_Missense_Mutation_p.G523E|ZNF667_uc010etm.2_Missense_Mutation_p.G466E	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TGGCTTCTCTCCAGTGTGAAT	0.433000													9	37					0	0	0.000274275	0	0
ZNF8	7554	broad.mit.edu	37	19	58806168	58806168	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr19:58806168C>T	uc002qry.1	+	4	1124	c.994C>T	c.(994-996)CGG>TGG	p.R332W	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	332	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		TACCGTCCATCGGAGGATTCA	0.572000													8	59					0	0	0.000157383	0	0
APOB	338	broad.mit.edu	37	2	21231540	21231540	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:21231540G>A	uc002red.2	-	26	8328	c.8200C>T	c.(8200-8202)CCT>TCT	p.P2734S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2734				Missing (in Ref. 15; AAA51758).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGAAGGTCAGGAACTTGAAAA	0.418000													45	319					0	0	0.00222228	0	0
C2orf71	388939	broad.mit.edu	37	2	29296579	29296579	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:29296579G>A	uc002rmt.1	-	1	549	c.549C>T	c.(547-549)GCC>GCT	p.A183A		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	183					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCTGCTGGTGGGCCTTTACCA	0.552000													16	82					0	0	0.000308642	0	0
XDH	7498	broad.mit.edu	37	2	31562439	31562439	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:31562439G>A	uc002rnv.1	-	34	3769	c.3690C>T	c.(3688-3690)ATC>ATT	p.I1230I		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	1230					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CAAATGCCGGGATCTTGTAGG	0.592000													11	110					0	0	0.000673444	0	0
NLRC4	58484	broad.mit.edu	37	2	32476427	32476427	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:32476427C>T	uc002roi.2	-	4	752	c.506G>A	c.(505-507)GGG>GAG	p.G169E	NLRC4_uc002roj.1_Missense_Mutation_p.G169E|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	169	ATP (Potential).|NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GCCAGATTCCCCTTCAATGAT	0.562000													6	60					0	0	0.00116845	0	0
BIRC6	57448	broad.mit.edu	37	2	32832604	32832604	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:32832604C>T	uc010ezu.2	+	72	14287	c.14153C>T	c.(14152-14154)CCC>CTC	p.P4718L		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4718					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AGAGGCACTCCCAGTGGCACA	0.418000													15	120					0	0	0.00244969	0	0
CRIM1	51232	broad.mit.edu	37	2	36737131	36737131	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:36737131G>A	uc002rpd.2	+	9	1546	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	503	Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				CACAGCCGAGGAACTATGTTC	0.498000													17	56					0	0	0.000958276	0	0
BCL11A	53335	broad.mit.edu	37	2	60688062	60688062	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:60688062C>T	uc002sae.1	-	4	2213	c.1985G>A	c.(1984-1986)GGC>GAC	p.G662D	BCL11A_uc002sab.2_Missense_Mutation_p.G662D|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.G331D|BCL11A_uc010ypj.1_Missense_Mutation_p.G628D|BCL11A_uc002sad.1_Missense_Mutation_p.G510D|BCL11A_uc002saf.1_Missense_Mutation_p.G628D	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	662					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GGCCGCGTAGCCGGCGAGCCA	0.622000			T	IGH@	B-CLL								48	319					0	0	0.000781405	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188403	70188403	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:70188403C>T	uc002sfz.3	-	1	995	c.418G>A	c.(418-420)GAG>AAG	p.E140K		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	140	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						CTGAGGGACTCTTTCAGGAAC	0.542000													8	33					0	0	0.000274275	0	0
ALMS1	7840	broad.mit.edu	37	2	73717795	73717795	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:73717795C>T	uc002sje.1	+	12	8823	c.8712C>T	c.(8710-8712)CAC>CAT	p.H2904H	ALMS1_uc002sjf.1_Silent_p.H2860H|ALMS1_uc002sjg.2_Silent_p.H2290H|ALMS1_uc002sjh.1_Silent_p.H2290H	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2902					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TGAGGAAACACCATTCTCCCT	0.433000													30	105					0	0	0.00178596	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95513821	95513821	+	RNA	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:95513821G>A	uc010fhp.2	-	5		c.584C>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						TGTCTTGAGCGAAGACATCAA	0.353000													35	346					0	0	0.000814825	0	0
NCAPH	23397	broad.mit.edu	37	2	97017715	97017715	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:97017715C>T	uc002svz.1	+	7	951	c.867C>T	c.(865-867)CTC>CTT	p.L289L	NCAPH_uc010fhu.1_Silent_p.L265L|NCAPH_uc010fhv.1_Silent_p.L278L|NCAPH_uc010yum.1_Silent_p.L265L|NCAPH_uc010fhw.1_Silent_p.L278L|NCAPH_uc010yun.1_Silent_p.L153L|NCAPH_uc002swa.1_Intron	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	289					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				GAGAACCTCTCGAGTTGCCAG	0.468000													11	90					0	0	0.000673444	0	0
VWA3B	200403	broad.mit.edu	37	2	98846622	98846622	+	Missense_Mutation	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:98846622T>G	uc002syo.2	+	16	2524	c.2260T>G	c.(2260-2262)TGG>GGG	p.W754G	VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Missense_Mutation_p.W273G|VWA3B_uc002sym.2_Missense_Mutation_p.W754G|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.W411G|VWA3B_uc002syp.1_Missense_Mutation_p.W146G|VWA3B_uc002syq.1_Missense_Mutation_p.W30G|VWA3B_uc002syr.1_Missense_Mutation_p.W71G	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	754										ovary(3)|large_intestine(2)|skin(1)	6						GAAGGGACCATGGGGCCTTTC	0.418000													9	63					0	0	0.000442599	0	0
LONRF2	164832	broad.mit.edu	37	2	100903447	100903447	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:100903447G>A	uc002tal.3	-	11	2639	c.1999C>T	c.(1999-2001)CTC>TTC	p.L667F	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	667	Lon.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						CGATCCTGGAGAGACGCGAAC	0.478000													9	37					0	0	0.000274275	0	0
MFSD9	84804	broad.mit.edu	37	2	103335119	103335119	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:103335119G>A	uc002tcb.2	-	6	1253	c.1185C>T	c.(1183-1185)ATC>ATT	p.I395I	MFSD9_uc010fja.2_RNA	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing	395					transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						GGAGGTCCGTGATGCACGTCC	0.647000													9	45					0	0	0.000274275	0	0
RGPD3	653489	broad.mit.edu	37	2	107040937	107040937	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:107040937C>T	uc010ywi.1	-	20	3543	c.3486G>A	c.(3484-3486)CAG>CAA	p.Q1162Q		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1162	RanBD1 1.				intracellular transport		binding			ovary(1)	1						CCTCAAATTTCTGCTTGAATT	0.448000													18	94					0	0	0.00074312	0	0
SULT1C2	6819	broad.mit.edu	37	2	108917321	108917321	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:108917321C>T	uc002tdy.2	+	4	758	c.305C>T	c.(304-306)TCT>TTT	p.S102F	SULT1C2_uc010ywp.1_Intron|SULT1C2_uc002tdx.2_Intron|SULT1C2_uc010ywq.1_Missense_Mutation_p.S116F	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	102					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						GCAATGCCCTCTCCACGGATA	0.478000													24	140					0	0	0.00127121	0	0
ANAPC1	64682	broad.mit.edu	37	2	112541923	112541923	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:112541923G>A	uc002thi.2	-	41	5219	c.4972C>T	c.(4972-4974)CCA>TCA	p.P1658S		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	1658					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TGGAGTTCTGGAAGAAGGGTA	0.438000													13	97					0	0	0.000308642	0	0
SLC35F5	80255	broad.mit.edu	37	2	114501363	114501364	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:114501363_114501364AG>GA	uc002tku.1	-	6	912_913	c.488_489CT>TC	c.(487-489)CCT>CTC	p.P163L	SLC35F5_uc002tkt.2_RNA|SLC35F5_uc002tkv.2_Missense_Mutation_p.P157L|SLC35F5_uc002tkw.2_Missense_Mutation_p.P163L	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	163					transport	integral to membrane					0						GCACATACAGAGGTTCACTCTG	0.322000													21	119					0	0	6.4e-05	0	0
UGGT1	56886	broad.mit.edu	37	2	128931494	128931494	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:128931494C>T	uc002tps.2	+	30	3612	c.3434C>T	c.(3433-3435)ACC>ATC	p.T1145I	UGGT1_uc002tpr.2_Missense_Mutation_p.T1121I	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1145					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						ATTGTGGACACCATTGTTATG	0.428000													14	56					0	0	0.000566183	0	0
POTEF	728378	broad.mit.edu	37	2	130832798	130832798	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:130832798C>T	uc010fmh.2	-	17	2647	c.2247G>A	c.(2245-2247)CAG>CAA	p.Q749Q		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	749	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						AGGACTCTTTCTGATGCATGC	0.617000													17	80					0	0	0.000422831	0	0
LOC401010	401010	broad.mit.edu	37	2	132200580	132200580	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:132200580C>T	uc002tst.2	-	1	1888	c.1422G>A	c.(1420-1422)TGG>TGA	p.W474*		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GCTGGATCTCCCAGTCACGCA	0.572000													4	35					0	0	0.00024832	0	0
NCKAP5	344148	broad.mit.edu	37	2	133542791	133542791	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:133542791C>T	uc002ttp.2	-	14	1967	c.1593G>A	c.(1591-1593)AAG>AAA	p.K531K	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	531							protein binding				0						CAGGCCTTTCCTTGGGATAAA	0.517000													26	170					0	0	0.00127121	0	0
LCT	3938	broad.mit.edu	37	2	136566592	136566592	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:136566592C>T	uc002tuu.1	-	8	3336	c.3325G>A	c.(3325-3327)GAT>AAT	p.D1109N		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1109	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TATTTCTCATCGTACGTGTGA	0.582000													8	74					0	0	0.000157383	0	0
LRP1B	53353	broad.mit.edu	37	2	141128281	141128281	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:141128281C>T	uc002tvj.1	-	71	11978	c.11006G>A	c.(11005-11007)AGA>AAA	p.R3669K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3669	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TACCTTACCTCTTTCACAGTT	0.408000										TSP Lung(27;0.18)			4	19					0	0	0.00024832	0	0
LRP1B	53353	broad.mit.edu	37	2	141533714	141533714	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:141533714G>A	uc002tvj.1	-	33	6425	c.5453C>T	c.(5452-5454)ACT>ATT	p.T1818I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1818	Extracellular (Potential).|LDL-receptor class B 18.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TACCCCAGAAGTCTTATTCCG	0.423000										TSP Lung(27;0.18)			15	61					0	0	0.000422831	0	0
LRP1B	53353	broad.mit.edu	37	2	141986887	141986887	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:141986887C>T	uc002tvj.1	-	6	1687	c.715G>A	c.(715-717)GAT>AAT	p.D239N	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	239	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAAATAAAATCCAGAGTATGA	0.294000										TSP Lung(27;0.18)			6	35					0	0	0.00116845	0	0
MBD5	55777	broad.mit.edu	37	2	149227488	149227488	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:149227488G>A	uc002twm.3	+	9	2964	c.1976G>A	c.(1975-1977)AGA>AAA	p.R659K	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.R659K|MBD5_uc002twn.1_Missense_Mutation_p.R100K	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	659						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TTGCGGAAAAGAAAACAACCA	0.478000													5	27					0	0	0.00198382	0	0
TBR1	10716	broad.mit.edu	37	2	162273044	162273044	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:162273044G>A	uc002ubw.1	+	1	425	c.123G>A	c.(121-123)TCG>TCA	p.S41S	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	41						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CCATTATCTCGACCACTGACA	0.463000													8	46					0	0	0.000274275	0	0
XIRP2	129446	broad.mit.edu	37	2	168100390	168100390	+	Nonsense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:168100390A>T	uc002udx.2	+	8	2506	c.2488A>T	c.(2488-2490)AAG>TAG	p.K830*	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Nonsense_Mutation_p.K655*|XIRP2_uc010fpq.2_Nonsense_Mutation_p.K608*|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	655					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CATCATTGAAAAGGAAAAAAT	0.383000													7	53					0	0	0.000157383	0	0
GAD1	2571	broad.mit.edu	37	2	171709222	171709222	+	Splice_Site	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:171709222A>T	uc002ugi.2	+	13	1607	c.1185_splice	c.e13-2	p.R395_splice	GAD1_uc010fqc.2_Splice_Site_p.R14_splice	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67						glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TGCTTCTTTCAGGGCCAACTC	0.478000													8	43					0	0	0.000157383	0	0
GORASP2	26003	broad.mit.edu	37	2	171819405	171819405	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:171819405C>T	uc002ugk.2	+	9	1107	c.967C>T	c.(967-969)CCA>TCA	p.P323S	GORASP2_uc002ugj.2_Missense_Mutation_p.P255S|GORASP2_uc010zdl.1_Missense_Mutation_p.P335S|GORASP2_uc010zdm.1_Missense_Mutation_p.P279S|GORASP2_uc002ugl.2_Missense_Mutation_p.P255S|GORASP2_uc002ugm.2_Missense_Mutation_p.P105S	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	323	Pro-rich.					Golgi membrane				breast(1)|central_nervous_system(1)	2						CCTCAACCTCCCAGCACCACA	0.473000													8	44					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179536776	179536776	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:179536776C>T	uc010zfg.1	-	150	31470	c.31246G>A	c.(31246-31248)GAA>AAA	p.E10416K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E7077K|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11343							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAACTTTTTCAACTCTGTGT	0.338000													6	63					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179572470	179572470	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:179572470C>T	uc010zfg.1	-	97	25316	c.25092G>A	c.(25090-25092)CAG>CAA	p.Q8364Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.Q5025Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9291							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCAGCTGAGCTGCACGTATT	0.463000													5	61					0	0	0.000602214	0	0
NUP35	129401	broad.mit.edu	37	2	184024281	184024281	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:184024281C>T	uc002upf.2	+	8	907	c.804C>T	c.(802-804)ATC>ATT	p.I268I	NUP35_uc010zfs.1_Silent_p.I250I|NUP35_uc010zft.1_Silent_p.I150I|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	268					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						CACCACCAATCAAAACTCTAG	0.398000													8	53					0	0	0.000157383	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800850	185800850	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:185800850G>A	uc002uph.2	+	4	1321	c.727G>A	c.(727-729)GGA>AGA	p.G243R		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	243						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGCCTCAGTGGGAAAAGGATT	0.423000													10	52					0	0	0.000673444	0	0
DNAH7	56171	broad.mit.edu	37	2	196729521	196729521	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:196729521G>A	uc002utj.3	-	41	6959	c.6858C>T	c.(6856-6858)ATC>ATT	p.I2286I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2286					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CCACATCTGCGATTTCTCTGT	0.378000													16	97					0	0	0.000566183	0	0
DNAH7	56171	broad.mit.edu	37	2	196759936	196759936	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:196759936C>T	uc002utj.3	-	30	4761	c.4660G>A	c.(4660-4662)GAT>AAT	p.D1554N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1554					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GGAAACAAATCCGAAGTAATT	0.308000													7	23					0	0	0.00198382	0	0
DNAH7	56171	broad.mit.edu	37	2	196825163	196825163	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:196825163C>T	uc002utj.3	-	18	2813	c.2712G>A	c.(2710-2712)GCG>GCA	p.A904A		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	904	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTTCTCCATCGCCTTTTCAA	0.378000													18	85					0	0	0.000958276	0	0
TRAK2	66008	broad.mit.edu	37	2	202248842	202248843	+	Missense_Mutation	DNP	AA	CC	CC			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:202248842_202248843AA>CC	uc002uyb.3	-	15	2506_2507	c.2060_2061TT>GG	c.(2059-2061)GTT>GGG	p.V687G		NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	687				Missing (in Ref. 2).		early endosome|plasma membrane	GABA receptor binding				0						ACCTGGGGGTAACCTGAGTGAT	0.426000													5	36					0	0	6.4e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	203972603	203972604	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:203972603_203972604GG>TT	uc002uzt.3	+	13	1887_1888	c.1554_1555GG>TT	c.(1552-1557)TTGGGG>TTTTGG	p.518_519LG>FW		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	518_519							binding			ovary(1)|skin(1)	2						ATGGTTCCTTGGGGAGTCAGTC	0.460000													11	657					0	0	6.4e-05	0	0
INO80D	54891	broad.mit.edu	37	2	206869496	206869496	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:206869496G>A	uc002vaz.3	-	11	3085	c.2680C>T	c.(2680-2682)CCT>TCT	p.P894S		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	626					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						AGGTTGACAGGGAGATTGCCC	0.557000													10	62					0	0	0.000442599	0	0
ERBB4	2066	broad.mit.edu	37	2	212576792	212576792	+	Silent	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:212576792T>G	uc002veg.1	-	9	1205	c.1107A>C	c.(1105-1107)CTA>CTC	p.L369L	ERBB4_uc002veh.1_Silent_p.L369L|ERBB4_uc010zji.1_Silent_p.L369L|ERBB4_uc010zjj.1_Silent_p.L369L|ERBB4_uc010fut.1_Silent_p.L369L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	369	Extracellular (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TACCAGTGACTAGAAAGATCA	0.343000										TSP Lung(8;0.080)			10	26					0	0	0.00136819	0	0
ABCA12	26154	broad.mit.edu	37	2	215831615	215831615	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:215831615G>A	uc002vew.2	-	39	6061	c.5841C>T	c.(5839-5841)TTC>TTT	p.F1947F	ABCA12_uc002vev.2_Silent_p.F1629F|ABCA12_uc010zjn.1_Silent_p.F874F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1947					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTCGCAGAAGGAAATTATTCA	0.383000													5	41					0	0	0.00116845	0	0
FAM134A	79137	broad.mit.edu	37	2	220047132	220047132	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:220047132C>T	uc002vjw.3	+	9	1549	c.1413C>T	c.(1411-1413)CCC>CCT	p.P471P	FAM134A_uc010fwc.2_Silent_p.P264P|FAM134A_uc002vjx.2_Intron	NM_024293	NP_077269	Q8NC44	F134A_HUMAN	hypothetical protein LOC79137	471						endoplasmic reticulum|integral to membrane				ovary(1)|central_nervous_system(1)	2		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CACCTGTTCCCCAGGACTCAC	0.617000													13	63					0	0	0.000308642	0	0
COL4A4	1286	broad.mit.edu	37	2	227945167	227945167	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:227945167C>T	uc010zlt.1	-	24	2449	c.1795G>A	c.(1795-1797)GGA>AGA	p.G599R		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	599	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		ACTGGAGGTCCTGGATCCCCT	0.463000													24	111					0	0	0.000586117	0	0
SPHKAP	80309	broad.mit.edu	37	2	228858297	228858297	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:228858297C>T	uc002vpq.2	-	9	4721	c.4674G>A	c.(4672-4674)ATG>ATA	p.M1558I	SPHKAP_uc002vpp.2_Intron|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1558						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGTCCAGATCCATAATGCCAA	0.443000													3	9					0	0	0.00024832	0	0
DIS3L2	129563	broad.mit.edu	37	2	232952409	232952409	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:232952409C>T	uc010fxz.2	+	6	855	c.579C>T	c.(577-579)CTC>CTT	p.L193L	DIS3L2_uc002vsm.3_RNA|DIS3L2_uc002vsn.1_Silent_p.L193L|DIS3L2_uc002vso.2_RNA	NM_152383	NP_689596	Q8IYB7	DI3L2_HUMAN	DIS3 mitotic control homolog (S.	193							exonuclease activity|ribonuclease activity|RNA binding			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(139;0.00809)|Renal(207;0.0113)|Acute lymphoblastic leukemia(138;0.0195)|all_lung(227;0.0465)|Lung NSC(271;0.136)		Epithelial(121;1.6e-13)|BRCA - Breast invasive adenocarcinoma(100;0.00104)|LUSC - Lung squamous cell carcinoma(224;0.0109)|Lung(119;0.0149)		TTAAGAAACTCTCAGTTTGTG	0.403000													5	34					0	0	0.000602214	0	0
TRPM8	79054	broad.mit.edu	37	2	234894442	234894442	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:234894442C>T	uc002vvh.2	+	21	2912	c.2872C>T	c.(2872-2874)CCC>TCC	p.P958S	TRPM8_uc010fyj.2_Missense_Mutation_p.P536S|TRPM8_uc010fyk.2_RNA	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	958	Extracellular (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GATCACCATCCCCCTGGTGTG	0.542000													7	48					0	0	0.00198382	0	0
CXCR7	57007	broad.mit.edu	37	2	237489144	237489144	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:237489144G>A	uc010fyq.2	+	3	266	c.36G>A	c.(34-36)GGG>GGA	p.G12G	CXCR7_uc002vwd.2_Silent_p.G12G	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	12	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		CAGAGCCAGGGAACTTCTCGG	0.507000													5	65					0	0	0.000602214	0	0
COL6A3	1293	broad.mit.edu	37	2	238274679	238274679	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:238274679C>T	uc002vwl.2	-	12	5786	c.5501_splice	c.e12-1	p.A1834_splice	COL6A3_uc002vwo.2_Splice_Site_p.A1628_splice|COL6A3_uc010znj.1_Splice_Site_p.A1227_splice	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor						axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGATTACAAGCTGGAAAGGAG	0.512000													7	60					0	0	0.00198382	0	0
SCLY	51540	broad.mit.edu	37	2	238976788	238976788	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:238976788C>T	uc010fyv.2	+	3	349	c.285C>T	c.(283-285)TTC>TTT	p.F95F	SCLY_uc002vxm.3_Silent_p.F62F|SCLY_uc002vxn.2_Silent_p.F95F|SCLY_uc010znq.1_Silent_p.F95F|SCLY_uc010znr.1_Intron	NM_016510	NP_057594	Q96I15	SCLY_HUMAN	selenocysteine lyase	95					cellular amino acid metabolic process	cytosol	pyridoxal phosphate binding|selenocysteine lyase activity|transferase activity			ovary(2)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;1.37e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.6e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;8.25e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000128)|Lung(119;0.0118)|LUSC - Lung squamous cell carcinoma(224;0.0285)		ATATAATCTTCACTTCCGGGG	0.413000													10	47					0	0	0.000978159	0	0
ESPNL	339768	broad.mit.edu	37	2	239009110	239009110	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:239009110C>T	uc002vxq.3	+	1	160	c.50C>T	c.(49-51)ACG>ATG	p.T17M		NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	17	ANK 1.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GATGTGGCGACGTTGGAGCGG	0.711000													6	22					0	0	0.00198382	0	0
ANGPT4	51378	broad.mit.edu	37	20	896765	896765	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:896765C>T	uc002wei.2	-	1	196	c.93G>A	c.(91-93)AGG>AGA	p.R31R	ANGPT4_uc010zpn.1_Silent_p.R25R	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	31					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TCTCGCAGCCCCTATCCGCCT	0.607000													12	48					0	0	0.00185496	0	0
SIRPB1	10326	broad.mit.edu	37	20	1546882	1546882	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:1546882G>A	uc010gai.2	-	5	1215	c.1116C>T	c.(1114-1116)CTC>CTT	p.L372L	SIRPB1_uc002wfk.3_Silent_p.L155L	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	372	Helical; (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GGAGAGCTACGAGGAGTGGAG	0.587000													10	20					0	0	0.000978159	0	0
SIRPG	55423	broad.mit.edu	37	20	1616836	1616836	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:1616836C>T	uc002wfm.1	-	3	811	c.746G>A	c.(745-747)CGA>CAA	p.R249Q	SIRPG_uc002wfn.1_Missense_Mutation_p.R249Q|SIRPG_uc002wfo.1_Intron|uc002wfp.1_Intron	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	249	Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						TCCTCTACCTCGGATGGCCTC	0.622000													8	55					0	0	0.000442599	0	0
SLC4A11	83959	broad.mit.edu	37	20	3211822	3211822	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:3211822G>A	uc002wig.2	-	8	1111	c.1063C>T	c.(1063-1065)CCC>TCC	p.P355S	SLC4A11_uc010zqe.1_Missense_Mutation_p.P382S|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Missense_Mutation_p.P339S	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	355	Cytoplasmic (Potential).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GGGTACAAGGGGAACCTGCGT	0.602000													27	91					0	0	0.00178596	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029697	13029697	+	Silent	SNP	C	T	T	rs151327623		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:13029697C>T	uc002wod.1	+	2	511	c.222C>T	c.(220-222)ACC>ACT	p.T74T	SPTLC3_uc002woc.2_Silent_p.T74T	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	74	Helical; (Potential).				sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GAATTGGAACCCTGTTTGGCT	0.408000													33	79					0	0	0.0024448	0	0
BFSP1	631	broad.mit.edu	37	20	17474832	17474832	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:17474832C>T	uc002wpo.2	-	8	1924	c.1885G>A	c.(1885-1887)GAG>AAG	p.E629K	BFSP1_uc002wpp.2_Missense_Mutation_p.E504K|BFSP1_uc010zrn.1_Missense_Mutation_p.E490K|BFSP1_uc010zro.1_Missense_Mutation_p.E490K	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	629	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						GAAATCTTCTCGATAGATTCC	0.488000													46	158					0	0	0.00222228	0	0
CD93	22918	broad.mit.edu	37	20	23065859	23065859	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:23065859T>A	uc002wsv.2	-	1	1119	c.971A>T	c.(970-972)AAA>ATA	p.K324I		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	324	EGF-like 2.|Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CGTGTAGTTTTTCCCATGGGG	0.637000													5	51					0	0	0.000602214	0	0
ACSS1	84532	broad.mit.edu	37	20	24994654	24994654	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:24994654G>A	uc002wub.2	-	9	2273	c.1395C>T	c.(1393-1395)CTC>CTT	p.L465L	ACSS1_uc002wuc.2_Silent_p.L463L|ACSS1_uc010gdc.2_Silent_p.L260L|ACSS1_uc002wud.1_RNA|ACSS1_uc002wua.2_Silent_p.L382L	NM_032501	NP_115890	Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	465					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			ovary(1)|skin(1)	2					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CCATGGCAGGGAGGATTTCCG	0.587000													4	17					0	0	0.000602214	0	0
C20orf112	140688	broad.mit.edu	37	20	31044018	31044018	+	Missense_Mutation	SNP	G	A	A	rs146253793	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:31044018G>A	uc002wxu.3	-	3	447	c.290C>T	c.(289-291)CCG>CTG	p.P97L	C20orf112_uc010gec.2_5'UTR	NM_080616	NP_542183	Q96MY1	CT112_HUMAN	hypothetical protein LOC140688	97											0						TGCCGTGGCCGGCGGGAGCTT	0.682000													10	66					0	0	0.000673444	0	0
SAMHD1	25939	broad.mit.edu	37	20	35526320	35526320	+	Nonsense_Mutation	SNP	G	A	A	rs149846637		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:35526320G>A	uc002xgh.1	-	15	1781	c.1651C>T	c.(1651-1653)CGA>TGA	p.R551*	SAMHD1_uc010gft.1_RNA	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	551					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				CAATATACTCGAATCAGCTGC	0.408000													9	110					0	0	0.000274275	0	0
PTPRT	11122	broad.mit.edu	37	20	40727098	40727098	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:40727098G>A	uc002xkg.2	-	27	3993	c.3809C>T	c.(3808-3810)TCC>TTC	p.S1270F	PTPRT_uc010ggj.2_Missense_Mutation_p.S1289F|PTPRT_uc010ggi.2_Missense_Mutation_p.S473F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1270	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CACCACAGAGGAGCAGTTGTA	0.597000													13	93					0	0	0.00185496	0	0
JPH2	57158	broad.mit.edu	37	20	42788512	42788512	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:42788512C>T	uc002xli.1	-	2	1788	c.915G>A	c.(913-915)GTG>GTA	p.V305V		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	305	MORN 7.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AGCGTTCGCTCACGCCGAAGC	0.687000													4	27					0	0	0.00024832	0	0
PABPC1L	80336	broad.mit.edu	37	20	43561048	43561048	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:43561048G>A	uc010ggv.1	+	9	1387	c.1305G>A	c.(1303-1305)TGG>TGA	p.W435*	PABPC1L_uc010zwq.1_Intron|PABPC1L_uc002xmv.2_Intron|PABPC1L_uc002xmw.2_5'UTR|PABPC1L_uc002xmx.2_5'UTR	NM_001124756	NP_001118228	Q4VXU2	PAP1L_HUMAN	poly(A)-binding protein, cytoplasmic 1-like	435	Pro-rich.						nucleotide binding|RNA binding			ovary(1)	1						CCCCCAGGTGGACATCCCAGC	0.612000													21	67					0	0	0.00188189	0	0
UBE2C	11065	broad.mit.edu	37	20	44444545	44444545	+	Silent	SNP	C	T	T	rs61760191		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:44444545C>T	uc002xpm.2	+	5	554	c.474C>T	c.(472-474)AAC>AAT	p.N158N	UBE2C_uc002xpl.2_Silent_p.N140N|UBE2C_uc002xpn.2_Silent_p.N119N|UBE2C_uc002xpo.2_Silent_p.N129N|UBE2C_uc002xpp.2_3'UTR|UBE2C_uc002xpq.2_Silent_p.N119N	NM_007019	NP_008950	O00762	UBE2C_HUMAN	ubiquitin-conjugating enzyme E2C isoform 1	158					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|cyclin catabolic process|exit from mitosis|free ubiquitin chain polymerization|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|positive regulation of exit from mitosis|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination|protein K48-linked ubiquitination|spindle organization	anaphase-promoting complex|cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity				0		Myeloproliferative disorder(115;0.0122)				TCTGGAAAAACCCCACAGGTG	0.552000													7	134					0	0	0.000274275	0	0
SLC12A5	57468	broad.mit.edu	37	20	44672273	44672273	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:44672273G>A	uc010zxl.1	+	10	1384	c.1308G>A	c.(1306-1308)GGG>GGA	p.G436G	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Silent_p.G413G	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	436	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GTTTTGCAGGGATCATGGCTG	0.458000													13	78					0	0	0.00185496	0	0
SLC12A5	57468	broad.mit.edu	37	20	44681630	44681630	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:44681630C>T	uc010zxl.1	+	19	2557	c.2481C>T	c.(2479-2481)GCC>GCT	p.A827A	SLC12A5_uc002xrb.2_Silent_p.A804A	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	827					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCCACTTAGCCCTGCTGGTCA	0.592000													6	25					0	0	0.00116845	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354695	45354696	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:45354695_45354696CC>TT	uc002xsl.2	+	2	1117_1118	c.1020_1021CC>TT	c.(1018-1023)GGCCTC>GGTTTC	p.L341F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	341	Extracellular (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGCAGACAGGCCTCCCTGGAGA	0.599000													10	63					0	0	6.4e-05	0	0
EYA2	2139	broad.mit.edu	37	20	45702823	45702824	+	Nonsense_Mutation	DNP	CC	AT	AT	rs149474635		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:45702823_45702824CC>AT	uc002xsm.2	+	7	884_885	c.510_511CC>AT	c.(508-513)CCCCAG>CCATAG	p.Q171*	EYA2_uc010ghp.2_Nonsense_Mutation_p.Q171*|EYA2_uc002xsn.2_Nonsense_Mutation_p.Q176*|EYA2_uc002xso.2_Nonsense_Mutation_p.Q171*|EYA2_uc002xsp.2_Nonsense_Mutation_p.Q171*|EYA2_uc002xsq.2_Nonsense_Mutation_p.Q171*	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	171					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CCGGCTTCCCCCAGAGCCAGTA	0.599000													8	75					0	0	6.4e-05	0	0
NFATC2	4773	broad.mit.edu	37	20	50133368	50133368	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:50133368G>A	uc002xwd.2	-	3	1507	c.1287C>T	c.(1285-1287)AGC>AGT	p.S429S	NFATC2_uc002xwc.2_Silent_p.S429S|NFATC2_uc010zyv.1_Silent_p.S210S|NFATC2_uc010zyw.1_Silent_p.S210S|NFATC2_uc010zyx.1_Silent_p.S409S|NFATC2_uc010zyy.1_Silent_p.S210S|NFATC2_uc010zyz.1_Silent_p.S210S|NFATC2_uc002xwe.2_Silent_p.S409S	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	429	RHD.				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CAGCCCCTCGGCTGCCTTCTG	0.557000													9	59					0	0	0.000442599	0	0
PCK1	5105	broad.mit.edu	37	20	56136488	56136488	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:56136488C>T	uc002xyn.3	+	2	184	c.21C>T	c.(19-21)AAC>AAT	p.N7N	PCK1_uc010zzm.1_Translation_Start_Site	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	7					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			AGCTGCAAAACGGCCTGAACC	0.532000													21	107					0	0	0.00278032	0	0
C20orf151	140893	broad.mit.edu	37	20	60990901	60990901	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:60990901G>A	uc002ycw.1	-	7	644	c.487C>T	c.(487-489)CCG>TCG	p.P163S		NM_080833	NP_543023	Q8NC74	CT151_HUMAN	hypothetical protein LOC140893	163											0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;6.43e-06)			TGGCCTCCCGGTGGCTTCTCT	0.716000													8	25					0	0	0.000274275	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981702	61981702	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:61981702C>T	uc002yes.2	-	5	1239	c.1061G>A	c.(1060-1062)CGC>CAC	p.R354H	CHRNA4_uc002yet.1_Missense_Mutation_p.R178H|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.R283H|CHRNA4_uc002yev.1_Missense_Mutation_p.R178H|CHRNA4_uc010gkf.1_Missense_Mutation_p.R178H	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	354	Cytoplasmic (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GAGGAGCAGGCGTGGCACGAT	0.637000													7	50					0	0	0.000274275	0	0
PRIC285	85441	broad.mit.edu	37	20	62194861	62194861	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:62194861G>A	uc002yfm.2	-	9	6206	c.5314C>T	c.(5314-5316)CCC>TCC	p.P1772S	PRIC285_uc002yfl.1_Missense_Mutation_p.P1203S	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	1772					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			GAGCCGTAGGGGACGGGGCAG	0.736000													5	7					0	0	0.000602214	0	0
RTEL1	51750	broad.mit.edu	37	20	62316916	62316917	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr20:62316916_62316917CC>TT	uc002yfu.1	+	15	1575_1576	c.1232_1233CC>TT	c.(1231-1233)TCC>TTT	p.S411F	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Missense_Mutation_p.S411F|RTEL1_uc011abd.1_Missense_Mutation_p.S435F|RTEL1_uc011abe.1_Missense_Mutation_p.S188F|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	411					DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			AGCCCTGGTTCCCCAGCAGGGC	0.653000													10	36					0	0	6.4e-05	0	0
LIPI	149998	broad.mit.edu	37	21	15561360	15561360	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:15561360G>A	uc002yjm.2	-	2	500	c.490C>T	c.(490-492)CTT>TTT	p.L164F	LIPI_uc010gkw.1_Missense_Mutation_p.L97F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	143					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		CTTACCAAAAGATTTTTAATG	0.333000													4	41					0	0	0.000602214	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19685372	19685372	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:19685372C>T	uc002ykw.2	-	18	2086	c.2055G>A	c.(2053-2055)ACG>ACA	p.T685T		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	685	Extracellular (Potential).|SRCR.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						CATTGTTGTTCGTtgtgccat	0.229000													6	72					0	0	0.00198382	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19715909	19715909	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:19715909C>T	uc002ykw.2	-	12	1373	c.1342G>A	c.(1342-1344)GAG>AAG	p.E448K		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	448	Extracellular (Potential).|MAM.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						ACTGTCTTCTCCATATTTTGG	0.308000													12	60					0	0	0.00136819	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28327191	28327191	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:28327191C>T	uc002ymg.2	-	2	1834	c.1105_splice	c.e2-1	p.D369_splice		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1						proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CACATAAATCCTGCCCAGGAG	0.478000													12	29					0	0	0.00136819	0	0
TTC3	7267	broad.mit.edu	37	21	38524315	38524315	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:38524315A>T	uc002yvz.2	+	26	2504	c.2399A>T	c.(2398-2400)AAT>ATT	p.N800I	TTC3_uc011aee.1_Missense_Mutation_p.N490I|TTC3_uc002ywa.2_Missense_Mutation_p.N800I|TTC3_uc002ywb.2_Missense_Mutation_p.N800I|TTC3_uc010gnf.2_Missense_Mutation_p.N565I|TTC3_uc002ywc.2_Missense_Mutation_p.N490I|TTC3_uc011aed.1_Missense_Mutation_p.N490I	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	800					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				CCACCCAAAAATGAAGAGCAG	0.328000													23	95					0	0	0.00278032	0	0
DSCAM	1826	broad.mit.edu	37	21	41684099	41684099	+	Silent	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:41684099G>T	uc002yyq.1	-	9	2423	c.1971C>A	c.(1969-1971)TCC>TCA	p.S657S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	657	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCGAGAGATTGGAAATCCTCA	0.537000													17	50					1.99824e-07	6.55593e-07	0.000566183	1	0
C2CD2	25966	broad.mit.edu	37	21	43342110	43342110	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:43342110C>T	uc002yzw.2	-	3	705	c.463G>A	c.(463-465)GAC>AAC	p.D155N	C2CD2_uc002yzu.2_5'Flank|C2CD2_uc002yzv.2_5'UTR|C2CD2_uc002yzx.1_5'UTR	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	155						cytosol|extracellular region|nucleus				ovary(1)	1						AGCCGCATGTCGTACAGCCGG	0.542000													10	35					0	0	0.00244969	0	0
MCM3AP	8888	broad.mit.edu	37	21	47704348	47704348	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr21:47704348G>A	uc002zir.1	-	1	889	c.853C>T	c.(853-855)CCC>TCC	p.P285S	C21orf57_uc002zit.1_5'Flank|C21orf57_uc002ziu.1_5'Flank|C21orf57_uc002ziv.2_5'Flank|C21orf57_uc002ziw.2_5'Flank|C21orf57_uc002zix.2_5'Flank|C21orf57_uc010gqh.2_5'Flank|C21orf57_uc002ziy.2_5'Flank	NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	285					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					ATTAGGCTGGGAAGTGGTTCC	0.562000													5	116					0	0	0.00116845	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20128403	20128403	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:20128403G>A	uc002zrq.2	+	7	868	c.762G>A	c.(760-762)GTG>GTA	p.V254V	ZDHHC8_uc002zrr.1_Silent_p.V254V|ZDHHC8_uc010gsa.2_Silent_p.V60V	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	254	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					GGTACGTGGTGGAGCCACCCC	0.627000													11	51					0	0	0.00136819	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868460	22868460	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:22868460G>A	uc002zwe.2	-	2	1748	c.1495C>T	c.(1495-1497)CAG>TAG	p.Q499*	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	499					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		GATCCTGGCTGAACTGAAGTT	0.328000													9	76					0	0	0.000274275	0	0
RTDR1	27156	broad.mit.edu	37	22	23401696	23401696	+	Missense_Mutation	SNP	C	T	T	rs35881601	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:23401696C>T	uc002zwt.2	-	7	1149	c.991G>A	c.(991-993)GAA>AAA	p.E331K		NM_014433	NP_055248	Q9UHP6	RTDR1_HUMAN	rhabdoid tumor deletion region protein 1	331							binding			ovary(1)	1	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.175)		TGTAAGGCTTCGGCCACTTGA	0.582000													20	99					0	0	0.000958276	0	0
ZNRF3	84133	broad.mit.edu	37	22	29446055	29446055	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:29446055C>T	uc003aeg.2	+	8	1751	c.1586C>T	c.(1585-1587)CCT>CTT	p.P529L	ZNRF3_uc003aeh.1_Missense_Mutation_p.P529L	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	629	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GGCTCCCCGCCTCCCGAGGAG	0.741000													7	56					0	0	0.000157383	0	0
GRAP2	9402	broad.mit.edu	37	22	40356158	40356158	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:40356158G>A	uc003ayh.1	+	4	533	c.270G>A	c.(268-270)GGG>GGA	p.G90G	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Silent_p.G64G|GRAP2_uc011aon.1_Intron|GRAP2_uc010gya.1_Silent_p.G90G|GRAP2_uc011aoo.1_Silent_p.G18G|GRAP2_uc011aop.1_Intron|GRAP2_uc011aoq.1_Missense_Mutation_p.G34R|GRAP2_uc003ayj.1_Silent_p.G90G	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	90	SH2.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GCTCCCCAGGGGACTTCTCCA	0.557000													27	160					0	0	0.00127121	0	0
NAGA	4668	broad.mit.edu	37	22	42463188	42463188	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:42463188G>A	uc003bbx.2	-	5	568	c.431C>T	c.(430-432)ACC>ATC	p.T144I	NAGA_uc003bby.2_Missense_Mutation_p.T144I|NAGA_uc003bbw.3_Missense_Mutation_p.T144I	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	144					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						CTCGGCGAAGGTCTGAGCATC	0.612000													27	150					0	0	0.00106085	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45244822	45244822	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:45244822G>A	uc003bfd.2	+	15	1661	c.1389G>A	c.(1387-1389)GTG>GTA	p.V463V	PRR5-ARHGAP8_uc003bfc.2_Silent_p.V384V|PRR5-ARHGAP8_uc011aqi.1_Silent_p.V375V|PRR5-ARHGAP8_uc011aqj.1_Silent_p.V289V|ARHGAP8_uc003bfi.2_Silent_p.V253V|ARHGAP8_uc010gzv.2_Silent_p.V253V|ARHGAP8_uc003bfj.2_Silent_p.V284V|ARHGAP8_uc003bfk.2_Silent_p.V253V|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GGAAGCCCGTGAACTTTGACG	0.617000													17	108					0	0	0.000422831	0	0
PKDREJ	10343	broad.mit.edu	37	22	46653538	46653538	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr22:46653538G>A	uc003bhh.2	-	1	5682	c.5682C>T	c.(5680-5682)TCC>TCT	p.S1894S		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1894	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GCCTCAGTGTGGAATTAAACC	0.393000													18	141					0	0	0.00074312	0	0
LRRN1	57633	broad.mit.edu	37	3	3886533	3886533	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:3886533C>T	uc003bpt.3	+	2	969	c.208C>T	c.(208-210)CTC>TTC	p.L70F	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	70	LRRNT.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TCCCAGTAACCTCTCTAGTGA	0.453000													6	62					0	0	0.00116845	0	0
ITPR1	3708	broad.mit.edu	37	3	4808225	4808225	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:4808225C>T	uc003bqa.2	+	42	5760	c.5412C>T	c.(5410-5412)TTC>TTT	p.F1804F	ITPR1_uc010hca.1_Silent_p.F1789F|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.F774F	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1852	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		ACTCCTTTTTCTGTCGCTTGA	0.423000													14	58					0	0	0.000308642	0	0
SRGAP3	9901	broad.mit.edu	37	3	9146374	9146374	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:9146374A>C	uc003brf.1	-	3	1089	c.413T>G	c.(412-414)CTC>CGC	p.L138R	SRGAP3_uc003brg.1_Missense_Mutation_p.L138R|SRGAP3_uc003bri.1_RNA|SRGAP3_uc003brk.2_Missense_Mutation_p.L138R	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	138					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CTTTTTGAAGAGTCTGATGAC	0.552000			T	RAF1	pilocytic astrocytoma								13	83					0	0	0.00185496	0	0
C3orf20	84077	broad.mit.edu	37	3	14744758	14744758	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:14744758G>T	uc003byy.2	+	6	1271	c.867G>T	c.(865-867)TTG>TTT	p.L289F	C3orf20_uc003byz.2_Missense_Mutation_p.L167F|C3orf20_uc003bza.2_Missense_Mutation_p.L167F|C3orf20_uc003byx.1_Missense_Mutation_p.L289F	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	289						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TGCAGGAGTTGTGTCGCCACA	0.622000													22	132					2.32416e-17	7.67741e-17	0.00229938	1	0
FGD5	152273	broad.mit.edu	37	3	14964556	14964556	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:14964556G>C	uc003bzc.2	+	16	3921	c.3811G>C	c.(3811-3813)GTG>CTG	p.V1271L	FGD5_uc011avk.1_Missense_Mutation_p.V1271L|FGD5_uc003bzd.2_Missense_Mutation_p.V349L	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	1271	FYVE-type.				actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CCTGCAGATCGTGTGCCGGAA	0.607000													7	94					0	0	0.000157383	0	0
OXSM	54995	broad.mit.edu	37	3	25833013	25833013	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:25833013C>T	uc003cdn.2	+	2	609	c.502C>T	c.(502-504)CAG>TAG	p.Q168*	NGLY1_uc011awo.1_5'Flank|OXSM_uc011awp.1_Intron|OXSM_uc010hfh.2_Nonsense_Mutation_p.Q168*	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	168					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						TTTGAATTTTCAGACAAAAGG	0.433000													10	88					0	0	0.000978159	0	0
SLC4A7	9497	broad.mit.edu	37	3	27427485	27427485	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:27427485G>A	uc003cdv.2	-	23	3434	c.3363C>T	c.(3361-3363)CTC>CTT	p.L1121L	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_Silent_p.L1002L|SLC4A7_uc011aww.1_Silent_p.L1130L|SLC4A7_uc011awx.1_Silent_p.L1117L|SLC4A7_uc011awy.1_Silent_p.L1113L|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_Silent_p.L1002L|SLC4A7_uc011axb.1_Silent_p.L1117L|SLC4A7_uc010hfl.2_Silent_p.L671L|SLC4A7_uc003cdw.2_Silent_p.L997L	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	1121	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						ACAGGTCCATGAGTTTGCGCA	0.284000													28	173					0	0	0.00178596	0	0
SLC22A14	9389	broad.mit.edu	37	3	38347827	38347827	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:38347827C>T	uc010hhc.1	+	2	352	c.310C>T	c.(310-312)CTG>TTG	p.L104L	SLC22A14_uc003cia.2_Silent_p.L104L|SLC22A14_uc003cib.2_Silent_p.L104L|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	104	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CAGCTGGATCCTGGCAGTGGG	0.537000													11	84					0	0	0.000673444	0	0
SCN5A	6331	broad.mit.edu	37	3	38603945	38603945	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:38603945G>A	uc003cio.2	-	22	4118	c.3924C>T	c.(3922-3924)CTC>CTT	p.L1308L	SCN5A_uc003cin.2_Silent_p.L1307L|SCN5A_uc003cil.3_Silent_p.L1308L|SCN5A_uc010hhi.2_Silent_p.L1308L|SCN5A_uc010hhk.2_Silent_p.L1307L|SCN5A_uc011ayr.1_Silent_p.L1254L|SCN5A_uc010hhj.1_Silent_p.L918L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1308	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCAGAGGACGGAGTGCACGCA	0.637000													4	17					0	0	0.00024832	0	0
SCN10A	6336	broad.mit.edu	37	3	38738847	38738847	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:38738847C>T	uc003ciq.2	-	27	5864	c.5864G>A	c.(5863-5865)GGG>GAG	p.G1955E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1955					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCACTAGGGCCCAGGGGCAAT	0.483000													13	79					0	0	0.00244969	0	0
SCN10A	6336	broad.mit.edu	37	3	38755522	38755522	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:38755522G>A	uc003ciq.2	-	21	3731	c.3731C>T	c.(3730-3732)GCT>GTT	p.A1244V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1244	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TTTGATGGGAGCCACTTCAGA	0.502000													14	102					0	0	0.000308642	0	0
XIRP1	165904	broad.mit.edu	37	3	39230536	39230536	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:39230536G>A	uc003cjk.1	-	2	622	c.401C>T	c.(400-402)TCC>TTC	p.S134F	XIRP1_uc003cji.2_Missense_Mutation_p.S134F|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	134	Xin 2.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTTGGCAAAGGAGCCTTCCTC	0.612000													16	59					0	0	0.000566183	0	0
ABHD5	51099	broad.mit.edu	37	3	43753262	43753262	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:43753262C>T	uc003cmx.2	+	4	678	c.568C>T	c.(568-570)CAA>TAA	p.Q190*		NM_016006	NP_057090	Q8WTS1	ABHD5_HUMAN	abhydrolase domain containing 5	190					cell differentiation|fatty acid metabolic process|negative regulation of sequestering of triglyceride|phosphatidic acid biosynthetic process|positive regulation of triglyceride catabolic process|triglyceride catabolic process	cytosol|lipid particle	1-acylglycerol-3-phosphate O-acyltransferase activity|lysophosphatidic acid acyltransferase activity			ovary(1)	1		Renal(3;0.0134)		KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0687)		CCTTGCTGATCAAGACAGACC	0.458000													17	79					0	0	0.00074312	0	0
FYCO1	79443	broad.mit.edu	37	3	46009752	46009752	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:46009752C>T	uc003cpb.3	-	8	1280	c.1074G>A	c.(1072-1074)CTG>CTA	p.L358L	FYCO1_uc011bal.1_Silent_p.L358L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	358					transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TTTTCTTGTCCAGTGAGTCCC	0.592000													29	120					0	0	0.001512	0	0
GLYCTK	132158	broad.mit.edu	37	3	52325015	52325015	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:52325015C>T	uc003ddo.2	+	3	513	c.417C>T	c.(415-417)TTC>TTT	p.F139F	GLYCTK_uc003ddq.2_Silent_p.F139F|GLYCTK_uc003ddm.2_RNA|GLYCTK_uc003ddn.2_RNA|GLYCTK_uc003ddp.1_Silent_p.F139F|GLYCTK_uc003ddr.2_5'Flank	NM_145262	NP_660305	Q8IVS8	GLCTK_HUMAN	glycerate kinase isoform 1	139					protein phosphorylation	Golgi apparatus|mitochondrion	ATP binding|glycerate kinase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;3.56e-05)|Kidney(197;0.00171)|KIRC - Kidney renal clear cell carcinoma(197;0.00194)|OV - Ovarian serous cystadenocarcinoma(275;0.235)		TCCAGGTATTCGAGGGTGCGG	0.627000													9	55					0	0	0.000673444	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54676166	54676166	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:54676166G>A	uc003dhf.2	+	11	1113	c.1065G>A	c.(1063-1065)ACG>ACA	p.T355T	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Silent_p.T261T|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Silent_p.T89T|HESRG_uc003dhj.2_5'Flank	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	355	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TCAACCACACGGGACAAGGAA	0.413000													5	17					0	0	0.00116845	0	0
LRTM1	57408	broad.mit.edu	37	3	54952855	54952855	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:54952855C>T	uc003dhl.2	-	3	803	c.669G>A	c.(667-669)AGG>AGA	p.R223R	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	223	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		CATGAGGGATCCTAAGGAGGT	0.547000													9	20					0	0	0.000673444	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052277	55052277	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:55052277C>T	uc003dhf.2	+	35	2968	c.2920C>T	c.(2920-2922)CCA>TCA	p.P974S	CACNA2D3_uc003dhg.1_Missense_Mutation_p.P880S|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	974	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TACTGAATATCCAGCATTCGT	0.473000													4	20					0	0	0.00116845	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56779477	56779477	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:56779477C>T	uc003dig.2	-	7	795	c.626G>A	c.(625-627)AGC>AAC	p.S209N	ARHGEF3_uc011bew.1_Missense_Mutation_p.S209N|ARHGEF3_uc003dih.2_Missense_Mutation_p.S241N|ARHGEF3_uc011bev.1_Missense_Mutation_p.S180N|ARHGEF3_uc003dif.2_Missense_Mutation_p.S215N|ARHGEF3_uc010hmy.1_Missense_Mutation_p.S7N|ARHGEF3_uc003dii.2_Missense_Mutation_p.S209N	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	209	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		ATCATAGGAGCTGAGGCAAGG	0.458000													20	111					0	0	0.00152264	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527078	64527079	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:64527078_64527079CC>AA	uc003dmg.2	-	35	5336_5337	c.5304_5305GG>TT	c.(5302-5307)GCGGGG>GCTTGG	p.G1769W	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G1741W|ADAMTS9_uc011bfp.1_Missense_Mutation_p.G680W	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1769	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		GAGTGCATCCCCGCACAGAATA	0.465000													8	358					0	0	6.4e-05	0	0
MAGI1	9223	broad.mit.edu	37	3	65349223	65349223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:65349223G>A	uc003dmn.2	-	21	3938	c.3412C>T	c.(3412-3414)CGA>TGA	p.R1138*	MAGI1_uc003dmm.2_Nonsense_Mutation_p.R1166*|MAGI1_uc003dmo.2_Nonsense_Mutation_p.R1167*|MAGI1_uc003dmp.2_Nonsense_Mutation_p.R1071*	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1167	PDZ 6.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CGGCCTCCTCGAAGGCTAAAG	0.463000													21	102					0	0	0.00152264	0	0
OR5H1	26341	broad.mit.edu	37	3	97851905	97851905	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:97851905C>T	uc011bgt.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R122H(1)		ovary(1)|breast(1)	2						GGCATATGATCGCTATGTAGC	0.393000													6	58					0	0	0.00198382	0	0
CCDC54	84692	broad.mit.edu	37	3	107096457	107096457	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:107096457G>A	uc003dwi.1	+	1	270	c.23G>A	c.(22-24)AGG>AAG	p.R8K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	8											0						CACACCAAAAGGGTAAAAGCT	0.398000													11	72					0	0	0.00185496	0	0
DZIP3	9666	broad.mit.edu	37	3	108406916	108406916	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:108406916C>T	uc003dxd.2	+	29	3665	c.3243C>T	c.(3241-3243)TCC>TCT	p.S1081S	DZIP3_uc003dxf.1_Silent_p.S1081S|DZIP3_uc011bhm.1_Silent_p.S532S	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	1081					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GCAAGATTTCCCAGTTTATTG	0.348000													5	48					0	0	0.000602214	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111795743	111795743	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:111795743G>A	uc010hqb.2	+	14	1768	c.1598G>A	c.(1597-1599)TGG>TAG	p.W533*	TMPRSS7_uc011bhr.1_Nonsense_Mutation_p.W388*	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	659	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						CCCACACCATGGACTGCACAC	0.438000													27	140					0	0	0.000720815	0	0
SLC9A10	285335	broad.mit.edu	37	3	111901020	111901020	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:111901020G>A	uc003dyu.2	-	21	2831	c.2609C>T	c.(2608-2610)CCG>CTG	p.P870L	SLC9A10_uc011bhu.1_Missense_Mutation_p.P133L|SLC9A10_uc010hqc.2_Missense_Mutation_p.P822L	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	870	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATCTAGCCACGGAATATGATA	0.219000													12	75					0	0	0.00136819	0	0
DRD3	1814	broad.mit.edu	37	3	113890585	113890585	+	Missense_Mutation	SNP	C	G	G	rs76256558		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:113890585C>G	uc003ebd.2	-	3	678	c.255G>C	c.(253-255)TGG>TGC	p.W85C	DRD3_uc010hqn.1_Missense_Mutation_p.W85C|DRD3_uc003ebb.1_Missense_Mutation_p.W85C|DRD3_uc003ebc.1_Missense_Mutation_p.W85C	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	85	Helical; Name=2.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	GGTATACCACCCAGGGCATCA	0.547000													13	96					0	0	0.000308642	0	0
ZNF80	7634	broad.mit.edu	37	3	113955853	113955853	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:113955853G>A	uc010hqo.2	-	1	573	c.69C>T	c.(67-69)GTC>GTT	p.V23V	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	23						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				CTCCTGTGGAGACCTGCTCCT	0.532000													18	89					0	0	0.00229938	0	0
C3orf30	152405	broad.mit.edu	37	3	118865782	118865782	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:118865782C>T	uc003ecb.1	+	1	786	c.746C>T	c.(745-747)CCA>CTA	p.P249L	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Missense_Mutation_p.P249L	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	249										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		TCGTCCGTACCATCTGACCAA	0.483000													12	83					0	0	0.000978159	0	0
C3orf15	89876	broad.mit.edu	37	3	119462963	119462963	+	Missense_Mutation	SNP	C	T	T	rs139653997		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:119462963C>T	uc003ede.3	+	14	1899	c.1822C>T	c.(1822-1824)CGG>TGG	p.R608W	C3orf15_uc010hqz.2_Missense_Mutation_p.R546W|C3orf15_uc011bjd.1_Missense_Mutation_p.R482W|C3orf15_uc011bje.1_Missense_Mutation_p.R588W	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	444						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GCGCCAGCGGCGGGTACGAGA	0.587000													8	94					0	0	0.000274275	0	0
STXBP5L	9515	broad.mit.edu	37	3	120976026	120976026	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:120976026C>T	uc003eec.3	+	17	1818	c.1678C>T	c.(1678-1680)CAG>TAG	p.Q560*	STXBP5L_uc011bji.1_Nonsense_Mutation_p.Q560*	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	560	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GGTACGACTTCAGTATGATGT	0.333000													6	63					0	0	0.00116845	0	0
CASR	846	broad.mit.edu	37	3	121981094	121981094	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:121981094C>T	uc003eev.3	+	4	1584	c.1212C>T	c.(1210-1212)GTC>GTT	p.V404V	CASR_uc003eew.3_Silent_p.V404V	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	404	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCAGCAGTGTCGAGACCCCTT	0.483000													9	69					0	0	0.000442599	0	0
PARP14	54625	broad.mit.edu	37	3	122437232	122437232	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:122437232C>T	uc003efq.3	+	14	4293	c.4234C>T	c.(4234-4236)CCC>TCC	p.P1412S	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.P1129S|PARP14_uc003efs.1_Missense_Mutation_p.P1129S	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1412					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		AAAGCAATCTCCCCAAAAAAA	0.353000													13	71					0	0	0.00185496	0	0
RHO	6010	broad.mit.edu	37	3	129252474	129252474	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:129252474C>T	uc003emt.2	+	5	1055	c.960C>T	c.(958-960)ACC>ACT	p.T320T		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	320	Cytoplasmic.				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	TGCTCACCACCATCTGCTGCG	0.617000													22	109					0	0	0.00229938	0	0
COL6A6	131873	broad.mit.edu	37	3	130284112	130284112	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:130284112C>T	uc010htl.2	+	3	967	c.936C>T	c.(934-936)ATC>ATT	p.I312I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	312	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GAGCTGCCATCAAAAAGCTCA	0.498000													18	90					0	0	0.000958276	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133698444	133698444	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:133698444C>A	uc003eqa.3	-	2	389	c.115G>T	c.(115-117)GGC>TGC	p.G39C	SLCO2A1_uc003eqb.3_Missense_Mutation_p.G39C|SLCO2A1_uc011blv.1_Missense_Mutation_p.G39C|SLCO2A1_uc010htw.1_Translation_Start_Site	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	39	Helical; Name=1; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						TGCAGGAGGCCTTGGCAGAGC	0.607000													6	48					0.00116845	0.00380336	0.00116845	1	0
ZBTB38	253461	broad.mit.edu	37	3	141164020	141164020	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:141164020G>A	uc003etw.2	+	8	3772	c.2790G>A	c.(2788-2790)CAG>CAA	p.Q930Q	ZBTB38_uc010hun.2_Silent_p.Q927Q|ZBTB38_uc010huo.2_Silent_p.Q930Q|ZBTB38_uc003ety.2_Silent_p.Q930Q|ZBTB38_uc010hup.2_Silent_p.Q931Q	NM_001080412	NP_001073881	Q8NAP3	ZBT38_HUMAN	zinc finger and BTB domain containing 38	930					positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AATCCAGACAGTTGAAAAAAA	0.483000													5	42					0	0	0.000602214	0	0
GRK7	131890	broad.mit.edu	37	3	141499546	141499546	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:141499546C>T	uc011bnd.1	+	2	1027	c.943C>T	c.(943-945)CGG>TGG	p.R315W		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	315	Protein kinase.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						CATCGTCTATCGGGACATGAA	0.587000													10	39					0	0	0.000673444	0	0
PLS1	5357	broad.mit.edu	37	3	142430824	142430824	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:142430824G>A	uc010huv.2	+	16	2024	c.1865G>A	c.(1864-1866)GGA>GAA	p.G622E	PLS1_uc003euz.2_Missense_Mutation_p.G622E|PLS1_uc003eva.2_Missense_Mutation_p.G622E	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	622	CH 4.|Actin-binding 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TGCTTAATGGGAAAAGGACTG	0.388000													18	85					0	0	0.00121646	0	0
DHX36	170506	broad.mit.edu	37	3	154032852	154032852	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:154032852G>A	uc003ezy.3	-	3	667	c.586C>T	c.(586-588)CGG>TGG	p.R196W	DHX36_uc010hvq.2_Missense_Mutation_p.R196W|DHX36_uc003ezz.3_Missense_Mutation_p.R196W	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	196						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding	p.R196W(1)		skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			TCAATATACCGAAGGTCATTT	0.299000													6	25					0	0	0.00116845	0	0
PLCH1	23007	broad.mit.edu	37	3	155311961	155311961	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:155311961G>A	uc011bok.1	-	3	480	c.203C>T	c.(202-204)TCC>TTC	p.S68F	PLCH1_uc011boj.1_Missense_Mutation_p.S68F|PLCH1_uc011bol.1_Missense_Mutation_p.S50F	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	68	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TTTGTAAATGGAATCAATAAG	0.423000													8	56					0	0	0.000442599	0	0
SLC33A1	9197	broad.mit.edu	37	3	155551305	155551305	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:155551305G>A	uc003fan.3	-	4	1599	c.1218C>T	c.(1216-1218)TTC>TTT	p.F406F	SLC33A1_uc003fao.1_Silent_p.F406F|SLC33A1_uc003fap.1_5'Flank	NM_004733	NP_004724	O00400	ACATN_HUMAN	acetyl-coenzyme A transporter	406	Helical; (Potential).				cell death|transmembrane transport	endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane|membrane fraction	acetyl-CoA transporter activity			ovary(2)|large_intestine(1)|pancreas(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AATATATAGGGAATCCCCCTT	0.383000													18	71					0	0	0.000566183	0	0
MECOM	2122	broad.mit.edu	37	3	168845645	168845645	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:168845645G>A	uc003ffi.3	-	4	522	c.253C>T	c.(253-255)CCT>TCT	p.P85S	MECOM_uc010hwk.1_Missense_Mutation_p.P108S|MECOM_uc003ffj.3_Missense_Mutation_p.P149S|MECOM_uc011bpi.1_Missense_Mutation_p.P85S|MECOM_uc003ffn.3_Missense_Mutation_p.P85S|MECOM_uc003ffk.2_Missense_Mutation_p.P85S|MECOM_uc003ffl.2_Missense_Mutation_p.P245S|MECOM_uc011bpj.1_Missense_Mutation_p.P273S|MECOM_uc011bpk.1_Missense_Mutation_p.P75S|MECOM_uc010hwn.2_Missense_Mutation_p.P273S|MECOM_uc003ffm.1_Missense_Mutation_p.P149S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	85	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 2.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGCAAATCAGGAAAAACTTGG	0.383000													4	68					0	0	0.00024832	0	0
DGKG	1608	broad.mit.edu	37	3	185993421	185993421	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:185993421G>A	uc003fqa.2	-	10	1362	c.825C>T	c.(823-825)ACC>ACT	p.T275T	DGKG_uc003fqb.2_Silent_p.T275T|DGKG_uc003fqc.2_Silent_p.T275T|DGKG_uc011brx.1_Silent_p.T275T	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	275	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	AGTGCTTCATGGTCCAGGCGT	0.577000													7	48					0	0	0.000274275	0	0
FGF12	2257	broad.mit.edu	37	3	191888273	191888273	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:191888273G>A	uc003fsx.2	-	4	1413	c.587C>T	c.(586-588)TCA>TTA	p.S196L	FGF12_uc003fsy.2_Missense_Mutation_p.S134L	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	196					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TACAAAATGTGATGAGGGCTT	0.438000													12	106					0	0	0.000978159	0	0
IQCG	84223	broad.mit.edu	37	3	197665521	197665521	+	Missense_Mutation	SNP	C	A	A	rs75671851	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr3:197665521C>A	uc003fyo.2	-	4	559	c.413G>T	c.(412-414)CGG>CTG	p.R138L	IQCG_uc003fyn.2_Missense_Mutation_p.R40L|IQCG_uc003fyp.2_Missense_Mutation_p.R138L|IQCG_uc003fyq.3_Missense_Mutation_p.R138L	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	138											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		CACAGCGAACCGGCCTCTGTG	0.423000													7	264					0.00198382	0.00645019	0.00198382	1	0
DRD5	1816	broad.mit.edu	37	4	9784938	9784938	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:9784938G>A	uc003gmb.3	+	1	1681	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	429	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GGACAACGACGAGGAGGAGGG	0.577000													6	60					0	0	0.00116845	0	0
SLC34A2	10568	broad.mit.edu	37	4	25673303	25673303	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:25673303G>A	uc003grr.2	+	9	1089	c.1008G>A	c.(1006-1008)TGG>TGA	p.W336*	SLC34A2_uc003grs.2_Nonsense_Mutation_p.W335*|SLC34A2_uc010iev.2_Nonsense_Mutation_p.W335*	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	336	Extracellular (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TCCAAAACTGGACCATGAAGA	0.498000													31	164					0	0	0.00178596	0	0
LOC344967	344967	broad.mit.edu	37	4	40045554	40045554	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:40045554G>A	uc011byr.1	-	3	596	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NR_027277				RecName: Full=Cytosolic acyl coenzyme A thioester hydrolase-like;          EC=3.1.2.2; AltName: Full=Acyl-CoA thioesterase 7-like;												0						TGGGCCACAGGAAGTGGGTGC	0.612000													4	11					0	0	0.00024832	0	0
CHRNA9	55584	broad.mit.edu	37	4	40356328	40356328	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:40356328C>T	uc003gva.1	+	5	1247	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	411	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GGGTAAGAACCCTCAGGAGGC	0.498000													7	50					0	0	0.00198382	0	0
ATP8A1	10396	broad.mit.edu	37	4	42415007	42415007	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:42415007C>T	uc003gwr.2	-	37	3653	c.3421G>A	c.(3421-3423)GAA>AAA	p.E1141K	ATP8A1_uc003gwq.2_Missense_Mutation_p.E367K|ATP8A1_uc003gws.2_Missense_Mutation_p.E1126K	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1141	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ATTCCATTTTCATCTTGAGAG	0.433000													5	22					0	0	0.000602214	0	0
ATP10D	57205	broad.mit.edu	37	4	47574913	47574913	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:47574913G>A	uc003gxk.1	+	18	3429	c.3265G>A	c.(3265-3267)GTT>ATT	p.V1089I	ATP10D_uc003gxl.1_Missense_Mutation_p.V337I	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1089	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TGACTTTGCCGTTTCTCAGTT	0.438000													47	243					0	0	0.000781405	0	0
ENAM	10117	broad.mit.edu	37	4	71509504	71509504	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:71509504G>A	uc011caw.1	+	9	2642	c.2361G>A	c.(2359-2361)TGG>TGA	p.W787*		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	787					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			GAAATATCTGGGATCAGGCAA	0.473000													6	47					0	0	0.000274275	0	0
ENAM	10117	broad.mit.edu	37	4	71510108	71510108	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:71510108G>A	uc011caw.1	+	9	3246	c.2965G>A	c.(2965-2967)GAT>AAT	p.D989N		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	989					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TCTCAAAAATGATCTTGGAGG	0.408000													14	49					0	0	0.00244969	0	0
SLC4A4	8671	broad.mit.edu	37	4	72412140	72412140	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:72412140C>T	uc003hfy.2	+	19	2633	c.2516C>T	c.(2515-2517)CCG>CTG	p.P839L	SLC4A4_uc010iic.2_Missense_Mutation_p.P839L|SLC4A4_uc010iib.2_Intron|SLC4A4_uc003hfz.2_Missense_Mutation_p.P839L|SLC4A4_uc003hgc.3_Missense_Mutation_p.P795L|SLC4A4_uc010iid.2_Missense_Mutation_p.P43L	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	839	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			ATGGCTCTTCCGTGGTATGTA	0.463000													3	9					0	0	0.00024832	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73148985	73148985	+	Silent	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:73148985T>G	uc003hgk.1	-	22	3523	c.3486A>C	c.(3484-3486)TCA>TCC	p.S1162S		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1162					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CAGCCATTTGTGAAGCTGAAC	0.502000													21	118					0	0	0.00229938	0	0
C4orf37	285555	broad.mit.edu	37	4	98633937	98633937	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:98633937C>T	uc003htt.1	-	10	1323	c.1233G>A	c.(1231-1233)AGG>AGA	p.R411R		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	411											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		GGCAAGATTTCCTTAAAACAG	0.338000													6	41					0	0	0.00198382	0	0
TACR3	6870	broad.mit.edu	37	4	104510988	104510988	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:104510988C>T	uc003hxe.1	-	5	1392	c.1249G>A	c.(1249-1251)GAT>AAT	p.D417N		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	417	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		GTGTCTGCATCGTTGGGGTCA	0.527000													9	56					0	0	0.000978159	0	0
TET2	54790	broad.mit.edu	37	4	106156493	106156493	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:106156493C>T	uc003hxk.2	+	3	1780	c.1394C>T	c.(1393-1395)CCA>CTA	p.P465L	TET2_uc011cez.1_Missense_Mutation_p.P486L|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.P465L|TET2_uc003hxi.1_Missense_Mutation_p.P465L	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	465					cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		AGTCCTAATCCATCTACACAT	0.453000			Mis N|F		MDS								10	53					0	0	0.000673444	0	0
TET2	54790	broad.mit.edu	37	4	106157278	106157278	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:106157278G>A	uc003hxk.2	+	3	2565	c.2179G>A	c.(2179-2181)GCA>ACA	p.A727T	TET2_uc011cez.1_Missense_Mutation_p.A748T|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.A727T|TET2_uc003hxi.1_Missense_Mutation_p.A727T	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	727	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.A727fs*23(1)		haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TCATAAACAGGCAGCACAAAC	0.408000			Mis N|F		MDS								6	52					0	0	0.000274275	0	0
ANK2	287	broad.mit.edu	37	4	114117612	114117612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:114117612C>T	uc003ibe.3	+	3	375	c.275C>T	c.(274-276)TCT>TTT	p.S92F	ANK2_uc003ibd.3_Missense_Mutation_p.S71F|ANK2_uc003ibf.3_Missense_Mutation_p.S92F|ANK2_uc003ibc.2_Missense_Mutation_p.S68F|ANK2_uc011cgb.1_Missense_Mutation_p.S107F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	92	ANK 2.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TCTGTGGATTCTGCCACTAAG	0.393000													9	32					0	0	0.000442599	0	0
MYOZ2	51778	broad.mit.edu	37	4	120107210	120107210	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:120107210C>T	uc003icp.3	+	6	863	c.650C>T	c.(649-651)CCC>CTC	p.P217L		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	217							protein phosphatase 2B binding				0						CTAACAGATCCCAGGTTTATG	0.398000													11	62					0	0	0.000673444	0	0
FAT4	79633	broad.mit.edu	37	4	126240824	126240824	+	Silent	SNP	T	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:126240824T>G	uc003ifj.3	+	1	3258	c.3258T>G	c.(3256-3258)GTT>GTG	p.V1086V		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1086	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTGTGAATGTTACTGTAATTT	0.383000													21	138					0	0	0.00188189	0	0
PCDH10	57575	broad.mit.edu	37	4	134072200	134072200	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:134072200G>A	uc003iha.2	+	1	1731	c.905G>A	c.(904-906)GGA>GAA	p.G302E	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.G302E	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	302	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GAGCTTTTCGGACTCTCGCCG	0.632000													10	52					0	0	0.000442599	0	0
PCDH18	54510	broad.mit.edu	37	4	138452842	138452842	+	Missense_Mutation	SNP	G	A	A	rs143505708	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:138452842G>A	uc003ihe.3	-	1	788	c.401C>T	c.(400-402)TCT>TTT	p.S134F	PCDH18_uc003ihf.3_Missense_Mutation_p.S127F|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_5'UTR|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	134	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					AAACTGGGGAGAATTGTCATT	0.433000													4	22					0	0	0.00024832	0	0
TRIM2	23321	broad.mit.edu	37	4	154217084	154217084	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:154217084G>A	uc003ing.2	+	6	1526	c.1325G>A	c.(1324-1326)GGG>GAG	p.G442E	TRIM2_uc003inh.2_Missense_Mutation_p.G469E	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	442						cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		AAGTCCCCGGGGAGCGGCCAC	0.537000													9	37					0	0	0.000442599	0	0
DCHS2	54798	broad.mit.edu	37	4	155156463	155156463	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:155156463G>A	uc003inw.2	-	25	7976	c.7976C>T	c.(7975-7977)CCC>CTC	p.P2659L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2659					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CTTTCTGTAGGGATGCTCATT	0.512000													3	20					0	0	0.00024832	0	0
FGA	2243	broad.mit.edu	37	4	155506702	155506702	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:155506702G>A	uc003iod.1	-	5	1937	c.1879C>T	c.(1879-1881)CGC>TGC	p.R627C	FGA_uc003ioe.1_Missense_Mutation_p.R627C|FGA_uc003iof.1_3'UTR	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	627	By similarity.|Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	ctgaCAGGGCGAGATTTAGCA	0.259000													7	42					0	0	0.000157383	0	0
RXFP1	59350	broad.mit.edu	37	4	159526268	159526268	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:159526268G>A	uc003ipz.2	+	5	523	c.441G>A	c.(439-441)AAG>AAA	p.K147K	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Silent_p.K66K|RXFP1_uc010iqo.2_Silent_p.K147K|RXFP1_uc011cjb.1_Silent_p.K93K|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Silent_p.K66K|RXFP1_uc011cjd.1_Silent_p.K66K|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Silent_p.K174K|RXFP1_uc010iqm.2_Silent_p.K114K|RXFP1_uc011cjf.1_Silent_p.K17K|RXFP1_uc010iqn.2_Silent_p.K93K	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	147	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		ATTGCTTCAAGAATTATCATG	0.303000													8	31					0	0	0.000274275	0	0
TLL1	7092	broad.mit.edu	37	4	166929121	166929121	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:166929121G>A	uc003irh.1	+	7	1485	c.838G>A	c.(838-840)GAG>AAG	p.E280K	TLL1_uc011cjn.1_Missense_Mutation_p.E280K|TLL1_uc011cjo.1_Missense_Mutation_p.E104K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	280	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCTGAAGATGGAGCCTGGAGA	0.413000													3	13					0	0	6.4e-05	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656149	167656149	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:167656149C>T	uc003iri.1	-	12	1375	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	SPOCK3_uc011cjp.1_Missense_Mutation_p.E369K|SPOCK3_uc011cjq.1_Missense_Mutation_p.E421K|SPOCK3_uc011cjr.1_Missense_Mutation_p.E292K|SPOCK3_uc003irj.1_Missense_Mutation_p.E409K|SPOCK3_uc011cjs.1_Missense_Mutation_p.E361K|SPOCK3_uc011cjt.1_Missense_Mutation_p.E320K|SPOCK3_uc011cju.1_Missense_Mutation_p.E305K|SPOCK3_uc011cjv.1_Missense_Mutation_p.E314K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	412	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		atttcatcttcatcattcata	0.060000													4	19					0	0	0.00024832	0	0
SPOCK3	50859	broad.mit.edu	37	4	167663152	167663152	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:167663152G>A	uc003iri.1	-	10	1140	c.999C>T	c.(997-999)CTC>CTT	p.L333L	SPOCK3_uc011cjp.1_Silent_p.L290L|SPOCK3_uc011cjq.1_Silent_p.L342L|SPOCK3_uc011cjr.1_Silent_p.L213L|SPOCK3_uc003irj.1_Silent_p.L330L|SPOCK3_uc011cjs.1_Silent_p.L282L|SPOCK3_uc011cjt.1_Silent_p.L241L|SPOCK3_uc011cju.1_Silent_p.L226L|SPOCK3_uc011cjv.1_Silent_p.L235L	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	333	Thyroglobulin type-1.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		ACTCACCTAGGAGCTTCTTTA	0.378000													7	79					0	0	0.000442599	0	0
VEGFC	7424	broad.mit.edu	37	4	177605173	177605173	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:177605173C>T	uc003ius.1	-	7	1597	c.1167G>A	c.(1165-1167)ACG>ACA	p.T389T		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	389					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		TCTGGCGGTTCGTACATGGCC	0.418000													9	51					0	0	0.000274275	0	0
ODZ3	55714	broad.mit.edu	37	4	183600827	183600827	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:183600827C>T	uc003ivd.1	+	7	1372	c.1335C>T	c.(1333-1335)TTC>TTT	p.F445F	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	445	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGTATGACTTCGTGGAGCTCC	0.532000													11	74					0	0	0.000978159	0	0
ACSL1	2180	broad.mit.edu	37	4	185697691	185697691	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:185697691C>T	uc003iww.2	-	7	997	c.703G>A	c.(703-705)GTG>ATG	p.V235M	ACSL1_uc011ckm.1_Missense_Mutation_p.V64M|ACSL1_uc003iwt.1_Missense_Mutation_p.V235M|ACSL1_uc003iwu.1_Missense_Mutation_p.V235M|ACSL1_uc011ckn.1_Missense_Mutation_p.V201M|ACSL1_uc003iwv.1_Missense_Mutation_p.V235M|ACSL1_uc010ise.1_5'Flank	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	235	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CCTCGTTCCACCAGTTCACTG	0.522000													14	100					0	0	0.000308642	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455423	187455423	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:187455423G>A	uc003izd.1	-	2	491	c.473C>T	c.(472-474)GCC>GTC	p.A158V		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	158	Helical; Name=4; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GGGCAGGACGGCCGCCAGCGT	0.602000													7	75					0	0	0.000157383	0	0
TRIML2	205860	broad.mit.edu	37	4	189012615	189012615	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:189012615G>A	uc003izl.2	-	7	1112	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F	TRIML2_uc003izj.1_Missense_Mutation_p.S187F|TRIML2_uc003izk.1_Missense_Mutation_p.S167F|TRIML2_uc011cle.1_Missense_Mutation_p.S434F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	359	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GATACAGAGGGAAAACACAGG	0.473000													18	103					0	0	0.000566183	0	0
FAM173B	134145	broad.mit.edu	37	5	10239295	10239295	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:10239295G>A	uc003jeo.2	-	2	219	c.190C>T	c.(190-192)CGA>TGA	p.R64*	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Nonsense_Mutation_p.R64*	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	64						integral to membrane				kidney(1)|central_nervous_system(1)	2						CAGACTTTTCGAAGGGCTGGC	0.507000													18	93					0	0	0.00278032	0	0
DNAH5	1767	broad.mit.edu	37	5	13830199	13830199	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:13830199G>A	uc003jfd.2	-	37	6227	c.6185C>T	c.(6184-6186)TCT>TTT	p.S2062F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2062	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAGATAAAAGACTTTTTGTG	0.383000									Kartagener_syndrome				6	38					0	0	0.000157383	0	0
DNAH5	1767	broad.mit.edu	37	5	13850769	13850769	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:13850769G>A	uc003jfd.2	-	31	5148	c.5106C>T	c.(5104-5106)TCC>TCT	p.S1702S		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1702	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCCAGTAAGGGATTTCTGGC	0.463000									Kartagener_syndrome				5	36					0	0	0.00116845	0	0
PRDM9	56979	broad.mit.edu	37	5	23527651	23527651	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:23527651C>T	uc003jgo.2	+	11	2636	c.2454C>T	c.(2452-2454)CAC>CAT	p.H818H		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	818	C2H2-type 12.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						ATAAGTCACACCTCCTCAGAC	0.552000										HNSCC(3;0.000094)			8	90					0	0	0.00185496	0	0
CDH10	1008	broad.mit.edu	37	5	24511442	24511442	+	Silent	SNP	C	T	T	rs141628395		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:24511442C>T	uc003jgr.1	-	6	1328	c.996G>A	c.(994-996)GTG>GTA	p.V332V	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	332	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GCACCTTTTTCACAGTGATGA	0.403000										HNSCC(23;0.051)			12	118					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	5	33162403	33162403	+	RNA	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:33162403C>T	uc003jhx.2	+	1		c.138C>T								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AAGATTGGCCCCCGCCGCATC	0.582000													3	19					0	0	6.4e-05	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33637760	33637760	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:33637760G>A	uc003jia.1	-	12	1973	c.1810C>T	c.(1810-1812)CGG>TGG	p.R604W	ADAMTS12_uc010iuq.1_Missense_Mutation_p.R604W	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	604	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TGCATCTGCCGAAATGTTGGT	0.468000										HNSCC(64;0.19)			6	52					0	0	0.00116845	0	0
RXFP3	51289	broad.mit.edu	37	5	33937426	33937426	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:33937426G>A	uc003jic.1	+	1	938	c.581G>A	c.(580-582)CGA>CAA	p.R194Q		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	194	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						CACCGGACCCGAGGACACGGC	0.657000													8	50					0	0	0.000274275	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049314	36049314	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:36049314C>T	uc003jjz.1	-	4	613	c.520G>A	c.(520-522)GAA>AAA	p.E174K	UGT3A2_uc011cos.1_Missense_Mutation_p.E140K|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	174	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCCCAAATTCCAAAGAGCCG	0.448000													4	37					0	0	0.00024832	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41058176	41058176	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:41058176G>A	uc003jmj.3	-	7	1235	c.745C>T	c.(745-747)CAT>TAT	p.H249Y	HEATR7B2_uc003jmi.3_5'UTR	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	249	HEAT 2.						binding			ovary(6)|central_nervous_system(2)	8						TGAGTGACATGGAAATCAATC	0.522000													13	38					0	0	0.000566183	0	0
MGC42105	167359	broad.mit.edu	37	5	43277242	43277242	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:43277242G>A	uc003jno.2	+	3	1257	c.376G>A	c.(376-378)GAA>AAA	p.E126K		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	126	Protein kinase.						ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						CTCCAGCATGGAAAAGCTGCA	0.498000													9	54					0	0	0.000274275	0	0
MGC42105	167359	broad.mit.edu	37	5	43280111	43280111	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:43280111G>A	uc003jno.2	+	4	1472	c.591G>A	c.(589-591)CTG>CTA	p.L197L		NM_153361	NP_699192	Q8IY84	NIM1_HUMAN	serine/threonine-protein kinase NIM1	197	Protein kinase.						ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|stomach(1)|large_intestine(1)|breast(1)	9						ATAGAGATCTGAAAGCAGAAA	0.333000													11	47					0	0	0.000978159	0	0
HCN1	348980	broad.mit.edu	37	5	45262291	45262291	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:45262291G>A	uc003jok.2	-	8	2430	c.2405C>T	c.(2404-2406)TCC>TTC	p.S802F		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	802	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						ATGAGGTCTGGAAATCAGAGT	0.657000													9	43					0	0	0.000274275	0	0
ISCA1P1	389293	broad.mit.edu	37	5	62072818	62072818	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:62072818C>T	uc003jtf.2	-	1	353	c.273G>A	c.(271-273)CAG>CAA	p.Q91Q		NM_001080540	NP_001074009			iron-sulfur cluster assembly 1 homolog (S.												0						AAAGTGTTAGCTGTGCTTTCT	0.368000													25	165					0	0	0.00178596	0	0
POLK	51426	broad.mit.edu	37	5	74892072	74892072	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:74892072T>C	uc003kdw.2	+	13	1650	c.1554T>C	c.(1552-1554)AAT>AAC	p.N518N	POLK_uc003kdx.2_RNA|POLK_uc003kdy.2_RNA|POLK_uc010izq.2_Silent_p.N320N|POLK_uc003kec.2_Silent_p.N428N|POLK_uc010izr.2_RNA|POLK_uc010izs.2_RNA|POLK_uc003ked.2_Intron|POLK_uc003kee.2_Intron|POLK_uc003kef.2_Silent_p.N428N	NM_016218	NP_057302	Q9UBT6	POLK_HUMAN	DNA-directed DNA polymerase kappa	518					DNA replication|nucleotide-excision repair, DNA gap filling	nucleus	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			ovary(2)|kidney(2)	4		all_lung(232;0.0131)|Lung NSC(167;0.0282)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;2.9e-54)|all cancers(79;1.27e-42)		GTTTTCCCAATGAAGAGGACA	0.378000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	20					0	0	6.4e-05	0	0
CRHBP	1393	broad.mit.edu	37	5	76259231	76259231	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:76259231G>A	uc003ker.2	+	6	1037	c.757G>A	c.(757-759)GAC>AAC	p.D253N		NM_001882	NP_001873	P24387	CRHBP_HUMAN	corticotropin releasing hormone binding protein	253					female pregnancy|learning or memory|signal transduction	soluble fraction					0		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-51)|Epithelial(54;8.79e-46)|all cancers(79;2.49e-41)		AACTGGATTGGACCCTTCCAA	0.453000													68	387					0	0	0.000781405	0	0
VCAN	1462	broad.mit.edu	37	5	82815771	82815771	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:82815771G>A	uc003kii.3	+	7	2002	c.1646G>A	c.(1645-1647)GGA>GAA	p.G549E	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.G549E|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	549	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GGTCACTATGGATTCACCTTG	0.413000													9	88					0	0	0.000442599	0	0
GPR98	84059	broad.mit.edu	37	5	89925145	89925145	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:89925145G>A	uc003kju.2	+	9	1724	c.1628G>A	c.(1627-1629)AGA>AAA	p.R543K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	543	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGTTTTACAAGACTAGGAGGG	0.408000													5	22					0	0	0.000602214	0	0
GPR98	84059	broad.mit.edu	37	5	89938477	89938477	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:89938477G>A	uc003kju.2	+	12	2361	c.2265G>A	c.(2263-2265)CTG>CTA	p.L755L	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	755	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACCAAGTGCTGAAATCTGGAT	0.413000													11	81					0	0	0.00185496	0	0
TSSK1B	83942	broad.mit.edu	37	5	112770048	112770048	+	Silent	SNP	C	T	T	rs139038807		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:112770048C>T	uc003kqm.2	-	1	681	c.489G>A	c.(487-489)CGG>CGA	p.R163R	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	163	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.R163R(2)		ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		CACTGTCATCCCGCAGGCAGC	0.572000													7	34					0	0	0.000157383	0	0
CEP120	153241	broad.mit.edu	37	5	122734918	122734918	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:122734918C>T	uc003ktk.2	-	6	606	c.524G>A	c.(523-525)GGA>GAA	p.G175E	CEP120_uc011cwq.1_5'UTR|CEP120_uc010jcz.1_Missense_Mutation_p.G149E	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	175						centrosome				ovary(1)	1						ATGGTAGCCTCCCTCTTCATT	0.453000													9	65					0	0	0.000274275	0	0
FBN2	2201	broad.mit.edu	37	5	127626458	127626458	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:127626458C>T	uc003kuu.2	-	50	6850	c.6411G>A	c.(6409-6411)GGG>GGA	p.G2137G		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2137	TB 8.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CACAGGGGTCCCCCCAGCCCT	0.463000													9	79					0	0	0.000978159	0	0
FBN2	2201	broad.mit.edu	37	5	127627235	127627235	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:127627235C>T	uc003kuu.2	-	49	6717	c.6278G>A	c.(6277-6279)GGA>GAA	p.G2093E		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2093	EGF-like 35; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GCATCTCCGTCCATTATCAGA	0.438000													6	80					0	0	0.00198382	0	0
SEC24A	10802	broad.mit.edu	37	5	134059307	134059307	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:134059307C>T	uc003kzs.2	+	22	3402	c.3114C>T	c.(3112-3114)TTC>TTT	p.F1038F	SEC24A_uc011cxu.1_Silent_p.F802F	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	1038					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TAATAGCTTTCATCTCTTGGC	0.338000													16	97					0	0	0.00121646	0	0
IK	3550	broad.mit.edu	37	5	140032629	140032629	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140032629C>T	uc003lgq.2	+	5	414	c.304C>T	c.(304-306)CGT>TGT	p.R102C	IK_uc011czk.1_Missense_Mutation_p.R102C	NM_006083	NP_006074	Q13123	RED_HUMAN	RED protein	102					cell-cell signaling|immune response	extracellular space|nucleus|soluble fraction				large_intestine(1)	1		all_hematologic(541;4.8e-07)|all_lung(500;0.000434)|Lung NSC(810;0.00161)|Breast(839;0.128)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACCGGGATCGTGCCAAGGA	0.483000													7	59					0	0	0.00198382	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203153	140203153	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140203153C>T	uc003lhl.2	+	1	1793	c.1793C>T	c.(1792-1794)CCT>CTT	p.P598L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.P598L|PCDHA5_uc003lhj.1_Missense_Mutation_p.P598L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	598	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGTGGACCCTGATTCGGGC	0.682000													8	67					0	0	0.000442599	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214953	140214953	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140214953C>T	uc003lhq.2	+	1	985	c.985C>T	c.(985-987)CCC>TCC	p.P329S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.P329S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	329	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGCTTCCCACCCCTGGCTGG	0.483000													11	90					0	0	0.00136819	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215068	140215068	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140215068C>T	uc003lhq.2	+	1	1100	c.1100C>T	c.(1099-1101)ACC>ATC	p.T367I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.T367I	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	367	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAACCAGGTACCGTCATCACA	0.512000													29	137					0	0	0.00106085	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221567	140221567	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140221567G>A	uc003lhs.2	+	1	661	c.661G>A	c.(661-663)GAG>AAG	p.E221K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.E221K	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	221	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCAAACCTGAGCTCACAGG	0.468000													10	47					0	0	0.000673444	0	0
PCDHA9	9752	broad.mit.edu	37	5	140229995	140229995	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140229995G>A	uc003lhu.2	+	1	2639	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Missense_Mutation_p.E639K	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCCTGGACGAAACGGACGC	0.667000													10	54					0	0	0.000442599	0	0
PCDHA11	56138	broad.mit.edu	37	5	140248760	140248760	+	Missense_Mutation	SNP	G	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140248760G>T	uc003lia.2	+	1	930	c.72G>T	c.(70-72)TGG>TGT	p.W24C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.W24C	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	24					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGAATTCTGGGAGGTGGGGA	0.602000													20	108					2.39556e-15	7.90427e-15	0.00278032	1	0
PCDHA11	56138	broad.mit.edu	37	5	140248762	140248762	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140248762A>T	uc003lia.2	+	1	932	c.74A>T	c.(73-75)GAG>GTG	p.E25V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.E25V	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	25					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAATTCTGGGAGGTGGGGAGC	0.597000													19	112					0	0	0.00188189	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250261	140250261	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140250261G>A	uc003lia.2	+	1	2431	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.E525K	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	525	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGGACCACGAGGAGCTGGA	0.682000													27	145					0	0	0.00127121	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516369	140516369	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140516369C>T	uc003liq.2	+	1	1570	c.1353C>T	c.(1351-1353)ACC>ACT	p.T451T		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	451	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCGCCTTCACCCAAACCTCCT	0.602000													20	120					0	0	0.00188189	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552966	140552966	+	Missense_Mutation	SNP	G	A	A	rs146757937		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140552966G>A	uc003lit.2	+	1	724	c.550G>A	c.(550-552)GAT>AAT	p.D184N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	184	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAATGTCCATGATAGCGGGGA	0.478000													9	46					0	0	0.000274275	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590309	140590309	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140590309G>A	uc003liz.2	+	1	2019	c.1830G>A	c.(1828-1830)ACG>ACA	p.T610T	PCDHB12_uc011dak.1_Silent_p.T273T	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	610	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCAAGGCCACGGAGCCCGGGC	0.711000													11	162					0	0	0.00136819	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626208	140626208	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140626208C>G	uc003lje.2	+	1	1062	c.1062C>G	c.(1060-1062)AGC>AGG	p.S354R		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	354	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CACTTACCAGCCCTATTCCCG	0.453000													20	80					0	0	0.000958276	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626250	140626250	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140626250T>C	uc003lje.2	+	1	1104	c.1104T>C	c.(1102-1104)TTT>TTC	p.F368F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	368	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGCCCTGTTTAGGATTAGAG	0.408000													15	65					0	0	0.000308642	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731844	140731844	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140731844G>A	uc003ljo.1	+	1	2017	c.2017G>A	c.(2017-2019)GAC>AAC	p.D673N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.D673N|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	673	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACCTCAGCGACCGCCCTGA	0.607000													26	150					0	0	0.000720815	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140741003	140741003	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140741003C>T	uc003ljs.1	+	1	1301	c.1301C>T	c.(1300-1302)TCC>TTC	p.S434F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.S434F|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	434	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCTCTCCTCCAGCATAATT	0.537000													12	101					0	0	0.00244969	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754309	140754309	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140754309C>T	uc003ljy.1	+	1	659	c.659C>T	c.(658-660)CCT>CTT	p.P220L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P220L	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	220	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGGCGACCCTGTCCGCTCA	0.557000													3	13					0	0	6.4e-05	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794564	140794564	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:140794564C>T	uc003lkl.1	+	1	1822	c.1822C>T	c.(1822-1824)CTG>TTG	p.L608L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.L608L|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAACGCCTGGCTGTCCTACCG	0.711000													19	73					0	0	0.00152264	0	0
NR3C1	2908	broad.mit.edu	37	5	142689710	142689710	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:142689710G>A	uc003lmz.2	-	4	1912	c.1420C>T	c.(1420-1422)CCA>TCA	p.P474S	NR3C1_uc003lmy.2_Missense_Mutation_p.P475S|NR3C1_uc003lna.2_Missense_Mutation_p.P474S|NR3C1_uc003lnb.2_Missense_Mutation_p.P474S|NR3C1_uc011dbk.1_Missense_Mutation_p.P77S|NR3C1_uc003lnc.2_Missense_Mutation_p.P474S|NR3C1_uc003lnd.2_Missense_Mutation_p.P474S|NR3C1_uc003lne.2_Missense_Mutation_p.P474S|NR3C1_uc003lnf.2_Missense_Mutation_p.P475S	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	474	NR C4-type.|Nuclear receptor.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	CGGCATGCTGGGCAGTTTTTT	0.358000													9	47					0	0	0.000673444	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393608	145393608	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:145393608C>T	uc003lnt.2	+	5	1281	c.1043C>T	c.(1042-1044)TCC>TTC	p.S348F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S348F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	348							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GACGTTCCTTCCAGCTGTGTG	0.527000													7	61					0	0	0.000157383	0	0
C5orf46	389336	broad.mit.edu	37	5	147281223	147281223	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:147281223C>T	uc010jgp.2	-	2	221	c.184G>A	c.(184-186)GAG>AAG	p.E62K	C5orf46_uc003lou.2_Missense_Mutation_p.E62K|C5orf46_uc003lov.3_Missense_Mutation_p.E62K	NM_206966	NP_996849	Q6UWT4	CE046_HUMAN	hypothetical protein LOC389336 precursor	62						extracellular region					0						AGGATGAACTCGACTGCATTC	0.423000													5	45					0	0	0.000602214	0	0
C5orf40	408263	broad.mit.edu	37	5	156770028	156770028	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:156770028C>T	uc003lwu.2	-	2	705	c.517G>A	c.(517-519)GAA>AAA	p.E173K	CYFIP2_uc003lwq.2_Intron|CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Intron|CYFIP2_uc003lws.2_Intron|CYFIP2_uc003lwt.2_Intron|CYFIP2_uc011ddp.1_Intron	NM_001001343	NP_001001343	Q8TBE3	FNDC9_HUMAN	hypothetical protein LOC408263	173						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGCAGGTCTTCCTCCCTCTGA	0.617000											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	114					0	0	0.00185496	0	0
SH3PXD2B	285590	broad.mit.edu	37	5	171766297	171766297	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:171766297G>A	uc003mbr.2	-	13	1983	c.1812C>T	c.(1810-1812)GCC>GCT	p.A604A		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	604					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCACTTCCTTGGCCAAGACCT	0.557000													14	83					0	0	0.00185496	0	0
HMP19	51617	broad.mit.edu	37	5	173491276	173491276	+	Missense_Mutation	SNP	G	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:173491276G>C	uc003mcx.2	+	3	316	c.171G>C	c.(169-171)AAG>AAC	p.K57N		NM_015980	NP_057064	Q9Y328	NSG2_HUMAN	HMP19 protein	57	Cytoplasmic (Potential).				dopamine receptor signaling pathway	cytoplasmic vesicle membrane|Golgi cisterna membrane|integral to membrane|multivesicular body membrane	dopamine receptor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00925)|all_lung(126;0.0148)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CGGAACAGAAGAACAAAGGGA	0.448000													8	64					0	0	0.000157383	0	0
FGFR4	2264	broad.mit.edu	37	5	176519691	176519691	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr5:176519691G>A	uc003mfl.2	+	8	1130	c.963G>A	c.(961-963)CGG>CGA	p.R321R	FGFR4_uc003mfm.2_Silent_p.R321R|FGFR4_uc011dfu.1_Silent_p.R321R|FGFR4_uc011dfw.1_Silent_p.R321R|FGFR4_uc003mfo.2_Silent_p.R321R	NM_002011	NP_002002	P22455	FGFR4_HUMAN	fibroblast growth factor receptor 4 isoform 1	321	Extracellular (Potential).|Ig-like C2-type 3.				insulin receptor signaling pathway|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity			lung(11)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|prostate(1)	16	all_cancers(89;5.93e-05)|Renal(175;0.000269)|Lung NSC(126;0.0088)|all_lung(126;0.0142)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Palifermin(DB00039)	TGTACCTGCGGAACGTGTCAG	0.642000										TSP Lung(9;0.080)			11	44					0	0	0.000978159	0	0
C6orf146	222826	broad.mit.edu	37	6	4069980	4069980	+	Silent	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:4069980A>G	uc003mvx.2	-	7	817	c.477T>C	c.(475-477)TTT>TTC	p.F159F	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Silent_p.F96F	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	159										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				TTCTGTTCTTAAAAAAGTCTC	0.388000													3	54					0	0	6.4e-05	0	0
DSP	1832	broad.mit.edu	37	6	7571748	7571748	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:7571748T>C	uc003mxp.1	+	14	2113	c.1834T>C	c.(1834-1836)TTC>CTC	p.F612L	DSP_uc003mxq.1_Missense_Mutation_p.F612L	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	612	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACAGTCTCAGTTCACCGATGC	0.488000													25	95					0	0	0.000878237	0	0
BTN2A3	54718	broad.mit.edu	37	6	26431762	26431762	+	Silent	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:26431762T>C	uc011dkl.1	+	6	1710	c.1680T>C	c.(1678-1680)AGT>AGC	p.S560S	BTN2A3_uc011dkm.1_RNA					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						GCTTTAGTAGTTCCTTTGGTT	0.502000													16	133					0	0	0.00074312	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27783082	27783082	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:27783082C>T	uc003njo.2	+	1	261	c.261C>T	c.(259-261)CGC>CGT	p.R87R	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	87					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						ACAACAAGCGCTCGACCATCA	0.592000													7	46					0	0	0.000157383	0	0
ZNF323	64288	broad.mit.edu	37	6	28297436	28297436	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:28297436C>T	uc003nla.2	-	2	425	c.25G>A	c.(25-27)GAT>AAT	p.D9N	ZNF323_uc003nld.2_Missense_Mutation_p.D9N|ZNF323_uc010jra.2_Missense_Mutation_p.D9N|ZNF323_uc003nlb.2_Intron|ZNF323_uc010jrb.2_Intron|ZNF323_uc003nlc.2_Missense_Mutation_p.D9N	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	9					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATCTTAAGATCGTACTGTTCC	0.418000													12	83					0	0	0.000978159	0	0
OR2B3	442184	broad.mit.edu	37	6	29054291	29054291	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:29054291C>T	uc003nlx.2	-	1	800	c.735G>A	c.(733-735)ATG>ATA	p.M245I		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						ACACCACAATCATGTGGGACC	0.443000													5	31					0	0	0.00116845	0	0
VARS2	57176	broad.mit.edu	37	6	30888877	30888877	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:30888877C>T	uc003nsc.1	+	15	2147	c.1515C>T	c.(1513-1515)TCC>TCT	p.S505S	VARS2_uc011dmx.1_Silent_p.S505S|VARS2_uc011dmy.1_Silent_p.S365S|VARS2_uc011dmz.1_Silent_p.S535S|VARS2_uc011dna.1_Silent_p.S503S|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'UTR|VARS2_uc010jsg.1_5'UTR|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	505					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						TCAGTCCCTCCTTCCACCAGA	0.572000													5	28					0	0	0.00116845	0	0
NOTCH4	4855	broad.mit.edu	37	6	32188182	32188182	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:32188182C>T	uc003obb.2	-	6	1298	c.1159G>A	c.(1159-1161)GGA>AGA	p.G387R	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Missense_Mutation_p.G387R	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	387	EGF-like 9; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ACCCCCATACCTGTGCGTCCA	0.597000													50	242					0	0	0.000781405	0	0
MIR1275	100302123	broad.mit.edu	37	6	33967763	33967763	+	RNA	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:33967763G>A	hsa-mir-1275|MI0006415	-			c.66G>A																				0						TCTGCCTTGGGGAAAATAAGT	0.512000													8	59					0	0	0.000274275	0	0
KCTD20	222658	broad.mit.edu	37	6	36454665	36454665	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:36454665C>T	uc003ome.2	+	8	1364	c.973C>T	c.(973-975)CCT>TCT	p.P325S	KCTD20_uc011dtm.1_Missense_Mutation_p.P180S|KCTD20_uc011dtn.1_Missense_Mutation_p.P79S|KCTD20_uc010jwk.2_Missense_Mutation_p.P159S|KCTD20_uc011dto.1_Missense_Mutation_p.P79S	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	325						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						TGCAGGTTACCCTACCTGTAA	0.433000													8	140					0	0	0.000274275	0	0
PIM1	5292	broad.mit.edu	37	6	37140845	37140845	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:37140845C>T	uc003onk.2	+	5	1111	c.681C>T	c.(679-681)TCC>TCT	p.S227S	PIM1_uc011dtw.1_Missense_Mutation_p.P96L	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	318	Protein kinase.				cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	CAGTCTGGTCCCTGGGGATCC	0.542000			T	BCL6	NHL								19	55					0	0	0.00121646	0	0
KCNK5	8645	broad.mit.edu	37	6	39159209	39159209	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:39159209C>T	uc003oon.2	-	5	1321	c.957G>A	c.(955-957)GGG>GGA	p.G319G		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	319	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGCCCGTCTCCCCACCCCCGC	0.617000													13	98					0	0	0.00185496	0	0
BYSL	705	broad.mit.edu	37	6	41889369	41889369	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:41889369C>T	uc003orl.2	+	1	405	c.69C>T	c.(67-69)ATC>ATT	p.I23I	MED20_uc003orj.2_5'Flank|MED20_uc003ork.2_5'Flank|MED20_uc011duh.1_5'Flank|MED20_uc011dui.1_5'Flank|MED20_uc011duj.1_5'Flank	NM_004053	NP_004044	Q13895	BYST_HUMAN	bystin	23					cell adhesion|female pregnancy|ribosome biogenesis	cytoplasm|nucleolus					0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000473)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCGATCAGATCCTGGCTGGGA	0.652000											OREG0017436	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	36					0	0	0.000274275	0	0
ZNF318	24149	broad.mit.edu	37	6	43323410	43323411	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:43323410_43323411GG>AA	uc003oux.2	-	4	1739_1740	c.1661_1662CC>TT	c.(1660-1662)CCC>CTT	p.P554L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	554					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			AGCTCCCAAGGGGCTTTGGTAC	0.480000													33	178					0	0	6.4e-05	0	0
MRPL14	64928	broad.mit.edu	37	6	44081941	44081941	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:44081941G>A	uc003owp.2	-	3	206	c.77C>T	c.(76-78)ACT>ATT	p.T26I		NM_032111	NP_115487	Q6P1L8	RM14_HUMAN	mitochondrial ribosomal protein L14 precursor	26					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1	all_cancers(18;1.66e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00309)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0181)			CAGACTCCCAGTGGTGCTGGT	0.542000													15	161					0	0	0.000422831	0	0
HSP90AB1	3326	broad.mit.edu	37	6	44217790	44217790	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:44217790C>A	uc003oxa.1	+	5	631	c.547C>A	c.(547-549)CTC>ATC	p.L183I	HSP90AB1_uc011dvr.1_Missense_Mutation_p.L173I|HSP90AB1_uc003oxb.1_Missense_Mutation_p.L183I|HSP90AB1_uc011dvs.1_Missense_Mutation_p.L3I|HSP90AB1_uc003oxc.1_5'UTR	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	183					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CAAAGTGATCCTCCATCTTAA	0.433000													12	81					2.31682e-05	7.57543e-05	0.000308642	1	0
TCTE1	202500	broad.mit.edu	37	6	44253875	44253875	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:44253875G>A	uc003oxi.2	-	3	828	c.672C>T	c.(670-672)ACC>ACT	p.T224T	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	224										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGTGGTCAACGGTGGGCTCCT	0.637000													6	88					0	0	0.00198382	0	0
GPR115	221393	broad.mit.edu	37	6	47675989	47675989	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:47675989G>A	uc003oza.1	+	3	381	c.123G>A	c.(121-123)GGG>GGA	p.G41G	GPR115_uc003oyz.1_Silent_p.G98G|GPR115_uc003ozb.1_Silent_p.G39G	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	41	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						GCCCTGAAGGGAAACCCAAGA	0.453000													4	19					0	0	0.000602214	0	0
COL21A1	81578	broad.mit.edu	37	6	55925592	55925592	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:55925592C>T	uc003pcs.2	-	27	2586	c.2354G>A	c.(2353-2355)GGA>GAA	p.G785E	COL21A1_uc010jzz.2_Missense_Mutation_p.G170E|COL21A1_uc011dxg.1_Missense_Mutation_p.G158E|COL21A1_uc011dxh.1_Missense_Mutation_p.G170E|COL21A1_uc003pcr.2_Missense_Mutation_p.G142E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	785	Collagen-like 5.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			AAACTCTCTTCCCTGCATCAA	0.318000													4	12					0	0	0.000602214	0	0
ZNF451	26036	broad.mit.edu	37	6	57015571	57015571	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:57015571T>C	uc003pdm.1	+	11	2887	c.2663T>C	c.(2662-2664)ATA>ACA	p.I888T	ZNF451_uc003pdl.2_Missense_Mutation_p.I888T|ZNF451_uc003pdn.1_Intron|uc003pdq.1_Intron|ZNF451_uc003pdk.1_Missense_Mutation_p.I888T	NM_001031623	NP_001026794	Q9Y4E5	ZN451_HUMAN	zinc finger protein 451 isoform 1	888					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung NSC(77;0.145)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ATGACTCATATAGTCTTTGTA	0.368000													7	122					0	0	0.000157383	0	0
SPACA1	81833	broad.mit.edu	37	6	88768457	88768457	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:88768457C>T	uc003pmn.2	+	4	508	c.391C>T	c.(391-393)CTT>TTT	p.L131F		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	131	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		TTCAGAAAGTCTTGAAAGTGT	0.303000													4	29					0	0	0.00116845	0	0
CNR1	1268	broad.mit.edu	37	6	88854232	88854232	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:88854232G>A	uc011dzq.1	-	2	4325	c.762C>T	c.(760-762)GGC>GGT	p.G254G	CNR1_uc010kbz.2_Silent_p.G254G|CNR1_uc011dzr.1_Silent_p.G254G|CNR1_uc011dzs.1_Silent_p.G254G|CNR1_uc003pmq.3_Silent_p.G254G|CNR1_uc011dzt.1_Silent_p.G254G|CNR1_uc010kca.2_Silent_p.G221G	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	254	Helical; Name=4; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	CGCAGTTCCAGCCCAGGAGAG	0.542000													8	69					0	0	0.000442599	0	0
SIM1	6492	broad.mit.edu	37	6	100895167	100895167	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:100895167G>A	uc003pqj.3	-	8	1182	c.975C>T	c.(973-975)ATC>ATT	p.I325I	SIM1_uc010kcu.2_Silent_p.I325I	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	325	PAC.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		TGACGCTGACGATACAGTGTG	0.622000													5	41					0	0	0.000602214	0	0
SIM1	6492	broad.mit.edu	37	6	100897561	100897561	+	Silent	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:100897561T>A	uc003pqj.3	-	4	570	c.363A>T	c.(361-363)GGA>GGT	p.G121G	SIM1_uc010kcu.2_Silent_p.G121G	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	121	PAS 1.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AAATGCTGTTTCCGGTCAGCT	0.577000													6	54					0	0	0.00116845	0	0
LIN28B	389421	broad.mit.edu	37	6	105474224	105474224	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:105474224G>A	uc003pqv.1	+	3	453	c.250G>A	c.(250-252)GAA>AAA	p.E84K	LIN28B_uc010kda.1_Missense_Mutation_p.E44K	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	84	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				AGAACCAGTGGAATTCACATT	0.418000													21	111					0	0	0.00278032	0	0
C6orf186	728464	broad.mit.edu	37	6	110620292	110620292	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:110620292G>A	uc010kdu.1	-	4	619	c.619C>T	c.(619-621)CGT>TGT	p.R207C	C6orf186_uc003pub.2_Missense_Mutation_p.R10C	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	207						extracellular region					0						GGATCAAAACGATGCACTTCA	0.468000													17	72					0	0	0.000566183	0	0
HS3ST5	222537	broad.mit.edu	37	6	114378925	114378925	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:114378925C>T	uc003pwg.3	-	2	569	c.537G>A	c.(535-537)TTG>TTA	p.L179L	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Silent_p.L179L	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	179	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		TGACAATGATCAACAACTTGA	0.408000													13	188					0	0	0.00136819	0	0
FAM162B	221303	broad.mit.edu	37	6	117086375	117086375	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:117086375G>A	uc003pxi.2	-	2	363	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_001085480	NP_001078949	Q5T6X4	F162B_HUMAN	hypothetical protein LOC221303	72						integral to membrane					0						TTTTCTTGTCGAACTGCGAAG	0.617000													8	44					0	0	0.000442599	0	0
LAMA2	3908	broad.mit.edu	37	6	129635944	129635944	+	Splice_Site	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:129635944G>A	uc003qbn.2	+	24	3660	c.3555_splice	c.e24+1	p.W1185_splice	LAMA2_uc003qbo.2_Splice_Site_p.W1185_splice	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor						cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CCGGACGTGGGTGAGTAGGGA	0.483000													19	77					0	0	0.00047179	0	0
SAMD3	154075	broad.mit.edu	37	6	130497140	130497140	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:130497140C>T	uc003qbv.2	-	9	994	c.668G>A	c.(667-669)CGA>CAA	p.R223Q	SAMD3_uc003qbx.2_Missense_Mutation_p.R223Q|SAMD3_uc003qbw.2_Missense_Mutation_p.R223Q|SAMD3_uc010kfg.1_3'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	223										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TTTGAGGGCTCGTTTCCATAA	0.348000													12	66					0	0	0.000308642	0	0
MLLT4	4301	broad.mit.edu	37	6	168265333	168265333	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr6:168265333G>A	uc003qwd.2	+	2	350	c.208G>A	c.(208-210)GAT>AAT	p.D70N	MLLT4_uc003qwb.1_Missense_Mutation_p.D70N|MLLT4_uc003qwc.1_Missense_Mutation_p.D70N	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	70	Ras-associating 1.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		CACCACTCAAGATGTAATCGA	0.438000			T	MLL	AL								46	237					0	0	0.00285205	0	0
FAM20C	56975	broad.mit.edu	37	7	195668	195668	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:195668C>T	uc003sip.2	+	2	951	c.720C>T	c.(718-720)TCC>TCT	p.S240S		NM_020223	NP_064608	Q8IXL6	DMP4_HUMAN	family with sequence similarity 20, member C	240						extracellular region					0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.57e-17)|Epithelial(4;1.26e-16)|all cancers(6;4.79e-14)		AGCTGTACTCCAGACACAACC	0.612000													8	65					0	0	0.000157383	0	0
DNAH11	8701	broad.mit.edu	37	7	21723549	21723549	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:21723549C>T	uc003svc.2	+	33	5660	c.5629C>T	c.(5629-5631)CCT>TCT	p.P1877S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1877	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGTGATCACTCCTCTAACTGA	0.413000									Kartagener_syndrome				9	61					0	0	0.000442599	0	0
RAPGEF5	9771	broad.mit.edu	37	7	22196440	22196440	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:22196440C>T	uc003svg.2	-	16	1478	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	RAPGEF5_uc011jyl.1_Missense_Mutation_p.E70K	NM_012294	NP_036426	Q92565	RPGF5_HUMAN	Rap guanine nucleotide exchange factor (GEF) 5	239					nervous system development|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	nucleus	GTP-dependent protein binding|Rap guanyl-nucleotide exchange factor activity			ovary(1)	1						TCCTCCGTTTCAGTCACAGTT	0.453000													7	61					0	0	0.000274275	0	0
MPP6	51678	broad.mit.edu	37	7	24708173	24708173	+	Missense_Mutation	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:24708173C>G	uc003swx.2	+	10	1307	c.1008C>G	c.(1006-1008)TTC>TTG	p.F336L	MPP6_uc003swy.2_Missense_Mutation_p.F336L|MPP6_uc010kur.2_Missense_Mutation_p.F4L	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	336					protein complex assembly		protein binding				0						TGCCTCCCTTCCAGAGAAAAA	0.373000													7	30					0	0	0.000157383	0	0
HOXA3	3200	broad.mit.edu	37	7	27148122	27148122	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:27148122C>T	uc011jzl.1	-	3	944	c.744G>A	c.(742-744)AAG>AAA	p.K248K	HOXA3_uc011jzk.1_Silent_p.K90K|HOXA3_uc003syk.2_Silent_p.K248K	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	248	Homeobox.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						CCTTCTGATCCTTTTTGTACT	0.597000													20	82					0	0	0.00121646	0	0
GPR141	353345	broad.mit.edu	37	7	37780529	37780529	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:37780529G>A	uc003tfm.1	+	1	534	c.534G>A	c.(532-534)GTG>GTA	p.V178V	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	178	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						ACACATATGTGAAAATCATCA	0.403000													8	51					0	0	0.000157383	0	0
VPS41	27072	broad.mit.edu	37	7	38783015	38783015	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:38783015G>A	uc003tgy.2	-	24	2135	c.2109C>T	c.(2107-2109)TCC>TCT	p.S703S	VPS41_uc003tgz.2_Silent_p.S678S|VPS41_uc010kxn.2_Silent_p.S614S|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	703	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						GTTTGTCAATGGAATATAAAA	0.338000													6	15					0	0	0.00198382	0	0
OGDH	4967	broad.mit.edu	37	7	44741166	44741166	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:44741166C>T	uc003tln.2	+	20	2693	c.2584C>T	c.(2584-2586)CTG>TTG	p.L862L	OGDH_uc011kbx.1_Silent_p.L858L|OGDH_uc011kby.1_Silent_p.L712L|OGDH_uc003tlp.2_Silent_p.L873L|OGDH_uc011kbz.1_Silent_p.L657L	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	862					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CCCCAAATCCCTGTTGCGCCA	0.498000													10	53					0	0	0.000978159	0	0
TYW1	55253	broad.mit.edu	37	7	66490002	66490002	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:66490002A>T	uc003tvn.2	+	7	1126	c.977A>T	c.(976-978)AAA>ATA	p.K326I	TYW1_uc010lai.2_RNA	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	326					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				CATGTGAAGAAAGAAAAGGTA	0.413000													13	81					0	0	0.000308642	0	0
WBSCR17	64409	broad.mit.edu	37	7	70800543	70800543	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:70800543C>T	uc003tvy.2	+	2	246	c.246C>T	c.(244-246)TCC>TCT	p.S82S	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	82	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TAGGCTTATCCAAATCCCTTG	0.468000													10	51					0	0	0.000978159	0	0
CLDN4	1364	broad.mit.edu	37	7	73245625	73245625	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:73245625G>A	uc003tzi.3	+	1	433	c.94G>A	c.(94-96)GTG>ATG	p.V32M	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	32	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				CATGTGGCGCGTGACGGCCTT	0.632000													8	50					0	0	0.000157383	0	0
CCDC146	57639	broad.mit.edu	37	7	76922443	76922443	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:76922443G>A	uc003uga.2	+	18	2717	c.2590G>A	c.(2590-2592)GAA>AAA	p.E864K	CCDC146_uc010ldp.2_Missense_Mutation_p.E578K|CCDC146_uc003ugc.2_Missense_Mutation_p.E201K	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	864										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				ACTCAATAAGGAAATTGAGAA	0.433000													13	98					0	0	0.00136819	0	0
MAGI2	9863	broad.mit.edu	37	7	77755082	77755082	+	Missense_Mutation	SNP	C	T	T	rs139559003		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:77755082C>T	uc003ugx.2	-	20	3750	c.3496G>A	c.(3496-3498)GAA>AAA	p.E1166K	MAGI2_uc003ugy.2_Missense_Mutation_p.E1152K|MAGI2_uc010ldx.1_Missense_Mutation_p.E759K	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1166	PDZ 6.					cell junction|synapse|synaptosome	phosphatase binding	p.E1166K(1)		ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				ATTTTGTATTCCCTTCCTCCA	0.413000													13	53					0	0	0.00185496	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997290	82997290	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:82997290G>A	uc003uhy.1	-	17	2406	c.1940C>T	c.(1939-1941)TCA>TTA	p.S647L		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	647	Ig-like C2-type.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CCCAGCATCTGATTTGTGTAA	0.428000													8	53					0	0	0.000274275	0	0
ABCB1	5243	broad.mit.edu	37	7	87144652	87144652	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:87144652C>T	uc003uiz.1	-	26	3595	c.3177G>A	c.(3175-3177)GAG>GAA	p.E1059E	ABCB1_uc011khc.1_Silent_p.E995E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	1059	Cytoplasmic (Potential).|ABC transporter 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTTCTTCACCTCCAGGCTCA	0.567000													9	47					0	0	0.000673444	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95614188	95614188	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:95614188C>T	uc003uoc.3	+	8	970	c.693C>T	c.(691-693)CTC>CTT	p.L231L	DYNC1I1_uc003uod.3_Silent_p.L214L|DYNC1I1_uc003uob.2_Silent_p.L194L|DYNC1I1_uc003uoe.3_Silent_p.L211L|DYNC1I1_uc010lfl.2_Silent_p.L220L	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	231					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			AGGAATTTCTCATCTTTTTTG	0.398000													6	61					0	0	0.00116845	0	0
TECPR1	25851	broad.mit.edu	37	7	97854178	97854178	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:97854178G>A	uc003upg.2	-	19	2830	c.2625C>T	c.(2623-2625)TTC>TTT	p.F875F		NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	875						integral to membrane	protein binding			pancreas(1)	1						TGAAATCCACGAACCAGTCGG	0.647000													3	3					0	0	6.4e-05	0	0
NPTX2	4885	broad.mit.edu	37	7	98254457	98254457	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:98254457C>T	uc003upl.2	+	3	1044	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	289	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			ACAACCCCATCGAGCTGCTCA	0.662000													14	69					0	0	0.000308642	0	0
PILRB	29990	broad.mit.edu	37	7	99956576	99956576	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:99956576C>T	uc003uuk.2	+	16	2824	c.328C>T	c.(328-330)CTC>TTC	p.L110F	PILRB_uc003uul.2_Missense_Mutation_p.P40L|PILRB_uc003uum.1_RNA|PILRB_uc003uun.2_Missense_Mutation_p.L110F	NM_013440	NP_038468	Q9UKJ0	PILRB_HUMAN	paired immunoglobulin-like type 2 receptor beta	110	Extracellular (Potential).|Ig-like V-type.				activation of transmembrane receptor protein tyrosine kinase activity	integral to plasma membrane	protein binding|receptor activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GAGCGGCTTCCTCAGGATCTC	0.562000													24	134					0	0	0.000720815	0	0
MUC17	140453	broad.mit.edu	37	7	100685591	100685591	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:100685591G>A	uc003uxp.1	+	3	10947	c.10894G>A	c.(10894-10896)GAA>AAA	p.E3632K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3632	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|58.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAAGTAAGCAC	0.488000													12	99					0	0	0.00136819	0	0
KCND2	3751	broad.mit.edu	37	7	119915597	119915597	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:119915597C>T	uc003vjj.1	+	1	1876	c.911C>T	c.(910-912)TCC>TTC	p.S304F		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	304	Helical; Voltage-sensor; Name=Segment S4; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TTTAAGTTTTCCCGCCACTCT	0.517000													33	48					0	0	0.00058488	0	0
FAM3C	10447	broad.mit.edu	37	7	121004237	121004237	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:121004237A>C	uc003vjx.2	-	6	526	c.278T>G	c.(277-279)ATG>AGG	p.M93R	FAM3C_uc010lkm.2_Missense_Mutation_p.M93R	NM_014888	NP_055703	Q92520	FAM3C_HUMAN	family with sequence similarity 3, member C	93					multicellular organismal development	cytoplasmic membrane-bounded vesicle|extracellular region	cytokine activity				0	all_neural(327;0.117)					AACACCACTCATTAAACTGAA	0.279000													23	38					0	0	0.000720815	0	0
HYAL4	23553	broad.mit.edu	37	7	123509071	123509071	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:123509071C>T	uc003vlc.2	+	3	1382	c.744C>T	c.(742-744)CTC>CTT	p.L248L	HYAL4_uc011knz.1_Silent_p.L248L	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	248	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						ACAATGAGCTCTCTTGGCTCT	0.443000													7	142					0	0	0.00198382	0	0
FLNC	2318	broad.mit.edu	37	7	128493032	128493032	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:128493032C>T	uc003vnz.3	+	37	6364	c.6155C>T	c.(6154-6156)TCC>TTC	p.S2052F	FLNC_uc003voa.3_Missense_Mutation_p.S2019F	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2052	Filamin 19.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						AAGGGGCTTTCCGAGGGACAC	0.617000													43	92					0	0	0.000781405	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129688901	129688901	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:129688901G>A	uc003vpi.2	-	2	257	c.230C>T	c.(229-231)GCC>GTC	p.A77V		NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	77					cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					GCTAAAGAAGGCTTCTTTGCT	0.413000													13	145					0	0	0.00185496	0	0
PLXNA4	91584	broad.mit.edu	37	7	131844263	131844263	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:131844263G>A	uc003vra.3	-	25	4858	c.4629C>T	c.(4627-4629)TCC>TCT	p.S1543S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1543	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGGCCGGTGGGAGCAAGGCA	0.552000													28	289					0	0	0.00178596	0	0
BPGM	669	broad.mit.edu	37	7	134346736	134346736	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:134346736G>A	uc003vrv.2	+	3	1018	c.477G>A	c.(475-477)AAG>AAA	p.K159K	BPGM_uc003vrw.2_Silent_p.K159K|BPGM_uc003vrx.2_Silent_p.K159K	NM_199186	NP_954655	P07738	PMGE_HUMAN	bisphosphoglycerate mutase	159					glycolysis|respiratory gaseous exchange		2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity				0						AAAGCTTAAAGGATGTTCTGG	0.448000													11	77					0	0	0.00136819	0	0
SLC13A4	26266	broad.mit.edu	37	7	135375956	135375956	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:135375956C>T	uc003vta.2	-	13	2125	c.1436G>A	c.(1435-1437)GGT>GAT	p.G479D	SLC13A4_uc003vtb.2_Missense_Mutation_p.G480D|PL-5283_uc003vsz.3_Intron	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	479	Helical; (Potential).					integral to plasma membrane	sodium:sulfate symporter activity				0						TACCTTGCTACCAGAAGCCAG	0.328000													5	61					0	0	0.00116845	0	0
SLC13A4	26266	broad.mit.edu	37	7	135375975	135375975	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:135375975C>T	uc003vta.2	-	13	2106	c.1417G>A	c.(1417-1419)GGC>AGC	p.G473S	SLC13A4_uc003vtb.2_Missense_Mutation_p.G474S|PL-5283_uc003vsz.3_Intron	NM_012450	NP_036582	Q9UKG4	S13A4_HUMAN	solute carrier family 13 (sodium/sulfate	473	Helical; (Potential).					integral to plasma membrane	sodium:sulfate symporter activity				0						AGAGCATAGCCTCCCCCAACC	0.383000													6	70					0	0	0.00198382	0	0
SVOPL	136306	broad.mit.edu	37	7	138313025	138313025	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:138313025G>A	uc011kqh.1	-	10	947	c.947C>T	c.(946-948)TCA>TTA	p.S316L	SVOPL_uc003vue.2_Missense_Mutation_p.S164L	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	316						integral to membrane	transmembrane transporter activity				0						CGCAGAGTCTGACTTTGAACC	0.557000													18	75					0	0	0.00074312	0	0
BRAF	673	broad.mit.edu	37	7	140453134	140453134	+	Missense_Mutation	SNP	T	C	C	rs121913377		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:140453134T>C	uc003vwc.3	-	15	1862	c.1801A>G	c.(1801-1803)AAA>GAA	p.K601E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	601	Protein kinase.		K -> Q (in CFC syndrome).|K -> E (in colorectal cancer).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.K601E(47)|p.V600_K601>E(8)|p.K601N(7)|p.K601del(4)|p.K601Q(3)|p.T599_R603>I(2)|p.V600_W604del(1)|p.K601K(1)|p.K601L(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.K601I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CATCGAGATTTCACTGTAGCT	0.368000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	40					0	0	0.0024448	0	0
MGAM	8972	broad.mit.edu	37	7	141758086	141758086	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:141758086C>T	uc003vwy.2	+	31	3831	c.3777C>T	c.(3775-3777)ATC>ATT	p.I1259I		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1259	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTCTGAGATCGCCAGCTTGT	0.498000													148	312					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	7	142001095	142001095	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:142001095G>A	uc011kro.1	+	2	232	c.187G>A	c.(187-189)GAG>AAG	p.E63K						SubName: Full=V_segment translation product; Flags: Fragment;																		GCAGAAAGTCGAGTTTCTGGT	0.393000													4	31					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	7	142499844	142499844	+	RNA	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:142499844G>A	uc003wbe.3	+	4		c.514G>A			uc003wbf.3_RNA|uc003wbh.3_Silent_p.G200G|uc003wbi.3_RNA|uc003wbm.3_RNA|uc003wbn.3_RNA|uc010los.2_RNA					Homo sapiens mRNA for T cell receptor V beta14-D-J, partial cds.																		TCTTGCTAGGGAAGGCCACCT	0.567000													9	70					0	0	0.000978159	0	0
OR6V1	346517	broad.mit.edu	37	7	142749462	142749462	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:142749462G>A	uc011ksv.1	+	1	25	c.25G>A	c.(25-27)GAA>AAA	p.E9K		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					CCAGCCCTCCGAATTTGTCCT	0.408000													55	142					0	0	0.000781405	0	0
PDIA4	9601	broad.mit.edu	37	7	148701084	148701084	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:148701084G>A	uc003wff.2	-	10	2022	c.1740C>T	c.(1738-1740)ATC>ATT	p.I580I		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	580	Thioredoxin 3.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			CCATCTTGGCGATGACCAGGC	0.597000													11	65					0	0	0.000978159	0	0
ZNF746	155061	broad.mit.edu	37	7	149174082	149174082	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:149174082G>A	uc003wfw.2	-	6	1040	c.769C>T	c.(769-771)CCT>TCT	p.P257S	ZNF746_uc010lpi.2_Missense_Mutation_p.P257S	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	257					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGGTGGGGAGGGAGATCCGTT	0.627000													6	56					0	0	0.00116845	0	0
SSPO	23145	broad.mit.edu	37	7	149509388	149509388	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:149509388C>T	uc010lpk.2	+	70	9786	c.9786C>T	c.(9784-9786)TCC>TCT	p.S3262S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3262	TSP type-1 12.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCCCTGGTCCCACTGTAGCC	0.716000													7	22					0	0	0.000442599	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269672	150269672	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:150269672C>T	uc003whl.2	+	3	596	c.514C>T	c.(514-516)CCA>TCA	p.P172S	GIMAP4_uc011kuu.1_Missense_Mutation_p.P33S|GIMAP4_uc011kuv.1_Missense_Mutation_p.P186S	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	172							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGGGAAGCTCCAGAAGACAT	0.468000													10	79					0	0	0.000442599	0	0
ABP1	26	broad.mit.edu	37	7	150558086	150558086	+	Missense_Mutation	SNP	T	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:150558086T>C	uc003why.1	+	6	6263	c.2045T>C	c.(2044-2046)ATT>ACT	p.I682T	ABP1_uc003whz.1_Missense_Mutation_p.I682T|ABP1_uc003wia.1_Missense_Mutation_p.I701T	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	682					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TCAGAGGACATTCCCAACACA	0.617000													6	52					0	0	0.00116845	0	0
CRYGN	155051	broad.mit.edu	37	7	151135252	151135252	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:151135252C>T	uc003wke.2	-	2	196	c.100G>A	c.(100-102)GGC>AGC	p.G34S	CRYGN_uc003wkf.2_Missense_Mutation_p.G34S|CRYGN_uc003wkg.2_RNA|CRYGN_uc010lqd.1_5'Flank	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	34	Beta/gamma crystallin 'Greek key' 1.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCATAAAGCCCCGGTCCTGG	0.567000													14	44					0	0	0.00185496	0	0
MLL3	58508	broad.mit.edu	37	7	151878661	151878661	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:151878661C>T	uc003wla.2	-	36	6503	c.6284G>A	c.(6283-6285)AGT>AAT	p.S2095N	MLL3_uc003wkz.2_Missense_Mutation_p.S1156N	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2095	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGGAGGCTGACTATATGGATC	0.453000			N		medulloblastoma								9	50					0	0	0.000274275	0	0
ACTR3B	57180	broad.mit.edu	37	7	152497740	152497740	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:152497740G>A	uc003wle.1	+	3	342	c.225G>A	c.(223-225)AAG>AAA	p.K75K	ACTR3B_uc003wlf.1_Silent_p.K75K|ACTR3B_uc003wlg.1_Translation_Start_Site|ACTR3B_uc011kvp.1_Intron	NM_020445	NP_065178	Q9P1U1	ARP3B_HUMAN	actin-related protein 3-beta isoform 1	75					regulation of actin filament polymerization	cell projection|cytoplasm|cytoskeleton	actin binding|ATP binding				0		all_hematologic(28;0.0592)|Prostate(32;0.191)	OV - Ovarian serous cystadenocarcinoma(82;0.0287)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0434)		ATGCTACAAAGGTAAATTTCC	0.403000													11	79					0	0	0.000978159	0	0
CSMD1	64478	broad.mit.edu	37	8	3000022	3000022	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:3000022G>A	uc011kwk.1	-	41	6599	c.6209C>T	c.(6208-6210)TCG>TTG	p.S2070L	CSMD1_uc011kwj.1_Missense_Mutation_p.S1462L|CSMD1_uc010lrg.2_Missense_Mutation_p.S138L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2070	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCGGTTTTGCGAATGGTCACT	0.453000													6	43					0	0	0.00116845	0	0
PSD3	23362	broad.mit.edu	37	8	18729272	18729272	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:18729272G>A	uc003wza.2	-	3	1205	c.1102C>T	c.(1102-1104)CCT>TCT	p.P368S		NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	368					regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CTCTCTGAAGGAGCTTTCCAG	0.468000													5	69					0	0	0.000602214	0	0
EPB49	2039	broad.mit.edu	37	8	21931340	21931340	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:21931340C>T	uc011kyt.1	+	10	1058	c.829C>T	c.(829-831)CAT>TAT	p.H277Y	EPB49_uc010ltl.2_Missense_Mutation_p.H277Y|EPB49_uc011kys.1_Missense_Mutation_p.H237Y|EPB49_uc010ltn.2_Missense_Mutation_p.H252Y|EPB49_uc011kyu.1_Missense_Mutation_p.H277Y|EPB49_uc011kyv.1_Missense_Mutation_p.H277Y|EPB49_uc010ltq.2_Missense_Mutation_p.H277Y	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	277	Interaction with RASGRF2.				actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		GACACCCTTCCATACCTGTGA	0.517000													6	49					0	0	0.00116845	0	0
STC1	6781	broad.mit.edu	37	8	23711947	23711947	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:23711947C>T	uc003xdw.1	-	1	374	c.90G>A	c.(88-90)AGG>AGA	p.R30R		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	30					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		CTCGGGATTTCCTGGGGCTCA	0.532000													13	75					0	0	0.00136819	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24256428	24256428	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:24256428G>A	uc003xdz.2	+	9	1024	c.804G>A	c.(802-804)ATG>ATA	p.M268I	ADAMDEC1_uc010lub.2_Missense_Mutation_p.M189I|ADAMDEC1_uc011lab.1_Missense_Mutation_p.M189I	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	268	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		TGGTAGGTATGGAAATCTGGT	0.438000													6	27					0	0	0.00198382	0	0
PURG	29942	broad.mit.edu	37	8	30889612	30889612	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:30889612C>T	uc003xin.2	-	1	706	c.687G>A	c.(685-687)ATG>ATA	p.M229I	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.M229I	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	229	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		GAAACTCAATCATTCCTTGTG	0.488000													13	103					0	0	0.000308642	0	0
KCNU1	157855	broad.mit.edu	37	8	36793060	36793060	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:36793060G>A	uc010lvw.2	+	27	3159	c.3072G>A	c.(3070-3072)GAG>GAA	p.E1024E		NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	1024	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CAGCCAATGAGTTCAAGCTGC	0.448000													5	42					0	0	0.00116845	0	0
MYST3	7994	broad.mit.edu	37	8	41812837	41812837	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:41812837G>A	uc010lxb.2	-	10	2119	c.1575C>T	c.(1573-1575)TCC>TCT	p.S525S	MYST3_uc010lxc.2_Silent_p.S525S|MYST3_uc003xon.3_Silent_p.S525S|MYST3_uc010lxd.2_Silent_p.S525S	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	525	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.|Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding	p.S525S(1)		ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GAGGATATGGGGAGGAGTACC	0.373000													7	52					0	0	0.000274275	0	0
PRKDC	5591	broad.mit.edu	37	8	48713385	48713385	+	Missense_Mutation	SNP	A	C	C			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:48713385A>C	uc003xqi.2	-	72	10142	c.10085T>G	c.(10084-10086)CTT>CGT	p.L3362R	PRKDC_uc003xqj.2_Missense_Mutation_p.L3362R|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3362	FAT.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GGATCCAGAAAGCTCTAAGAT	0.468000								NHEJ					3	32					0	0	6.4e-05	0	0
ST18	9705	broad.mit.edu	37	8	53049985	53049985	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:53049985G>A	uc003xqz.2	-	13	2383	c.2227C>T	c.(2227-2229)CGC>TGC	p.R743C	ST18_uc011ldq.1_Missense_Mutation_p.R390C|ST18_uc011ldr.1_Missense_Mutation_p.R708C|ST18_uc011lds.1_Missense_Mutation_p.R648C|ST18_uc003xra.2_Missense_Mutation_p.R743C	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	743	C2HC-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGGTACCTGCGATGAGATGCA	0.413000													6	34					0	0	0.00116845	0	0
IMPAD1	54928	broad.mit.edu	37	8	57878841	57878841	+	Silent	SNP	G	A	A	rs141898546	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:57878841G>A	uc003xte.3	-	4	1000	c.717C>T	c.(715-717)ATC>ATT	p.I239I		NM_017813	NP_060283	Q9NX62	IMPA3_HUMAN	inositol monophosphatase domain containing 1	239						Golgi apparatus|integral to membrane	inositol-1(or 4)-monophosphatase activity|metal ion binding			ovary(1)	1		all_cancers(86;0.175)|all_lung(136;0.0321)|Lung NSC(129;0.0417)|all_epithelial(80;0.0448)				GAGACACAACGATCCTTGGGG	0.458000													21	73					0	0	0.00152264	0	0
CYP7B1	9420	broad.mit.edu	37	8	65528319	65528319	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:65528319C>T	uc003xvj.2	-	3	983	c.779G>A	c.(778-780)TGG>TAG	p.W260*		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	260					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AACTTCTGACCATCCTTGCAT	0.388000													12	82					0	0	0.00185496	0	0
ADHFE1	137872	broad.mit.edu	37	8	67356917	67356917	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:67356917C>T	uc003xwb.3	+	5	321	c.287C>T	c.(286-288)TCC>TTC	p.S96F	ADHFE1_uc003xwd.3_RNA|ADHFE1_uc003xwc.3_Missense_Mutation_p.S48F|ADHFE1_uc003xwe.3_RNA|ADHFE1_uc003xwf.3_RNA|ADHFE1_uc011les.1_Missense_Mutation_p.S26F|ADHFE1_uc011leq.1_RNA|ADHFE1_uc011ler.1_RNA	NM_144650	NP_653251	Q8IWW8	HOT_HUMAN	alcohol dehydrogenase, iron containing, 1	96					2-oxoglutarate metabolic process|molecular hydrogen transport	mitochondrial matrix	hydroxyacid-oxoacid transhydrogenase activity|metal ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4		Lung NSC(129;0.197)	Epithelial(68;0.0321)|all cancers(69;0.0751)|BRCA - Breast invasive adenocarcinoma(89;0.0855)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			GCTATGGATTCCCTAGTGAAG	0.403000													24	175					0	0	0.00178596	0	0
PREX2	80243	broad.mit.edu	37	8	69021761	69021761	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:69021761G>A	uc003xxv.1	+	25	3076	c.3049G>A	c.(3049-3051)GAA>AAA	p.E1017K	PREX2_uc011lez.1_Missense_Mutation_p.E952K	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1017					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TCTGCTAAAAGAAGAAGACTT	0.478000													9	51					0	0	0.000442599	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70585315	70585315	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:70585315G>A	uc003xyl.2	-	10	3043	c.2336C>T	c.(2335-2337)ACC>ATC	p.T779I	SLCO5A1_uc010lzb.2_Missense_Mutation_p.T724I|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_3'UTR	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	779	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CTCACTCACGGTGCTCAGGGG	0.502000													11	87					0	0	0.00136819	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885086	88885087	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:88885086_88885087GG>AA	uc003ydz.2	-	1	1210_1211	c.1113_1114CC>TT	c.(1111-1116)CGCCTC>CGTTTC	p.L372F		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	372										ovary(1)	1						AAGCCCCCGAGGCGAGAAGAGA	0.594000													4	52					0	0	6.4e-05	0	0
C8orf37	157657	broad.mit.edu	37	8	96272124	96272125	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:96272124_96272125CG>AT	uc003yho.1	-	4	337_338	c.317_318CG>AT	c.(316-318)CCG>CAT	p.P106H		NM_177965	NP_808880	Q96NL8	CH037_HUMAN	hypothetical protein LOC157657	106											0	Breast(36;3.41e-05)					CAAGGTACACCGGACTGCAACT	0.327000													7	494					0	0	6.4e-05	0	0
VPS13B	157680	broad.mit.edu	37	8	100160116	100160116	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:100160116C>T	uc003yiv.2	+	14	2002	c.1891C>T	c.(1891-1893)CTT>TTT	p.L631F	VPS13B_uc003yiw.2_Missense_Mutation_p.L631F|VPS13B_uc003yit.2_Missense_Mutation_p.L631F|VPS13B_uc003yiu.1_Missense_Mutation_p.L631F|VPS13B_uc003yix.1_Missense_Mutation_p.L102F	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	631					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGAGGTGGCTCTTCTGGAGGA	0.289000													18	52					0	0	0.000958276	0	0
GRHL2	79977	broad.mit.edu	37	8	102570892	102570892	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:102570892G>A	uc010mbu.2	+	4	860	c.530G>A	c.(529-531)GGA>GAA	p.G177E	GRHL2_uc011lhi.1_Missense_Mutation_p.G177E	NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	177						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TATCCCCGGGGAGATGGGGAA	0.572000													4	55					0	0	0.000602214	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457514	110457514	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:110457514C>T	uc003yne.2	+	38	5520	c.5416C>T	c.(5416-5418)CCA>TCA	p.P1806S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1806	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GACTCCTCTCCCAGTTGGACA	0.468000										HNSCC(38;0.096)			5	98					0	0	0.00198382	0	0
TAF2	6873	broad.mit.edu	37	8	120801086	120801086	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:120801086C>A	uc003you.2	-	13	1897	c.1627G>T	c.(1627-1629)GTC>TTC	p.V543F		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	543					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AGTTCCAAGACATTTCGTTTT	0.348000													10	68					6.40141e-05	0.000209074	0.000978159	1	0
COL14A1	7373	broad.mit.edu	37	8	121238994	121238994	+	Missense_Mutation	SNP	A	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:121238994A>G	uc003yox.2	+	16	2258	c.1993A>G	c.(1993-1995)AAG>GAG	p.K665E	COL14A1_uc003yoy.2_Missense_Mutation_p.K343E	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	665	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CTATGGGGGGAAGACTGAGGA	0.433000													5	46					0	0	0.00116845	0	0
ATAD2	29028	broad.mit.edu	37	8	124413191	124413191	+	RNA	SNP	C	G	G			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:124413191C>G	uc003yqi.3	-	2		c.328G>C			uc003yqk.2_5'Flank			Q6PL18	ATAD2_HUMAN	Homo sapiens PRO2000 mRNA, complete cds.						regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CCCCTCGCACCCTGTGGGTGA	0.607000													4	27					0	0	0.00024832	0	0
FER1L6	654463	broad.mit.edu	37	8	125029953	125029953	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:125029953G>A	uc003yqw.2	+	16	2214	c.2008G>A	c.(2008-2010)GAG>AAG	p.E670K	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	670	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTGCTGGCAGGAGCTGGTATG	0.388000													14	37					0	0	0.00185496	0	0
FER1L6	654463	broad.mit.edu	37	8	125131171	125131171	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:125131171C>T	uc003yqw.2	+	40	5582	c.5376C>T	c.(5374-5376)CCC>CCT	p.P1792P	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1792	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGCCAGAGCCCCTGGCCAAGC	0.498000													3	16					0	0	6.4e-05	0	0
ASAP1	50807	broad.mit.edu	37	8	131138245	131138245	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:131138245A>T	uc003yta.1	-	16	1500	c.1472T>A	c.(1471-1473)ATT>AAT	p.I491N	ASAP1_uc003ysz.1_Missense_Mutation_p.I302N|ASAP1_uc011liw.1_Missense_Mutation_p.I484N	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	491	Arf-GAP.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						CAAAGACTGAATGCGAGAAAT	0.388000													18	48					0	0	0.00121646	0	0
ADCY8	114	broad.mit.edu	37	8	131921973	131921973	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:131921973C>T	uc003ytd.3	-	6	1877	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	ADCY8_uc010mds.2_Missense_Mutation_p.E541K	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	541	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CCTCCAGATTCGAGTTTGTTT	0.463000										HNSCC(32;0.087)			27	182					0	0	0.00209593	0	0
OC90	729330	broad.mit.edu	37	8	133044207	133044207	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:133044207G>A	uc003ytg.2	-	11	952	c.952C>T	c.(952-954)CGG>TGG	p.R318W	OC90_uc011lix.1_Missense_Mutation_p.R318W	NM_001080399	NP_001073868	Q02509	OC90_HUMAN	otoconin 90	334	Phospholipase A2-like 2.				lipid catabolic process|phospholipid metabolic process		calcium ion binding|phospholipase A2 activity			ovary(2)|skin(1)	3	Esophageal squamous(12;0.00693)|Ovarian(258;0.00769)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000805)			TCCGGGCACCGGGATGTCAGA	0.542000													11	81					0	0	0.000978159	0	0
FAM135B	51059	broad.mit.edu	37	8	139263089	139263089	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:139263089C>T	uc003yuy.2	-	6	708	c.537G>A	c.(535-537)TTG>TTA	p.L179L	FAM135B_uc003yux.2_Silent_p.L80L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	179										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CATACCTGATCAATGGCTGCT	0.562000										HNSCC(54;0.14)			16	58					0	0	0.00121646	0	0
FLJ43860	389690	broad.mit.edu	37	8	142481272	142481272	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:142481272C>T	uc003ywi.2	-	16	1970	c.1889G>A	c.(1888-1890)AGG>AAG	p.R630K	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	630							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TTGCCCAATCCTTTTGAAGTC	0.577000													17	50					0	0	0.00074312	0	0
MAPK15	225689	broad.mit.edu	37	8	144803758	144803758	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:144803758C>T	uc003yzj.2	+	12	1285	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	415					protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AGGCAGAACTCCGCTCCCCTG	0.637000													15	58					0	0	0.000422831	0	0
SPATC1	375686	broad.mit.edu	37	8	145096226	145096226	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr8:145096226G>A	uc011lkw.1	+	4	1502	c.1400G>A	c.(1399-1401)CGG>CAG	p.R467Q	SPATC1_uc011lkx.1_Intron	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	467										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAGCGCGTACGGCTCTACGGC	0.637000													4	42					0	0	0.00024832	0	0
JAK2	3717	broad.mit.edu	37	9	5044450	5044450	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:5044450G>A	uc010mhm.2	+	4	511	c.398G>A	c.(397-399)CGG>CAG	p.R133Q	JAK2_uc003ziw.2_Missense_Mutation_p.R133Q	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	133	Interaction with cytokine/interferon/growth hormone receptors (By similarity).|FERM.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		AGAGCCTATCGGCATGGAATA	0.383000		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				6	41					0	0	0.00116845	0	0
CER1	9350	broad.mit.edu	37	9	14722166	14722166	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:14722166G>A	uc003zlj.2	-	1	550	c.505C>T	c.(505-507)CAG>TAG	p.Q169*		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	169	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		ACACATACCTGGCTGAAGGGC	0.537000													11	68					0	0	0.00136819	0	0
KIAA1797	54914	broad.mit.edu	37	9	20926395	20926395	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:20926395A>T	uc003zog.1	+	28	3420	c.3057A>T	c.(3055-3057)CAA>CAT	p.Q1019H	KIAA1797_uc003zoh.1_Missense_Mutation_p.Q455H	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1019						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		CCAGAGGGCAACTTCTCTCCT	0.373000													14	70					0	0	0.00244969	0	0
IFNA7	3444	broad.mit.edu	37	9	21201839	21201839	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:21201839G>A	uc003zop.1	-	1	366	c.326C>T	c.(325-327)TCC>TTC	p.S109F	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	109					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AAGTTCAGTGGAAAATTTTTC	0.493000													17	79					0	0	0.000566183	0	0
IFNE	338376	broad.mit.edu	37	9	21481125	21481125	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:21481125C>T	uc003zpg.2	-	1	1188	c.569G>A	c.(568-570)GGA>GAA	p.G190E	LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	interferon, epsilon precursor	190					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0						CAAGGGTCTTCCTTGTTTGCT	0.473000													18	140					0	0	0.000958276	0	0
DMRTA1	63951	broad.mit.edu	37	9	22451457	22451457	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:22451457G>A	uc003zpp.1	+	2	1287	c.1062G>A	c.(1060-1062)GGG>GGA	p.G354G		NM_022160	NP_071443	Q5VZB9	DMRTA_HUMAN	DMRT-like family A1	354					cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|skin(1)	2		all_cancers(5;4.09e-243)|Acute lymphoblastic leukemia(3;8.25e-150)|all_hematologic(3;4.25e-147)|Esophageal squamous(3;2.32e-09)|Renal(3;1.71e-07)|Breast(3;2.07e-06)|Hepatocellular(5;0.00563)		GBM - Glioblastoma multiforme(1;5.12e-278)|Lung(24;8.2e-52)|LUSC - Lung squamous cell carcinoma(38;1.46e-37)|OV - Ovarian serous cystadenocarcinoma(39;0.0517)		TCTGCAAAGGGGATGTGGTCC	0.458000													6	29					0	0	0.00198382	0	0
C9orf11	54586	broad.mit.edu	37	9	27291062	27291062	+	Splice_Site	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:27291062C>T	uc003zql.2	-	5	461	c.377_splice	c.e5-1	p.R126_splice	C9orf11_uc011lnq.1_Splice_Site_p.G97_splice	NM_020641	NP_065692	Q9NQ60	AFAF_HUMAN	Acr formation associated factor isoform 1							acrosomal membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(39;7.39e-08)|Lung(218;1.26e-05)|LUSC - Lung squamous cell carcinoma(38;0.000106)		GGGGTTGATCCTGTTaaaaca	0.259000													6	21					0	0	0.00116845	0	0
C9orf11	54586	broad.mit.edu	37	9	27297013	27297013	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:27297013G>A	uc003zql.2	-	1	125	c.41C>T	c.(40-42)TCC>TTC	p.S14F	C9orf11_uc011lnq.1_Missense_Mutation_p.S14F|C9orf11_uc003zqm.2_Missense_Mutation_p.S14F	NM_020641	NP_065692	Q9NQ60	AFAF_HUMAN	Acr formation associated factor isoform 1	14						acrosomal membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(39;7.39e-08)|Lung(218;1.26e-05)|LUSC - Lung squamous cell carcinoma(38;0.000106)		ACTTTTTAAGGAAAAAACTCC	0.323000													4	34					0	0	0.000602214	0	0
TAF1L	138474	broad.mit.edu	37	9	32630177	32630177	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:32630177C>T	uc003zrg.1	-	1	5491	c.5401G>A	c.(5401-5403)GGA>AGA	p.G1801R		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1801					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCACCATATCCCACATCAGAG	0.468000													12	72					0	0	0.00185496	0	0
BAG1	573	broad.mit.edu	37	9	33264545	33264545	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:33264545G>A	uc003zsj.2	-	1	217	c.128C>T	c.(127-129)CCC>CTC	p.P43L	SUGT1P1_uc010mjq.1_Intron|BAG1_uc003zsi.2_5'UTR|BAG1_uc003zsk.2_5'UTR|CHMP5_uc003zsl.3_Intron|CHMP5_uc003zsm.3_5'Flank|CHMP5_uc011lnv.1_5'Flank	NM_004323	NP_004314	Q99933	BAG1_HUMAN	BCL2-associated athanogene isoform 1L	43	Arg-rich.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|chaperone cofactor-dependent protein refolding	cytoplasm|intermediate filament cytoskeleton|nucleus	protein binding|receptor signaling protein activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)			ACGCCCAGAGGGAGGCGGACC	0.771000													3	12					0	0	6.4e-05	0	0
IGFBPL1	347252	broad.mit.edu	37	9	38413339	38413339	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:38413339G>A	uc004aba.2	-	3	605	c.582C>T	c.(580-582)TCC>TCT	p.S194S		NM_001007563	NP_001007564	Q8WX77	IBPL1_HUMAN	insulin-like growth factor binding protein-like	194	Ig-like C2-type.				regulation of cell growth	extracellular region	insulin-like growth factor binding				0				GBM - Glioblastoma multiforme(29;0.0437)|Lung(182;0.116)		TGCCCTCAGGGGACTTCGTGA	0.582000													11	44					0	0	0.000978159	0	0
SECISBP2	79048	broad.mit.edu	37	9	91954794	91954794	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:91954794C>T	uc004aqj.1	+	9	1308	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S	SECISBP2_uc011ltk.1_Missense_Mutation_p.P409S|SECISBP2_uc004aqk.1_Missense_Mutation_p.P337S|SECISBP2_uc010mqo.1_Missense_Mutation_p.P115S|SECISBP2_uc011ltl.1_Missense_Mutation_p.P342S	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	410					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						CGAGGAATTTCCCAACCTGGC	0.393000													10	58					0	0	0.00244969	0	0
ROR2	4920	broad.mit.edu	37	9	94486934	94486934	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:94486934C>T	uc004arj.1	-	9	2041	c.1842G>A	c.(1840-1842)AAG>AAA	p.K614K	ROR2_uc004ari.1_Silent_p.K474K	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	614	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TGGCCAGGTCCTTGTGAACCA	0.597000													21	88					0	0	0.00229938	0	0
LPPR1	54886	broad.mit.edu	37	9	104079698	104079698	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:104079698C>A	uc004bbb.2	+	7	1264	c.865C>A	c.(865-867)CCC>ACC	p.P289T	LPPR1_uc011lvi.1_Missense_Mutation_p.P265T|LPPR1_uc004bbc.2_Missense_Mutation_p.P289T|LPPR1_uc010mtc.2_Missense_Mutation_p.P273T	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	289						integral to membrane	catalytic activity				0						TCCTTCCAAACCCAAGCCTGA	0.483000													28	207					1.75199e-13	5.77418e-13	0.00127121	1	0
OR13D1	286365	broad.mit.edu	37	9	107457503	107457503	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:107457503G>A	uc011lvs.1	+	1	801	c.801G>A	c.(799-801)AAG>AAA	p.K267K		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	267	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGGGAAGAAAGAAAGCCTTCT	0.378000													15	81					0	0	0.00244969	0	0
SVEP1	79987	broad.mit.edu	37	9	113169844	113169844	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:113169844G>A	uc010mtz.2	-	38	8373	c.8036C>T	c.(8035-8037)ACC>ATC	p.T2679I	SVEP1_uc010mty.2_Missense_Mutation_p.T605I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2679	Sushi 21.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGAAACCATGGTACCATACAG	0.473000													38	185					0	0	0.00111076	0	0
ZNF483	158399	broad.mit.edu	37	9	114305057	114305057	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:114305057G>A	uc004bff.2	+	6	2066	c.1842G>A	c.(1840-1842)ATG>ATA	p.M614I	ZNF483_uc004bfg.2_Intron	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a	614	C2H2-type 7.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						ATTGCGGAATGACTTTTAGCC	0.408000													4	33					0	0	0.00024832	0	0
RNF183	138065	broad.mit.edu	37	9	116059999	116059999	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:116059999G>A	uc004bgz.2	-	2	584	c.466C>T	c.(466-468)CGC>TGC	p.R156C	RNF183_uc004bha.2_Missense_Mutation_p.R156C	NM_145051	NP_659488	Q96D59	RN183_HUMAN	ring finger protein 183	156						integral to membrane	zinc ion binding				0						TGAGGGTTGCGGAAACACTCC	0.587000													8	62					0	0	0.000274275	0	0
PAPPA	5069	broad.mit.edu	37	9	118949912	118949912	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:118949912C>T	uc004bjn.2	+	2	1276	c.895C>T	c.(895-897)CCC>TCC	p.P299S	PAPPA_uc011lxp.1_Missense_Mutation_p.P92S|PAPPA_uc011lxq.1_Missense_Mutation_p.P92S	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	299	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGCCTGGTCCCCCATGAAGGA	0.577000													9	61					0	0	0.000274275	0	0
ASTN2	23245	broad.mit.edu	37	9	119249696	119249696	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:119249696G>A	uc004bjs.1	-	20	3540	c.3439C>T	c.(3439-3441)CCT>TCT	p.P1147S	ASTN2_uc004bjr.1_Missense_Mutation_p.P1143S|ASTN2_uc004bjt.1_Missense_Mutation_p.P1096S|ASTN2_uc004bjp.1_Missense_Mutation_p.P240S|ASTN2_uc004bjq.1_Missense_Mutation_p.P199S|ASTN2_uc011lxr.1_Missense_Mutation_p.P199S|ASTN2_uc011lxs.1_Missense_Mutation_p.P199S|ASTN2_uc011lxt.1_Missense_Mutation_p.P199S|ASTN2_uc004bjo.1_5'UTR	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1147	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CTGACTTCAGGGACCTCTCCA	0.507000													7	71					0	0	0.000157383	0	0
DBC1	1620	broad.mit.edu	37	9	121929643	121929643	+	Silent	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:121929643G>A	uc004bkc.2	-	8	2461	c.2005C>T	c.(2005-2007)CTG>TTG	p.L669L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	669					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCACTGCGCAGGAGGTCGGCG	0.572000													21	137					0	0	0.00188189	0	0
OR1J4	26219	broad.mit.edu	37	9	125282200	125282200	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:125282200C>T	uc011lyw.1	+	1	781	c.781C>T	c.(781-783)CTC>TTC	p.L261F		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACTGTATTTTCTCCCCTCATC	0.473000													5	53					0	0	0.000602214	0	0
PPAPDC3	84814	broad.mit.edu	37	9	134165620	134165620	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:134165620G>A	uc004cal.2	+	1	540	c.236G>A	c.(235-237)GGC>GAC	p.G79D		NM_032728	NP_116117	Q8NBV4	PPAC3_HUMAN	phosphatidic acid phosphatase type 2 domain	79	interaction with MTOR (By similarity).|Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	hydrolase activity			breast(1)	1	all_hematologic(7;0.0119)			OV - Ovarian serous cystadenocarcinoma(145;1.22e-05)|Epithelial(140;0.000173)		TCCTTCAAGGGCATCGCCTTC	0.662000													18	58					0	0	0.00121646	0	0
C9orf96	169436	broad.mit.edu	37	9	136259426	136259426	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:136259426C>T	uc004cdk.2	+	8	653	c.592C>T	c.(592-594)CGT>TGT	p.R198C	C9orf96_uc004cdl.2_RNA	NM_153710	NP_714921	Q8NE28	SGK71_HUMAN	hypothetical protein LOC169436	198	Protein kinase.						ATP binding|protein kinase activity			stomach(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		AGACCCCTTTCGTAAGTCCTG	0.567000													23	99					0	0	0.00278032	0	0
COL5A1	1289	broad.mit.edu	37	9	137620555	137620555	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr9:137620555G>A	uc004cfe.2	+	6	1208	c.826G>A	c.(826-828)GAA>AAA	p.E276K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	276	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTATTACTACGAATACCCCTA	0.607000													25	130					0	0	0.00047179	0	0
MXRA5	25878	broad.mit.edu	37	X	3238787	3238787	+	Missense_Mutation	SNP	C	T	T	rs150094241	byFrequency	TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:3238787C>T	uc004crg.3	-	5	5096	c.4939G>A	c.(4939-4941)GAA>AAA	p.E1647K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1647						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTAGTTATTTCCGGTTTGTTG	0.453000													32	94					0	0	0.0024448	0	0
VCX3A	51481	broad.mit.edu	37	X	6451806	6451806	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:6451806C>T	uc004crs.2	-	3	848	c.541G>A	c.(541-543)GAA>AAA	p.E181K	VCX3A_uc010ndk.1_Intron	NM_016379	NP_057463	Q9NNX9	VCX3_HUMAN	variable charge, X-linked 3A	181	8 X 10 AA tandem repeats of L-S-Q-E-S- [EQ]-V-E-E-P.|8.|Glu-rich.				brain development	nucleolus					0						GGTAGTTCTTCCATCTCGCTC	0.597000													27	85					0	0	0.00178596	0	0
KAL1	3730	broad.mit.edu	37	X	8507772	8507772	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:8507772C>T	uc004csf.2	-	10	1532	c.1382G>A	c.(1381-1383)CGG>CAG	p.R461Q		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	461	Fibronectin type-III 3.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						AGGAAACCACCGCACATGATA	0.478000													10	26					0	0	0.000978159	0	0
EGFL6	25975	broad.mit.edu	37	X	13636018	13636018	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:13636018C>T	uc004cvi.2	+	8	1188	c.948C>T	c.(946-948)TTC>TTT	p.F316F	EGFL6_uc004cvj.2_Silent_p.F316F|EGFL6_uc011mik.1_Silent_p.F217F	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	316					cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						TGCAGCCCTTCAACTATGAAG	0.433000													22	36					0	0	0.000720815	0	0
MAP3K15	389840	broad.mit.edu	37	X	19378893	19378894	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:19378893_19378894CC>AA	uc004czk.1	-	30	3977_3978	c.2340_2341GG>TT	c.(2338-2343)GAGGCC>GATTCC	p.780_781EA>DS	MAP3K15_uc004czj.1_Missense_Mutation_p.740_741EA>DS|PDHA1_uc004czg.3_3'UTR|PDHA1_uc004czh.3_3'UTR|PDHA1_uc011mjc.1_3'UTR|PDHA1_uc011mjd.1_3'UTR|PDHA1_uc010nfk.2_3'UTR|PDHA1_uc010nfl.2_3'UTR|MAP3K15_uc004czi.1_Missense_Mutation_p.239_240EA>DS	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1305_1306							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GTTTCTGAGGCCTCCTGAGCCC	0.505000													6	22					0	0	6.4e-05	0	0
WNK3	65267	broad.mit.edu	37	X	54359611	54359611	+	Missense_Mutation	SNP	C	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:54359611C>A	uc004dtd.1	-	2	935	c.496G>T	c.(496-498)GAC>TAC	p.D166Y	WNK3_uc004dtc.1_Missense_Mutation_p.D166Y	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	166	Protein kinase.				intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						GTTTCAGTGTCCAGTCCTTTA	0.408000													16	35					2.94398e-08	9.68072e-08	0.000958276	1	0
PAGE2B	389860	broad.mit.edu	37	X	55102477	55102477	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:55102477G>A	uc004due.2	+	2	55	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001015038	NP_001015038	Q5JRK9	GGEE3_HUMAN	P antigen family, member 2B	1											0						TGGGAAATATGAGTGAGCATG	0.358000													9	17					0	0	0.000442599	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960361	73960361	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:73960361G>A	uc004eby.2	-	3	4648	c.4031C>T	c.(4030-4032)CCC>CTC	p.P1344L		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1344					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTGCTCCATGGGTTCCCAAAG	0.478000													5	17					0	0	0.000602214	0	0
MAGEE2	139599	broad.mit.edu	37	X	75004550	75004550	+	Missense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:75004550C>T	uc004ecj.1	-	1	522	c.337G>A	c.(337-339)GAG>AAG	p.E113K		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	113	MAGE 1.									ovary(1)|skin(1)	2						TCCAGCATCTCGGACTGCTGG	0.532000													10	15					0	0	0.000442599	0	0
TBX22	50945	broad.mit.edu	37	X	79286536	79286536	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:79286536G>A	uc010nmg.1	+	9	1623	c.1489G>A	c.(1489-1491)GAC>AAC	p.D497N	TBX22_uc004edi.1_Missense_Mutation_p.D377N|TBX22_uc004edj.1_Missense_Mutation_p.D497N	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	497					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						AGTGAATGACGACAGTCAAGT	0.348000													5	7					0	0	0.000602214	0	0
PLP1	5354	broad.mit.edu	37	X	103042837	103042837	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:103042837C>T	uc010nov.2	+	5	844	c.564C>T	c.(562-564)GCC>GCT	p.A188A	RAB9B_uc004eli.1_Intron|PLP1_uc004elk.2_Silent_p.A188A|PLP1_uc004elj.2_Silent_p.A153A|PLP1_uc011msf.1_Silent_p.A133A|PLP1_uc010nox.2_Silent_p.A142A	NM_001128834	NP_001122306	P60201	MYPR_HUMAN	proteolipid protein 1 isoform 1	188	Extracellular (Probable).				cell death|synaptic transmission	integral to membrane				ovary(1)	1						AGTCTATTGCCTTCCCCAGCA	0.537000													6	46					0	0	0.000274275	0	0
RBM41	55285	broad.mit.edu	37	X	106332042	106332042	+	Missense_Mutation	SNP	T	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:106332042T>A	uc004emz.2	-	5	582	c.551A>T	c.(550-552)GAT>GTT	p.D184V	RBM41_uc004emy.1_Missense_Mutation_p.D184V	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	184							nucleotide binding|RNA binding			ovary(1)	1						GTTCATGGGATCACCTTTGTT	0.373000													11	42					0	0	0.00185496	0	0
AGTR2	186	broad.mit.edu	37	X	115303705	115303705	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:115303705G>A	uc004eqh.3	+	3	379	c.172G>A	c.(172-174)GGA>AGA	p.G58R		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	58	Helical; Name=1; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						ATTTGTAATTGGATTTCTGGT	0.363000													6	18					0	0	0.00116845	0	0
STAG2	10735	broad.mit.edu	37	X	123190022	123190022	+	Missense_Mutation	SNP	A	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:123190022A>T	uc004etz.3	+	13	1580	c.1241A>T	c.(1240-1242)TAT>TTT	p.Y414F	STAG2_uc004eua.2_Missense_Mutation_p.Y414F|STAG2_uc004eub.2_Missense_Mutation_p.Y414F|STAG2_uc004euc.2_Missense_Mutation_p.Y414F|STAG2_uc004eud.2_Missense_Mutation_p.Y414F|STAG2_uc004eue.2_Missense_Mutation_p.Y414F	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	414					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						GAAAATGTCTATCATCTGGTT	0.363000													19	51					0	0	0.000958276	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125299167	125299167	+	Silent	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:125299167C>T	uc004euk.1	-	1	768	c.741G>A	c.(739-741)CCG>CCA	p.P247P		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	247										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCACATCCCTCGGACGGATGT	0.637000													11	20					0	0	0.000673444	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994856	140994856	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:140994856G>A	uc004fbt.2	+	4	1952	c.1666G>A	c.(1666-1668)GAG>AAG	p.E556K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	556							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCTCAGGGGGAGGACTCCCT	0.572000										HNSCC(15;0.026)			42	138					0	0	0.00195071	0	0
PLXNA3	55558	broad.mit.edu	37	X	153693533	153693533	+	Missense_Mutation	SNP	G	A	A			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:153693533G>A	uc004flm.2	+	11	2389	c.2216G>A	c.(2215-2217)AGC>AAC	p.S739N		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	739	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CGCTTCAACAGCAGCAGTGTG	0.652000													3	19					0	0	0.000602214	0	0
F8	2157	broad.mit.edu	37	X	154128148	154128148	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chrX:154128148C>T	uc004fmt.2	-	21	6437	c.6266G>A	c.(6265-6267)TGG>TAG	p.W2089*	F8_uc010nvi.1_Intron	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	2089	F5/8 type C 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	AACCTTGATCCAAGAAAAGGG	0.413000													4	15					0	0	0.000602214	0	0
PTPRC	5788	broad.mit.edu	37	1	198678936	198678936	+	Frame_Shift_Del	DEL	T	-	-			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr1:198678936delT	uc001gur.1	+	11	1328	c.1148delT	c.(1147-1149)ATTfs	p.I383fs	PTPRC_uc001gus.1_Frame_Shift_Del_p.I335fs|PTPRC_uc001gut.1_Frame_Shift_Del_p.I222fs|PTPRC_uc009wzf.1_Frame_Shift_Del_p.I271fs|PTPRC_uc010ppg.1_Frame_Shift_Del_p.I319fs	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	383	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AGTAAAATTATTAAAACAGAT	0.274													7	143	---	---	---	---					
IGSF9B	22997	broad.mit.edu	37	11	133790896	133790904	+	In_Frame_Del	DEL	CAGGGCGGC	-	-			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr11:133790896_133790904delCAGGGCGGC	uc001qgx.3	-	18	2947_2955	c.2716_2724delGCCGCCCTG	c.(2716-2724)GCCGCCCTGdel	p.AAL906del		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	906_908	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GCTGGGACTTCAGGGCGGCCACAGATGTG	0.675													7	121	---	---	---	---					
MIR620	693205	broad.mit.edu	37	12	116586415	116586418	+	RNA	DEL	TATA	-	-	rs10549054		TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr12:116586415_116586418delTATA	hsa-mir-620|MI0003634	-			c.42_45delTATA			MED13L_uc001tvw.2_Intron																	0						tggagatatctatatatatatata	0.196													2	4	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233697764	233697766	+	In_Frame_Del	DEL	GCA	-	-			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr2:233697764_233697766delGCA	uc002vti.3	+	24	3064_3066	c.2727_2729delGCA	c.(2725-2730)TTGCAG>TTG	p.Q917del	GIGYF2_uc002vtj.3_In_Frame_Del_p.Q938del|GIGYF2_uc002vtk.3_In_Frame_Del_p.Q917del|GIGYF2_uc002vth.3_In_Frame_Del_p.Q911del|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_In_Frame_Del_p.Q748del|GIGYF2_uc002vtq.3_In_Frame_Del_p.Q250del	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	917	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TCCGGAGGTTgcagcagcagcag	0.468													2	4	---	---	---	---					
TACC3	10460	broad.mit.edu	37	4	1742558	1742559	+	Frame_Shift_Ins	INS	-	T	T			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr4:1742558_1742559insT	uc003gdo.2	+	13	2176_2177	c.2068_2069insT	c.(2068-2070)GTTfs	p.V690fs	TACC3_uc003gdp.2_Frame_Shift_Ins_p.V330fs|TACC3_uc010ica.2_Frame_Shift_Ins_p.V111fs	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	690	Potential.					centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			TCAAGAGGAAGTTCAGAAGCAG	0.470													9	83	---	---	---	---					
PTPRZ1	5803	broad.mit.edu	37	7	121653001	121653001	+	Frame_Shift_Del	DEL	A	-	-			TCGA-D3-A2JH-06A-11D-A196-08	TCGA-D3-A2JH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	47f6121c-a022-4679-b0e3-a2f193a76a4c	79818eca-bdbb-470b-b217-e6711127bbdb	g.chr7:121653001delA	uc003vjy.2	+	12	4296	c.3901delA	c.(3901-3903)AACfs	p.N1301fs	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1301	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TTTGGAGATTAACCAGGCCCA	0.368													16	54	---	---	---	---					
