Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CAMTA1	23261	broad.mit.edu	37	1	7724488	7724488	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:7724488C>T	uc001aoi.2	+	9	2088	c.1881C>T	c.(1879-1881)GTC>GTT	p.V627V		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	627					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CCCTCCCCGTCGAGCAGAACA	0.647000													56	206					0	0	0.014410	0	0
SLC45A1	50651	broad.mit.edu	37	1	8397904	8397904	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:8397904C>T	uc001apb.2	+	6	1626	c.1626C>T	c.(1624-1626)CTC>CTT	p.L542L	SLC45A1_uc001apc.2_Silent_p.L240L	NM_001080397	NP_001073866	Q9Y2W3	S45A1_HUMAN	DNB5	542	Helical; (Potential).				carbohydrate transport	integral to membrane	symporter activity			central_nervous_system(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.0661)|all_lung(157;0.127)	all_epithelial(116;1.22e-15)|all_lung(118;0.000147)|Lung NSC(185;0.000251)|Renal(390;0.000469)|Colorectal(325;0.00578)|Breast(348;0.00686)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;3.95e-66)|GBM - Glioblastoma multiforme(8;5.93e-33)|Colorectal(212;2.86e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GGATGTTGCTCTTCTACACAG	0.557000													27	76					0	0	0.015359	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809066	18809066	+	Silent	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:18809066C>A	uc001bax.2	+	1	1643	c.1591C>A	c.(1591-1593)CGG>AGG	p.R531R	KLHDC7A_uc009vpg.2_Silent_p.R313R	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	531	Kelch 2.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGCCGTGTCCCGGGGCTGTGC	0.657000													17	60					1.56452e-12	1.64378e-12	0.007413	1	0
KIF17	57576	broad.mit.edu	37	1	21011406	21011406	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:21011406G>A	uc001bdr.3	-	10	2245	c.2127C>T	c.(2125-2127)CCC>CCT	p.P709P	KIF17_uc001bdp.3_5'UTR|KIF17_uc001bdq.3_5'UTR|KIF17_uc009vpx.2_Silent_p.P79P|KIF17_uc001bds.3_Silent_p.P709P	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	709					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TGGCCGGCAGGGGCTCAGGCT	0.672000													4	10					0	0	0.001168	0	0
HSPG2	3339	broad.mit.edu	37	1	22214554	22214554	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:22214554G>A	uc001bfj.2	-	7	620	c.580C>T	c.(580-582)CAG>TAG	p.Q194*	HSPG2_uc009vqd.2_Nonsense_Mutation_p.Q194*|HSPG2_uc009vqe.1_Silent_p.P92P	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	194	SEA.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CTTGGGAACTGGGGCACTGCA	0.647000													15	24					0	0	0.004990	0	0
FUCA1	2517	broad.mit.edu	37	1	24172603	24172603	+	Silent	SNP	G	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:24172603G>C	uc001bie.2	-	7	1266	c.1221C>G	c.(1219-1221)GTC>GTG	p.V407V		NM_000147	NP_000138	P04066	FUCO_HUMAN	fucosidase, alpha-L-1, tissue precursor	407					fucose metabolic process|glycosaminoglycan catabolic process	lysosome	alpha-L-fucosidase activity|cation binding			breast(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-24)|Colorectal(126;5.69e-08)|COAD - Colon adenocarcinoma(152;3.15e-06)|GBM - Glioblastoma multiforme(114;9.04e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|KIRC - Kidney renal clear cell carcinoma(1967;0.00342)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.144)		CAAGGTTTAAGACTCCATTTT	0.413000													14	25					0	0	0.007413	0	0
TINAGL1	64129	broad.mit.edu	37	1	32044857	32044857	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:32044857C>T	uc001bta.2	+	3	489	c.363C>T	c.(361-363)AAC>AAT	p.N121N	TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_Silent_p.N121N|TINAGL1_uc010ogj.1_Silent_p.N121N|TINAGL1_uc010ogk.1_Silent_p.N121N	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1	121					endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		ACTGGGACAACTGTAACCGTT	0.398000													33	82					0	0	0.009718	0	0
LCK	3932	broad.mit.edu	37	1	32745282	32745282	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:32745282G>A	uc001bux.2	+	10	1113	c.975G>A	c.(973-975)GTG>GTA	p.V325V	LCK_uc001buy.2_Silent_p.V325V|LCK_uc001buz.2_Silent_p.V355V|LCK_uc010ohc.1_Silent_p.V369V|LCK_uc001bva.2_Silent_p.V332V	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	325	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	GGAGTCTAGTGGATTTTCTCA	0.572000			T	TRB@	T-ALL								40	194					0	0	0.014410	0	0
BSDC1	55108	broad.mit.edu	37	1	32849430	32849430	+	Splice_Site	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:32849430C>A	uc001bvh.3	-	4	404	c.357_splice	c.e4+1	p.K119_splice	BSDC1_uc010ohg.1_Splice_Site_p.K136_splice|BSDC1_uc010ohh.1_Intron|BSDC1_uc010ohi.1_Intron|BSDC1_uc001bvg.3_Splice_Site|BSDC1_uc001bvj.2_Splice_Site_p.K15_splice|BSDC1_uc001bvi.2_Splice_Site_p.K136_splice	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b								protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TCAGTGAATACCTTGGTGCCA	0.517000													15	45					3.52763e-06	3.64217e-06	0.004990	1	0
HIVEP3	59269	broad.mit.edu	37	1	41978494	41978494	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:41978494G>A	uc001cgz.3	-	8	7611	c.6398C>T	c.(6397-6399)TCC>TTC	p.S2133F	HIVEP3_uc001cha.3_Missense_Mutation_p.S2133F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	2133	6 X 4 AA tandem repeats of S-P-X-[RK].				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CACCCACGGGGAGGCGCAGGT	0.657000													3	2					0	0	0.004672	0	0
WDR65	149465	broad.mit.edu	37	1	43675472	43675472	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:43675472C>T	uc001cip.1	+	11	1935	c.1814C>T	c.(1813-1815)TCT>TTT	p.S605F	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.S594F|WDR65_uc001ciq.1_Missense_Mutation_p.S605F	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	605										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATCTCGCATTCTGGACGCATG	0.418000													7	47					0	0	0.003080	0	0
NASP	4678	broad.mit.edu	37	1	46073706	46073706	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:46073706C>T	uc001coi.1	+	6	1225	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	NASP_uc010olq.1_Missense_Mutation_p.P338S|NASP_uc001coh.1_Missense_Mutation_p.P377S|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.P311S|NASP_uc001cok.1_Missense_Mutation_p.P258S	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	375	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					TCCAGTTCTCCCTAAGGATGG	0.502000													19	75					0	0	0.018920	0	0
PRKAA2	5563	broad.mit.edu	37	1	57157100	57157100	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:57157100T>C	uc001cyk.3	+	3	341	c.270T>C	c.(268-270)TTT>TTC	p.F90F		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	90	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						CAGATTTTTTTATGGTAATGG	0.318000													8	36					0	0	0.013537	0	0
HOOK1	51361	broad.mit.edu	37	1	60331594	60331594	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:60331594A>G	uc009wad.2	+	20	1897	c.1795A>G	c.(1795-1797)ATG>GTG	p.M599V	HOOK1_uc001czo.2_Missense_Mutation_p.M599V|HOOK1_uc001czp.2_RNA|HOOK1_uc010oor.1_Missense_Mutation_p.M557V	NM_015888	NP_056972	Q9UJC3	HOOK1_HUMAN	hook homolog 1	599	Potential.				early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|multicellular organismal development|protein transport	FHF complex|microtubule	identical protein binding			ovary(1)|breast(1)	2	all_cancers(7;0.000129)					AGATGAAGATATGAAAGCAAT	0.333000													5	59					0	0	0.001168	0	0
ABCA4	24	broad.mit.edu	37	1	94528173	94528173	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:94528173A>T	uc001dqh.2	-	13	2001	c.1897T>A	c.(1897-1899)TAC>AAC	p.Y633N	ABCA4_uc010otn.1_Missense_Mutation_p.Y633N	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	633	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TGCTGGAGGTAGATTCCAACT	0.577000													11	43					0	0	0.013537	0	0
ABCD3	5825	broad.mit.edu	37	1	94953115	94953115	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:94953115T>G	uc001dqn.3	+	11	1017	c.915T>G	c.(913-915)AAT>AAG	p.N305K	ABCD3_uc010oto.1_Missense_Mutation_p.N329K|ABCD3_uc010otp.1_Missense_Mutation_p.N232K|ABCD3_uc009wdr.2_Intron|ABCD3_uc001dqo.3_5'UTR	NM_002858	NP_002849	P28288	ABCD3_HUMAN	ATP-binding cassette, sub-family D, member 3	305	ABC transmembrane type-1.				peroxisomal long-chain fatty acid import|peroxisome organization	cytosol|integral to peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(1)	1		all_lung(203;0.000434)|Lung NSC(277;0.0019)		all cancers(265;0.0261)|Epithelial(280;0.165)		ACCTACATAATTTCATTTTGT	0.299000													5	22					0	0	0.001984	0	0
KIAA1324	57535	broad.mit.edu	37	1	109716108	109716108	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:109716108C>T	uc001dwq.2	+	7	845	c.709C>T	c.(709-711)CGA>TGA	p.R237*	KIAA1324_uc009wex.1_Nonsense_Mutation_p.R237*|KIAA1324_uc009wey.2_Nonsense_Mutation_p.R237*|KIAA1324_uc010ovg.1_Nonsense_Mutation_p.R135*	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	237	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		GGAGCTAAATCGAGGCAATAA	0.438000													13	48					0	0	0.004007	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144912150	144912150	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:144912150G>A	uc001elw.3	-	15	2416	c.2125C>T	c.(2125-2127)CTT>TTT	p.L709F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.L775F|PDE4DIP_uc001emc.1_Missense_Mutation_p.L709F|PDE4DIP_uc001emd.1_Missense_Mutation_p.L709F|PDE4DIP_uc001emb.1_Missense_Mutation_p.L872F|PDE4DIP_uc001eme.1_Missense_Mutation_p.L238F|PDE4DIP_uc001emf.1_Missense_Mutation_p.L494F	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	709					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TGTTTTCCAAGACAGCCAGTG	0.403000			T	PDGFRB	MPD								11	110					0	0	0.010729	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144952267	144952267	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:144952267C>A	uc001elw.3	-	4	743	c.452G>T	c.(451-453)TGG>TTG	p.W151L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.W217L|PDE4DIP_uc001emc.1_Missense_Mutation_p.W151L|PDE4DIP_uc001emd.1_Missense_Mutation_p.W151L|PDE4DIP_uc001emg.1_Missense_Mutation_p.W151L|PDE4DIP_uc001emh.2_Missense_Mutation_p.W288L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	151					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TACATCTTCCCAGTTTTTGGT	0.542000			T	PDGFRB	MPD								8	78					1.58986e-06	1.64504e-06	0.008291	1	0
FMO5	2330	broad.mit.edu	37	1	146658593	146658593	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:146658593C>T	uc001epi.2	-	9	1877	c.1488G>A	c.(1486-1488)AGG>AGA	p.R496R	FMO5_uc001eph.3_Intron|FMO5_uc001epj.2_3'UTR	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	496						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					TCAGAGGCTTCCTGATGCGAT	0.453000													22	37					0	0	0.016522	0	0
BCL9	607	broad.mit.edu	37	1	147091879	147091879	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:147091879C>G	uc001epq.2	+	8	2658	c.1918C>G	c.(1918-1920)CAG>GAG	p.Q640E	BCL9_uc010ozr.1_Missense_Mutation_p.Q566E	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	640	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					GGCAGAGAAACAGCTGGGTCT	0.597000			T	IGH@|IGL@	B-ALL								9	59					0	0	0.004482	0	0
CGN	57530	broad.mit.edu	37	1	151495982	151495982	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:151495982C>T	uc009wmw.2	+	6	1357	c.1213C>T	c.(1213-1215)CGA>TGA	p.R405*		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	399	Interacts with ZO-2.|Glu-rich.|Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGAGTGCAGCCGACTGCAGGA	0.612000													24	23					0	0	0.016522	0	0
FLG2	388698	broad.mit.edu	37	1	152325496	152325496	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:152325496G>A	uc001ezw.3	-	3	4839	c.4766C>T	c.(4765-4767)TCA>TTA	p.S1589L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1589							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGTCTGTGTGAGCCCCCTGA	0.512000													153	160					0	0	0.014410	0	0
CRNN	49860	broad.mit.edu	37	1	152382652	152382652	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:152382652C>T	uc001ezx.2	-	3	980	c.906G>A	c.(904-906)GTG>GTA	p.V302V		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	302	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCTGCTCCACGGTCTGGG	0.612000													176	185					0	0	0.014410	0	0
KPRP	448834	broad.mit.edu	37	1	152733646	152733646	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:152733646C>T	uc001fal.1	+	2	1640	c.1582C>T	c.(1582-1584)CCC>TCC	p.P528S		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	528						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CACCGAAGCTCCCTACTGTGG	0.607000													11	52					0	0	0.020292	0	0
S100A9	6280	broad.mit.edu	37	1	153333202	153333202	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:153333202A>T	uc001fbq.2	+	3	276	c.233A>T	c.(232-234)GAG>GTG	p.E78V		NM_002965	NP_002956	P06702	S10A9_HUMAN	S100 calcium-binding protein A9	78	2; high affinity (Probable).|EF-hand 2.			E->Q: Loss of resistance to bacterial invasion; when associated with Q-36.	cell-cell signaling	cytoplasm|cytoskeleton|nucleus|plasma membrane	calcium ion binding|protein binding|signal transducer activity				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCTTCGAGGAGTTCATCATG	0.562000													26	58					0	0	0.008361	0	0
MIR555	693140	broad.mit.edu	37	1	155316192	155316192	+	RNA	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:155316192G>A	hsa-mir-555|MI0003561	-			c.45G>A			RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Silent_p.D2624D|ASH1L_uc009wqq.2_Silent_p.D2629D																	0						CAGGCCTTGGGTCACACTGCT	0.478000													35	183					0	0	0.006999	0	0
FCRL4	83417	broad.mit.edu	37	1	157548609	157548609	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:157548609G>A	uc001fqw.2	-	9	1447	c.1311C>T	c.(1309-1311)TCC>TCT	p.S437S	FCRL4_uc010phy.1_Intron	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	437	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				AGATGGAATGGGAGGACTCTC	0.537000													12	27					0	0	0.003163	0	0
FCRL2	79368	broad.mit.edu	37	1	157740251	157740251	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:157740251T>C	uc001fre.2	-	3	317	c.258A>G	c.(256-258)GGA>GGG	p.G86G	FCRL2_uc001frd.2_5'Flank|FCRL2_uc010phz.1_Silent_p.G86G|FCRL2_uc009wsp.2_Silent_p.G86G|FCRL2_uc010pia.1_Silent_p.G86G	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	86	Ig-like C2-type 1.|Extracellular (Potential).				cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GAAAGAGTTGTCCTTTGGTAC	0.383000													32	65					0	0	0.019004	0	0
CD1E	913	broad.mit.edu	37	1	158324176	158324176	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:158324176C>T	uc001fse.2	+	2	307	c.68C>T	c.(67-69)GCT>GTT	p.A23V	CD1E_uc010pid.1_Missense_Mutation_p.A21V|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.A23V|CD1E_uc001fsk.2_Missense_Mutation_p.A23V|CD1E_uc001fsj.2_Missense_Mutation_p.A23V|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.A23V|CD1E_uc001fry.2_Missense_Mutation_p.A23V|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.A23V|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Missense_Mutation_p.A23V|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	23					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCTCCCCAGGCTCTACAATCC	0.507000													22	143					0	0	0.021523	0	0
OR10X1	128367	broad.mit.edu	37	1	158549333	158549333	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:158549333G>A	uc010pin.1	-	1	357	c.357C>T	c.(355-357)TTC>TTT	p.F119F		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTCCCAAGAAGAAGCACATCT	0.473000													13	58					0	0	0.020292	0	0
SPTA1	6708	broad.mit.edu	37	1	158632604	158632604	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:158632604G>A	uc001fst.1	-	17	2551	c.2352C>T	c.(2350-2352)ACC>ACT	p.T784T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	784	Spectrin 8.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCTTCTTTCGGGTGGCCAGTG	0.473000													6	38					0	0	0.001984	0	0
C1orf226	400793	broad.mit.edu	37	1	162353105	162353105	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:162353105G>A	uc001gby.2	+	2	623	c.451G>A	c.(451-453)GGG>AGG	p.G151R	C1orf226_uc010pkt.1_Missense_Mutation_p.G194R	NM_001085375	NP_001078844	A1L170	CA226_HUMAN	hypothetical protein LOC400793 isoform 2	151										ovary(1)	1						TCTGGAGTATGGGACAGAGCC	0.607000													7	12					0	0	0.001984	0	0
ILDR2	387597	broad.mit.edu	37	1	166904697	166904697	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:166904697C>T	uc001gdx.1	-	6	777	c.721G>A	c.(721-723)GCA>ACA	p.A241T		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	241	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						GCCTTTGCTGCTTTCCCTGCT	0.577000													4	29					0	0	0.001168	0	0
SLC9A11	284525	broad.mit.edu	37	1	173503740	173503740	+	Silent	SNP	T	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:173503740T>G	uc001giz.2	-	16	2280	c.1857A>C	c.(1855-1857)ATA>ATC	p.I619I	SLC9A11_uc009wwe.2_Silent_p.I177I|SLC9A11_uc010pmq.1_Intron	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	619	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						GATAAATATATATCAAATTTA	0.254000													9	44					0	0	0.004482	0	0
C1orf125	126859	broad.mit.edu	37	1	179460760	179460760	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:179460760C>T	uc001gmo.2	+	19	2306	c.2179C>T	c.(2179-2181)CTA>TTA	p.L727L	C1orf125_uc009wxg.2_RNA|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.L727L|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	727											0						AGACTGTCTCCTAAAGTTGGA	0.398000													21	101					0	0	0.012319	0	0
HMCN1	83872	broad.mit.edu	37	1	186106752	186106752	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:186106752C>T	uc001grq.1	+	88	13934	c.13705C>T	c.(13705-13707)CAA>TAA	p.Q4569*	HMCN1_uc001grs.1_Nonsense_Mutation_p.Q138*	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4569	TSP type-1 1.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GAAGCCCTGCCAAGGTTCAGA	0.478000													27	22					0	0	0.009535	0	0
RCOR3	55758	broad.mit.edu	37	1	211462663	211462663	+	Silent	SNP	A	T	T	rs150197033		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:211462663A>T	uc001hig.2	+	7	859	c.690A>T	c.(688-690)GCA>GCT	p.A230A	RCOR3_uc010psv.1_RNA|RCOR3_uc001hie.2_Silent_p.A288A|RCOR3_uc010psw.1_Silent_p.A288A|RCOR3_uc001hif.2_Silent_p.A288A	NM_018254	NP_060724	Q9P2K3	RCOR3_HUMAN	REST corepressor 3 isoform d	230					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.00961)|all cancers(67;0.0999)|Epithelial(68;0.171)		ATGTGGTAGCAGTTTCCTGTA	0.418000													17	56					0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	1	237167613	237167613	+	RNA	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:237167613C>G	uc001hyk.1	-	1		c.106G>C								Homo sapiens metallothionein 1H-like protein mRNA, complete cds.																		ACTTTTTGCACTTGCAGGAGC	0.627000													10	51					0	0	0.020292	0	0
SMYD3	64754	broad.mit.edu	37	1	245927409	245927409	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:245927409C>T	uc001ibl.2	-	11	1214	c.1119G>A	c.(1117-1119)GTG>GTA	p.V373V	SMYD3_uc001ibk.2_Silent_p.V314V|SMYD3_uc001ibi.2_Missense_Mutation_p.D186N|SMYD3_uc001ibj.2_Silent_p.V184V	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	373						cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		CAACTTTCATCACTTGAACCC	0.483000													17	87					0	0	0.010504	0	0
OR2C3	81472	broad.mit.edu	37	1	247694951	247694951	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:247694951G>A	uc009xgy.2	-	2	1225	c.863C>T	c.(862-864)CCA>CTA	p.P288L	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GTAAATAAGTGGGTTCAGCGC	0.532000													34	46					0	0	0.006999	0	0
C1orf150	148823	broad.mit.edu	37	1	247737618	247737618	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr1:247737618G>A	uc001idf.2	+	5	387	c.342G>A	c.(340-342)AGG>AGA	p.R114R	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	114											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CCCTTCTTAGGACTTCTGTTA	0.443000													15	54					0	0	0.020292	0	0
AKR1C3	8644	broad.mit.edu	37	10	5139671	5139671	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:5139671G>A	uc001ihr.2	+	3	481	c.298G>A	c.(298-300)GAA>AAA	p.E100K	AKR1C3_uc010qap.1_Missense_Mutation_p.E77K|AKR1C3_uc010qaq.1_Missense_Mutation_p.E100K|AKR1C3_uc001ihu.2_Missense_Mutation_p.E100K	NM_003739	NP_003730	P42330	AK1C3_HUMAN	aldo-keto reductase family 1, member C3	100					prostaglandin metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (A-specific) activity|indanol dehydrogenase activity|prostaglandin-F synthase activity|testosterone 17-beta-dehydrogenase (NAD+) activity|testosterone 17-beta-dehydrogenase (NADP+) activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			skin(1)	1					Dimethyl sulfoxide(DB01093)|NADH(DB00157)	ACCAGCCTTGGAAAACTCACT	0.398000													37	60					0	0	0.010771	0	0
FBXO18	84893	broad.mit.edu	37	10	5953047	5953047	+	Silent	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:5953047G>T	uc001iis.2	+	6	1262	c.1167G>T	c.(1165-1167)GTG>GTT	p.V389V	FBXO18_uc001iir.2_Silent_p.V315V|FBXO18_uc009xig.2_Silent_p.V315V|FBXO18_uc001iit.2_Silent_p.V440V	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	389					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GCATAGCCGTGCTTCTCTACG	0.572000													53	73					1.85257e-25	1.96373e-25	0.014410	1	0
FBXO18	84893	broad.mit.edu	37	10	5969458	5969458	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:5969458G>A	uc001iis.2	+	19	2878	c.2783G>A	c.(2782-2784)CGT>CAT	p.R928H	FBXO18_uc001iir.2_Missense_Mutation_p.R871H|FBXO18_uc009xig.2_Missense_Mutation_p.R854H|FBXO18_uc001iit.2_Missense_Mutation_p.R979H	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	928					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						GCCAAGAAGCGTCTCATCATG	0.388000													35	69					0	0	0.014410	0	0
KIAA1217	56243	broad.mit.edu	37	10	24820871	24820871	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:24820871G>A	uc001iru.3	+	15	3598	c.3195G>A	c.(3193-3195)ACG>ACA	p.T1065T	KIAA1217_uc001irs.2_Silent_p.T985T|KIAA1217_uc001irt.3_Silent_p.T1030T|KIAA1217_uc010qcy.1_Silent_p.T1029T|KIAA1217_uc010qcz.1_Silent_p.T1030T|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.T748T|KIAA1217_uc001irz.2_Silent_p.T748T|KIAA1217_uc001irx.2_Silent_p.T748T|KIAA1217_uc001iry.2_Silent_p.T748T	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1065					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TCACCACCACGAGGTCAGGCG	0.577000													37	24					0	0	0.006230	0	0
C10orf50	645528	broad.mit.edu	37	10	26880239	26880239	+	RNA	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:26880239G>A	uc001ist.2	+	2		c.474G>A				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						TCCCTCTCAGGACCTATAAAA	0.423000													30	25					0	0	0.015359	0	0
SVIL	6840	broad.mit.edu	37	10	29813449	29813449	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:29813449C>T	uc001iut.1	-	14	3291	c.2538G>A	c.(2536-2538)ATG>ATA	p.M846I	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Missense_Mutation_p.M420I	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	846					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				AGCGAGCGTTCATTCTCCTCT	0.468000													41	48					0	0	0.006999	0	0
FZD8	8325	broad.mit.edu	37	10	35929025	35929025	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:35929025C>T	uc001iyz.1	-	1	1338	c.1333G>A	c.(1333-1335)GCG>ACG	p.A445T		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	445	Helical; Name=4; (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						ACAAGCCACGCGGCCAGGTGG	0.652000													5	10					0	0	0.014758	0	0
RTKN2	219790	broad.mit.edu	37	10	64022432	64022432	+	Missense_Mutation	SNP	G	A	A	rs138538612		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:64022432G>A	uc001jlw.2	-	2	306	c.209C>T	c.(208-210)TCG>TTG	p.S70L	ZNF365_uc001jly.3_Intron|RTKN2_uc001jlx.2_Missense_Mutation_p.S70L	NM_145307	NP_660350	Q8IZC4	RTKN2_HUMAN	rhotekin 2	70	Potential.				signal transduction	intracellular					0	Prostate(12;0.0297)|all_hematologic(501;0.215)					CTGTAGCTCCGATGTATAGGC	0.363000													37	44					0	0	0.008740	0	0
CYP2C18	1562	broad.mit.edu	37	10	96443650	96443650	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:96443650G>A	uc001kjv.3	+	1	400	c.74G>A	c.(73-75)GGA>GAA	p.G25E	CYP2C18_uc001kjw.3_Missense_Mutation_p.G25E	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	25					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CAGAGCTCTGGAAGAGGGAGG	0.483000													27	26					0	0	0.005443	0	0
CC2D2B	387707	broad.mit.edu	37	10	97779486	97779486	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:97779486A>G	uc001kll.2	+	8	884	c.685A>G	c.(685-687)ACA>GCA	p.T229A	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Missense_Mutation_p.T229A|uc009xvb.1_RNA	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	229										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		ACAAAATAATACACCAATGGC	0.343000													61	71					0	0	0.014410	0	0
GOT1	2805	broad.mit.edu	37	10	101163500	101163501	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr10:101163500_101163501GG>AA	uc001kpr.2	-	6	981_982	c.773_774CC>TT	c.(772-774)TCC>TTT	p.S258F	GOT1_uc009xwh.2_RNA|GOT1_uc001kpq.1_Intron	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	258					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CGAAGTTCTTGGAGAAGGACTG	0.554000													32	27					0	0	0.004672	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651347	1651347	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:1651347G>C	uc001lty.2	+	1	315	c.277G>C	c.(277-279)GGG>CGG	p.G93R		NM_001001480	NP_001001480	Q701N2	KRA55_HUMAN	keratin associated protein 5-5	93	8 X 4 AA repeats of C-C-X-P.					keratin filament				lung(1)	1		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		TGGCTCTTGCGGGGGCTCCAA	0.627000													73	138					0	0	0.014410	0	0
ZNF195	7748	broad.mit.edu	37	11	3381134	3381134	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:3381134G>A	uc001lxt.2	-	6	1282	c.1104C>T	c.(1102-1104)AGC>AGT	p.S368S	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.S345S|ZNF195_uc001lxs.2_Silent_p.S296S|ZNF195_uc010qxr.1_Silent_p.S349S|ZNF195_uc009ydz.2_Silent_p.S323S|ZNF195_uc001lxu.2_Silent_p.S300S	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	368				Missing (in Ref. 2; BAD18466).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		GATTAGAAAGGCTTGAGCAAG	0.423000													25	94					0	0	0.021523	0	0
OR52R1	119695	broad.mit.edu	37	11	4825016	4825016	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:4825016G>A	uc010qym.1	-	1	832	c.832C>T	c.(832-834)CGT>TGT	p.R278C		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	199	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATTCCCACGACTTATGCTT	0.493000													14	73					0	0	0.016723	0	0
OR52E6	390078	broad.mit.edu	37	11	5862252	5862252	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:5862252G>A	uc010qzq.1	-	1	876	c.876C>T	c.(874-876)ATC>ATT	p.I292I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGACCCCATAGATTACAGGAT	0.423000													11	42					0	0	0.016723	0	0
SCUBE2	57758	broad.mit.edu	37	11	9069050	9069050	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:9069050G>A	uc001mhh.1	-	15	1848	c.1768C>T	c.(1768-1770)CGC>TGC	p.R590C	SCUBE2_uc001mhi.1_Missense_Mutation_p.R619C|SCUBE2_uc001mhj.1_Missense_Mutation_p.R464C	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	590						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		CTGAGCGTGCGGATGGCTTTA	0.562000													6	43					0	0	0.006214	0	0
NELL1	4745	broad.mit.edu	37	11	21581830	21581830	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:21581830C>T	uc001mqe.2	+	17	2035	c.1882C>T	c.(1882-1884)CCC>TCC	p.P628S	NELL1_uc001mqf.2_Missense_Mutation_p.P581S|NELL1_uc009yid.2_Missense_Mutation_p.P656S|NELL1_uc010rdo.1_Missense_Mutation_p.P571S|NELL1_uc010rdp.1_Missense_Mutation_p.P341S|NELL1_uc001mqh.2_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	628	EGF-like 6; calcium-binding (Potential).				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						CCCCTCTGGGCCCTCCTGCTC	0.547000													36	35					0	0	0.005524	0	0
PRRG4	79056	broad.mit.edu	37	11	32860464	32860465	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:32860464_32860465AC>TT	uc001mtx.2	+	4	557_558	c.304_305AC>TT	c.(304-306)ACC>TTC	p.T102F		NM_024081	NP_076986	Q9BZD6	TMG4_HUMAN	proline rich Gla (G-carboxyglutamic acid) 4	102	Extracellular (Potential).					extracellular region|Golgi apparatus|integral to membrane	calcium ion binding				0	Breast(20;0.206)					TAAAGGACCAACCACAAAATCA	0.297000													4	30					0	0	0.004672	0	0
CHRM4	1132	broad.mit.edu	37	11	46406672	46406672	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:46406672C>T	uc001nct.1	-	1	1436	c.1436G>A	c.(1435-1437)AGG>AAG	p.R479K		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	479	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	GCCTGCCTACCTGGCAGTGCC	0.597000													7	9					0	0	0.001984	0	0
PTPRJ	5795	broad.mit.edu	37	11	48157689	48157689	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:48157689C>T	uc001ngp.3	+	9	2069	c.1714C>T	c.(1714-1716)CAT>TAT	p.H572Y	PTPRJ_uc010rhr.1_Missense_Mutation_p.H17Y	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	572	Extracellular (Potential).|Fibronectin type-III 6.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GTATGTCTACCATTTAGTCAT	0.512000													12	38					0	0	0.016723	0	0
OR4P4	81300	broad.mit.edu	37	11	55406281	55406281	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:55406281G>A	uc010rij.1	+	1	448	c.448G>A	c.(448-450)GGA>AGA	p.G150R		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TTGTACTGGGGGATTTATACA	0.428000													7	45					0	0	0.001984	0	0
OR5D14	219436	broad.mit.edu	37	11	55563665	55563665	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:55563665A>G	uc010rim.1	+	1	634	c.634A>G	c.(634-636)ACA>GCA	p.T212A		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGAGATGTGTACACTACTGAT	0.463000													16	113					0	0	0.004007	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947173	57947173	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:57947173T>C	uc001nmj.2	+	3	573	c.257T>C	c.(256-258)CTG>CCG	p.L86P		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				GCAGTGCTGCTGGAGCATGGG	0.532000													33	47					0	0	0.010818	0	0
OR4D11	219986	broad.mit.edu	37	11	59271951	59271951	+	Silent	SNP	G	A	A	rs116174674	by1000genomes	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:59271951G>A	uc001noa.1	+	1	903	c.903G>A	c.(901-903)CTG>CTA	p.L301L		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGAGAAGACTGAAGAGAAGAC	0.333000													7	29					0	0	0.004482	0	0
TIGD3	220359	broad.mit.edu	37	11	65124274	65124274	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:65124274G>A	uc001odo.3	+	2	1158	c.995G>A	c.(994-996)GGG>GAG	p.G332E		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	332	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						GCCGAGGCCGGGGCAGGCATC	0.637000													9	13					0	0	0.004482	0	0
NPAS4	266743	broad.mit.edu	37	11	66191724	66191724	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:66191724C>T	uc001ohx.1	+	7	1539	c.1363C>T	c.(1363-1365)CTT>TTT	p.L455F	NPAS4_uc010rpc.1_Missense_Mutation_p.L245F	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	455					transcription, DNA-dependent		DNA binding|signal transducer activity				0						ATCCAGCACTCTTCAAGAACA	0.577000													38	174					0	0	0.006999	0	0
ANO1	55107	broad.mit.edu	37	11	70026114	70026114	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:70026114C>T	uc001opj.2	+	23	2660	c.2355C>T	c.(2353-2355)ATC>ATT	p.I785I	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Silent_p.I494I|ANO1_uc010rql.1_5'UTR	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	785	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						CCCCAGGAATCTGGTACAATA	0.522000													20	46					0	0	0.008871	0	0
SYTL2	54843	broad.mit.edu	37	11	85445276	85445276	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:85445276T>C	uc010rth.1	-	6	1369	c.1093A>G	c.(1093-1095)AAA>GAA	p.K365E	SYTL2_uc010rtg.1_Missense_Mutation_p.K366E|SYTL2_uc010rti.1_Missense_Mutation_p.K365E|SYTL2_uc010rtj.1_Missense_Mutation_p.K317E|SYTL2_uc001pbf.3_Missense_Mutation_p.K365E|SYTL2_uc010rtf.1_Missense_Mutation_p.K223E	NM_001162951	NP_001156423	Q9HCH5	SYTL2_HUMAN	synaptotagmin-like 2 isoform g	365					intracellular protein transport|vesicle docking involved in exocytosis	exocytic vesicle|extrinsic to plasma membrane|melanosome|membrane fraction	neurexin binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding|Rab GTPase binding			ovary(2)|large_intestine(1)	3		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)		KIRC - Kidney renal clear cell carcinoma(183;0.202)|Kidney(183;0.237)		ATTCCATTTTTCAATCTGTCA	0.438000													12	78					0	0	0.020292	0	0
SIK3	23387	broad.mit.edu	37	11	116747031	116747031	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:116747031G>A	uc001ppy.2	-	8	895	c.859C>T	c.(859-861)CTG>TTG	p.L287L	SIK3_uc001ppz.2_Silent_p.L186L|SIK3_uc001pqa.2_Silent_p.L287L	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	287	UBA.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TCCTCATTCAGGGGGTCCACC	0.468000													22	71					0	0	0.004656	0	0
TECTA	7007	broad.mit.edu	37	11	121000698	121000698	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:121000698C>T	uc010rzo.1	+	9	2719	c.2719C>T	c.(2719-2721)CGA>TGA	p.R907*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	907	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAAGTTTTATCGAAGCCGCTC	0.562000													5	45					0	0	0.014758	0	0
ACRV1	56	broad.mit.edu	37	11	125547954	125547954	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:125547954C>T	uc001qcs.2	-	2	558	c.291G>A	c.(289-291)GAG>GAA	p.E97E	ACRV1_uc001qck.2_Intron|ACRV1_uc001qcl.2_Intron|ACRV1_uc001qcm.2_Intron|ACRV1_uc001qcn.2_Silent_p.E42E|ACRV1_uc001qco.2_Intron|ACRV1_uc001qcp.2_Intron|ACRV1_uc001qcq.2_Intron|ACRV1_uc001qcr.2_Silent_p.E97E	NM_001612	NP_001603	P26436	ASPX_HUMAN	acrosomal vesicle protein 1 isoform a precursor	97	4 X 4 AA repeats of S-G-E-H.				multicellular organismal development	acrosomal vesicle					0	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0179)|Lung NSC(97;0.0185)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0713)		TCGCAGCGGGCTCACCTGAAG	0.532000													6	43					0	0	0.001168	0	0
CDON	50937	broad.mit.edu	37	11	125891409	125891409	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:125891409G>C	uc009zbw.2	-	3	211	c.83C>G	c.(82-84)GCA>GGA	p.A28G	CDON_uc001qdc.3_Missense_Mutation_p.A28G|CDON_uc001qdd.3_RNA|CDON_uc009zbx.2_Missense_Mutation_p.A28G	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	28	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		AAAATAAGGTGCCAAGTCTAC	0.428000													12	14					0	0	0.003163	0	0
BARX2	8538	broad.mit.edu	37	11	129306737	129306737	+	Silent	SNP	C	T	T	rs149011396	byFrequency	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:129306737C>T	uc001qfc.3	+	2	329	c.279C>T	c.(277-279)ATC>ATT	p.I93I		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	93											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCCCGGGAATCGCCCAGGCAC	0.677000													28	97					0	0	0.009535	0	0
PRDM10	56980	broad.mit.edu	37	11	129814664	129814664	+	Splice_Site	SNP	A	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr11:129814664A>C	uc001qfm.2	-	6	994	c.762_splice	c.e6+1	p.K254_splice	PRDM10_uc001qfj.2_Splice_Site_p.K168_splice|PRDM10_uc001qfk.2_Splice_Site_p.K168_splice|PRDM10_uc001qfl.2_Splice_Site_p.K168_splice|PRDM10_uc010sbx.1_Splice_Site_p.K168_splice|PRDM10_uc001qfn.2_Splice_Site_p.K254_splice|PRDM10_uc009zct.1_Splice_Site_p.K286_splice	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		AGCATAAATTACCTTGAGGTG	0.512000													30	68					0	0	0.012213	0	0
LRTM2	654429	broad.mit.edu	37	12	1943759	1943759	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:1943759G>A	uc001qjt.2	+	5	1791	c.985G>A	c.(985-987)GCT>ACT	p.A329T	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.A329T|LRTM2_uc010sdx.1_Missense_Mutation_p.A329T|LRTM2_uc001qjv.2_Missense_Mutation_p.A91T	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	329	Helical; (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GGTGGTGGCCGCTGCCTATGG	0.662000													3	62					0	0	0.009096	0	0
CACNA1C	775	broad.mit.edu	37	12	2714268	2714268	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:2714268G>A	uc009zdu.1	+	24	3355	c.3042G>A	c.(3040-3042)GTG>GTA	p.V1014V	CACNA1C_uc009zdv.1_Silent_p.V991V|CACNA1C_uc001qkb.2_Silent_p.V994V|CACNA1C_uc001qkc.2_Silent_p.V994V|CACNA1C_uc001qke.2_Silent_p.V994V|CACNA1C_uc001qkf.2_Silent_p.V994V|CACNA1C_uc001qjz.2_Silent_p.V994V|CACNA1C_uc001qkd.2_Silent_p.V994V|CACNA1C_uc001qkg.2_Silent_p.V994V|CACNA1C_uc009zdw.1_Silent_p.V994V|CACNA1C_uc001qkh.2_Silent_p.V994V|CACNA1C_uc001qkl.2_Silent_p.V1014V|CACNA1C_uc001qkn.2_Silent_p.V994V|CACNA1C_uc001qko.2_Silent_p.V1014V|CACNA1C_uc001qkp.2_Silent_p.V994V|CACNA1C_uc001qkr.2_Silent_p.V994V|CACNA1C_uc001qku.2_Silent_p.V994V|CACNA1C_uc001qkq.2_Silent_p.V994V|CACNA1C_uc001qks.2_Silent_p.V994V|CACNA1C_uc001qkt.2_Silent_p.V994V|CACNA1C_uc001qka.1_Silent_p.V529V|CACNA1C_uc001qki.1_Silent_p.V730V|CACNA1C_uc001qkj.1_Silent_p.V730V|CACNA1C_uc001qkk.1_Silent_p.V730V|CACNA1C_uc001qkm.1_Silent_p.V730V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1014	III.|Helical; Name=S4 of repeat III; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TCAATGTCGTGAAGATCTTGC	0.557000													18	45					0	0	0.018920	0	0
DYRK4	8798	broad.mit.edu	37	12	4702206	4702206	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:4702206G>A	uc001qmx.2	+	4	317	c.157G>A	c.(157-159)GAA>AAA	p.E53K	DYRK4_uc009zeh.1_Missense_Mutation_p.E168K|DYRK4_uc001qmy.1_Missense_Mutation_p.E53K	NM_003845	NP_003836	Q9NR20	DYRK4_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	53						Golgi apparatus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|skin(1)	3			Colorectal(7;0.103)			GTCTCCATATGAACAAAGTGA	0.483000													40	71					0	0	0.008740	0	0
SCNN1A	6337	broad.mit.edu	37	12	6483883	6483883	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:6483883C>T	uc001qnx.2	-	2	356	c.67G>A	c.(67-69)GGG>AGG	p.G23R	SCNN1A_uc001qnw.2_Missense_Mutation_p.G82R|SCNN1A_uc010sfb.1_Missense_Mutation_p.G46R|LTBR_uc010sfc.1_5'Flank	NM_001038	NP_001029	P37088	SCNNA_HUMAN	sodium channel, nonvoltage-gated 1 alpha isoform	23	Cytoplasmic (By similarity).				excretion|response to stimulus|sensory perception of taste	apical plasma membrane	WW domain binding				0					Amiloride(DB00594)|Triamterene(DB00384)	CGCTTGTTCCCCTTCATGAGC	0.662000													14	41					0	0	0.020292	0	0
MLF2	8079	broad.mit.edu	37	12	6859156	6859156	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:6859156C>G	uc010sfi.1	-	7	480	c.417G>C	c.(415-417)AGG>AGC	p.R139S	MLF2_uc001qqp.2_Missense_Mutation_p.R139S|MLF2_uc009zey.1_Missense_Mutation_p.R139S	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	139					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						CCCGAACAGTCCTCCGTGTCT	0.587000													9	77					0	0	0.008291	0	0
C1R	715	broad.mit.edu	37	12	7188537	7188537	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:7188537C>T	uc010sfy.1	-	10	1476	c.1417G>A	c.(1417-1419)GGC>AGC	p.G473S		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	473	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGAAGTTGCCCATCTTGGCT	0.637000													3	17					0	0	0.009096	0	0
CD163	9332	broad.mit.edu	37	12	7651747	7651747	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:7651747C>T	uc001qsz.3	-	4	623	c.495G>A	c.(493-495)GGG>GGA	p.G165G	CD163_uc001qta.3_Silent_p.G165G|CD163_uc009zfw.2_Silent_p.G165G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	165	SRCR 2.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AACACATATTCCCTCCACGCG	0.403000													78	214					0	0	0.014410	0	0
PRB3	5544	broad.mit.edu	37	12	11420548	11420548	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:11420548C>T	uc001qzs.2	-	3	673	c.635G>A	c.(634-636)GGA>GAA	p.G212E	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	212	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			GGACTGGTTTCCTCCTTGTGG	0.622000													96	333					0	0	0.014410	0	0
DUSP16	80824	broad.mit.edu	37	12	12640061	12640061	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:12640061G>A	uc001rao.1	-	5	1224	c.592C>T	c.(592-594)CCT>TCT	p.P198S	DUSP16_uc001ran.1_Missense_Mutation_p.P50S	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	198					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		ATAAAGTCAGGCTTTGGACAG	0.423000													34	113					0	0	0.021022	0	0
NELL2	4753	broad.mit.edu	37	12	45168628	45168628	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:45168628C>T	uc001rog.2	-	9	1491	c.896G>A	c.(895-897)GGA>GAA	p.G299E	NELL2_uc001rof.3_Missense_Mutation_p.G298E|NELL2_uc001roh.2_Missense_Mutation_p.G299E|NELL2_uc009zkd.2_Missense_Mutation_p.G298E|NELL2_uc010skz.1_Missense_Mutation_p.G349E|NELL2_uc010sla.1_Missense_Mutation_p.G322E|NELL2_uc001roi.1_Missense_Mutation_p.G299E|NELL2_uc010slb.1_Missense_Mutation_p.G298E|NELL2_uc001roj.2_Missense_Mutation_p.G299E	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	299	VWFC 1.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CTGGATGGTTCCATTCTGAAA	0.353000											OREG0021741	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	39					0	0	0.008291	0	0
HOXC11	3227	broad.mit.edu	37	12	54367468	54367468	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:54367468C>T	uc001sem.2	+	1	559	c.443C>T	c.(442-444)CCT>CTT	p.P148L		NM_014212	NP_055027	O43248	HXC11_HUMAN	homeobox C11	148					endoderm development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCGTCCTGCCTCAAGCCTTC	0.682000			T	NUP98	AML								41	96					0	0	0.010771	0	0
KIAA0748	9840	broad.mit.edu	37	12	55356925	55356925	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:55356925G>A	uc001sgn.3	-	9	867	c.757C>T	c.(757-759)CAC>TAC	p.H253Y	KIAA0748_uc001sgl.3_Missense_Mutation_p.H115Y|KIAA0748_uc001sgm.3_5'UTR|KIAA0748_uc010spb.1_5'UTR|KIAA0748_uc010spc.1_Missense_Mutation_p.H115Y|KIAA0748_uc010spd.1_Missense_Mutation_p.H253Y|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	253										ovary(1)|central_nervous_system(1)	2						CAGAACATGTGGGATGGTGTG	0.512000													3	31					0	0	0.009096	0	0
OR6C74	254783	broad.mit.edu	37	12	55641111	55641111	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:55641111G>A	uc010spg.1	+	1	40	c.40G>A	c.(40-42)GGA>AGA	p.G14R		NM_001005490	NP_001005490	A6NCV1	O6C74_HUMAN	olfactory receptor, family 6, subfamily C,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TATTCTTCTTGGACTGACAGA	0.338000													35	55					0	0	0.008740	0	0
OR6C76	390326	broad.mit.edu	37	12	55820527	55820527	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:55820527G>A	uc010spm.1	+	1	490	c.490G>A	c.(490-492)GAT>AAT	p.D164N		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTACAGCTGGATTTCTGTGA	0.453000													52	60					0	0	0.014410	0	0
SLC39A5	283375	broad.mit.edu	37	12	56630755	56630755	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:56630755C>T	uc010sqj.1	+	11	1505	c.1248C>T	c.(1246-1248)ACC>ACT	p.T416T	SLC39A5_uc010sqk.1_Silent_p.T416T	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	416	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GCCTCAGTACCACCTTAGCGG	0.582000													136	205					0	0	0.014410	0	0
CNPY2	10330	broad.mit.edu	37	12	56708919	56708919	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:56708919C>G	uc001sku.1	-	2	624	c.83G>C	c.(82-84)TGT>TCT	p.C28S	CNPY2_uc001skv.2_Missense_Mutation_p.C28S	NM_014255	NP_055070	Q9Y2B0	CNPY2_HUMAN	canopy 2 homolog precursor	28	Saposin B-type.					endoplasmic reticulum|integral to plasma membrane	protein binding				0						TTTACCTCCACAGTGGAGATC	0.587000													22	40					0	0	0.018920	0	0
NAB2	4665	broad.mit.edu	37	12	57485018	57485018	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:57485018G>A	uc001smz.2	+	2	572	c.194G>A	c.(193-195)GGA>GAA	p.G65E		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	65	NCD1.				cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						ATCCAGCAGGGAGGGGACGAC	0.642000													53	86					0	0	0.014410	0	0
TRHDE	29953	broad.mit.edu	37	12	72893278	72893278	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:72893278G>A	uc001sxa.2	+	6	1480	c.1450G>A	c.(1450-1452)GAA>AAA	p.E484K		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	484	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TGTATTGCAGGAAAAGCAGAG	0.443000													5	48					0	0	0.001168	0	0
MYF6	4618	broad.mit.edu	37	12	81102648	81102648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:81102648C>T	uc001szf.1	+	3	691	c.638C>T	c.(637-639)TCG>TTG	p.S213L		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	213					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						TCGTCAGCCTCGAGTAGCCTT	0.542000													40	77					0	0	0.009718	0	0
RASSF9	9182	broad.mit.edu	37	12	86199525	86199525	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:86199525C>T	uc001taf.1	-	2	602	c.263G>A	c.(262-264)AGG>AAG	p.R88K		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	88	Ras-associating.				endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						AGGAAGAACCCTTTCGGAGCC	0.458000													34	58					0	0	0.017118	0	0
C12orf63	374467	broad.mit.edu	37	12	97133780	97133780	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:97133780C>T	uc001tet.1	+	18	2365	c.2287C>T	c.(2287-2289)CTT>TTT	p.L763F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	763										skin(6)|ovary(1)	7						GGATTCAAAACTTTTTGAAAA	0.313000													4	51					0	0	0.014758	0	0
ANO4	121601	broad.mit.edu	37	12	101333113	101333113	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:101333113C>T	uc010svm.1	+	4	753	c.181C>T	c.(181-183)CTT>TTT	p.L61F	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.L26F|ANO4_uc001thx.2_Missense_Mutation_p.L61F	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	61	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTCAATATTCTTTTTGATGA	0.393000										HNSCC(74;0.22)			41	55					0	0	0.013114	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105440679	105440679	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:105440679G>A	uc001tlc.2	-	14	1882	c.1755C>T	c.(1753-1755)CTC>CTT	p.L585L	ALDH1L2_uc009zuo.2_Silent_p.L40L|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	585	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						TATCTTACCCGAGTGGCTCTT	0.413000													37	225					0	0	0.013114	0	0
POLR3B	55703	broad.mit.edu	37	12	106824069	106824069	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:106824069A>G	uc001tlp.2	+	14	1504	c.1282A>G	c.(1282-1284)AGA>GGA	p.R428G	POLR3B_uc001tlq.2_Missense_Mutation_p.R370G	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	428					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						GTCTTTAAAGAGATTTAAAAT	0.433000													30	149					0	0	0.013726	0	0
BTBD11	121551	broad.mit.edu	37	12	108011178	108011178	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:108011178G>A	uc001tmk.1	+	9	2717	c.2196G>A	c.(2194-2196)ATG>ATA	p.M732I	BTBD11_uc009zut.1_Intron|BTBD11_uc001tmj.2_Missense_Mutation_p.M732I|BTBD11_uc001tml.1_Missense_Mutation_p.M269I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	732	ANK 4.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						AGGGTGATATGAACTCTTTCA	0.458000													9	68					0	0	0.006214	0	0
TBX3	6926	broad.mit.edu	37	12	115120881	115120881	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:115120881G>T	uc001tvt.1	-	1	1089	c.125C>A	c.(124-126)CCC>CAC	p.P42H	TBX3_uc001tvu.1_Missense_Mutation_p.P42H|TBX3_uc010syw.1_Missense_Mutation_p.P42H	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	42					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CGTCAGCGCGGGGAAGAACGG	0.701000													6	28					9.70103e-10	1.01256e-09	0.008291	1	0
KSR2	283455	broad.mit.edu	37	12	117996320	117996320	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:117996320G>A	uc001two.2	-	8	1352	c.1297C>T	c.(1297-1299)CAC>TAC	p.H433Y		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	462					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTCCTCGGTGGATGATCAGA	0.463000													23	41					0	0	0.008361	0	0
SIRT4	23409	broad.mit.edu	37	12	120741433	120741433	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:120741433G>A	uc001tyc.2	+	2	89	c.69G>A	c.(67-69)CCG>CCA	p.P23P		NM_012240	NP_036372	Q9Y6E7	SIRT4_HUMAN	sirtuin 4	23					chromatin silencing|negative regulation of insulin secretion|protein ADP-ribosylation|protein deacetylation	mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|protein binding|zinc ion binding				0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCAGCCAGCCGTGCTCGAAAG	0.498000													34	223					0	0	0.009718	0	0
TMEM132D	121256	broad.mit.edu	37	12	129558864	129558864	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:129558864G>A	uc009zyl.1	-	9	3184	c.2856C>T	c.(2854-2856)TTC>TTT	p.F952F	TMEM132D_uc001uia.2_Silent_p.F490F	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	952	Cytoplasmic (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CCTGCTCCTCGAAGGGAACCT	0.463000													34	105					0	0	0.009718	0	0
RIMBP2	23504	broad.mit.edu	37	12	130919399	130919399	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr12:130919399C>G	uc001uil.2	-	11	2246	c.2082G>C	c.(2080-2082)GAG>GAC	p.E694D	RIMBP2_uc001uim.2_Missense_Mutation_p.E602D|RIMBP2_uc001uin.1_Missense_Mutation_p.E353D	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	694						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CGCTGCTTCTCTCTAGGAAGA	0.592000													13	72					0	0	0.020292	0	0
IFT88	8100	broad.mit.edu	37	13	21172798	21172798	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:21172798C>T	uc001unh.2	+	12	1026	c.630C>T	c.(628-630)TTC>TTT	p.F210F	IFT88_uc001uni.2_Silent_p.F201F|IFT88_uc001unj.2_Silent_p.F200F|IFT88_uc010tcq.1_Silent_p.F181F|IFT88_uc001unk.2_5'UTR	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	210	TPR 1.			F -> S (in Ref. 1; AAA86720).	cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		AGGTTCTTTTCAATTTGGCCA	0.318000													9	63					0	0	0.006214	0	0
SACS	26278	broad.mit.edu	37	13	23908710	23908710	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:23908710A>T	uc001uon.2	-	10	9894	c.9305T>A	c.(9304-9306)TTA>TAA	p.L3102*	SACS_uc001uoo.2_Nonsense_Mutation_p.L2955*|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3102					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AAATGTCATTAAAAAAGATCT	0.353000													7	38					0	0	0.008291	0	0
MTUS2	23281	broad.mit.edu	37	13	29599548	29599548	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:29599548G>A	uc001usl.3	+	1	801	c.743G>A	c.(742-744)GGA>GAA	p.G248E		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	238						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						ACCTCAGAGGGAAAGAGTGTG	0.577000													5	20					0	0	0.001168	0	0
KIAA0564	23078	broad.mit.edu	37	13	42393431	42393431	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:42393431C>T	uc001uyj.2	-	15	1862	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	KIAA0564_uc001uyk.2_Missense_Mutation_p.E598K	NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	598						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GTTAAGAATTCTGGTCCCAGC	0.403000													7	29					0	0	0.001984	0	0
HNRNPA1L2	144983	broad.mit.edu	37	13	53216987	53216987	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:53216987C>T	uc001vgx.1	+	7	1433	c.360C>T	c.(358-360)CAC>CAT	p.H120H	HNRNPA1L2_uc001vgy.1_Silent_p.H120H|HNRNPA1L2_uc001vgz.1_Silent_p.H120H	NM_001011724	NP_001011724	Q32P51	RA1L2_HUMAN	heterogeneous nuclear ribonucleoprotein A1-like	120	Globular B domain.|RRM 2.				mRNA processing|mRNA transport|RNA splicing	cytoplasm|spliceosomal complex	nucleotide binding|RNA binding				0						AAGAACATCACCTAAGAGATT	0.398000													8	36					0	0	0.008291	0	0
MYO16	23026	broad.mit.edu	37	13	109704766	109704766	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr13:109704766G>A	uc001vqt.1	+	25	3051	c.2925G>A	c.(2923-2925)AAG>AAA	p.K975K	MYO16_uc010agk.1_Silent_p.K997K|MYO16_uc001vqu.1_Silent_p.K775K|MYO16_uc010tjh.1_Silent_p.K487K	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	975	Myosin head-like 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TGCTCAGTAAGAAAATGACAG	0.343000													10	55					0	0	0.013537	0	0
MYH7	4625	broad.mit.edu	37	14	23883309	23883309	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:23883309C>T	uc001wjx.2	-	38	5668	c.5562G>A	c.(5560-5562)ACG>ACA	p.T1854T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1854	Potential.		T -> M (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGTCCTCCTCCGTCTGGGGGC	0.602000													26	22					0	0	0.004656	0	0
TGM1	7051	broad.mit.edu	37	14	24731050	24731050	+	Missense_Mutation	SNP	G	A	A	rs138885883		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:24731050G>A	uc001wod.2	-	3	483	c.359C>T	c.(358-360)TCG>TTG	p.S120L	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	120				Missing (in Ref. 5; M86360).	cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	GTCCGAGCGCGAGCTCAGCAA	0.592000													32	30					0	0	0.005524	0	0
FNTB	2342	broad.mit.edu	37	14	65499385	65499385	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:65499385C>T	uc001xia.2	+	7	828	c.663C>T	c.(661-663)CTC>CTT	p.L221L	FNTB_uc010tsl.1_Silent_p.L255L|FNTB_uc010tsm.1_Silent_p.L175L|MAX_uc001xic.1_Intron|FNTB_uc001xid.2_5'UTR|FNTB_uc010tso.1_Silent_p.L136L	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	221					protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CTCCAGACCTCTTTGAGGGCA	0.507000													14	23					0	0	0.016723	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72128159	72128159	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:72128159C>T	uc001xms.2	+	7	2578	c.2230C>T	c.(2230-2232)CCG>TCG	p.P744S	SIPA1L1_uc001xmt.2_Missense_Mutation_p.P744S|SIPA1L1_uc001xmu.2_Missense_Mutation_p.P744S|SIPA1L1_uc001xmv.2_Missense_Mutation_p.P744S|SIPA1L1_uc010ttm.1_Missense_Mutation_p.P219S	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	744	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GGTGCACAATCCGTGCTCTGA	0.517000													28	27					0	0	0.015359	0	0
RBM25	58517	broad.mit.edu	37	14	73538452	73538452	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:73538452C>T	uc001xno.2	+	2	311	c.103C>T	c.(103-105)CCA>TCA	p.P35S	RBM25_uc001xnn.3_Missense_Mutation_p.P35S|RBM25_uc010ttu.1_Missense_Mutation_p.P35S|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	35					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		ACCTGTACCTCCAGGTAAGTT	0.448000													19	22					0	0	0.010504	0	0
TSHR	7253	broad.mit.edu	37	14	81610646	81610646	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:81610646C>T	uc001xvd.1	+	10	2400	c.2244C>T	c.(2242-2244)ACC>ACT	p.T748T		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	748	Cytoplasmic (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CCCATCTAACCCCAAAGAAGC	0.408000			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						12	52					0	0	0.004007	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418987	105418987	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:105418987G>A	uc010axc.1	-	7	2921	c.2801C>T	c.(2800-2802)CCC>CTC	p.P934L	AHNAK2_uc001ypx.2_Missense_Mutation_p.P834L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	934						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			ATCTATCTGGGGGCCCTTGAG	0.627000													138	114					0	0	0.014410	0	0
LOC646214	646214	broad.mit.edu	37	15	21937189	21937189	+	RNA	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:21937189C>T	uc010tzj.1	-	1		c.3551G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AATTCATCTCCTACCAGGTAA	0.408000													9	335					0	0	0.008291	0	0
SNRPN	6638	broad.mit.edu	37	15	25223563	25223563	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:25223563C>T	uc001ywp.1	+	13	1585	c.695C>T	c.(694-696)CCC>CTC	p.P232L	SNRPN_uc001ywq.1_Missense_Mutation_p.P232L|SNRPN_uc001ywr.1_Missense_Mutation_p.P232L|SNRPN_uc001yws.1_Missense_Mutation_p.P232L|SNRPN_uc001ywt.1_Missense_Mutation_p.P232L|SNRPN_uc001ywv.1_Missense_Mutation_p.P235L|SNRPN_uc001yww.1_Missense_Mutation_p.P232L|SNRPN_uc001ywx.1_Missense_Mutation_p.P232L|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	232	Repeat-rich region.|				RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		GGTCCACCTCCCCCAGGAATG	0.473000									Prader-Willi_syndrome				53	196					0	0	0.014410	0	0
ATP8B4	79895	broad.mit.edu	37	15	50223484	50223484	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:50223484G>A	uc001zxu.2	-	16	1616	c.1474C>T	c.(1474-1476)CAG>TAG	p.Q492*	ATP8B4_uc010ber.2_Nonsense_Mutation_p.Q365*|ATP8B4_uc010ufd.1_Intron|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	492	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TCAGGTGACTGAACTTGGTAA	0.368000													9	23					0	0	0.006214	0	0
TRPM7	54822	broad.mit.edu	37	15	50884667	50884667	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:50884667C>T	uc001zyt.3	-	26	4029	c.3765G>A	c.(3763-3765)TCG>TCA	p.S1255S	TRPM7_uc010bew.1_Silent_p.S1255S	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	1255	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TGCTAGCTTCCGACGCTTTCT	0.393000													19	133					0	0	0.016522	0	0
UNC13C	440279	broad.mit.edu	37	15	54307555	54307555	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:54307555C>T	uc002ack.2	+	1	2455	c.2455C>T	c.(2455-2457)CTG>TTG	p.L819L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	819					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CACACAGAGTCTGAGTGGGTA	0.428000													27	26					0	0	0.012213	0	0
UNC13C	440279	broad.mit.edu	37	15	54307936	54307936	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:54307936G>A	uc002ack.2	+	1	2836	c.2836G>A	c.(2836-2838)GAA>AAA	p.E946K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	946					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGCTGAGATGGAAATAAGAGA	0.418000													6	10					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	15	73192509	73192509	+	RNA	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:73192509C>T	uc002avl.1	-	1		c.183G>A								full-length cDNA clone CS0DI007YP06 of Placenta Cot 25-normalized of Homo sapiens (human).																		CATTATCCACCTTAAAGTGAT	0.433000													11	10					0	0	0.010729	0	0
STRA6	64220	broad.mit.edu	37	15	74474769	74474769	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:74474769C>T	uc002axk.2	-	15	1515	c.1333G>A	c.(1333-1335)GGA>AGA	p.G445R	STRA6_uc002axi.2_Missense_Mutation_p.G254R|STRA6_uc010ulh.1_Missense_Mutation_p.G483R|STRA6_uc002axj.2_Missense_Mutation_p.G484R|STRA6_uc010bji.2_Missense_Mutation_p.G445R|STRA6_uc002axl.2_Missense_Mutation_p.G377R|STRA6_uc002axm.2_Missense_Mutation_p.G445R|STRA6_uc002axn.2_Missense_Mutation_p.G436R|STRA6_uc010uli.1_Missense_Mutation_p.G482R|STRA6_uc010bjj.1_RNA	NM_022369	NP_071764	Q9BX79	STRA6_HUMAN	stimulated by retinoic acid gene 6 homolog	445	Helical; (Potential).				adrenal gland development|alveolar primary septum development|developmental growth|diaphragm development|digestive tract morphogenesis|ear development|embryonic camera-type eye formation|embryonic digestive tract development|eyelid development in camera-type eye|face morphogenesis|feeding behavior|female genitalia development|kidney development|lung vasculature development|neuromuscular process|nose morphogenesis|paramesonephric duct development|positive regulation of behavior|pulmonary artery morphogenesis|pulmonary valve morphogenesis|smooth muscle tissue development|transport|uterus morphogenesis|ventricular septum development|vocal learning	integral to membrane|plasma membrane|protein complex	receptor activity			central_nervous_system(1)	1						GCCGTGGTTCCCAGGAAGAAG	0.612000													3	14					0	0	0.004672	0	0
CYP11A1	1583	broad.mit.edu	37	15	74636322	74636322	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:74636322C>T	uc002axt.2	-	4	792	c.637G>A	c.(637-639)GTC>ATC	p.V213I	CYP11A1_uc002axs.2_Missense_Mutation_p.V55I|CYP11A1_uc010bjm.1_Missense_Mutation_p.V55I|CYP11A1_uc010bjn.1_Intron|CYP11A1_uc010bjo.1_Missense_Mutation_p.V213I|CYP11A1_uc010bjp.1_RNA|CYP11A1_uc010ulj.1_5'UTR	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	213					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CCAAAAATGACGTTAGTGATG	0.592000													8	39					0	0	0.008291	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053142	85053142	+	RNA	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:85053142C>T	uc002bkm.2	-	9		c.1905G>A			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						TTTTTCAATTCCTTGACCCGC	0.393000													3	8					0	0	0.014758	0	0
PLIN1	5346	broad.mit.edu	37	15	90213233	90213233	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:90213233G>A	uc010upx.1	-	5	686	c.576C>T	c.(574-576)CTC>CTT	p.L192L	PLIN1_uc002boh.2_Silent_p.L192L	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	192					triglyceride catabolic process	lipid particle	lipid binding			central_nervous_system(1)|skin(1)	2						TGTCTGGAGGGAGGAGGTACT	0.597000													16	21					0	0	0.012319	0	0
CHD2	1106	broad.mit.edu	37	15	93492257	93492257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr15:93492257C>T	uc002bsp.2	+	13	2028	c.1453C>T	c.(1453-1455)CGA>TGA	p.R485*	CHD2_uc002bsn.2_Nonsense_Mutation_p.R485*|CHD2_uc002bso.1_Nonsense_Mutation_p.R485*|CHD2_uc010urb.1_Nonsense_Mutation_p.R498*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	485					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TCTGGAACTTCGAGATTATCA	0.413000													9	90					0	0	0.004482	0	0
ZNF434	54925	broad.mit.edu	37	16	3433301	3433301	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:3433301G>A	uc002cuz.2	-	6	1811	c.1009C>T	c.(1009-1011)CAC>TAC	p.H337Y	ZNF434_uc002cux.3_Missense_Mutation_p.H548Y|ZNF434_uc010uwx.1_Missense_Mutation_p.H260Y|ZNF434_uc002cuy.3_Missense_Mutation_p.H260Y	NM_017810	NP_060280	Q9NX65	ZN434_HUMAN	zinc finger protein 434	337	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CTGCACTTGTGAGGCTTCTCG	0.507000													6	32					0	0	0.001168	0	0
ADCY9	115	broad.mit.edu	37	16	4016009	4016009	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:4016009C>T	uc002cvx.2	-	11	4368	c.3829G>A	c.(3829-3831)GAG>AAG	p.E1277K		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1277	Cytoplasmic (Potential).			QHQLSISPDIRVQVDGSIGRSPTDEIANLVPSVQYVDKTSL GSDSSTQAKDAHLSPKRPWKEPVKAEERGRFGKAIEKDDCD ETGIEEANELTKLNVSKSV -> APAVHLPRHPRPGGWQHR TVSHRRDCQPGAFCPVCGQDISGF (in Ref. 1; AAC24201).	activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TTGGCAATCTCGTCTGTGGGA	0.592000													18	32					0	0	0.006122	0	0
MYH11	4629	broad.mit.edu	37	16	15818207	15818207	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:15818207C>T	uc002ddy.2	-	31	4283	c.4176G>A	c.(4174-4176)GAG>GAA	p.E1392E	MYH11_uc002ddv.2_Silent_p.E1399E|MYH11_uc002ddw.2_Silent_p.E1392E|MYH11_uc002ddx.2_Silent_p.E1399E|MYH11_uc010bvg.2_Silent_p.E1224E|NDE1_uc010uzy.1_3'UTR|NDE1_uc002dds.2_3'UTR|MYH11_uc010bvh.2_Silent_p.E98E|NDE1_uc002ddz.1_RNA	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	1392	Potential.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						TCTTCTTCCCCTCTTCCAGAG	0.552000			T	CBFB	AML								16	37					0	0	0.004990	0	0
IQCK	124152	broad.mit.edu	37	16	19838399	19838399	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:19838399C>T	uc002dgr.2	+	9	1441	c.742C>T	c.(742-744)CGC>TGC	p.R248C	IQCK_uc002dgs.2_RNA|IQCK_uc010vat.1_Silent_p.F219F|IQCK_uc010bwc.2_RNA|IQCK_uc010vau.1_Missense_Mutation_p.R160C	NM_153208	NP_694940	Q8N0W5	IQCK_HUMAN	IQ motif containing K	248										skin(1)	1						GAAGAAACTTCGCGAGGCCAA	0.438000													33	69					0	0	0.007835	0	0
ACSM1	116285	broad.mit.edu	37	16	20681297	20681297	+	Missense_Mutation	SNP	C	T	T	rs138822345		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:20681297C>T	uc002dhm.1	-	5	832	c.764G>A	c.(763-765)CGG>CAG	p.R255Q	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.R255Q	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	255					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CTTCAGGCTCCGTAATTTCCT	0.438000													10	23					0	0	0.010729	0	0
VWA3A	146177	broad.mit.edu	37	16	22135021	22135021	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:22135021G>A	uc010vbq.1	+	16	1621	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Missense_Mutation_p.E517K	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	509						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CACAGTCTGTGAAAAAAGGTA	0.502000													21	96					0	0	0.010504	0	0
EEF2K	29904	broad.mit.edu	37	16	22268095	22268095	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:22268095C>T	uc002dki.2	+	7	1130	c.645C>T	c.(643-645)ATC>ATT	p.I215I	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	215	Alpha-type protein kinase.				insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		TGTGCATCATCGAGCTGAAGG	0.607000													15	27					0	0	0.004007	0	0
CDR2	1039	broad.mit.edu	37	16	22358900	22358900	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:22358900C>T	uc002dkn.2	-	5	1059	c.751G>A	c.(751-753)GAG>AAG	p.E251K		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	251	Potential.					nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		ACCTCGGCCTCTAGTTCCAGC	0.542000													16	97					0	0	0.006122	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251875	25251875	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:25251875C>T	uc002dod.3	-	7	2573	c.2166G>A	c.(2164-2166)CAG>CAA	p.Q722Q	ZKSCAN2_uc010vcl.1_Silent_p.Q518Q	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	722					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		TCGGCTTTCCCTGTCTAATTC	0.453000													17	40					0	0	0.007413	0	0
TAOK2	9344	broad.mit.edu	37	16	29998700	29998700	+	Missense_Mutation	SNP	G	A	A	rs146662869		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:29998700G>A	uc002dva.1	+	16	3890	c.3107G>A	c.(3106-3108)CGA>CAA	p.R1036Q	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.R1043Q|TAOK2_uc002dvd.1_Missense_Mutation_p.R863Q	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1036	Leu-rich.				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						AGCTGGCGCCGAGGCCTCATG	0.657000													10	16					0	0	0.013537	0	0
ZNF689	115509	broad.mit.edu	37	16	30616403	30616403	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:30616403C>T	uc002dyx.2	-	3	1005	c.685G>A	c.(685-687)GGG>AGG	p.G229R	ZNF689_uc010bzy.2_5'UTR	NM_138447	NP_612456	Q96CS4	ZN689_HUMAN	zinc finger protein HIT-39	229					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			GGCTTCTCCCCTGTATGGATG	0.607000													28	60					0	0	0.007291	0	0
AHSP	51327	broad.mit.edu	37	16	31539884	31539884	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:31539884C>T	uc002ecj.2	+	3	266	c.181C>T	c.(181-183)CAA>TAA	p.Q61*		NM_016633	NP_057717	Q9NZD4	AHSP_HUMAN	erythroid associated factor	61					hemoglobin metabolic process|hemopoiesis|protein folding|protein stabilization	hemoglobin complex	hemoglobin binding|unfolded protein binding				0						AGGGGAGCCCCAAGAGCGAGA	0.532000													14	60					0	0	0.020292	0	0
DNAJA2	10294	broad.mit.edu	37	16	46993207	46993207	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:46993207G>A	uc002eeo.2	-	7	1041	c.899C>T	c.(898-900)CCT>CTT	p.P300L	DNAJA2_uc002eep.2_Missense_Mutation_p.P217L	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	300					positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				TACTTTGCCAGGGGGGTATTT	0.333000													30	32					0	0	0.015359	0	0
GOT2	2806	broad.mit.edu	37	16	58749996	58749996	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:58749996G>A	uc002eof.1	-	8	1055	c.941C>T	c.(940-942)CCC>CTC	p.P314L	GOT2_uc010vim.1_Missense_Mutation_p.P271L	NM_002080	NP_002071	P00505	AATM_HUMAN	aspartate aminotransferase 2 precursor	314					aspartate catabolic process|fatty acid transport|gluconeogenesis|response to ethanol	mitochondrial matrix|plasma membrane	L-aspartate:2-oxoglutarate aminotransferase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GGAATACATGGGACGGATCAA	0.498000													20	18					0	0	0.014323	0	0
HYDIN	54768	broad.mit.edu	37	16	71209557	71209557	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:71209557C>T	uc002ezr.2	-	5	597	c.469G>A	c.(469-471)GGA>AGA	p.G157R	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.G157R|HYDIN_uc010vmc.1_Missense_Mutation_p.G174R|HYDIN_uc010vmd.1_Missense_Mutation_p.G184R|HYDIN_uc002ezw.3_Missense_Mutation_p.G174R	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	157										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GAAGGCACTCCAGGAGCCACT	0.448000													21	60					0	0	0.018920	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033623	82033623	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:82033623C>T	uc002fgu.2	-	3	403	c.275G>A	c.(274-276)CGA>CAA	p.R92Q		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	92					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GATCAGGTTTCGATTGAGTTG	0.502000													22	44					0	0	0.021523	0	0
FOXC2	2303	broad.mit.edu	37	16	86601503	86601503	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:86601503C>T	uc002fjq.2	+	1	647	c.562C>T	c.(562-564)CCG>TCG	p.P188S		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	188					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						GGAGCCGCCCCCGGCGGCGTC	0.701000									Late-onset_Hereditary_Lymphedema				7	19					0	0	0.003080	0	0
SHPK	23729	broad.mit.edu	37	17	3518752	3518752	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:3518752C>T	uc002fvz.1	-	6	1006	c.903G>A	c.(901-903)ACG>ACA	p.T301T		NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	301					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		CGACTGGGGCCGTAGGGTCTG	0.607000													24	20					0	0	0.004656	0	0
PLD2	5338	broad.mit.edu	37	17	4720460	4720460	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:4720460A>T	uc002fzc.2	+	17	1822	c.1721A>T	c.(1720-1722)AAG>ATG	p.K574M	PLD2_uc010vsj.1_Missense_Mutation_p.K431M|PLD2_uc002fzd.2_Missense_Mutation_p.K574M	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	574	Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	GCCAAGTACAAGACTCCCACA	0.612000													17	247					0	0	0.010504	0	0
PITPNM3	83394	broad.mit.edu	37	17	6364707	6364707	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:6364707T>G	uc002gdd.3	-	18	2627	c.2476A>C	c.(2476-2478)AAC>CAC	p.N826H	PITPNM3_uc010cln.2_Missense_Mutation_p.N790H|PITPNM3_uc010clm.2_Missense_Mutation_p.N309H|PITPNM3_uc002gdc.3_Missense_Mutation_p.N417H	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	826					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		TGCATGAGGTTGCGCAGGAAG	0.642000													37	46					0	0	0.017118	0	0
TEKT3	64518	broad.mit.edu	37	17	15234658	15234658	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:15234658G>A	uc002gon.2	-	3	432	c.245C>T	c.(244-246)CCC>CTC	p.P82L		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	82					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		GGAAACAAAGGGAAGCATGGT	0.498000													78	56					0	0	0.014410	0	0
NCOR1	9611	broad.mit.edu	37	17	16068444	16068444	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:16068444G>A	uc002gpo.2	-	5	707	c.467C>T	c.(466-468)CCA>CTA	p.P156L	NCOR1_uc002gpn.2_Missense_Mutation_p.P156L|NCOR1_uc002gpp.1_Missense_Mutation_p.P47L|NCOR1_uc002gpr.2_Missense_Mutation_p.P47L|NCOR1_uc002gps.1_Missense_Mutation_p.P156L|NCOR1_uc010coz.1_5'UTR|NCOR1_uc010cpb.1_Missense_Mutation_p.P156L|NCOR1_uc010cpa.1_Missense_Mutation_p.P156L|NCOR1_uc002gpu.2_Missense_Mutation_p.P156L	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	156	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGGAGAGGATGGAGCTTCATG	0.383000													33	113					0	0	0.007835	0	0
EFCAB5	374786	broad.mit.edu	37	17	28408001	28408001	+	Splice_Site	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:28408001T>C	uc002het.2	+	17	3618	c.3426_splice	c.e17+2	p.Q1142_splice	EFCAB5_uc010cse.2_Splice_Site_p.Q897_splice|EFCAB5_uc010csf.2_Intron	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a								calcium ion binding			ovary(1)|skin(1)	2						TTCTATCAGGTAAGTCATAGA	0.398000													11	15					0	0	0.020292	0	0
TAF15	8148	broad.mit.edu	37	17	34171094	34171094	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:34171094T>C	uc002hkd.2	+	13	1106	c.1020T>C	c.(1018-1020)TAT>TAC	p.Y340Y	TAF15_uc010ctw.1_RNA|TAF15_uc002hkc.2_Silent_p.Y337Y	NM_139215	NP_631961	Q92804	RBP56_HUMAN	TBP-associated factor 15 isoform 1	340	Arg/Gly-rich.				positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding|zinc ion binding		TAF15/NR4A3(33)	bone(33)|lung(1)|skin(1)	35		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		GTGGAGGATATAGAGGTCGTG	0.478000			T	TEC|CHN1|ZNF384	extraskeletal myxoid chondrosarcomas|ALL								83	56					0	0	0.014410	0	0
PCGF2	7703	broad.mit.edu	37	17	36895320	36895320	+	Splice_Site	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:36895320C>T	uc002hqp.1	-	6	559	c.316_splice	c.e6+1	p.V106_splice	PCGF2_uc002hqn.1_Splice_Site_p.V106_splice|PCGF2_uc002hqo.1_Splice_Site_p.V106_splice|PCGF2_uc010cvo.1_Splice_Site|PCGF2_uc002hqq.1_Splice_Site_p.V106_splice	NM_007144	NP_009075	P35227	PCGF2_HUMAN	ring finger protein 110						negative regulation of transcription from RNA polymerase II promoter	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2	Breast(7;9.07e-22)					AGCACACTCACCCTCCGTCAG	0.597000													12	85					0	0	0.020292	0	0
KRT34	3885	broad.mit.edu	37	17	39535262	39535262	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:39535262C>T	uc002hwm.2	-	6	1181	c.1169G>A	c.(1168-1170)CGG>CAG	p.R390Q		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	390	Rod.|Coil 2.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				ACACTCCAGCCGGGCACGCAC	0.577000													23	172					0	0	0.012213	0	0
KRT9	3857	broad.mit.edu	37	17	39725840	39725840	+	Splice_Site	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:39725840C>T	uc002hxe.3	-	4	949	c.883_splice	c.e4-1	p.E295_splice	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9						intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				GACTCATCTCCTGCCAGGGAA	0.527000													51	32					0	0	0.014410	0	0
KRT17	3872	broad.mit.edu	37	17	39780634	39780634	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:39780634C>T	uc002hxh.2	-	1	249	c.128G>A	c.(127-129)GGA>GAA	p.G43E	JUP_uc010wfs.1_Intron|KRT17_uc010wft.1_Missense_Mutation_p.G43E	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	43	Head.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				GCCAGCAGATCCCAGCCTGCA	0.692000									Steatocystoma_Multiplex				8	12					0	0	0.004482	0	0
STAT5A	6776	broad.mit.edu	37	17	40453367	40453367	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:40453367T>C	uc002hzj.1	+	10	1706	c.1064T>C	c.(1063-1065)CTG>CCG	p.L355P	STAT5A_uc010cya.1_Missense_Mutation_p.L355P|STAT5A_uc010cyb.1_Missense_Mutation_p.L355P|STAT5A_uc010cyc.1_Missense_Mutation_p.L325P	NM_003152	NP_003143	P42229	STA5A_HUMAN	signal transducer and activator of transcription	355					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|oxaloacetate metabolic process|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_cancers(22;1.56e-06)|all_epithelial(22;3.17e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		GTACGCCTGCTGGTGGGCGGG	0.557000													63	62					0	0	0.014410	0	0
KIF18B	146909	broad.mit.edu	37	17	43005640	43005640	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:43005640C>G	uc010wji.1	-	13	2140	c.2039G>C	c.(2038-2040)GGA>GCA	p.G680A	KIF18B_uc002iht.2_Missense_Mutation_p.G689A|KIF18B_uc010wjh.1_Missense_Mutation_p.G677A	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GGCCCTTTCTCCTTTGGGGGT	0.657000													11	8					0	0	0.020292	0	0
ANKFN1	162282	broad.mit.edu	37	17	54559724	54559724	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:54559724A>G	uc002iun.1	+	17	2143	c.2108A>G	c.(2107-2109)AAC>AGC	p.N703S		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	703										large_intestine(1)|ovary(1)	2						CAGGCAAGGAACTTCCGCCTC	0.498000													73	79					0	0	0.014410	0	0
CLTC	1213	broad.mit.edu	37	17	57756867	57756867	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:57756867C>T	uc002ixq.1	+	18	3349	c.2906C>T	c.(2905-2907)CCC>CTC	p.P969L	CLTC_uc002ixp.2_Missense_Mutation_p.P969L|CLTC_uc002ixr.1_Missense_Mutation_p.P973L	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	969	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					TACAGGAGACCCCTAATTGAC	0.418000			T	ALK|TFE3	ALCL|renal 								16	56					0	0	0.012319	0	0
MED13	9969	broad.mit.edu	37	17	60088523	60088523	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:60088523A>G	uc002izo.2	-	9	1432	c.1355T>C	c.(1354-1356)ATA>ACA	p.I452T	MED13_uc002izp.2_Missense_Mutation_p.I68T	NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	452					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						CTTAGGAAGTATTTGTTGTTG	0.403000													9	53					0	0	0.013537	0	0
KCNH6	81033	broad.mit.edu	37	17	61601559	61601559	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:61601559G>A	uc002jay.2	+	2	216	c.136G>A	c.(136-138)GAC>AAC	p.D46N	KCNH6_uc002jax.1_Missense_Mutation_p.D46N|KCNH6_uc010wpl.1_5'UTR|KCNH6_uc010wpm.1_Missense_Mutation_p.D46N|KCNH6_uc002jaz.1_Missense_Mutation_p.D46N	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	46	PAS.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TTACTGCAACGACGGCTTCTG	0.587000													39	246					0	0	0.009718	0	0
BPTF	2186	broad.mit.edu	37	17	65850419	65850419	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:65850419G>A	uc002jgf.2	+	2	1038	c.977G>A	c.(976-978)TGG>TAG	p.W326*	BPTF_uc002jge.2_Nonsense_Mutation_p.W326*|BPTF_uc010wqm.1_Nonsense_Mutation_p.W326*	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	326					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GGGATGACGTGGCCAGAGGTG	0.478000													14	89					0	0	0.020292	0	0
SLC16A6	9120	broad.mit.edu	37	17	66268882	66268882	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:66268882G>A	uc002jgz.1	-	4	591	c.403C>T	c.(403-405)CCA>TCA	p.P135S	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Missense_Mutation_p.P135S	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	135	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	GTTACAGTTGGGAGAAAACTA	0.423000													28	53					0	0	0.007291	0	0
AFMID	125061	broad.mit.edu	37	17	76201792	76201792	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:76201792C>T	uc002jva.3	+	9	768	c.753C>T	c.(751-753)TTC>TTT	p.F251F	AFMID_uc002jvb.3_Intron|AFMID_uc002juz.3_Silent_p.F251F	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	251						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			CCCCCGAATTCCACCGACAGT	0.592000													6	58					0	0	0.003080	0	0
RPTOR	57521	broad.mit.edu	37	17	78796099	78796099	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:78796099G>A	uc002jyt.1	+	8	1794	c.989G>A	c.(988-990)CGG>CAG	p.R330Q	RPTOR_uc002jys.2_Missense_Mutation_p.R330Q|RPTOR_uc010wuf.1_Missense_Mutation_p.R145Q|RPTOR_uc010wug.1_Missense_Mutation_p.R330Q	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	330					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						GTGCTCCCCCGGGGTGAGGCG	0.647000													34	166					0	0	0.019004	0	0
CCDC137	339230	broad.mit.edu	37	17	79637484	79637484	+	Splice_Site	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr17:79637484G>A	uc002kbc.3	+	3	533	c.497_splice	c.e3+1	p.A166_splice	CCDC137_uc002kbd.2_Splice_Site	NM_199287	NP_954981	Q6PK04	CC137_HUMAN	coiled-coil domain containing 137											central_nervous_system(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			CAAAAAAAGCGTGAGTGGAGG	0.597000													16	8					0	0	0.004990	0	0
CEP192	55125	broad.mit.edu	37	18	13099491	13099491	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:13099491C>A	uc010xac.1	+	37	6654	c.6574C>A	c.(6574-6576)CTT>ATT	p.L2192I	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.L1717I|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.L614I|CEP192_uc002krw.2_Missense_Mutation_p.L341I|CEP192_uc002krx.2_Missense_Mutation_p.L196I|CEP192_uc002kry.2_RNA	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	2192										ovary(4)|pancreas(1)	5						ACTACAAATTCTTGTGAGTCC	0.333000													16	33					2.35188e-11	2.4656e-11	0.006122	1	0
SS18	6760	broad.mit.edu	37	18	23615044	23615044	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:23615044G>A	uc002kvm.2	-	9	1099	c.1021C>T	c.(1021-1023)CCA>TCA	p.P341S	SS18_uc002kvn.2_Missense_Mutation_p.P310S|SS18_uc010xbf.1_Missense_Mutation_p.P259S|SS18_uc010xbg.1_Missense_Mutation_p.P258S|SS18_uc010xbh.1_Missense_Mutation_p.P258S|SS18_uc010xbi.1_Missense_Mutation_p.P318S|SS18_uc010dlz.1_Missense_Mutation_p.P289S	NM_001007559	NP_001007560	Q15532	SSXT_HUMAN	synovial sarcoma translocation, chromosome 18	341	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	ligand-dependent nuclear receptor transcription coactivator activity|protein binding		SS18/SSX1(1169)|SS18/SSX2(702)|SS18/SSX4(12)	soft_tissue(1883)|ovary(1)	1884	all_cancers(21;0.000194)|Lung NSC(5;0.000413)|all_lung(6;0.00118)|Ovarian(20;0.124)					CCCTGTTGTGGAGGTGGTCCC	0.478000			T	SSX1| SSX2	synovial sarcoma								25	56					0	0	0.007291	0	0
DSC3	1825	broad.mit.edu	37	18	28584252	28584252	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:28584252C>T	uc002kwj.3	-	13	2124	c.1969G>A	c.(1969-1971)GGC>AGC	p.G657S	DSC3_uc002kwi.3_Missense_Mutation_p.G657S	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	657	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GCAGCTTGGCCGGCCCTGTCT	0.388000													8	57					0	0	0.006214	0	0
DSG4	147409	broad.mit.edu	37	18	28968393	28968393	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:28968393C>T	uc002kwq.2	+	4	415	c.280C>T	c.(280-282)CGA>TGA	p.R94*	DSG4_uc002kwr.2_Nonsense_Mutation_p.R94*	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	94	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGGATTGATCGACCACCATA	0.408000													8	29					0	0	0.004482	0	0
ASXL3	80816	broad.mit.edu	37	18	31326113	31326113	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:31326113G>T	uc010dmg.1	+	12	6356	c.6301G>T	c.(6301-6303)GTT>TTT	p.V2101F	ASXL3_uc002kxq.2_Missense_Mutation_p.V1808F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATGAAACAAGTTTCCTATGA	0.408000													19	39					2.89027e-11	3.02337e-11	0.014323	1	0
SYT4	6860	broad.mit.edu	37	18	40850435	40850435	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:40850435G>A	uc002law.2	-	4	1518	c.1149C>T	c.(1147-1149)TCC>TCT	p.S383S	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Silent_p.S365S|SYT4_uc010dnh.2_RNA	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	383	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						CCTCATTTCGGGACCCCCTTT	0.458000													19	45					0	0	0.008871	0	0
SLC14A1	6563	broad.mit.edu	37	18	43310388	43310388	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:43310388C>T	uc010xcn.1	+	4	422	c.103C>T	c.(103-105)CTT>TTT	p.L35F	SLC14A1_uc010dnk.2_Missense_Mutation_p.L91F|SLC14A1_uc002lbf.3_Missense_Mutation_p.L35F|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Intron|SLC14A1_uc002lbh.3_Intron|SLC14A1_uc002lbi.3_Intron|SLC14A1_uc002lbj.3_Missense_Mutation_p.L91F|SLC14A1_uc002lbk.3_Missense_Mutation_p.L35F	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	35						integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CCCCAAAGCTCTTGGCTATGT	0.493000													14	41					0	0	0.004007	0	0
CXXC1	30827	broad.mit.edu	37	18	47812290	47812290	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:47812290C>G	uc002leq.3	-	5	1201	c.468G>C	c.(466-468)CAG>CAC	p.Q156H	CXXC1_uc002lep.3_Missense_Mutation_p.Q13H|CXXC1_uc002ler.3_Missense_Mutation_p.Q156H|CXXC1_uc010doy.2_Missense_Mutation_p.Q156H|CXXC1_uc002les.2_Missense_Mutation_p.Q156H	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	156					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						gctgctgctgctggtgatgct	0.468000													3	18					0	0	0.004672	0	0
ALPK2	115701	broad.mit.edu	37	18	56171359	56171359	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:56171359G>A	uc002lhj.3	-	11	6265	c.6051C>T	c.(6049-6051)ATC>ATT	p.I2017I		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	2017	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CAGGCCGATGGATAAGAAAAA	0.473000													14	71					0	0	0.003163	0	0
HMSD	284293	broad.mit.edu	37	18	61621654	61621654	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:61621654A>C	uc010dqj.2	+	3	234	c.85A>C	c.(85-87)AGT>CGT	p.S29R		NM_001123366	NP_001116838	A8MTL9	HMSD_HUMAN	histocompatibility (minor) serpin domain	29						extracellular region	serine-type endopeptidase inhibitor activity				0						ACTTTGTTTTAGTAAAATCGG	0.338000													16	44					0	0	0.008871	0	0
TMX3	54495	broad.mit.edu	37	18	66346769	66346769	+	Splice_Site	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:66346769C>T	uc002lkf.2	-	15	1171	c.1036_splice	c.e15-1	p.A346_splice	TMX3_uc010xez.1_Splice_Site_p.A205_splice	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor						cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						CTCCTTGGGCCTTCAAAAAAG	0.328000													5	35					0	0	0.001984	0	0
SALL3	27164	broad.mit.edu	37	18	76755153	76755153	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr18:76755153C>T	uc002lmt.2	+	2	3162	c.3162C>T	c.(3160-3162)TCC>TCT	p.S1054S	SALL3_uc010dra.2_Silent_p.S589S	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	1054					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCCTGATCTCCAGCGCCGCAC	0.592000													13	60					0	0	0.003163	0	0
PALM	5064	broad.mit.edu	37	19	746736	746736	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:746736G>A	uc002lpm.1	+	9	1280	c.1086G>A	c.(1084-1086)GCG>GCA	p.A362A	PALM_uc002lpn.1_Silent_p.A318A|PALM_uc010xfu.1_Silent_p.A227A	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	362					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		AGAATCAGGCGGGGCCCGAGG	0.672000													4	5					0	0	0.001168	0	0
HNRNPM	4670	broad.mit.edu	37	19	8539077	8539077	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:8539077A>T	uc010dwe.2	+	12	1149	c.1069A>T	c.(1069-1071)ATG>TTG	p.M357L	HNRNPM_uc010dwc.1_Missense_Mutation_p.M342L|HNRNPM_uc010xke.1_Missense_Mutation_p.M303L|HNRNPM_uc010dwd.2_Missense_Mutation_p.M318L|HNRNPM_uc002mka.2_Missense_Mutation_p.M222L	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	357					alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						TGGTGGTGGTATGGAAAACAT	0.463000													47	159					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9072618	9072618	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:9072618G>A	uc002mkp.2	-	3	15032	c.14828C>T	c.(14827-14829)CCT>CTT	p.P4943L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4945	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGACTGATCAGGGCCAGGGAA	0.498000													40	66					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9082451	9082451	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:9082451T>C	uc002mkp.2	-	1	9568	c.9364A>G	c.(9364-9366)ACA>GCA	p.T3122A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3123	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACAAGGATGTTGGGGTCTCA	0.498000													51	123					0	0	0.014410	0	0
OR7E24	26648	broad.mit.edu	37	19	9361872	9361872	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:9361872C>T	uc002mlb.1	+	1	153	c.153C>T	c.(151-153)TCC>TCT	p.S51S		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	51	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGTTCCTGTCCATGTACCTGG	0.572000													47	79					0	0	0.014410	0	0
EPS15L1	58513	broad.mit.edu	37	19	16513163	16513163	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:16513163G>A	uc002ndz.1	-	16	1766	c.1760C>T	c.(1759-1761)TCC>TTC	p.S587F	EPS15L1_uc002ndx.2_Missense_Mutation_p.S587F|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpe.1_Missense_Mutation_p.S477F|EPS15L1_uc010xpf.1_Missense_Mutation_p.S490F|EPS15L1_uc002nea.1_Missense_Mutation_p.S587F|EPS15L1_uc010eah.1_Missense_Mutation_p.S587F|EPS15L1_uc002neb.1_Missense_Mutation_p.S433F|EPS15L1_uc002nec.1_Missense_Mutation_p.S587F	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	587					endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						CTCTGCCAGGGAGACGCCTTC	0.597000													19	104					0	0	0.018920	0	0
PRODH2	58510	broad.mit.edu	37	19	36303154	36303154	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:36303154T>C	uc002obx.1	-	4	638	c.620A>G	c.(619-621)AAC>AGC	p.N207S		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	207					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity	p.N207K(1)		ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCACCGAGGTTCCCCTCATA	0.687000													40	43					0	0	0.013114	0	0
DPF1	8193	broad.mit.edu	37	19	38706802	38706802	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:38706802G>A	uc002ohl.2	-	8	852	c.825C>T	c.(823-825)TCC>TCT	p.S275S	DPF1_uc002ohm.2_Silent_p.S319S|DPF1_uc002ohn.2_Silent_p.S237S|DPF1_uc010xtu.1_Silent_p.S293S|DPF1_uc010xtv.1_Silent_p.S293S	NM_004647	NP_004638	Q92782	DPF1_HUMAN	D4, zinc and double PHD fingers family 1 isoform	275	PHD-type 1.				induction of apoptosis|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nBAF complex	zinc ion binding				0	all_cancers(60;1.24e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AGTCCGCACAGGAGATGAGGT	0.642000													21	78					0	0	0.014323	0	0
RYR1	6261	broad.mit.edu	37	19	38980715	38980715	+	Splice_Site	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:38980715G>A	uc002oit.2	+	36	5945	c.5815_splice	c.e36-1	p.M1939_splice	RYR1_uc002oiu.2_Splice_Site_p.M1939_splice	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1						muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCCTTCCACAGATGTGCCACC	0.582000													11	73					0	0	0.003163	0	0
FBXO27	126433	broad.mit.edu	37	19	39516072	39516072	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:39516072G>A	uc002okh.2	-	6	913	c.831C>T	c.(829-831)ATC>ATT	p.I277I		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	277	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GGACTCGCACGATCACACTGG	0.587000													20	103					0	0	0.014323	0	0
AKT2	208	broad.mit.edu	37	19	40741909	40741909	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:40741909G>A	uc002onf.2	-	11	1325	c.1063C>T	c.(1063-1065)CAC>TAC	p.H355Y	AKT2_uc010egs.2_Missense_Mutation_p.H312Y|AKT2_uc010egt.2_Missense_Mutation_p.H293Y|AKT2_uc010xvj.1_Missense_Mutation_p.H293Y|AKT2_uc010egu.1_Missense_Mutation_p.H293Y|AKT2_uc002one.2_Missense_Mutation_p.H251Y	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	355	Protein kinase.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			AGGCGCTCGTGGTCCTGGTTG	0.627000			A		ovarian|pancreatic 								45	41					0	0	0.014410	0	0
ZNF574	64763	broad.mit.edu	37	19	42584406	42584406	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:42584406C>T	uc002osm.3	+	2	1817	c.1648C>T	c.(1648-1650)CCC>TCC	p.P550S	ZNF574_uc002osk.3_Missense_Mutation_p.P640S	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	550					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				AGGAGAGCGGCCCTACCGGTG	0.652000													26	107					0	0	0.021523	0	0
ZNF221	7638	broad.mit.edu	37	19	44469185	44469185	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:44469185C>T	uc002oxx.2	+	4	493	c.165C>T	c.(163-165)TAC>TAT	p.Y55Y	ZNF221_uc010ejb.1_Silent_p.Y55Y|ZNF221_uc010xws.1_Silent_p.Y55Y	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				GGAAGCTGTACCGAGATGTGA	0.517000													25	230					0	0	0.010818	0	0
ZNF180	7733	broad.mit.edu	37	19	44981860	44981860	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:44981860G>A	uc002ozf.3	-	5	1120	c.838C>T	c.(838-840)CAA>TAA	p.Q280*	ZNF180_uc002ozh.3_5'UTR|ZNF180_uc002ozi.3_Nonsense_Mutation_p.Q253*|ZNF180_uc002ozg.3_Nonsense_Mutation_p.Q279*|ZNF180_uc010ejm.2_Nonsense_Mutation_p.Q255*	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CAAAAAGATTGAATACGGTCA	0.358000													18	61					0	0	0.010504	0	0
SYMPK	8189	broad.mit.edu	37	19	46355791	46355791	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:46355791G>A	uc002pdn.2	-	4	419	c.174C>T	c.(172-174)GTC>GTT	p.V58V	SYMPK_uc002pdo.1_Silent_p.V58V|SYMPK_uc002pdp.1_Silent_p.V58V|SYMPK_uc002pdq.1_Silent_p.V58V	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	58	Interaction with HSF1.				cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		TCAGCTCCTGGACCTGGAAGG	0.428000													10	80					0	0	0.013537	0	0
MYPOP	339344	broad.mit.edu	37	19	46393885	46393885	+	Missense_Mutation	SNP	G	A	A	rs147675790	by1000genomes	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:46393885G>A	uc002pdt.2	-	3	1283	c.1196C>T	c.(1195-1197)CCG>CTG	p.P399L		NM_001012643	NP_001012661	Q86VE0	MYPOP_HUMAN	Myb protein P42POP	399						nucleus	DNA binding				0						TAGATTTCACGGAGATTTCCA	0.642000													11	69					0	0	0.020292	0	0
HIF3A	64344	broad.mit.edu	37	19	46811540	46811540	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:46811540G>A	uc002peh.2	+	4	455	c.426G>A	c.(424-426)CAG>CAA	p.Q142Q	HIF3A_uc002pef.1_Silent_p.Q142Q|HIF3A_uc002peg.3_Silent_p.Q142Q|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Silent_p.Q86Q|HIF3A_uc002pej.1_Silent_p.Q73Q|HIF3A_uc002pek.2_Silent_p.Q86Q|HIF3A_uc010xxy.1_Silent_p.Q73Q|HIF3A_uc002pel.2_Silent_p.Q140Q|HIF3A_uc010xxz.1_Silent_p.Q91Q	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	142	PAS 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		AGGAGCTTCAGGACGCCCTGA	0.502000													56	72					0	0	0.014410	0	0
SULT2B1	6820	broad.mit.edu	37	19	49102448	49102448	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:49102448C>T	uc002pjl.2	+	7	964	c.883C>T	c.(883-885)CGT>TGT	p.R295C	SULT2B1_uc002pjm.2_Missense_Mutation_p.R280C	NM_177973	NP_814444	O00204	ST2B1_HUMAN	sulfotransferase family, cytosolic, 2B, member 1	295					3'-phosphoadenosine 5'-phosphosulfate metabolic process|steroid metabolic process|xenobiotic metabolic process	cytosol	alcohol sulfotransferase activity|protein binding|steroid sulfotransferase activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000115)|all cancers(93;0.000147)|GBM - Glioblastoma multiforme(486;0.00707)|Epithelial(262;0.0178)		AGCCTTCGATCGTGCCTACCG	0.667000													4	24					0	0	0.009096	0	0
PRR12	57479	broad.mit.edu	37	19	50099390	50099390	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:50099390C>T	uc002poo.3	+	4	1798	c.1798C>T	c.(1798-1800)CTG>TTG	p.L600L		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		AGCGCCTTTCCTGGCACCTCC	0.687000													4	54					0	0	0.009096	0	0
MED25	81857	broad.mit.edu	37	19	50335259	50335259	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:50335259G>A	uc002ppw.1	+	11	1350	c.1297G>A	c.(1297-1299)GTG>ATG	p.V433M	MED25_uc010ybe.1_Missense_Mutation_p.V220M|MED25_uc002ppx.1_Missense_Mutation_p.V214M	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	433	Interaction with VP16.|Interaction with CREBBP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		CCAGGTCTACGTGAATCATGG	0.602000													12	70					0	0	0.016723	0	0
ZNF600	162966	broad.mit.edu	37	19	53269236	53269236	+	Silent	SNP	G	A	A	rs151077073		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:53269236G>A	uc002qab.3	-	3	2059	c.1773C>T	c.(1771-1773)TTC>TTT	p.F591F		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	591	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		AATTACGCACGAAAGCCTTGT	0.423000													27	197					0	0	0.005443	0	0
CACNG6	59285	broad.mit.edu	37	19	54496162	54496162	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:54496162G>A	uc002qct.2	+	1	621	c.31G>A	c.(31-33)GAG>AAG	p.E11K	CACNG6_uc002qcu.2_Missense_Mutation_p.E11K|CACNG6_uc002qcv.2_Missense_Mutation_p.E11K	NM_145814	NP_665813	Q9BXT2	CCG6_HUMAN	voltage-dependent calcium channel gamma-6	11						voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(2)	2	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.168)		CCTGCAAGAGGAGAAccggcg	0.562000													14	24					0	0	0.006122	0	0
LILRP2	79166	broad.mit.edu	37	19	55222251	55222251	+	RNA	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:55222251G>A	uc002qgs.1	+	1		c.2651G>A			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CTGCCCCCAGGAGAGCTCAGG	0.632000													5	18					0	0	0.014758	0	0
TMEM150B	284417	broad.mit.edu	37	19	55828329	55828329	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:55828329C>T	uc010esw.1	-	7	503	c.330G>A	c.(328-330)AAG>AAA	p.K110K	TMEM150B_uc010yfu.1_Silent_p.K110K|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	110	Extracellular (Potential).					integral to membrane					0						GCCGCTGGTTCTTTTCCTGGG	0.597000													11	9					0	0	0.016723	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56702275	56702275	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:56702275C>T	uc010ygh.1	-	3	670	c.670G>A	c.(670-672)GAT>AAT	p.D224N		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	224					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TCCTTCAGATCCTTCTCCAAG	0.502000													55	62					0	0	0.014410	0	0
PEG3	5178	broad.mit.edu	37	19	57326480	57326480	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:57326480C>A	uc002qnu.2	-	7	3681	c.3330G>T	c.(3328-3330)GAG>GAT	p.E1110D	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E1081D|PEG3_uc002qnv.2_Missense_Mutation_p.E1110D|PEG3_uc002qnw.2_Missense_Mutation_p.E986D|PEG3_uc002qnx.2_Missense_Mutation_p.E984D|PEG3_uc010etr.2_Missense_Mutation_p.E1110D	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1110	C2H2-type 6.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGCCACAGTCCTCACATTCAT	0.502000													43	60					1.86633e-21	1.96521e-21	0.014410	1	0
DUXA	503835	broad.mit.edu	37	19	57670603	57670603	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr19:57670603C>T	uc002qoa.1	-	3	269	c.224G>A	c.(223-225)AGA>AAA	p.R75K		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	75						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		AGCTTCTGGTCTTTTCTGGAA	0.423000													28	39					0	0	0.013726	0	0
COLEC11	78989	broad.mit.edu	37	2	3691490	3691490	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:3691490C>T	uc002qya.2	+	7	746	c.598C>T	c.(598-600)CGT>TGT	p.R200C	COLEC11_uc002qxz.2_Missense_Mutation_p.R197C|COLEC11_uc002qyb.2_Missense_Mutation_p.R176C|COLEC11_uc002qyc.2_Missense_Mutation_p.R176C|COLEC11_uc010ewo.2_Missense_Mutation_p.R152C|COLEC11_uc010ewp.2_Missense_Mutation_p.R174C|COLEC11_uc010ewq.2_Missense_Mutation_p.R150C|COLEC11_uc010ewr.2_Missense_Mutation_p.R150C|COLEC11_uc010ews.2_Missense_Mutation_p.R126C	NM_024027	NP_076932	Q9BWP8	COL11_HUMAN	collectin sub-family member 11 isoform a	200	C-type lectin.					collagen	mannose binding				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.127)		CGGCCTGGCCCGTGTCTTCAT	0.667000													12	25					0	0	0.010729	0	0
KCNF1	3754	broad.mit.edu	37	2	11053017	11053017	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:11053017C>T	uc002rax.2	+	1	955	c.465C>T	c.(463-465)GAC>GAT	p.D155D		NM_002236	NP_002227	Q9H3M0	KCNF1_HUMAN	potassium voltage-gated channel, subfamily F,	155	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.128)		TGGGCGTGGACGCAGCCGAGG	0.692000													3	34					0	0	0.009096	0	0
NCOA1	8648	broad.mit.edu	37	2	24974859	24974859	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:24974859C>T	uc002rfk.2	+	18	3973	c.3715C>T	c.(3715-3717)CCC>TCC	p.P1239S	NCOA1_uc010eye.2_Missense_Mutation_p.P1239S|NCOA1_uc002rfi.2_Missense_Mutation_p.P1088S|NCOA1_uc002rfj.2_Missense_Mutation_p.P1239S|NCOA1_uc002rfl.2_Missense_Mutation_p.P1239S|NCOA1_uc010eyf.2_Missense_Mutation_p.P132S	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1239									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGAATGGTTCCCCAAGGTGA	0.418000			T	PAX3	alveolar rhadomyosarcoma								39	58					0	0	0.014410	0	0
KIF3C	3797	broad.mit.edu	37	2	26203833	26203833	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:26203833C>T	uc002rgu.2	-	1	1611	c.954G>A	c.(952-954)CGG>CGA	p.R318R	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Silent_p.R318R	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	318	Kinesin-motor.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCTTGGAGTCCCGGTAGGGAA	0.592000													13	42					0	0	0.016723	0	0
PLB1	151056	broad.mit.edu	37	2	28805000	28805000	+	Silent	SNP	G	A	A	rs146417418		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:28805000G>A	uc002rmb.1	+	24	1632	c.1632G>A	c.(1630-1632)GAG>GAA	p.E544E	PLB1_uc010ezj.1_Intron|PLB1_uc002rmc.2_Silent_p.E232E|PLB1_uc002rmd.1_Silent_p.E54E	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	544	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TCCATGCTGAGGTACGGAGGC	0.537000													24	34					0	0	0.005443	0	0
GALNT14	79623	broad.mit.edu	37	2	31167740	31167740	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:31167740G>A	uc002rnr.2	-	8	1430	c.811C>T	c.(811-813)CCC>TCC	p.P271S	GALNT14_uc002rnq.2_Missense_Mutation_p.P251S|GALNT14_uc002rns.2_Missense_Mutation_p.P276S|GALNT14_uc010ymr.1_Missense_Mutation_p.P236S|GALNT14_uc010ezo.1_Missense_Mutation_p.P238S|GALNT14_uc010ezp.1_Intron	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	271	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGCTCCGTGGGGTCCAGGCGC	0.587000													29	50					0	0	0.015359	0	0
PRKD3	23683	broad.mit.edu	37	2	37543540	37543540	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:37543540C>T	uc002rqd.2	-	1	683	c.128G>A	c.(127-129)GGA>GAA	p.G43E	PRKD3_uc002rqf.1_Missense_Mutation_p.G43E	NM_005813	NP_005804	O94806	KPCD3_HUMAN	protein kinase D3	43					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(2)|ovary(1)|central_nervous_system(1)	4		all_hematologic(82;0.21)				ACTGAAGCTTCCATTAGAGAG	0.502000													22	63					0	0	0.016522	0	0
THADA	63892	broad.mit.edu	37	2	43779019	43779019	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:43779019G>A	uc002rsw.3	-	19	3208	c.2856C>T	c.(2854-2856)CTC>CTT	p.L952L	THADA_uc010far.2_Silent_p.L221L|THADA_uc002rsx.3_Silent_p.L952L|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Silent_p.L661L|THADA_uc010fat.1_Silent_p.L99L|THADA_uc002rta.2_Silent_p.L662L	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	952							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				ACATCAAAAGGAGCTTCTCTA	0.453000													26	37					0	0	0.007291	0	0
ABCG8	64241	broad.mit.edu	37	2	44102553	44102553	+	Splice_Site	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:44102553G>A	uc002rtq.2	+	11	1846	c.1756_splice	c.e11+1	p.V586_splice	ABCG8_uc010yoa.1_Splice_Site_p.V585_splice	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8						cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CTGTGGACAGGTAAGGCCTGC	0.547000													17	31					0	0	0.007413	0	0
PROM2	150696	broad.mit.edu	37	2	95954337	95954337	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:95954337G>A	uc002suh.1	+	22	2574	c.2441G>A	c.(2440-2442)AGC>AAC	p.S814N	PROM2_uc002sui.2_Missense_Mutation_p.S814N|PROM2_uc002suj.2_Missense_Mutation_p.S468N|PROM2_uc002suk.2_Missense_Mutation_p.S814N|PROM2_uc002sul.2_Missense_Mutation_p.S340N|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	814	Cytoplasmic (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						AAACGCCTCAGGTGAGGGGCT	0.617000													21	53					0	0	0.007291	0	0
SNRNP200	23020	broad.mit.edu	37	2	96944683	96944683	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:96944683G>A	uc002svu.2	-	37	5273	c.5187C>T	c.(5185-5187)GAC>GAT	p.D1729D	SNRNP200_uc002svt.2_Silent_p.D339D|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1729	Helicase C-terminal 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GCATACAGTGGTCCAGGTGAG	0.463000													36	67					0	0	0.011902	0	0
VWA3B	200403	broad.mit.edu	37	2	98906990	98906990	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:98906990G>A	uc002syo.2	+	23	3326	c.3062G>A	c.(3061-3063)GGA>GAA	p.G1021E	VWA3B_uc002sym.2_Missense_Mutation_p.G1021E|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.G678E|VWA3B_uc002syp.1_Missense_Mutation_p.G413E|VWA3B_uc002syq.1_Missense_Mutation_p.G297E|VWA3B_uc002syr.1_Missense_Mutation_p.G338E|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1021										ovary(3)|large_intestine(2)|skin(1)	6						AAATTGCAAGGAAATCCAACA	0.348000													5	12					0	0	0.014758	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965595	102965595	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:102965595G>A	uc002tbu.1	+	10	1445	c.1174G>A	c.(1174-1176)GAT>AAT	p.D392N	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	392	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						ATCCAGTACAGATGGGGCCAG	0.388000													33	57					0	0	0.008740	0	0
UXS1	80146	broad.mit.edu	37	2	106713260	106713260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:106713260G>A	uc002tdm.2	-	14	1143	c.1045C>T	c.(1045-1047)CAG>TAG	p.Q349*	UXS1_uc002tdk.2_Nonsense_Mutation_p.Q147*|UXS1_uc002tdl.2_Nonsense_Mutation_p.Q181*|UXS1_uc002tdn.2_Nonsense_Mutation_p.Q354*|UXS1_uc002tdo.2_Nonsense_Mutation_p.Q292*	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	349	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						GAGAGAAACTGAATTTCACTT	0.463000													4	6					0	0	0.014758	0	0
RGPD4	285190	broad.mit.edu	37	2	108487597	108487597	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:108487597A>C	uc010ywk.1	+	20	3219	c.3137A>C	c.(3136-3138)GAA>GCA	p.E1046A	RGPD4_uc002tdu.2_Missense_Mutation_p.E233A|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1046	RanBD1 1.				intracellular transport		binding			skin(2)	2						CAAATGCCTGAAAAAGTAGAA	0.383000													133	341					0	0	0.014410	0	0
RGPD4	285190	broad.mit.edu	37	2	108489194	108489194	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:108489194G>A	uc010ywk.1	+	20	4816	c.4734G>A	c.(4732-4734)TTG>TTA	p.L1578L	RGPD4_uc002tdu.2_Silent_p.L765L|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1578					intracellular transport		binding			skin(2)	2						ATGCATCTTTGAAAAGTAACA	0.353000													94	142					0	0	0.014410	0	0
IL1F10	84639	broad.mit.edu	37	2	113832941	113832941	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:113832941G>A	uc002tiu.2	+	5	534	c.459G>A	c.(457-459)TAG>TAA	p.*153*	IL1F10_uc002tiv.2_Silent_p.*153*|IL1F10_uc002tiw.2_Silent_p.*145*	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	153						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						AGAGCTGGTAGGGAGACAGGA	0.463000													25	33					0	0	0.021523	0	0
IL1RN	3557	broad.mit.edu	37	2	113890416	113890416	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:113890416G>A	uc002tjb.2	+	4	566	c.502G>A	c.(502-504)GTC>ATC	p.V168I	IL1RN_uc002tix.1_RNA|IL1RN_uc002tiy.2_Missense_Mutation_p.V134I|IL1RN_uc002tiz.2_Missense_Mutation_p.V171I|IL1RN_uc002tja.2_Missense_Mutation_p.V150I	NM_173842	NP_776214	P18510	IL1RA_HUMAN	interleukin 1 receptor antagonist isoform 1	168					immune response|inflammatory response|response to glucocorticoid stimulus	centrosome|extracellular space|nucleus|plasma membrane	cytokine activity|interleukin-1 receptor antagonist activity			skin(2)	2					Anakinra(DB00026)	AGGCGTCATGGTCACCAAATT	0.592000									Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				35	97					0	0	0.007835	0	0
MYO7B	4648	broad.mit.edu	37	2	128335766	128335766	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:128335766C>T	uc002top.2	+	9	961	c.908C>T	c.(907-909)TCG>TTG	p.S303L		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	303	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CACATCCGCTCGGCCATGAAG	0.607000													3	50					0	0	0.004672	0	0
LCT	3938	broad.mit.edu	37	2	136567182	136567182	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:136567182G>A	uc002tuu.1	-	8	2746	c.2735C>T	c.(2734-2736)TCC>TTC	p.S912F		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	912	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCGGAAGAGGACACGCCCCA	0.517000													24	59					0	0	0.021523	0	0
CACNB4	785	broad.mit.edu	37	2	152737314	152737314	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:152737314C>T	uc002tya.2	-	4	458	c.390G>A	c.(388-390)GAG>GAA	p.E130E	CACNB4_uc002txy.2_Silent_p.E96E|CACNB4_uc002txz.2_Silent_p.E112E|CACNB4_uc010fnz.2_Silent_p.E130E|CACNB4_uc002tyb.2_Silent_p.E96E	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	130	SH3.				axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	CTACATTTACCTCTTTAATAT	0.488000													6	11					0	0	0.001168	0	0
GALNT5	11227	broad.mit.edu	37	2	158153009	158153009	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:158153009G>A	uc002tzg.2	+	5	2236	c.1981G>A	c.(1981-1983)GAA>AAA	p.E661K	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	661	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CAGAATTAAAGAAACTGATAC	0.343000													11	29					0	0	0.013537	0	0
PLA2R1	22925	broad.mit.edu	37	2	160885424	160885424	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:160885424C>T	uc002ube.1	-	5	1099	c.892G>A	c.(892-894)GAT>AAT	p.D298N	PLA2R1_uc010zcp.1_Missense_Mutation_p.D298N|PLA2R1_uc002ubf.2_Missense_Mutation_p.D298N	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	298	Extracellular (Potential).|C-type lectin 1.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GCGTGTTCATCCAGCTGATTG	0.483000													4	33					0	0	0.003163	0	0
SCN9A	6335	broad.mit.edu	37	2	167141030	167141030	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:167141030G>A	uc010fpl.2	-	12	2248	c.1907C>T	c.(1906-1908)GCC>GTC	p.A636V	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.A507V|SCN9A_uc002uds.1_Missense_Mutation_p.A507V|SCN9A_uc002udt.1_Missense_Mutation_p.A507V	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	636						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	GAGCATGAGGGCTGAGCGTCC	0.542000													15	34					0	0	0.006122	0	0
XIRP2	129446	broad.mit.edu	37	2	168103758	168103758	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:168103758G>A	uc002udx.2	+	8	5874	c.5856G>A	c.(5854-5856)GTG>GTA	p.V1952V	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.V1777V|XIRP2_uc010fpq.2_Silent_p.V1730V|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1777					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTAAAGCTGTGATGGCAGGAT	0.408000													11	30					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179605416	179605416	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:179605416C>T	uc010zfh.1	-	46	12255	c.12031G>A	c.(12031-12033)GAG>AAG	p.E4011K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3944K|TTN_uc010zfj.1_Missense_Mutation_p.E3819K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3939							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGATTTTCTCGGTATCTGAT	0.413000													23	56					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179612932	179612932	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:179612932G>A	uc002unb.2	-	46	14419	c.14195C>T	c.(14194-14196)TCA>TTA	p.S4732L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGGGCACATGATTCACTATA	0.353000													17	29					0	0	0.007413	0	0
CCDC141	285025	broad.mit.edu	37	2	179730554	179730554	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:179730554C>T	uc002unf.1	-	7	996	c.939G>A	c.(937-939)GAG>GAA	p.E313E		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	313	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCCGTCCATACTCCTCAGCTT	0.527000													98	271					0	0	0.014410	0	0
ZNF385B	151126	broad.mit.edu	37	2	180311376	180311376	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:180311376C>T	uc002unn.3	-	7	1396	c.792G>A	c.(790-792)AAG>AAA	p.K264K	ZNF385B_uc002unj.2_Silent_p.K162K|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Silent_p.K161K|ZNF385B_uc002unm.2_Silent_p.K188K	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	264						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			CATTTGTGCTCTTGGAGGGAG	0.478000													35	86					0	0	0.006230	0	0
COL3A1	1281	broad.mit.edu	37	2	189859820	189859820	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:189859820G>A	uc002uqj.1	+	21	1621	c.1504G>A	c.(1504-1506)GAA>AAA	p.E502K		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	502	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CATCCCAGGAGAAAAGGTAGA	0.388000													18	59					0	0	0.010504	0	0
ANKAR	150709	broad.mit.edu	37	2	190608180	190608180	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:190608180G>A	uc002uqw.1	+	20	3777	c.3777G>A	c.(3775-3777)CTG>CTA	p.L1259L	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Intron	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1330						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			AACAAACACTGGTGGGACTTC	0.353000													9	16					0	0	0.008291	0	0
DNAH7	56171	broad.mit.edu	37	2	196636561	196636561	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:196636561G>A	uc002utj.3	-	61	11357	c.11256C>T	c.(11254-11256)GTC>GTT	p.V3752V	DNAH7_uc002uti.3_Silent_p.V235V	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3752					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGTCACTAGCGACCTCATTCA	0.428000													64	162					0	0	0.014410	0	0
SF3B1	23451	broad.mit.edu	37	2	198264885	198264885	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:198264885T>C	uc002uue.2	-	20	2955	c.2907A>G	c.(2905-2907)AAA>AAG	p.K969K		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	969					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			GTCCCATCAATTTTTCCTATA	0.338000													20	57					0	0	0.016522	0	0
SATB2	23314	broad.mit.edu	37	2	200137016	200137016	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:200137016G>A	uc002uuy.1	-	11	2937	c.2120C>T	c.(2119-2121)TCC>TTC	p.S707F	SATB2_uc010fsq.1_Missense_Mutation_p.S589F|SATB2_uc002uuz.1_Missense_Mutation_p.S707F|SATB2_uc002uva.1_Missense_Mutation_p.S707F	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	707						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						CATCTCCTCGGAGCCTTCCTC	0.542000													31	65					0	0	0.012213	0	0
SATB2	23314	broad.mit.edu	37	2	200213782	200213782	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:200213782G>A	uc002uuy.1	-	7	1632	c.815C>T	c.(814-816)CCT>CTT	p.P272L	SATB2_uc010fsq.1_Missense_Mutation_p.P154L|SATB2_uc002uuz.1_Missense_Mutation_p.P272L|SATB2_uc002uva.1_Missense_Mutation_p.P272L|SATB2_uc002uvb.1_Missense_Mutation_p.P15L	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	272						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTGGCTGTGAGGAGACTGTTC	0.498000													27	71					0	0	0.007291	0	0
IGFBP5	3488	broad.mit.edu	37	2	217543762	217543762	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:217543762C>T	uc002vgj.3	-	2	1152	c.378G>A	c.(376-378)GAG>GAA	p.E126E		NM_000599	NP_000590	P24593	IBP5_HUMAN	insulin-like growth factor binding protein 5	126					negative regulation of insulin-like growth factor receptor signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|negative regulation of translation|signal transduction		insulin-like growth factor I binding				0		Renal(323;0.0822)		Epithelial(149;2.1e-06)|all cancers(144;0.000165)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCTCGGCCATCTCAGAGGTGG	0.632000													16	64					0	0	0.008871	0	0
ARPC2	10109	broad.mit.edu	37	2	219114119	219114119	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:219114119C>T	uc002vhd.2	+	9	821	c.709C>T	c.(709-711)CGA>TGA	p.R237*	ARPC2_uc002vhe.2_Nonsense_Mutation_p.R237*|ARPC2_uc002vhf.2_Nonsense_Mutation_p.R123*	NM_152862	NP_690601	O15144	ARPC2_HUMAN	actin related protein 2/3 complex subunit 2	237					cellular component movement	Arp2/3 protein complex|cell projection|Golgi apparatus	actin binding|structural constituent of cytoskeleton			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;1.21e-06)|all cancers(144;0.000212)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0103)		TGCCAGTGCTCGAGACAACAC	0.547000													25	46					0	0	0.006320	0	0
CHPF	79586	broad.mit.edu	37	2	220406541	220406541	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:220406541G>A	uc002vmc.3	-	2	912	c.685C>T	c.(685-687)CCC>TCC	p.P229S	CHPF_uc010zlh.1_Missense_Mutation_p.P67S|CHPF_uc002vmd.3_Missense_Mutation_p.P229S|TMEM198_uc002vme.2_5'Flank|TMEM198_uc002vmf.2_5'Flank	NM_024536	NP_078812	Q8IZ52	CHSS2_HUMAN	chondroitin polymerizing factor	229	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity|protein binding				0		Renal(207;0.0183)		Epithelial(149;3.02e-08)|all cancers(144;3.41e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		AAGTCCTGGGGCCGGCCCAGG	0.701000											OREG0015229	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	8					0	0	0.001984	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882732	228882732	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:228882732C>T	uc002vpq.2	-	7	2885	c.2838G>A	c.(2836-2838)GCG>GCA	p.A946A	SPHKAP_uc002vpp.2_Silent_p.A946A|SPHKAP_uc010zlx.1_Silent_p.A946A	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	946	PKA-RII subunit binding domain (By similarity).					cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CAAGGCAAATCGCTGCAATTT	0.473000													51	80					0	0	0.014410	0	0
CHRND	1144	broad.mit.edu	37	2	233399984	233399984	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:233399984C>T	uc002vsw.2	+	12	1520	c.1516C>T	c.(1516-1518)CCC>TCC	p.P506S	CHRND_uc010zmg.1_Missense_Mutation_p.P491S|CHRND_uc010fyc.2_Missense_Mutation_p.P379S|CHRND_uc010zmh.1_Missense_Mutation_p.P312S	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	506					muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		TCCTGGGGACCCCTACTCCTA	0.602000													27	78					0	0	0.017118	0	0
USP40	55230	broad.mit.edu	37	2	234402079	234402079	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:234402079G>A	uc010zmr.1	-	24	2942	c.2942C>T	c.(2941-2943)TCC>TTC	p.S981F	USP40_uc010zms.1_Missense_Mutation_p.S79F|USP40_uc002vun.2_Missense_Mutation_p.S145F|USP40_uc002vuo.1_Missense_Mutation_p.S145F	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	969					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		ACCTTGGCTGGAAGTGGCTCT	0.478000													15	27					0	0	0.008871	0	0
SH3BP4	23677	broad.mit.edu	37	2	235950486	235950486	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr2:235950486C>T	uc002vvp.2	+	4	1466	c.1073C>T	c.(1072-1074)GCC>GTC	p.A358V	SH3BP4_uc010fym.2_Missense_Mutation_p.A358V|SH3BP4_uc002vvq.2_Missense_Mutation_p.A358V	NM_014521	NP_055336	Q9P0V3	SH3B4_HUMAN	SH3-domain binding protein 4	358					endocytosis	clathrin-coated vesicle|coated pit|nucleus	protein binding			skin(3)|ovary(1)	4		Breast(86;0.000332)|Renal(207;0.00339)|all_lung(227;0.00458)|all_hematologic(139;0.0296)|Lung NSC(271;0.0419)		Epithelial(121;7.66e-20)|BRCA - Breast invasive adenocarcinoma(100;0.000402)|Lung(119;0.00299)|LUSC - Lung squamous cell carcinoma(224;0.00645)|GBM - Glioblastoma multiforme(43;0.237)		TCCATGAAAGCCCTGCTGGAC	0.627000													13	36					0	0	0.016723	0	0
ANGPT4	51378	broad.mit.edu	37	20	870890	870890	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:870890G>A	uc002wei.2	-	2	534	c.431C>T	c.(430-432)GCC>GTC	p.A144V	ANGPT4_uc010zpn.1_Missense_Mutation_p.A138V	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	144	Potential.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						GCGGATCTGGGCAGTGGTCTG	0.617000													17	41					0	0	0.010504	0	0
NOP56	10528	broad.mit.edu	37	20	2636095	2636095	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:2636095G>A	uc002wgh.2	+	6	747	c.694G>A	c.(694-696)GAG>AAG	p.E232K	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_Missense_Mutation_p.E66K|NOP56_uc002wgm.1_5'Flank|SNORD86_uc010gaq.1_5'Flank|SNORD56_uc010gar.2_5'Flank|SNORD57_uc002wgo.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	232					rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						GGAGAAGCTGGAGGAGCTGAC	0.537000													35	36					0	0	0.019004	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128839	3128839	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:3128839T>A	uc002whz.2	-	2	1189	c.878A>T	c.(877-879)CAG>CTG	p.Q293L	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	293					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						CTGGGATACCTGACGATTTTC	0.338000													26	53					0	0	0.009535	0	0
MACROD2	140733	broad.mit.edu	37	20	15210650	15210650	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:15210650T>C	uc002wou.2	+	6	747	c.483T>C	c.(481-483)CTT>CTC	p.L161L	MACROD2_uc002wot.2_Silent_p.L161L|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	161	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				AGGAAGACCTTGCAAATTGCT	0.368000													12	34					0	0	0.003163	0	0
FOXA2	3170	broad.mit.edu	37	20	22563676	22563676	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:22563676G>A	uc002wsn.2	-	3	376	c.186C>T	c.(184-186)TCC>TCT	p.S62S	FOXA2_uc002wsm.2_Silent_p.S68S	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	62	Transactivation domain 1 (By similarity).				cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					ACATGTTCATGGAGCCCGCGC	0.706000													23	77					0	0	0.021523	0	0
C20orf114	92747	broad.mit.edu	37	20	31889048	31889048	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:31889048T>C	uc002wyw.1	+	9	918	c.757T>C	c.(757-759)TTG>CTG	p.L253L	C20orf114_uc002wyx.1_5'Flank	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	253						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						GGCCAAGTTGTTGGACTCACA	0.473000													30	125					0	0	0.009535	0	0
SNX21	90203	broad.mit.edu	37	20	44469643	44469644	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:44469643_44469644CC>TT	uc002xpv.1	+	4	902_903	c.813_814CC>TT	c.(811-816)GCCCAG>GCTTAG	p.Q272*	SNX21_uc002xps.1_Intron|SNX21_uc002xpt.1_3'UTR|SNX21_uc002xpu.1_3'UTR|SNX21_uc002xpw.1_Nonsense_Mutation_p.Q83*|SNX21_uc002xpx.2_Nonsense_Mutation_p.Q262*|SNX21_uc010zxd.1_3'UTR|SNX21_uc002xpy.1_Nonsense_Mutation_p.Q83*|SNX21_uc002xpz.1_Nonsense_Mutation_p.Q83*	NM_033421	NP_219489	Q969T3	SNX21_HUMAN	sorting nexin 21 isoform a	272					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding			breast(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				AGCTGCAAGCCCAGCTGGGCAC	0.693000													4	8					0	0	0.004672	0	0
ZSWIM3	140831	broad.mit.edu	37	20	44505977	44505977	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:44505977C>T	uc002xqd.2	+	2	983	c.780C>T	c.(778-780)ACC>ACT	p.T260T	ZSWIM3_uc010zxg.1_Silent_p.T254T	NM_080752	NP_542790	Q96MP5	ZSWM3_HUMAN	zinc finger, SWIM domain containing 3	260							zinc ion binding			ovary(2)	2		Myeloproliferative disorder(115;0.0122)				AGACAGTCACCTCTGTGGCCA	0.527000													19	69					0	0	0.014323	0	0
TAF4	6874	broad.mit.edu	37	20	60585143	60585143	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr20:60585143G>T	uc002ybs.2	-	4	1720	c.1720C>A	c.(1720-1722)CGC>AGC	p.R574S		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	574					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GGTACCGTGCGCTGAGGAGTC	0.612000													11	59					1.5842e-08	1.64992e-08	0.016723	1	0
RIPK4	54101	broad.mit.edu	37	21	43161492	43161492	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr21:43161492G>A	uc002yzn.1	-	8	1909	c.1861C>T	c.(1861-1863)CGC>TGC	p.R621C		NM_020639	NP_065690	P57078	RIPK4_HUMAN	ankyrin repeat domain 3	621						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|skin(1)	7						ATGAGGATGCGGGCCACGCGG	0.692000													13	82					0	0	0.003163	0	0
CECR2	27443	broad.mit.edu	37	22	18028654	18028654	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:18028654C>A	uc010gqw.1	+	16	3737	c.3611C>A	c.(3610-3612)CCA>CAA	p.P1204Q	CECR2_uc010gqv.1_Missense_Mutation_p.P1062Q|CECR2_uc002zml.2_Missense_Mutation_p.P1063Q|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1246					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AGCGGACCCCCAGCCAGTCAG	0.557000													11	73					0.000978159	0.00100125	0.010729	1	0
COMT	1312	broad.mit.edu	37	22	19950226	19950226	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:19950226C>T	uc002zqu.2	+	3	426	c.177C>T	c.(175-177)ATC>ATT	p.I59I	COMT_uc002zqt.2_Silent_p.I59I|COMT_uc002zqv.2_Silent_p.I59I|COMT_uc002zqw.2_Silent_p.I59I|COMT_uc011ahd.1_Silent_p.I59I|COMT_uc002zqx.2_Silent_p.I59I	NM_000754	NP_000745	P21964	COMT_HUMAN	catechol-O-methyltransferase isoform MB-COMT	59					neurotransmitter biosynthetic process|neurotransmitter catabolic process|xenobiotic metabolic process	cytosol|integral to membrane|intracellular membrane-bounded organelle|microsome|plasma membrane|soluble fraction	catechol O-methyltransferase activity|magnesium ion binding|protein binding			ovary(1)	1	Colorectal(54;0.0993)				Carbidopa(DB00190)|Conjugated Estrogens(DB00286)|Diethylstilbestrol(DB00255)|Dobutamine(DB00841)|Dopamine(DB00988)|Entacapone(DB00494)|Folic Acid(DB00158)|L-Valine(DB00161)|Levodopa(DB01235)|Methyldopa(DB00968)|Modafinil(DB00745)|Morphine(DB00295)|S-Adenosylmethionine(DB00118)|Tolcapone(DB00323)	AGCAGCGCATCCTGAACCACG	0.617000													22	17					0	0	0.021523	0	0
MAPK1	5594	broad.mit.edu	37	22	22160206	22160206	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:22160206G>A	uc002zvn.2	-	3	665	c.425C>T	c.(424-426)TCA>TTA	p.S142L	MAPK1_uc002zvo.2_Missense_Mutation_p.S142L|MAPK1_uc010gtk.1_Missense_Mutation_p.S142L	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1	142	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	AACGTTAGCTGAATGGATATA	0.428000													12	162					0	0	0.013537	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868569	22868569	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:22868569C>T	uc002zwe.2	-	2	1639	c.1386G>A	c.(1384-1386)ACG>ACA	p.T462T	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	462	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		CCTCCTTCAACGTCAAAAACT	0.418000													7	104					0	0	0.001984	0	0
UPB1	51733	broad.mit.edu	37	22	24909338	24909338	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:24909338G>A	uc003aaf.2	+	5	627	c.506G>A	c.(505-507)CGA>CAA	p.R169Q	UPB1_uc003aae.2_Missense_Mutation_p.R101Q|UPB1_uc011ajt.1_Missense_Mutation_p.R169Q	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	169	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					ATCCTGGAACGAGACAGCGAG	0.488000													28	75					0	0	0.015359	0	0
MYO18B	84700	broad.mit.edu	37	22	26222468	26222468	+	Splice_Site	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:26222468T>C	uc003abz.1	+	14	3036	c.2786_splice	c.e14+2	p.R929_splice	MYO18B_uc003aca.1_Splice_Site_p.R810_splice|MYO18B_uc010guy.1_Splice_Site_p.R810_splice|MYO18B_uc010guz.1_Splice_Site_p.R810_splice|MYO18B_uc011aka.1_Splice_Site_p.R83_splice|MYO18B_uc011akb.1_Splice_Site_p.R442_splice	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB							nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CATCAACAGGTAACGGGGCCT	0.483000													59	85					0	0	0.014410	0	0
MYO18B	84700	broad.mit.edu	37	22	26242184	26242184	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:26242184G>A	uc003abz.1	+	19	3736	c.3486G>A	c.(3484-3486)AGG>AGA	p.R1162R	MYO18B_uc003aca.1_Silent_p.R1043R|MYO18B_uc010guy.1_Silent_p.R1044R|MYO18B_uc010guz.1_Silent_p.R1043R|MYO18B_uc011aka.1_Silent_p.R316R|MYO18B_uc011akb.1_Silent_p.R675R	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1162	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGGTGAGGAGGACCTTTGCCA	0.667000													8	52					0	0	0.006214	0	0
SLC35E4	339665	broad.mit.edu	37	22	31042757	31042757	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:31042757G>A	uc003ais.1	+	2	1437	c.792G>A	c.(790-792)CTG>CTA	p.L264L	SLC35E4_uc003ait.2_Intron	NM_001001479	NP_001001479	Q6ICL7	S35E4_HUMAN	solute carrier family 35, member E4	264	Helical; (Potential).|Leu-rich.					integral to membrane					0						GCTGCCTCCTGTCTGTTCTCT	0.667000													5	47					0	0	0.014758	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962739	37962739	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:37962739C>T	uc003asz.3	+	2	786	c.383C>T	c.(382-384)GCC>GTC	p.A128V		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	128					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					CTCAACCAGGCCGCCTACGAC	0.677000													91	109					0	0	0.014410	0	0
SMC1B	27127	broad.mit.edu	37	22	45765886	45765886	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:45765886G>A	uc003bgc.2	-	15	2420	c.2368C>T	c.(2368-2370)CGT>TGT	p.R790C	SMC1B_uc003bgd.2_Missense_Mutation_p.R790C|SMC1B_uc003bge.1_Missense_Mutation_p.R573C	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	790	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCAAATTCACGAATATTTTCC	0.239000													16	23					0	0	0.010504	0	0
CELSR1	9620	broad.mit.edu	37	22	46794535	46794535	+	Splice_Site	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:46794535C>T	uc003bhw.1	-	11	5413	c.5413_splice	c.e11-1	p.N1805_splice	CELSR1_uc011arc.1_Splice_Site_p.N126_splice	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1						central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CTGCCTTGTTCTGTGCGGAGA	0.592000													40	29					0	0	0.014410	0	0
SBF1	6305	broad.mit.edu	37	22	50886787	50886787	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr22:50886787G>A	uc003blh.2	-	38	5433	c.5238C>T	c.(5236-5238)TCC>TCT	p.S1746S	SBF1_uc003ble.2_Silent_p.S210S|SBF1_uc003blf.2_Silent_p.S222S|SBF1_uc011arx.1_Silent_p.S1384S	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1720					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GGCTCAGGGTGGAGCCCACGG	0.682000													3	95					0	0	0.009096	0	0
ITPR1	3708	broad.mit.edu	37	3	4776914	4776914	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:4776914T>C	uc003bqa.2	+	41	5624	c.5276T>C	c.(5275-5277)CTT>CCT	p.L1759P	ITPR1_uc010hca.1_Missense_Mutation_p.L1744P|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.L729P	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1807	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CAGTGTCACCTTGACAAGGAG	0.502000													21	47					0	0	0.014323	0	0
TADA3	10474	broad.mit.edu	37	3	9827040	9827040	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:9827040C>T	uc003bsx.1	-	7	1428	c.880G>A	c.(880-882)GGG>AGG	p.G294R	TADA3_uc010hcn.1_Missense_Mutation_p.G294R|TADA3_uc003bsy.2_Missense_Mutation_p.G294R|TADA3_uc003bsw.1_Missense_Mutation_p.G123R	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	294					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						GTGCTTGCCCCGTCAGCCCCT	0.507000													10	41					0	0	0.003163	0	0
C3orf20	84077	broad.mit.edu	37	3	14802992	14802992	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:14802992G>A	uc003byy.2	+	15	2769	c.2365G>A	c.(2365-2367)GGG>AGG	p.G789R	C3orf20_uc003byz.2_Missense_Mutation_p.G667R|C3orf20_uc003bza.2_Missense_Mutation_p.G667R|C3orf20_uc003bzb.1_Missense_Mutation_p.G290R|C3orf20_uc011avj.1_Missense_Mutation_p.G116R	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	789	Helical; (Potential).					cytoplasm|integral to membrane				ovary(3)|skin(1)	4						GTTTGCCGGGGGGAAGCTCAT	0.483000													7	44					0	0	0.004482	0	0
BTD	686	broad.mit.edu	37	3	15643376	15643376	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:15643376C>T	uc003cah.2	+	1	122	c.19C>T	c.(19-21)CAG>TAG	p.Q7*	HACL1_uc011avr.1_5'Flank|HACL1_uc011avs.1_5'Flank|HACL1_uc011avt.1_5'Flank|HACL1_uc003cag.2_5'Flank|HACL1_uc011avu.1_5'Flank|HACL1_uc010hep.2_5'Flank|HACL1_uc003caf.2_5'Flank|BTD_uc011avv.1_Intron|BTD_uc011avw.1_5'UTR|BTD_uc011avx.1_5'Flank	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	7					central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						TGCGCATATTCAGGGCGGAAG	0.667000													15	37					0	0	0.006122	0	0
SCN10A	6336	broad.mit.edu	37	3	38739432	38739432	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:38739432G>A	uc003ciq.2	-	27	5279	c.5279C>T	c.(5278-5280)ACC>ATC	p.T1760I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1760					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGCAGAAAAGGTAATAAACTG	0.512000													17	58					0	0	0.014323	0	0
NKTR	4820	broad.mit.edu	37	3	42680819	42680819	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:42680819C>T	uc003clo.2	+	13	3770	c.3623C>T	c.(3622-3624)ACC>ATC	p.T1208I	NKTR_uc003clm.1_Missense_Mutation_p.T955I|NKTR_uc003clp.2_Missense_Mutation_p.T955I|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.T1098I|NKTR_uc003clr.1_Missense_Mutation_p.T955I|NKTR_uc003cls.2_Missense_Mutation_p.T908I	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1208					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		GGAGAAAGTACCGGGAAGAAG	0.517000													16	41					0	0	0.004007	0	0
USP4	7375	broad.mit.edu	37	3	49339873	49339873	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:49339873G>A	uc003cwq.2	-	10	1310	c.1231C>T	c.(1231-1233)CGG>TGG	p.R411W	USP4_uc003cwo.2_Missense_Mutation_p.R141W|USP4_uc003cwp.2_Missense_Mutation_p.R141W|USP4_uc003cwr.2_Missense_Mutation_p.R364W	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	411					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TTCTTTACCCGGTTCAGATCT	0.458000													25	71					0	0	0.004656	0	0
DOCK3	1795	broad.mit.edu	37	3	51265425	51265425	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:51265425G>A	uc011bds.1	+	17	1576	c.1553G>A	c.(1552-1554)GGG>GAG	p.G518E		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	518	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		AAGGACAAAGGGGAAAAGAAA	0.428000													9	21					0	0	0.006214	0	0
RAD54L2	23132	broad.mit.edu	37	3	51697054	51697054	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:51697054C>T	uc011bdt.1	+	22	4147	c.4022C>T	c.(4021-4023)CCA>CTA	p.P1341L	RAD54L2_uc003dbh.2_Missense_Mutation_p.P930L|RAD54L2_uc011bdu.1_Missense_Mutation_p.P1035L|RAD54L2_uc003dbj.2_Missense_Mutation_p.P667L	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1341						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		CTGGTGTTTCCAGTGACTACT	0.592000													35	90					0	0	0.021022	0	0
FLNB	2317	broad.mit.edu	37	3	58087985	58087985	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:58087985C>T	uc003djj.2	+	9	1566	c.1401C>T	c.(1399-1401)GTC>GTT	p.V467V	FLNB_uc010hne.2_Silent_p.V467V|FLNB_uc003djk.2_Silent_p.V467V|FLNB_uc010hnf.2_Silent_p.V467V|FLNB_uc003djl.2_Silent_p.V298V|FLNB_uc003djm.2_Silent_p.V298V	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	467	Filamin 3.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCAAAGGCGTCCGTATCCGGG	0.502000													32	54					0	0	0.013726	0	0
OR5H14	403273	broad.mit.edu	37	3	97868547	97868547	+	Silent	SNP	C	T	T	rs148407623	by1000genomes	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:97868547C>T	uc003dsg.1	+	1	318	c.318C>T	c.(316-318)ATC>ATT	p.I106I		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	106	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CGTTTGCAATCAGTGTAACCA	0.398000													67	117					0	0	0.014410	0	0
C3orf26	84319	broad.mit.edu	37	3	99891217	99891217	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:99891217C>T	uc003dtl.2	+	8	780	c.637C>T	c.(637-639)CCG>TCG	p.P213S		NM_032359	NP_115735	Q9BQ75	CC026_HUMAN	hypothetical protein LOC84319	213							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(1)	1						TGTAGGAACTCCGGGGAGAAT	0.478000													36	28					0	0	0.008740	0	0
CCDC54	84692	broad.mit.edu	37	3	107096864	107096864	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:107096864G>A	uc003dwi.1	+	1	677	c.430G>A	c.(430-432)GAA>AAA	p.E144K		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	144	Potential.										0						GACAGAACTGGAAATTCAGAA	0.388000													23	32					0	0	0.014323	0	0
ILDR1	286676	broad.mit.edu	37	3	121712741	121712741	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:121712741G>A	uc003ees.2	-	7	961	c.855C>T	c.(853-855)GTC>GTT	p.V285V	ILDR1_uc003eeq.2_Silent_p.V253V|ILDR1_uc003eer.2_Silent_p.V241V|ILDR1_uc010hrg.2_Silent_p.V196V	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	285	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		AATACTCCAGGACACCATTGG	0.567000													21	32					0	0	0.004656	0	0
ZXDC	79364	broad.mit.edu	37	3	126191117	126191117	+	Silent	SNP	G	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:126191117G>C	uc003eiv.2	-	2	993	c.939C>G	c.(937-939)GCC>GCG	p.A313A	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Silent_p.A313A	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	313	C2H2-type 5.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		GGGAAAACAGGGCACTCACTG	0.458000													21	77					0	0	0.021523	0	0
Unknown	0	broad.mit.edu	37	3	126916060	126916060	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:126916060C>T	uc003eji.1	+	2	772	c.532C>T	c.(532-534)CCC>TCC	p.P178S						RecName: Full=Putative uncharacterized protein C3orf56;																		CAGAGGAGCTCCCTACTTGAA	0.647000													14	17					0	0	0.020292	0	0
DNAJC13	23317	broad.mit.edu	37	3	132218016	132218016	+	Silent	SNP	T	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:132218016T>G	uc003eor.2	+	37	4268	c.4203T>G	c.(4201-4203)ACT>ACG	p.T1401T		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1401							heat shock protein binding			ovary(1)|breast(1)	2						TTATTCGGACTATAACAATGG	0.378000													23	37					0	0	0.004656	0	0
MSL2	55167	broad.mit.edu	37	3	135871300	135871300	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:135871300C>T	uc003eqx.1	-	2	1156	c.423G>A	c.(421-423)GAG>GAA	p.E141E	MSL2_uc011bmb.1_Silent_p.E67E	NM_018133	NP_060603	Q9HCI7	MSL2_HUMAN	ring finger protein 184 isoform 1	141					histone H4-K16 acetylation	MSL complex	zinc ion binding			central_nervous_system(1)	1						TTTCTGTCTCCTCACAAAACA	0.388000													31	54					0	0	0.012213	0	0
PRR23B	389151	broad.mit.edu	37	3	138739067	138739067	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:138739067G>A	uc003esy.1	-	1	702	c.437C>T	c.(436-438)CCA>CTA	p.P146L		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	146										breast(1)	1						GGCGATCTCTGGGACAGATGC	0.667000													15	55					0	0	0.004990	0	0
OTOL1	131149	broad.mit.edu	37	3	161221501	161221501	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:161221501G>A	uc011bpb.1	+	4	1205	c.1205G>A	c.(1204-1206)CGA>CAA	p.R402Q		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	402	C1q.					collagen					0						CGACCTGCTCGAATCAGTCTG	0.468000													20	11					0	0	0.008871	0	0
LEPREL1	55214	broad.mit.edu	37	3	189838082	189838082	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:189838082G>A	uc011bsk.1	-	1	827	c.439C>T	c.(439-441)CGC>TGC	p.R147C	LEPREL1_uc003fsg.2_Intron	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	147					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	GGCACTCTGCGCTGGAAGTCG	0.667000													4	16					0	0	0.001168	0	0
MUC4	4585	broad.mit.edu	37	3	195515077	195515077	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr3:195515077T>C	uc011bto.1	-	2	3834	c.3374A>G	c.(3373-3375)GAC>GGC	p.D1125G	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAGGAAGTGTCGGTGACAGG	0.557000													2	3					0	0	0.004672	0	0
WHSC1	7468	broad.mit.edu	37	4	1919900	1919900	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:1919900C>T	uc003gdz.3	+	5	1136	c.960C>T	c.(958-960)GCC>GCT	p.A320A	WHSC1_uc003geb.3_Silent_p.A320A|WHSC1_uc003gec.3_Silent_p.A320A|WHSC1_uc003ged.3_Silent_p.A320A|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Silent_p.A320A|WHSC1_uc003gdy.1_Silent_p.A320A|WHSC1_uc010icd.1_Silent_p.A320A|WHSC1_uc003gea.1_Silent_p.A320A|WHSC1_uc010ice.1_Silent_p.A320A|WHSC1_uc003geh.1_Silent_p.A320A	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	320					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		AATTGAGGGCCCAGTGGGAAA	0.438000			T	IGH@	MM								27	26					0	0	0.007291	0	0
ARAP2	116984	broad.mit.edu	37	4	36069567	36069567	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:36069567G>A	uc003gsq.1	-	33	5415	c.5077C>T	c.(5077-5079)CTT>TTT	p.L1693F	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1693					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCTTTTGGAAGGGTTCTTGAC	0.348000													14	49					0	0	0.004007	0	0
EXOC1	55763	broad.mit.edu	37	4	56734621	56734621	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:56734621G>A	uc003hbe.1	+	5	693	c.535G>A	c.(535-537)GAA>AAA	p.E179K	EXOC1_uc003hbf.1_Missense_Mutation_p.E179K|EXOC1_uc003hbg.1_Missense_Mutation_p.E179K	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	179					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					GGAAGGCTGTGAATATGCAAT	0.403000													49	51					0	0	0.014410	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361118	70361118	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:70361118G>A	uc003hek.3	-	1	509	c.462C>T	c.(460-462)TTC>TTT	p.F154F	UGT2B4_uc011cap.1_Silent_p.F18F|UGT2B4_uc003hel.3_Silent_p.F154F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	154					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CACCAAAGGGGAAAACAGCAT	0.408000													9	23					0	0	0.008291	0	0
BMP3	651	broad.mit.edu	37	4	81966920	81966920	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:81966920C>T	uc003hmg.3	+	2	665	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	115					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						GACTGTATATCTTCAATCTGA	0.323000													5	26					0	0	0.001168	0	0
NDST4	64579	broad.mit.edu	37	4	115754820	115754820	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:115754820C>T	uc003ibu.2	-	12	3017	c.2338G>A	c.(2338-2340)GAT>AAT	p.D780N	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	780	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TGGACTTCATCCATCACAGTA	0.363000													5	31					0	0	0.001168	0	0
NDST3	9348	broad.mit.edu	37	4	119161842	119161842	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:119161842C>T	uc003ibx.2	+	11	2685	c.2282C>T	c.(2281-2283)CCA>CTA	p.P761L		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	761	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TATTTCCCCCCATTTCAGGTA	0.438000													7	26					0	0	0.001984	0	0
FABP2	2169	broad.mit.edu	37	4	120240779	120240779	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:120240779C>T	uc003icw.2	-	3	319	c.260G>A	c.(259-261)GGA>GAA	p.G87E		NM_000134	NP_000125	P12104	FABPI_HUMAN	intestinal fatty acid binding protein 2	87							fatty acid binding			ovary(1)	1						AAGTTTATTTCCCTCAAGGCT	0.269000													8	22					0	0	0.003080	0	0
FAT4	79633	broad.mit.edu	37	4	126373645	126373645	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:126373645C>T	uc003ifj.3	+	9	11474	c.11474C>T	c.(11473-11475)TCC>TTC	p.S3825F	FAT4_uc011cgp.1_Missense_Mutation_p.S2123F|FAT4_uc003ifi.1_Missense_Mutation_p.S1303F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3825	Extracellular (Potential).|EGF-like 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCTGTGAGCTCCGTATTAAAA	0.512000													14	24					0	0	0.004990	0	0
MAML3	55534	broad.mit.edu	37	4	140810909	140810909	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:140810909G>A	uc003ihz.1	-	3	2421	c.1669C>T	c.(1669-1671)CTG>TTG	p.L557L	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	557	Asn-rich.|Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GTCTTCTGCAGGTTGTTTGCC	0.408000													81	192					0	0	0.014410	0	0
DCHS2	54798	broad.mit.edu	37	4	155241615	155241615	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:155241615G>A	uc003inw.2	-	14	3571	c.3571C>T	c.(3571-3573)CCA>TCA	p.P1191S		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1191	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CCTTCGTCTGGATCGTGAGCA	0.443000													46	74					0	0	0.014410	0	0
KLKB1	3818	broad.mit.edu	37	4	187175880	187175880	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr4:187175880C>T	uc003iyy.2	+	12	1523	c.1452C>T	c.(1450-1452)ATC>ATT	p.I484I	KLKB1_uc011clc.1_Silent_p.I282I|KLKB1_uc011cld.1_Silent_p.I446I	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	484	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		ATCATGATATCGCCTTGATAA	0.343000													8	33					0	0	0.003080	0	0
DNAH5	1767	broad.mit.edu	37	5	13766132	13766133	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13766132_13766133CC>TT	uc003jfd.2	-	59	10095_10096	c.10053_10054GG>AA	c.(10051-10056)CAGGAA>CAAAAA	p.E3352K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3352	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTAAGGATTCCTGCCAGGAGG	0.446000									Kartagener_syndrome				15	78					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13794093	13794093	+	Silent	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13794093A>G	uc003jfd.2	-	48	8004	c.7962T>C	c.(7960-7962)GTT>GTC	p.V2654V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2654	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATCAATAAAAACAGTCATCT	0.348000									Kartagener_syndrome				20	29					0	0	0.010504	0	0
DNAH5	1767	broad.mit.edu	37	5	13823471	13823471	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13823471C>T	uc003jfd.2	-	40	6630	c.6588G>A	c.(6586-6588)GAG>GAA	p.E2196E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2196					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGGTTCATCCTCATCAATCT	0.378000									Kartagener_syndrome				18	34					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13839571	13839571	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13839571C>T	uc003jfd.2	-	35	5818	c.5776G>A	c.(5776-5778)GAA>AAA	p.E1926K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1926	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCAGAATCTTCGTTAAAGTAA	0.383000									Kartagener_syndrome				5	48					0	0	0.014758	0	0
DNAH5	1767	broad.mit.edu	37	5	13911564	13911564	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13911564G>A	uc003jfd.2	-	12	1617	c.1575C>T	c.(1573-1575)TTC>TTT	p.F525F	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	525	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTGGTCTAGGAAATTGTATT	0.308000									Kartagener_syndrome				12	60					0	0	0.020292	0	0
CDH18	1016	broad.mit.edu	37	5	19721488	19721488	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:19721488C>T	uc003jgc.2	-	4	988	c.611G>A	c.(610-612)GGA>GAA	p.G204E	CDH18_uc003jgd.2_Missense_Mutation_p.G204E|CDH18_uc011cnm.1_Missense_Mutation_p.G204E	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	204	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GTAGGGTTGTCCTTGGAGAAT	0.468000													36	60					0	0	0.006999	0	0
CDH9	1007	broad.mit.edu	37	5	26903765	26903765	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:26903765C>T	uc003jgs.1	-	6	1149	c.980G>A	c.(979-981)GGG>GAG	p.G327E	CDH9_uc010iug.2_Missense_Mutation_p.G327E	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	327	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AGTTATAATCCCTTCCTGTGT	0.408000													55	111					0	0	0.014410	0	0
IL7R	3575	broad.mit.edu	37	5	35876106	35876106	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:35876106C>T	uc003jjs.2	+	8	987	c.898C>T	c.(898-900)CCT>TCT	p.P300S	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	300	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			GAGTTTCAATCCTGAAAGTTT	0.418000													10	38					0	0	0.008291	0	0
SLC1A3	6507	broad.mit.edu	37	5	36629592	36629592	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:36629592C>T	uc003jkj.3	+	3	698	c.222C>T	c.(220-222)AGC>AGT	p.S74S	SLC1A3_uc011cox.1_Intron|SLC1A3_uc010iuy.2_Silent_p.S74S	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	74					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	ACAGAATGAGCTACCGGGAAG	0.383000													13	51					0	0	0.020292	0	0
NIPBL	25836	broad.mit.edu	37	5	37007540	37007540	+	Silent	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:37007540A>T	uc003jkl.3	+	18	4702	c.4203A>T	c.(4201-4203)CTA>CTT	p.L1401L	NIPBL_uc003jkk.3_Silent_p.L1401L	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1401					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			CAGAATTGCTAGAGATACAAC	0.313000													5	12					0	0	0.001168	0	0
EGFLAM	133584	broad.mit.edu	37	5	38458457	38458457	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:38458457C>T	uc003jlc.1	+	21	3080	c.2756C>T	c.(2755-2757)TCC>TTC	p.S919F	EGFLAM_uc003jlb.1_Missense_Mutation_p.S911F|EGFLAM_uc003jle.1_Missense_Mutation_p.S677F|EGFLAM_uc003jlf.1_Missense_Mutation_p.S277F|EGFLAM_uc003jlg.1_Missense_Mutation_p.S54F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	919	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GTGAATGGCTCCTTCAACGAT	0.537000													21	60					0	0	0.014323	0	0
OSMR	9180	broad.mit.edu	37	5	38904069	38904069	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:38904069G>A	uc003jln.1	+	8	1444	c.1077G>A	c.(1075-1077)AGG>AGA	p.R359R		NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	359	Fibronectin type-III 1.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ACTCCATAAGGAATAATTTCA	0.313000													3	23					0	0	0.009096	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382030	41382030	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:41382030C>T	uc003jmm.1	-	2	812	c.710G>A	c.(709-711)AGA>AAA	p.R237K		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	237					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TCCCTTCTTTCTTCTCTCAGT	0.517000													13	37					0	0	0.013537	0	0
DMGDH	29958	broad.mit.edu	37	5	78359496	78359496	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:78359496C>T	uc003kfs.2	-	2	222	c.216G>A	c.(214-216)GGG>GGA	p.G72G	DMGDH_uc011ctf.1_Missense_Mutation_p.D28N|DMGDH_uc011ctg.1_5'UTR	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	72					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		CATCTTTCATCCCTGCTTTGG	0.488000													18	76					0	0	0.008871	0	0
CMYA5	202333	broad.mit.edu	37	5	79035102	79035102	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:79035102A>T	uc003kgc.2	+	2	10586	c.10514A>T	c.(10513-10515)AAA>ATA	p.K3505I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3505						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAAGAGCTGAAAAAGTCCCAG	0.428000													4	4					0	0	0.014758	0	0
RASGRF2	5924	broad.mit.edu	37	5	80422926	80422926	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:80422926C>T	uc003kha.1	+	17	2630	c.2630C>T	c.(2629-2631)TCA>TTA	p.S877L	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	877					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TGCTCTGTTTCACCGGCTTCT	0.453000													16	46					0	0	0.012319	0	0
LIX1	167410	broad.mit.edu	37	5	96460208	96460208	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:96460208C>T	uc003kmy.3	-	2	448	c.208G>A	c.(208-210)GTG>ATG	p.V70M		NM_153234	NP_694966	Q8N485	LIX1_HUMAN	limb expression 1	70										ovary(1)	1		all_cancers(142;4.28e-07)|all_epithelial(76;1.06e-09)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0318)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.0733)		GGGAGGGTCACGTAACTCACA	0.468000													13	45					0	0	0.013537	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101583064	101583064	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:101583064C>T	uc003knm.2	-	10	1990	c.1703G>A	c.(1702-1704)GGA>GAA	p.G568E		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	568	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		TTCACATTTTCCAGCTTTAGC	0.328000													28	70					0	0	0.021022	0	0
FEM1C	56929	broad.mit.edu	37	5	114860482	114860483	+	Missense_Mutation	DNP	TA	CT	CT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:114860482_114860483TA>CT	uc003krb.1	-	3	1938_1939	c.1376_1377TA>AG	c.(1375-1377)CTA>CAG	p.L459Q		NM_020177	NP_064562	Q96JP0	FEM1C_HUMAN	feminization 1 homolog a	459						cytoplasm				breast(2)|ovary(1)	3		all_cancers(142;0.000575)|all_epithelial(76;9.98e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;2.5e-07)|Epithelial(69;2.66e-07)|all cancers(49;1.39e-05)		GGTCTTGTTCTAGAGTACAAGG	0.386000													12	63					0	0	0.004672	0	0
SLC22A5	6584	broad.mit.edu	37	5	131719902	131719902	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:131719902G>A	uc003kww.3	+	3	825	c.561G>A	c.(559-561)CAG>CAA	p.Q187Q	SLC22A5_uc003kwx.3_Silent_p.Q211Q|SLC22A5_uc010jdr.1_5'Flank	NM_003060	NP_003051	O76082	S22A5_HUMAN	solute carrier family 22 member 5	187	Helical; Name=3; (Potential).				positive regulation of intestinal epithelial structure maintenance|quorum sensing involved in interaction with host|sodium ion transport|sodium-dependent organic cation transport	apical plasma membrane|brush border membrane|integral to membrane	ATP binding|carnitine transporter activity|PDZ domain binding|symporter activity				0		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	GCTTCCTGCAGATCTTCTCGA	0.498000													49	102					0	0	0.014410	0	0
TXNDC15	79770	broad.mit.edu	37	5	134229287	134229287	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:134229287C>T	uc003lac.1	+	3	1355	c.697C>T	c.(697-699)CTG>TTG	p.L233L	TXNDC15_uc010jdy.1_RNA|TXNDC15_uc011cxv.1_RNA	NM_024715	NP_078991	Q96J42	TXD15_HUMAN	disulfide isomerase precursor	233	Extracellular (Potential).|Thioredoxin.				cell redox homeostasis	integral to membrane				ovary(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTTTAACTCTCTGCCCCGGGC	0.512000													25	110					0	0	0.018920	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202520	140202520	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:140202520C>T	uc003lhl.2	+	1	1160	c.1160C>T	c.(1159-1161)TCC>TTC	p.S387F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S387F|PCDHA5_uc003lhj.1_Missense_Mutation_p.S387F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	387	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACCTGCTCCCTAATGCCC	0.577000													51	76					0	0	0.014410	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140746180	140746180	+	Silent	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:140746180G>T	uc003lju.1	+	1	2283	c.2283G>T	c.(2281-2283)GCG>GCT	p.A761A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.A761A	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	761	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTCACCGCGGACTCGAGGA	0.592000													63	97					5.32961e-40	5.67461e-40	0.014410	1	0
PCDHGB6	56100	broad.mit.edu	37	5	140788198	140788198	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:140788198C>T	uc003lkj.1	+	1	429	c.429C>T	c.(427-429)TTC>TTT	p.F143F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.F143F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	143	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGAAATTTTCGAATCTGCAT	0.348000													25	24					0	0	0.021523	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246154	145246154	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:145246154C>T	uc003lns.1	-	2	474	c.474G>A	c.(472-474)ATG>ATA	p.M158I		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	158											0						CTTCTTTGTTCATCAGAGACT	0.468000													31	48					0	0	0.021022	0	0
PPARGC1B	133522	broad.mit.edu	37	5	149216011	149216011	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:149216011C>T	uc003lrc.2	+	8	2035	c.1993C>T	c.(1993-1995)CTG>TTG	p.L665L	PPARGC1B_uc003lrb.1_Silent_p.L665L|PPARGC1B_uc003lrd.2_Silent_p.L626L|PPARGC1B_uc003lrf.2_Silent_p.L644L|PPARGC1B_uc003lre.1_Silent_p.L644L	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	665					estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AAGTGAGCTCCTGTCCCACCT	0.627000													10	49					0	0	0.006214	0	0
CAMK2A	815	broad.mit.edu	37	5	149652701	149652701	+	Silent	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:149652701T>C	uc003lru.2	-	2	299	c.84A>G	c.(82-84)CGA>CGG	p.R28R	CAMK2A_uc003lrt.2_Silent_p.R28R|CAMK2A_uc010jhe.2_Silent_p.R28R	NM_171825	NP_741960	Q9UQM7	KCC2A_HUMAN	calcium/calmodulin-dependent protein kinase II	28	Protein kinase.				interferon-gamma-mediated signaling pathway|positive regulation of NF-kappaB transcription factor activity|synaptic transmission	cell junction|cytosol|endocytic vesicle membrane|nucleoplasm|presynaptic membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCACACACCTTCGCACCACCG	0.562000													10	73					0	0	0.008291	0	0
ODZ2	57451	broad.mit.edu	37	5	167489158	167489158	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:167489158G>A	uc010jjd.2	+	7	1403	c.1403G>A	c.(1402-1404)AGG>AAG	p.R468K	ODZ2_uc003lzq.2_Missense_Mutation_p.R347K|ODZ2_uc003lzr.3_Missense_Mutation_p.R236K	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTGTTTTGGAGGTCACAAATT	0.488000													7	44					0	0	0.003080	0	0
TMED9	54732	broad.mit.edu	37	5	177022373	177022373	+	Missense_Mutation	SNP	A	G	G	rs11545862		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:177022373A>G	uc003mhx.2	+	5	667	c.664A>G	c.(664-666)ATG>GTG	p.M222V	TMED9_uc010jko.2_RNA	NM_017510	NP_059980	Q9BVK6	TMED9_HUMAN	transmembrane emp24 protein transport domain	222	Helical; (Potential).				transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|integral to membrane					0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGTCTGGCAGATGCGGCACCT	0.602000													18	67					0	0	0.016522	0	0
GRM6	2916	broad.mit.edu	37	5	178410195	178410195	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:178410195C>T	uc003mjr.2	-	9	2331	c.2152G>A	c.(2152-2154)GCC>ACC	p.A718T	GRM6_uc003mjq.2_Missense_Mutation_p.A121T	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	718	Helical; Name=4; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGGGGCCGGGCCCCCAGCCAT	0.612000													6	47					0	0	0.004482	0	0
SQSTM1	8878	broad.mit.edu	37	5	179263543	179263543	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:179263543G>A	uc003mkw.3	+	8	1368	c.1273G>A	c.(1273-1275)GGA>AGA	p.G425R	SQSTM1_uc011dgr.1_Missense_Mutation_p.G341R|SQSTM1_uc011dgs.1_Missense_Mutation_p.G341R|SQSTM1_uc003mkv.3_Silent_p.S341S|SQSTM1_uc003mkx.2_Missense_Mutation_p.G341R	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	425	Interaction with NTRK1 (By similarity).|UBA.		G -> R (in PDB; loss of polyubiquitin- binding).		anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTATGACATCGGAGCGGCTCT	0.577000									Paget_Disease_of_Bone				21	112					0	0	0.014323	0	0
TRIM7	81786	broad.mit.edu	37	5	180625700	180625700	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:180625700C>T	uc003mmz.1	-	5	1045	c.978G>A	c.(976-978)AAG>AAA	p.K326K	TRIM7_uc003mmv.1_Silent_p.K144K|TRIM7_uc003mmw.1_Silent_p.K118K|TRIM7_uc003mmx.1_Silent_p.K118K|TRIM7_uc003mmy.1_Silent_p.K118K	NM_203293	NP_976038	Q9C029	TRIM7_HUMAN	tripartite motif-containing 7 isoform 1	326	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;6.03e-06)|all_epithelial(37;7.1e-07)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0684)	all_cancers(40;0.000172)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;2e-06)|Epithelial(171;1.35e-05)|OV - Ovarian serous cystadenocarcinoma(192;0.000128)|Kidney(146;0.0674)|GBM - Glioblastoma multiforme(465;0.0802)		CTTTGAACTTCTTCAGCATCC	0.537000													9	21					0	0	0.004482	0	0
BMP6	654	broad.mit.edu	37	6	7845444	7845444	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:7845444C>T	uc003mxu.3	+	2	914	c.736C>T	c.(736-738)CCT>TCT	p.P246S		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	246					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					ATCCCAGATTCCTGAGGGTGA	0.433000													24	76					0	0	0.013726	0	0
TNXB	7148	broad.mit.edu	37	6	32017243	32017243	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:32017243G>A	uc003nzl.2	-	28	9757	c.9555C>T	c.(9553-9555)ACC>ACT	p.T3185T	TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3232	Fibronectin type-III 24.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTGGGGGACGGTCCAGGAGA	0.682000													8	66					0	0	0.013537	0	0
COL11A2	1302	broad.mit.edu	37	6	33148928	33148928	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:33148928C>T	uc003ocx.1	-	9	1367	c.1139G>A	c.(1138-1140)GGG>GAG	p.G380E	COL11A2_uc003ocy.1_Missense_Mutation_p.G294E|COL11A2_uc003ocz.1_Missense_Mutation_p.G273E	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	380	Nonhelical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TCCCTTCAGCCCTCGGGGTCC	0.577000													12	71					0	0	0.006122	0	0
ITPR3	3710	broad.mit.edu	37	6	33660659	33660659	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:33660659G>A	uc011drk.1	+	55	7832	c.7613G>A	c.(7612-7614)TGC>TAC	p.C2538Y	ITPR3_uc003oey.2_Missense_Mutation_p.C625Y	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	2538	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						AAGACGACATGCTTCATCTGT	0.547000													10	18					0	0	0.008291	0	0
SCUBE3	222663	broad.mit.edu	37	6	35211401	35211401	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:35211401G>A	uc003okf.1	+	16	1946	c.1940G>A	c.(1939-1941)GGC>GAC	p.G647D	SCUBE3_uc003okg.1_Missense_Mutation_p.G646D|SCUBE3_uc003okh.1_Missense_Mutation_p.G534D	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	647					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						TATTACCACGGCCAGACGGAG	0.667000													10	15					0	0	0.006214	0	0
DNAH8	1769	broad.mit.edu	37	6	38747801	38747801	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:38747801T>A	uc003ooe.1	+	13	2048	c.1448T>A	c.(1447-1449)ATT>AAT	p.I483N		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ATAGAGCGTATTCTTCAGTAC	0.328000													20	25					0	0	0.007291	0	0
DNAH8	1769	broad.mit.edu	37	6	38840746	38840746	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:38840746C>T	uc003ooe.1	+	49	7251	c.6651C>T	c.(6649-6651)TCC>TCT	p.S2217S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						ACTTAAATTCCGTTTTGGATG	0.378000													18	25					0	0	0.012319	0	0
DNAH8	1769	broad.mit.edu	37	6	38950147	38950147	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:38950147G>A	uc003ooe.1	+	84	12809	c.12209G>A	c.(12208-12210)GGA>GAA	p.G4070E	DNAH8_uc003oog.1_Missense_Mutation_p.G519E	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGCCCCTTAGGATGGAATATT	0.348000													17	108					0	0	0.012319	0	0
TTBK1	84630	broad.mit.edu	37	6	43225617	43225617	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:43225617G>T	uc003ouq.1	+	10	1208	c.929G>T	c.(928-930)TGG>TTG	p.W310L		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	310						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GCCTTTGACTGGGAGAAGGCA	0.592000													19	102					1.28384e-07	1.33419e-07	0.012319	1	0
FAM83B	222584	broad.mit.edu	37	6	54805838	54805838	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:54805838G>T	uc003pck.2	+	5	2185	c.2069G>T	c.(2068-2070)AGG>ATG	p.R690M		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	690										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ACACTTACCAGGAATCGAGTT	0.383000													7	35					5.18039e-06	5.33703e-06	0.003080	1	0
PRIM2	5558	broad.mit.edu	37	6	57398258	57398258	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:57398258G>A	uc003pdx.2	+	10	1048	c.961G>A	c.(961-963)GAA>AAA	p.E321K		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	321					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTTAACTTTGGAACAGACATT	0.383000													17	112					0	0	0.010504	0	0
BAI3	577	broad.mit.edu	37	6	69758149	69758149	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:69758149G>A	uc003pev.3	+	14	2628	c.2180G>A	c.(2179-2181)GGA>GAA	p.G727E	BAI3_uc010kak.2_Missense_Mutation_p.G727E	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	727	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGACGGAAGGGAATGGTTGAC	0.363000													23	15					0	0	0.016522	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350520	134350520	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:134350520G>A	uc003qem.1	-	2	614	c.443C>T	c.(442-444)TCC>TTC	p.S148F		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	148	Helical; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		AGTGGCAATGGAAGAGAGGGA	0.478000													17	29					0	0	0.006122	0	0
SLC22A2	6582	broad.mit.edu	37	6	160671634	160671634	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:160671634G>A	uc003qtf.2	-	3	789	c.619C>T	c.(619-621)CGC>TGC	p.R207C	SLC22A2_uc003qte.1_Missense_Mutation_p.R207C|SLC22A2_uc003qth.1_Missense_Mutation_p.R207C	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	207	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		TGGATTAAGCGAAAAATTAAC	0.463000													31	49					0	0	0.006230	0	0
LPAL2	80350	broad.mit.edu	37	6	160905108	160905108	+	RNA	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr6:160905108G>A	uc003qtj.2	-	6		c.1020C>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		GGTTTGGAAGGATCCTCTAGG	0.512000													15	48					0	0	0.008871	0	0
KIAA0415	9907	broad.mit.edu	37	7	4820877	4820877	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:4820877G>A	uc003sne.2	+	2	196	c.113G>A	c.(112-114)GGG>GAG	p.G38E	KIAA0415_uc010ksp.2_RNA	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	38					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		GAGGACTTGGGGCCGGACACC	0.592000													3	55					0	0	0.009096	0	0
HOXA3	3200	broad.mit.edu	37	7	27150120	27150120	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:27150120C>T	uc011jzl.1	-	2	340	c.140G>A	c.(139-141)CGA>CAA	p.R47Q	HOXA3_uc011jzk.1_Intron|HOXA3_uc003syk.2_Missense_Mutation_p.R47Q	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	47					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						GCAGGCGGGTCGGTGGTACTC	0.692000													3	7					0	0	0.009096	0	0
AOAH	313	broad.mit.edu	37	7	36561714	36561714	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:36561714C>T	uc003tfh.3	-	20	1931	c.1530G>A	c.(1528-1530)CAG>CAA	p.Q510Q	AOAH_uc010kxf.2_Silent_p.Q510Q|AOAH_uc011kba.1_Silent_p.Q478Q	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	510					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						TCTGCCACTCCTGTATGACTG	0.572000													9	43					0	0	0.013537	0	0
ELMO1	9844	broad.mit.edu	37	7	37298863	37298863	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:37298863C>T	uc003tfk.1	-	6	643	c.336G>A	c.(334-336)CGG>CGA	p.R112R	ELMO1_uc011kbc.1_Silent_p.R16R|ELMO1_uc010kxg.1_Silent_p.R112R	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	112					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						ACGTGACATCCCGGGAGAGGC	0.542000													29	29					0	0	0.017118	0	0
EPDR1	54749	broad.mit.edu	37	7	37988585	37988586	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:37988585_37988586CC>TT	uc003tfp.2	+	2	792_793	c.773_774CC>TT	c.(772-774)TCC>TTT	p.S258F	EPDR1_uc003tfq.2_Intron|EPDR1_uc010kxh.2_Missense_Mutation_p.S77F	NM_017549	NP_060019	Q9UM22	EPDR1_HUMAN	ependymin related protein 1 precursor	138					cell-matrix adhesion	extracellular region	calcium ion binding			upper_aerodigestive_tract(1)	1						GACCAGTACTCCATCGGGGGGC	0.510000													18	58					0	0	0.004672	0	0
DDC	1644	broad.mit.edu	37	7	50597007	50597007	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:50597007G>A	uc003tpf.3	-	5	555	c.469C>T	c.(469-471)CTG>TTG	p.L157L	DDC_uc010kza.2_Intron|DDC_uc003tpg.3_Silent_p.L157L	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	157	2.|2 X approximate tandem repeats.				cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CGAGCGGCCAGCAGGGCCACC	0.547000													13	45					0	0	0.016723	0	0
PCLO	27445	broad.mit.edu	37	7	82582033	82582033	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:82582033C>T	uc003uhx.2	-	5	8525	c.8236G>A	c.(8236-8238)GAT>AAT	p.D2746N	PCLO_uc003uhv.2_Missense_Mutation_p.D2746N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2677					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCAGAAAGATCAATACATTTA	0.348000													24	9					0	0	0.021523	0	0
SAMD9	54809	broad.mit.edu	37	7	92733753	92733753	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:92733753C>T	uc003umf.2	-	3	1914	c.1658G>A	c.(1657-1659)AGA>AAA	p.R553K	SAMD9_uc003umg.2_Missense_Mutation_p.R553K	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	553						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GAGGGGATCTCTTGGGTCATC	0.408000													16	145					0	0	0.006122	0	0
TRRAP	8295	broad.mit.edu	37	7	98524933	98524933	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:98524933C>T	uc003upp.2	+	23	3328	c.3119C>T	c.(3118-3120)CCC>CTC	p.P1040L	TRRAP_uc011kis.1_Missense_Mutation_p.P1040L|TRRAP_uc003upr.2_Missense_Mutation_p.P732L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1040					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AGCGCCCTGCCCTTTGTCGCC	0.612000													7	68					0	0	0.003080	0	0
MUC17	140453	broad.mit.edu	37	7	100676562	100676562	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:100676562C>T	uc003uxp.1	+	3	1918	c.1865C>T	c.(1864-1866)TCA>TTA	p.S622L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	622	Extracellular (Potential).|8.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATGCCAACCTCAACTTACAGT	0.468000													494	231					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100679132	100679132	+	Missense_Mutation	SNP	C	T	T	rs138483731	byFrequency	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:100679132C>T	uc003uxp.1	+	3	4488	c.4435C>T	c.(4435-4437)CCT>TCT	p.P1479S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1479	Extracellular (Potential).|Ser-rich.|22.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTCAACAACTCCTGTTGACTC	0.483000													37	577					0	0	0.009718	0	0
CFTR	1080	broad.mit.edu	37	7	117246731	117246731	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:117246731G>A	uc003vjd.2	+	18	3044	c.2912G>A	c.(2911-2913)GGG>GAG	p.G971E	CFTR_uc011knq.1_Missense_Mutation_p.G377E	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	971	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ATTATAGGTGGGATTCTTAAT	0.299000									Cystic_Fibrosis				107	71					0	0	0.014410	0	0
RNF133	168433	broad.mit.edu	37	7	122338308	122338308	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:122338308C>T	uc003vkj.1	-	1	901	c.665G>A	c.(664-666)AGA>AAA	p.R222K	CADPS2_uc010lkp.2_Intron|CADPS2_uc010lkq.2_Intron	NM_139175	NP_631914	Q8WVZ7	RN133_HUMAN	ring finger protein 133	222						endoplasmic reticulum membrane|integral to membrane	ligase activity|zinc ion binding			skin(1)	1						TCGCTGCCATCTCCGGTTCTG	0.388000													15	127					0	0	0.004007	0	0
NUP205	23165	broad.mit.edu	37	7	135311087	135311087	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:135311087C>G	uc003vsw.2	+	33	4802	c.4771C>G	c.(4771-4773)CGC>GGC	p.R1591G	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1591					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						CTATGACATGCGCCCAGAAAC	0.423000													10	93					0	0	0.010729	0	0
LUC7L2	51631	broad.mit.edu	37	7	139106979	139106979	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:139106979T>G	uc003vux.2	+	10	1446	c.1072T>G	c.(1072-1074)TCA>GCA	p.S358A	LUC7L2_uc011kqs.1_Missense_Mutation_p.S355A|LUC7L2_uc011kqt.1_Missense_Mutation_p.S424A|LUC7L2_uc003vuy.2_Missense_Mutation_p.S357A|LUC7L2_uc003vva.2_Missense_Mutation_p.S305A	NM_016019	NP_057103	Q9Y383	LC7L2_HUMAN	LUC7-like 2	358	Arg/Ser-rich.						enzyme binding|metal ion binding				0	Melanoma(164;0.242)					AAGAGACAGATCACCTCGTGA	0.443000													16	94					0	0	0.004007	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				86	40					0	0	0.014410	0	0
TRPV5	56302	broad.mit.edu	37	7	142609657	142609657	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:142609657C>T	uc003wby.1	-	13	2043	c.1779G>A	c.(1777-1779)TGG>TGA	p.W593*		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	593	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCTGGGCCCTCCAGAGCTCAT	0.498000													13	118					0	0	0.003163	0	0
OR2A2	442361	broad.mit.edu	37	7	143807476	143807476	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:143807476G>A	uc011ktz.1	+	1	801	c.801G>A	c.(799-801)GAG>GAA	p.E267E		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	267	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					ATCAACGAGAGGAGCAGGAGA	0.512000													125	111					0	0	0.014410	0	0
REPIN1	29803	broad.mit.edu	37	7	150069948	150069948	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:150069948G>T	uc010lpq.1	+	4	2107	c.1618G>T	c.(1618-1620)GAC>TAC	p.D540Y	REPIN1_uc003whd.2_Missense_Mutation_p.D529Y|REPIN1_uc010lpr.1_Missense_Mutation_p.D597Y|REPIN1_uc003whc.2_Missense_Mutation_p.D540Y|REPIN1_uc003whe.2_Missense_Mutation_p.D540Y	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	540					DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			CCACATCCGGGACGGCGCCTT	0.657000													8	61					0.000274275	0.000281353	0.004482	1	0
GIMAP8	155038	broad.mit.edu	37	7	150174550	150174550	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:150174550G>A	uc003whj.2	+	5	2010	c.1680G>A	c.(1678-1680)GCG>GCA	p.A560A		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	560						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CGAAATACGCGATTATGCTGT	0.473000													16	174					0	0	0.007413	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327212	150327212	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:150327212C>T	uc003whn.2	-	2	443	c.19G>A	c.(19-21)GAA>AAA	p.E7K	GIMAP6_uc003whm.2_Missense_Mutation_p.M1I	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	7							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGAATTTGTTCATATTCTTCT	0.428000													9	191					0	0	0.004482	0	0
CHPF2	54480	broad.mit.edu	37	7	150935419	150935419	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:150935419G>A	uc003wjr.1	+	4	3484	c.1971G>A	c.(1969-1971)GGG>GGA	p.G657G	CHPF2_uc003wjq.1_Silent_p.G649G|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	657	Gly/Pro-rich.|Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						CCTCCCGGGGGGCTCCTATAG	0.687000													3	41					0	0	0.004672	0	0
MNX1	3110	broad.mit.edu	37	7	156798384	156798384	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr7:156798384G>A	uc003wnd.1	-	3	1339	c.1036C>T	c.(1036-1038)CGC>TGC	p.R346C	MNX1_uc003wmz.2_Intron|MNX1_uc003wna.2_Intron|MNX1_uc010lqq.1_Missense_Mutation_p.R139C|MNX1_uc003wnc.1_Missense_Mutation_p.R134C|MNX1_uc010lqr.1_RNA	NM_005515	NP_005506	P50219	MNX1_HUMAN	motor neuron and pancreas homeobox 1 isoform 1	346				RRLR -> PPA (in Ref. 1; AAB60647).	humoral immune response|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CGCAGGCGGCGTCCGCTGCCC	0.637000									Currarino_syndrome				6	38					0	0	0.004482	0	0
RP1L1	94137	broad.mit.edu	37	8	10474018	10474018	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:10474018A>C	uc003wtc.2	-	3	918	c.689T>G	c.(688-690)ATG>AGG	p.M230R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	230					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGCATTTTTCATGGCTGGGGT	0.572000													8	78					0	0	0.010729	0	0
ZNF705D	728957	broad.mit.edu	37	8	11970602	11970602	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:11970602G>A	uc003wva.2	+	7	1260	c.838G>A	c.(838-840)GGA>AGA	p.G280R	FAM66D_uc011kxp.1_5'Flank|FAM66D_uc011kxo.1_5'Flank	NM_001039615	NP_001034704	P0CH99	Z705D_HUMAN	zinc finger protein 705D	280					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATTCACATTGGAGAGAAACC	0.423000													40	121					0	0	0.014410	0	0
C8orf79	57604	broad.mit.edu	37	8	12870199	12870199	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:12870199G>A	uc010lsq.2	+	4	653	c.161G>A	c.(160-162)GGG>GAG	p.G54E	C8orf79_uc011kxw.1_Missense_Mutation_p.G54E|C8orf79_uc003wwj.3_5'UTR|C8orf79_uc010lsr.2_5'UTR	NM_020844	NP_065895	Q9P272	K1456_HUMAN	hypothetical protein LOC57604 isoform 1	54							methyltransferase activity				0						ATAGGTTGTGGGACTGGAAAA	0.403000													16	99					0	0	0.006122	0	0
PIWIL2	55124	broad.mit.edu	37	8	22139008	22139008	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:22139008G>T	uc003xbn.2	+	4	553	c.405G>T	c.(403-405)GAG>GAT	p.E135D	PIWIL2_uc011kzf.1_Missense_Mutation_p.E135D|PIWIL2_uc010ltv.2_Missense_Mutation_p.E135D	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	135					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AGATGGCAGAGACCTCCGTTG	0.483000													42	42					2.2871e-25	2.41895e-25	0.007835	1	0
RHOBTB2	23221	broad.mit.edu	37	8	22864244	22864244	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:22864244C>T	uc003xcq.2	+	5	1023	c.486C>T	c.(484-486)CCC>CCT	p.P162P	RHOBTB2_uc003xcp.2_Silent_p.P184P|RHOBTB2_uc011kzp.1_Silent_p.P169P|uc003xcr.2_RNA	NM_015178	NP_055993	Q9BYZ6	RHBT2_HUMAN	Rho-related BTB domain containing 2 isoform 3	162	Rho-like.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			ovary(1)|lung(1)	2		Prostate(55;0.0513)|Breast(100;0.214)		Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CTACCAGGCCCATCAAACCTA	0.587000													66	32					0	0	0.014410	0	0
ASPH	444	broad.mit.edu	37	8	62416020	62416020	+	Silent	SNP	G	A	A	rs112982646		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:62416020G>A	uc003xuj.2	-	25	2444	c.2175C>T	c.(2173-2175)CAC>CAT	p.H725H	ASPH_uc011leg.1_Silent_p.H696H	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	725	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	GCCATACCTCGTGCTCAAAGG	0.498000													4	48					0	0	0.014758	0	0
ANKRD46	157567	broad.mit.edu	37	8	101541941	101541941	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:101541941G>A	uc003yjm.2	-	3	325	c.121C>T	c.(121-123)CGT>TGT	p.R41C	ANKRD46_uc003yjn.1_Missense_Mutation_p.R41C|ANKRD46_uc003yjo.1_Missense_Mutation_p.R41C|ANKRD46_uc003yjp.1_Missense_Mutation_p.R41C	NM_198401	NP_940683	Q86W74	ANR46_HUMAN	ankyrin repeat domain 46	41						integral to membrane					0	all_cancers(14;5.07e-05)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000353)|all_lung(17;0.000998)		Epithelial(11;2.61e-11)|all cancers(13;5.03e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.49e-06)|STAD - Stomach adenocarcinoma(118;0.0957)			CTGCTGTCACGAATATTTGGG	0.493000													70	33					0	0	0.014410	0	0
CSMD3	114788	broad.mit.edu	37	8	113267593	113267593	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:113267593T>C	uc003ynu.2	-	62	10085	c.9926A>G	c.(9925-9927)TAC>TGC	p.Y3309C	CSMD3_uc003yns.2_Missense_Mutation_p.Y2511C|CSMD3_uc003ynt.2_Missense_Mutation_p.Y3269C|CSMD3_uc011lhx.1_Missense_Mutation_p.Y3140C	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3309	Extracellular (Potential).|Sushi 26.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTCTGACTGGTATATAAAGCT	0.403000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	46					0	0	0.016723	0	0
COL14A1	7373	broad.mit.edu	37	8	121222048	121222048	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:121222048A>G	uc003yox.2	+	12	1640	c.1375A>G	c.(1375-1377)ATG>GTG	p.M459V	COL14A1_uc003yoy.2_Missense_Mutation_p.M137V|COL14A1_uc010mde.1_Missense_Mutation_p.M137V	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	459	Fibronectin type-III 3.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TGAGAACAGCATGCGAGTCAA	0.473000													117	39					0	0	0.014410	0	0
FER1L6	654463	broad.mit.edu	37	8	125058134	125058134	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr8:125058134G>A	uc003yqw.2	+	21	2922	c.2716G>A	c.(2716-2718)GAC>AAC	p.D906N		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	906	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GTATGACAGCGACGCTGTGGT	0.502000													183	59					0	0	0.014410	0	0
MLLT3	4300	broad.mit.edu	37	9	20414298	20414298	+	Silent	SNP	A	G	G	rs143254940	byFrequency	TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:20414298A>G	uc003zoe.2	-	5	805	c.546T>C	c.(544-546)AGT>AGC	p.S182S	MLLT3_uc011lne.1_Silent_p.S150S|MLLT3_uc011lnf.1_Silent_p.S179S|MLLT3_uc003zof.2_5'UTR	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	182	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.134000			T	MLL	ALL								6	39					0	0	0.003080	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704974	23704974	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:23704974C>T	uc003zpu.2	-	4	704	c.429G>A	c.(427-429)CAG>CAA	p.Q143Q	ELAVL2_uc003zps.2_Silent_p.Q143Q|ELAVL2_uc003zpt.2_Silent_p.Q143Q|ELAVL2_uc003zpv.2_Silent_p.Q143Q|ELAVL2_uc003zpw.2_Silent_p.Q143Q	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	143	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		GTGAAAAAAGCTGTTCCAACT	0.448000													40	41					0	0	0.010771	0	0
TEK	7010	broad.mit.edu	37	9	27169478	27169478	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:27169478C>T	uc003zqi.3	+	4	921	c.479C>T	c.(478-480)TCC>TTC	p.S160F	TEK_uc010mjc.1_Intron|TEK_uc011lnn.1_Missense_Mutation_p.S160F|TEK_uc011lno.1_Missense_Mutation_p.S160F|TEK_uc011lnp.1_Missense_Mutation_p.S56F|TEK_uc003zqj.1_Missense_Mutation_p.S137F	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	160	Extracellular (Potential).				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		TTACTAGGTTCCTTCATCCAT	0.493000													117	64					0	0	0.014410	0	0
NFX1	4799	broad.mit.edu	37	9	33354888	33354888	+	Silent	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:33354888A>G	uc003zsq.2	+	19	2932	c.2871A>G	c.(2869-2871)AAA>AAG	p.K957K	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsp.1_Silent_p.K957K|NFX1_uc010mjr.1_Silent_p.K958K|NFX1_uc003zsr.2_Silent_p.K958K	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	957					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		TGGAAaggaaaaagtaagtag	0.313000													18	17					0	0	0.014323	0	0
DNAI1	27019	broad.mit.edu	37	9	34491552	34491552	+	Silent	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:34491552G>A	uc003zum.2	+	8	874	c.681G>A	c.(679-681)CAG>CAA	p.Q227Q		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	227					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		CAGCCAATCAGGTAAGACCCT	0.522000									Kartagener_syndrome				30	27					0	0	0.017118	0	0
TLN1	7094	broad.mit.edu	37	9	35703630	35703630	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:35703630G>A	uc003zxt.2	-	48	6755	c.6401C>T	c.(6400-6402)GCC>GTC	p.A2134V		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2134					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ATCTTCCACGGCTTTTACTGT	0.512000													11	83					0	0	0.016723	0	0
Unknown	0	broad.mit.edu	37	9	66513819	66513819	+	RNA	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:66513819C>T	uc010mnh.1	-	6		c.929G>A								Homo sapiens cDNA FLJ20444 fis, clone KAT05128.																		GGTATTCAAACAGCTCTTCTA	0.498000													6	57					0	0	0.008291	0	0
NINJ1	4814	broad.mit.edu	37	9	95888815	95888815	+	Missense_Mutation	SNP	C	T	T	rs144669023		TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:95888815C>T	uc004atg.3	-	2	252	c.181G>A	c.(181-183)GCG>ACG	p.A61T	NINJ1_uc004ath.3_Missense_Mutation_p.A11T	NM_004148	NP_004139	Q92982	NINJ1_HUMAN	ninjurin 1	61	Extracellular (Potential).				cell adhesion|nervous system development|tissue regeneration	integral to membrane				kidney(1)	1						AGCTGGGACGCGTTGGCCATC	0.637000													9	58					0	0	0.006214	0	0
C9orf3	84909	broad.mit.edu	37	9	97535328	97535328	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:97535328T>C	uc004ava.2	+	2	977	c.842T>C	c.(841-843)CTT>CCT	p.L281P	C9orf3_uc011lui.1_RNA|C9orf3_uc004aux.1_Missense_Mutation_p.L281P|C9orf3_uc004auy.2_Missense_Mutation_p.L281P|C9orf3_uc004auz.1_Missense_Mutation_p.L281P	NM_032823	NP_116212	Q8N6M6	AMPO_HUMAN	aminopeptidase O	281					leukotriene biosynthetic process|proteolysis	cytoplasm	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.000275)		AACAGGGCCCTTTTTCCATGC	0.463000													3	97					0	0	0.004672	0	0
COL15A1	1306	broad.mit.edu	37	9	101796832	101796832	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:101796832G>A	uc004azb.1	+	17	2251	c.2045G>A	c.(2044-2046)GGA>GAA	p.G682E		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	682	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TTTTTTCAGGGAGCAAGAGGG	0.343000													9	9					0	0	0.008291	0	0
SVEP1	79987	broad.mit.edu	37	9	113275385	113275385	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:113275385A>G	uc010mtz.2	-	5	1461	c.1124T>C	c.(1123-1125)CTT>CCT	p.L375P	SVEP1_uc010mua.1_Missense_Mutation_p.L375P|SVEP1_uc004beu.2_Missense_Mutation_p.L375P|SVEP1_uc004bev.2_Missense_Mutation_p.L119P	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	375					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCAGTGGACAACTAACATTTA	0.398000													18	9					0	0	0.007413	0	0
DBC1	1620	broad.mit.edu	37	9	121929509	121929509	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:121929509C>T	uc004bkc.2	-	8	2595	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	713					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						GCTGGGGTTTCCCCGGGGCCA	0.552000													40	43					0	0	0.009718	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377769	125377769	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:125377769C>T	uc011lyy.1	+	1	753	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	251	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGCCATATTCTATGGCACCC	0.557000													48	40					0	0	0.014410	0	0
OR1L4	254973	broad.mit.edu	37	9	125486956	125486956	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:125486956C>T	uc004bmu.1	+	1	688	c.688C>T	c.(688-690)CCC>TCC	p.P230S		NM_001005235	NP_001005235	Q8NGR5	OR1L4_HUMAN	olfactory receptor, family 1, subfamily L,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCTCAGAATCCCCTCTGCAGC	0.522000													63	226					0	0	0.014410	0	0
PPP6C	5537	broad.mit.edu	37	9	127920564	127920564	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:127920564C>T	uc004bpg.3	-	4	556	c.335G>A	c.(334-336)GGA>GAA	p.G112E	PPP6C_uc010mwv.2_Missense_Mutation_p.G149E|PPP6C_uc010mww.2_Missense_Mutation_p.G90E|PPP6C_uc011lzr.1_Intron	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	112					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						CTCATGATTTCCTCGCAAAAG	0.358000													28	44					0	0	0.008361	0	0
ABL1	25	broad.mit.edu	37	9	133755522	133755522	+	Silent	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:133755522C>T	uc004bzw.2	+	9	1494	c.1491C>T	c.(1489-1491)TTC>TTT	p.F497F	ABL1_uc004bzv.2_Silent_p.F516F	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	497					actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	AAACAATGTTCCAGGAATCCA	0.537000			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								36	47					0	0	0.006999	0	0
ABO	28	broad.mit.edu	37	9	136131475	136131475	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:136131475C>T	uc004cda.1	-	8	668	c.643G>A	c.(643-645)GAG>AAG	p.E215K	ABO_uc010naf.1_Missense_Mutation_p.E74K|ABO_uc011mcz.1_Missense_Mutation_p.E74K|ABO_uc010nag.1_Missense_Mutation_p.E74K	NM_020469	NP_065202	P16442	BGAT_HUMAN	ABO blood group (alpha	215	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	fucosylgalactoside 3-alpha-galactosyltransferase activity|glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity|metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;5.82e-06)|Epithelial(140;3.45e-05)		TCGCGGAACTCCATGTCCACG	0.642000													4	4					0	0	0.014758	0	0
ABCA2	20	broad.mit.edu	37	9	139907007	139907007	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:139907007G>A	uc011mem.1	-	31	5262	c.5114C>T	c.(5113-5115)TCC>TTC	p.S1705F	ABCA2_uc011mel.1_Missense_Mutation_p.S1706F|ABCA2_uc004ckl.1_Missense_Mutation_p.S1636F|ABCA2_uc004ckm.1_Missense_Mutation_p.S1736F|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	1705					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGCTGGGATGGACTTCAGGAC	0.677000													34	32					0	0	0.007835	0	0
ENTPD8	377841	broad.mit.edu	37	9	140331357	140331357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:140331357C>T	uc004cmw.2	-	5	703	c.519G>A	c.(517-519)TGG>TGA	p.W173*	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Nonsense_Mutation_p.W173*|ENTPD8_uc004cmy.2_3'UTR	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	173	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		TGACAGTGATCCAACCAAAGG	0.667000													52	47					0	0	0.014410	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071340	141071340	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr9:141071340G>A	uc004com.2	+	4	1004	c.743G>A	c.(742-744)CGC>CAC	p.R248H	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TTCCAGGGTCGCATGCCCATG	0.542000													4	55					0	0	0.001168	0	0
ZBED1	9189	broad.mit.edu	37	X	2408251	2408252	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:2408251_2408252GG>AT	uc004cqg.2	-	2	710_711	c.509_510CC>AT	c.(508-510)ACC>AAT	p.T170N	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.T170N	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	170						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGATGGCCTTGGTAGAGATGTA	0.639000													24	166					0	0	0.004672	0	0
BEND2	139105	broad.mit.edu	37	X	18220055	18220055	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:18220055G>T	uc004cyj.3	-	6	1067	c.913C>A	c.(913-915)CCA>ACA	p.P305T	BEND2_uc010nfb.2_Intron	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	305										ovary(3)|kidney(1)|central_nervous_system(1)	5						GGTCTTTCTGGCATTTCTGTA	0.219000													19	13					5.35267e-07	5.55048e-07	0.007413	1	0
MAGEB1	4112	broad.mit.edu	37	X	30269299	30269299	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:30269299A>T	uc004dcc.2	+	4	1009	c.689A>T	c.(688-690)TAT>TTT	p.Y230F	MAGEB1_uc004dcd.2_Missense_Mutation_p.Y230F|MAGEB1_uc004dce.2_Missense_Mutation_p.Y230F	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	230	MAGE.										0						TTGGGAGCCTATGATGGAGAG	0.488000													8	8					0	0	0.004482	0	0
WAS	7454	broad.mit.edu	37	X	48542297	48542297	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:48542297C>T	uc004dkm.3	+	1	112	c.55C>T	c.(55-57)CAG>TAG	p.Q19*		NM_000377	NP_000368	P42768	WASP_HUMAN	Wiskott-Aldrich syndrome protein	19					blood coagulation|defense response|epidermis development|immune response|T cell receptor signaling pathway	actin cytoskeleton|cytosol	identical protein binding|small GTPase regulator activity			ovary(1)	1		all_lung(315;1.27e-10)				ACCAGCGGTTCAGCAGAACAT	0.622000			Mis|N|F|S			lymphoma			Wiskott-Aldrich_syndrome				30	27					0	0	0.009535	0	0
TEX11	56159	broad.mit.edu	37	X	69825276	69825276	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:69825276C>T	uc004dyl.2	-	25	2249	c.2087G>A	c.(2086-2088)AGA>AAA	p.R696K	TEX11_uc004dyk.2_Missense_Mutation_p.R371K|TEX11_uc004dym.2_Missense_Mutation_p.R681K	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	696							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TGAAGCTTTTCTCCCTTGCTC	0.398000													20	11					0	0	0.014323	0	0
TSIX	9383	broad.mit.edu	37	X	73045207	73045207	+	RNA	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:73045207C>T	uc004ebn.2	+	1		c.33168C>T			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						ATGCTTGCTCCTTTCTTTGTA	0.254000													9	5					0	0	0.006214	0	0
KLHL4	56062	broad.mit.edu	37	X	86880625	86880625	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:86880625G>T	uc004efb.2	+	6	1335	c.1153G>T	c.(1153-1155)GAA>TAA	p.E385*	KLHL4_uc004efa.2_Nonsense_Mutation_p.E385*	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	385						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GGCAGATCTTGAAACCAGTTC	0.363000													15	7					1.15919e-05	1.19166e-05	0.008871	1	0
TEX13A	56157	broad.mit.edu	37	X	104463824	104463824	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:104463824C>T	uc004ema.2	-	5	1164	c.1052G>A	c.(1051-1053)AGA>AAA	p.R351K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E352K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	351						intracellular	zinc ion binding			ovary(2)	2						ATGGTCTATTCTGTGGGGCCC	0.582000													36	21					0	0	0.005524	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450038	105450038	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:105450038G>A	uc004emf.1	+	4	1262	c.613G>A	c.(613-615)GAA>AAA	p.E205K	MUM1L1_uc004emg.1_Missense_Mutation_p.E205K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	205										ovary(2)|pancreas(1)|skin(1)	4						AGATAATGATGAAAAAGAGAA	0.388000													4	2					0	0	0.009096	0	0
MORC4	79710	broad.mit.edu	37	X	106205311	106205311	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:106205311A>C	uc004emu.3	-	10	1430	c.1187T>G	c.(1186-1188)CTC>CGC	p.L396R	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.L396R|MORC4_uc004emw.3_Missense_Mutation_p.L144R	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	396							ATP binding|zinc ion binding			ovary(1)	1						GTAAGCATTGAGCTTCTGGGC	0.363000													60	33					0	0	0.014410	0	0
TMEM185A	84548	broad.mit.edu	37	X	148690451	148690451	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:148690451T>C	uc011mxq.1	-	4	597	c.286A>G	c.(286-288)ATG>GTG	p.M96V	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|TMEM185A_uc011mxp.1_Missense_Mutation_p.M37V|TMEM185A_uc004fdo.2_Intron|TMEM185A_uc004fdp.3_Missense_Mutation_p.M13V	NM_032508	NP_115897	Q8NFB2	T185A_HUMAN	transmembrane protein 185A	96	Helical; (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					ACTTCAAACATCAACAAGAGC	0.478000													81	38					0	0	0.014410	0	0
CNGA2	1260	broad.mit.edu	37	X	150912026	150912026	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:150912026C>A	uc004fey.1	+	7	1275	c.1051C>A	c.(1051-1053)CTA>ATA	p.L351I		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	351	Helical; Name=H5; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGAGTACCTATTTGTCAT	0.507000													50	23					9.52127e-25	1.00479e-24	0.014410	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900242	151900242	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:151900242C>T	uc010ntp.2	-	3	913	c.559G>A	c.(559-561)GAT>AAT	p.D187N	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.D187N|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	187	MAGE.			D -> A (in Ref. 1; AAA19023).						skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGGCCATCGTAGGAGAGG	0.582000													99	47					0	0	0.014410	0	0
BCL11B	64919	broad.mit.edu	37	14	99641544	99641546	+	In_Frame_Del	DEL	CTC	-	-			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr14:99641544_99641546delCTC	uc001yga.2	-	4	1894_1896	c.1627_1629delGAG	c.(1627-1629)GAGdel	p.E543del	BCL11B_uc001ygb.2_In_Frame_Del_p.E472del	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	543	Glu-rich.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CCAGTAGCAGctcctcctcctcc	0.517			T	TLX3	T-ALL								3	5	---	---	---	---					
ARL6IP1	23204	broad.mit.edu	37	16	18810024	18810024	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr16:18810024delG	uc002dfl.1	-	2	238	c.169delC	c.(169-171)CTGfs	p.L57fs	ARL6IP1_uc010van.1_Frame_Shift_Del_p.L28fs|ARL6IP1_uc010bvz.1_RNA	NM_015161	NP_055976	Q15041	AR6P1_HUMAN	ADP-ribosylation factor-like 6 interacting	57	Helical; (Potential).					integral to membrane	protein binding				0						CTCACTTACAGAAACACCAAA	0.418													18	102	---	---	---	---					
DNAH5	1767	broad.mit.edu	37	5	13830871	13830886	+	Splice_Site	DEL	GCGTGATGTAACATCT	-	-			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:13830871_13830886delGCGTGATGTAACATCT	uc003jfd.2	-	36	5925	c.5883_splice	c.e36-1	p.R1961_splice		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCTTGAGCCAGCGTGATGTAACATCTGCATGGGTAG	0.500									Kartagener_syndrome				9	73	---	---	---	---					
HEATR7B2	133558	broad.mit.edu	37	5	41039555	41039555	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chr5:41039555delA	uc003jmj.3	-	20	2546	c.2056delT	c.(2056-2058)TGTfs	p.C686fs	HEATR7B2_uc003jmi.3_Frame_Shift_Del_p.C241fs	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	686	HEAT 8.						binding			ovary(6)|central_nervous_system(2)	8						CTTACCTTACATCGATTCATG	0.323													2	4	---	---	---	---					
EFHC2	80258	broad.mit.edu	37	X	44023191	44023191	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A3F5-06A-11D-A20D-08	TCGA-DA-A3F5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	14630c19-9ee0-4ab3-9d8b-8c3309d1e7d0	665797b6-021d-4cf4-8be5-138db70b1211	g.chrX:44023191delG	uc004dgb.3	-	15	2215	c.2125delC	c.(2125-2127)CAAfs	p.Q709fs		NM_025184	NP_079460	Q5JST6	EFHC2_HUMAN	EF-hand domain (C-terminal) containing 2	709							calcium ion binding			breast(3)|ovary(2)|central_nervous_system(1)	6						GATGCTGGTTGCAATTCAGGC	0.303													2	4	---	---	---	---					
