Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KLHL17	339451	broad.mit.edu	37	1	898587	898587	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:898587C>T	uc001aca.1	+	7	1248	c.1141C>T	c.(1141-1143)CGG>TGG	p.R381W	KLHL17_uc001acc.1_RNA|KLHL17_uc010nyb.1_Silent_p.P129P	NM_198317	NP_938073	Q6TDP4	KLH17_HUMAN	kelch-like 17	381	Interaction with F-actin (By similarity).|Kelch 1.				actin cytoskeleton organization	actin cytoskeleton|cell junction|postsynaptic density|postsynaptic membrane	protein complex scaffold				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.52e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.59e-23)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000469)|Kidney(185;0.00227)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCGCCGGGCCCGGGTGGGAGT	0.706000													7	16					0	0	0.00307968	0	0
TAS1R3	83756	broad.mit.edu	37	1	1267914	1267915	+	Missense_Mutation	DNP	CC	TT	TT	rs141843729		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:1267914_1267915CC>TT	uc010nyk.1	+	3	1003_1004	c.1003_1004CC>TT	c.(1003-1005)CCC>TTC	p.P335F		NM_152228	NP_689414	Q7RTX0	TS1R3_HUMAN	taste receptor, type 1, member 3 precursor	335	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste|sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.88e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.146)	Aspartame(DB00168)	GCACGAGTTCCCCCAGTACGTG	0.693000													11	13					0	0	6.4e-05	0	0
NPHP4	261734	broad.mit.edu	37	1	5937187	5937187	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:5937187C>T	uc001alq.1	-	20	3049	c.2783G>A	c.(2782-2784)GGG>GAG	p.G928E	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	928					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CAAGTCTCCCCCGGCCTCCTG	0.662000													3	13					0	0	0.000602214	0	0
KCNAB2	8514	broad.mit.edu	37	1	6142263	6142263	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:6142263G>C	uc009vlv.1	+	6	345	c.210G>C	c.(208-210)GAG>GAC	p.E70D	KCNAB2_uc001alv.1_Missense_Mutation_p.E70D|KCNAB2_uc001alw.1_Missense_Mutation_p.E56D|KCNAB2_uc001alx.1_Missense_Mutation_p.E70D|KCNAB2_uc001aly.1_Missense_Mutation_p.E103D|KCNAB2_uc009vlw.1_Missense_Mutation_p.E3D|KCNAB2_uc001alu.2_Missense_Mutation_p.E70D	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	70						cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		AGATGGCAGAGCAGCTCATGA	0.582000													19	82					0	0	0.00152264	0	0
PLEKHG5	57449	broad.mit.edu	37	1	6528347	6528347	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:6528347G>A	uc001ano.1	-	21	2818	c.2717C>T	c.(2716-2718)CCT>CTT	p.P906L	PLEKHG5_uc001ann.1_Missense_Mutation_p.P887L|PLEKHG5_uc001anq.1_Intron|PLEKHG5_uc001anp.1_Missense_Mutation_p.P927L|TNFRSF25_uc001ana.2_5'Flank|TNFRSF25_uc001anb.2_5'Flank|TNFRSF25_uc001anc.2_5'Flank|TNFRSF25_uc001and.2_5'Flank|TNFRSF25_uc009vlz.2_5'Flank|TNFRSF25_uc001ane.2_5'Flank|TNFRSF25_uc001anf.2_5'Flank|TNFRSF25_uc001ang.2_5'Flank|TNFRSF25_uc001anh.2_5'Flank|TNFRSF25_uc001ani.1_5'Flank|PLEKHG5_uc001anj.1_Missense_Mutation_p.P411L|PLEKHG5_uc009vma.1_Missense_Mutation_p.P690L|PLEKHG5_uc010nzr.1_Missense_Mutation_p.P919L|PLEKHG5_uc001ank.1_Missense_Mutation_p.P850L|PLEKHG5_uc009vmb.1_Missense_Mutation_p.P850L|PLEKHG5_uc001anl.1_Missense_Mutation_p.P850L|PLEKHG5_uc001anm.1_Missense_Mutation_p.P850L|PLEKHG5_uc001anr.1_Missense_Mutation_p.P113L	NM_001042663	NP_001036128	O94827	PKHG5_HUMAN	pleckstrin homology domain containing family G	906					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			liver(1)	1	Ovarian(185;0.02)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;5.51e-35)|GBM - Glioblastoma multiforme(13;3.57e-27)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00159)|READ - Rectum adenocarcinoma(331;0.0419)		TGGAGGGGAAGGAACTCGTGG	0.667000													14	10					0	0	0.00316338	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7998374	7998374	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:7998374C>T	uc001aot.2	-	4	353	c.225G>A	c.(223-225)AGG>AGA	p.R75R		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	75	TNFR-Cys 2.|Extracellular (Potential).				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		AACACTCCTTCCTGGTCCTGA	0.493000													11	48					0	0	0.00185496	0	0
PGD	5226	broad.mit.edu	37	1	10464254	10464254	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:10464254T>G	uc001arc.2	+	5	457	c.367T>G	c.(367-369)TTT>GTT	p.F123V	PGD_uc001ard.2_Nonsense_Mutation_p.Y41*|PGD_uc010oak.1_Missense_Mutation_p.F101V|PGD_uc010oal.1_Missense_Mutation_p.F110V	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	123					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GGGAATTTTATTTGTGGGGAG	0.493000													31	48					0	0	0.00283554	0	0
CASZ1	54897	broad.mit.edu	37	1	10719783	10719783	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:10719783G>A	uc001aro.2	-	6	1636	c.1316C>T	c.(1315-1317)ACC>ATC	p.T439I	CASZ1_uc001arp.1_Missense_Mutation_p.T439I|CASZ1_uc009vmx.2_Missense_Mutation_p.T463I|CASZ1_uc001arq.1_Missense_Mutation_p.T298I	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	439					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGTCCCCGTGGTGATGGAGTC	0.632000													23	44					0	0	0.00278032	0	0
KIAA2013	90231	broad.mit.edu	37	1	11985629	11985629	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:11985629C>T	uc001atk.2	-	1	860	c.666G>A	c.(664-666)GGG>GGA	p.G222G	KIAA2013_uc001atl.1_Silent_p.G222G	NM_138346	NP_612355	Q8IYS2	K2013_HUMAN	hypothetical protein LOC90231 precursor	222	Extracellular (Potential).					integral to membrane				ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00149)|all_lung(284;0.00189)|Breast(348;0.00586)|Colorectal(325;0.0062)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0556)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGGCAGTGGGCCCCACAGTCT	0.672000													12	10					0	0	0.00244969	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12884953	12884953	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:12884953G>A	uc001auk.2	-	4	1354	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	386											0						TGCTCCAGCAGAGAGTACCAT	0.502000													136	100					0	0	0.00361006	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946384	16946384	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:16946384C>T	uc010ocf.1	-	3		c.514G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TCGTCATGCTCCTGCTGCAGG	0.612000													5	18					0	0	0.00198382	0	0
MST1P2	11209	broad.mit.edu	37	1	16975082	16975082	+	RNA	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:16975082A>G	uc010och.1	+	7		c.1542A>G			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCAGACCCAGATGGGGATAGC	0.612000													6	70					0	0	0.000673444	0	0
MST1P2	11209	broad.mit.edu	37	1	16975699	16975699	+	RNA	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:16975699A>C	uc010och.1	+	10		c.1848A>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GGGGGTCTCTAGTGAAGGAGC	0.587000													4	22					0	0	0.000274275	0	0
PADI4	23569	broad.mit.edu	37	1	17682880	17682881	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:17682880_17682881GG>AA	uc001baj.2	+	13	1512_1513	c.1484_1485GG>AA	c.(1483-1485)AGG>AAA	p.R495K		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	495					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GCCAGCCCCAGGTCCTGCTACA	0.609000													9	7					0	0	6.4e-05	0	0
UBR4	23352	broad.mit.edu	37	1	19523652	19523652	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:19523652A>G	uc001bbi.2	-	8	1005	c.1001T>C	c.(1000-1002)CTA>CCA	p.L334P		NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	334					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CAGACAACTTAGGCTGAGGAC	0.408000													10	41					0	0	0.000673444	0	0
PLA2G5	5322	broad.mit.edu	37	1	20412659	20412659	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:20412659G>C	uc001bcy.2	+	3	392	c.124G>C	c.(124-126)GGC>CGC	p.G42R	PLA2G5_uc001bcw.2_RNA|PLA2G5_uc001bcx.2_Missense_Mutation_p.G73R	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor	42					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		GACAAACTACGGCTTCTACGG	0.557000													37	30					0	0	0.00195071	0	0
ASAP3	55616	broad.mit.edu	37	1	23760005	23760005	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:23760005C>T	uc001bha.2	-	21	2164	c.2040G>A	c.(2038-2040)GGG>GGA	p.G680G	ASAP3_uc001bgy.1_Silent_p.G184G|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Silent_p.G549G|ASAP3_uc010oea.1_Silent_p.G671G|ASAP3_uc001bhb.2_Silent_p.G203G	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	680					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						AGGCAAAGGTCCCCGCCTGGG	0.592000													29	93					0	0	0.00209593	0	0
IL22RA1	58985	broad.mit.edu	37	1	24463708	24463708	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:24463708C>T	uc001biq.1	-	3	307	c.268G>A	c.(268-270)GAG>AAG	p.E90K	IL22RA1_uc010oeg.1_5'UTR|IL22RA1_uc009vrb.1_5'UTR|IL22RA1_uc010oeh.1_Missense_Mutation_p.E90K	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	90	Extracellular (Potential).|Fibronectin type-III 1.					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		TAGTAGAGCTCCGTGAGGTTG	0.617000													12	29					0	0	0.00185496	0	0
MAP3K6	9064	broad.mit.edu	37	1	27690531	27690531	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:27690531C>T	uc001bny.1	-	5	990	c.741G>A	c.(739-741)CGG>CGA	p.R247R	MAP3K6_uc009vsw.1_Silent_p.R239R|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	247					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TGAACCGCTCCCGCGCCTGCC	0.652000													16	15					0	0	0.00400662	0	0
RCC1	1104	broad.mit.edu	37	1	28858478	28858478	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:28858478C>T	uc001bqg.1	+	3	322	c.237C>T	c.(235-237)ACC>ACT	p.T79T	SNHG3-RCC1_uc001bqa.1_Silent_p.T79T|SNHG3-RCC1_uc001bqb.1_Silent_p.T79T|SNHG3-RCC1_uc001bqc.1_Silent_p.T79T|RCC1_uc001bqe.1_Silent_p.T96T|RCC1_uc001bqf.1_Silent_p.T110T	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	79	RCC1 1.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		GCATGCACACCGTGTGTCTAA	0.612000													29	28					0	0	0.00375469	0	0
HDAC1	3065	broad.mit.edu	37	1	32796199	32796199	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:32796199G>A	uc001bvb.1	+	8	813	c.750G>A	c.(748-750)GAG>GAA	p.E250E	HDAC1_uc010ohf.1_Silent_p.E221E|HDAC1_uc001bvc.1_Silent_p.E6E	NM_004964	NP_004955	Q13547	HDAC1_HUMAN	histone deacetylase 1	250	Histone deacetylase.				anti-apoptosis|blood coagulation|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|histone H3 deacetylation|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of androgen receptor signaling pathway|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytosol|NuRD complex|Sin3 complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|identical protein binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|RNA polymerase II transcription corepressor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)	3		Breast(348;0.000523)|Lung NSC(340;0.000992)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Lung SC(1967;0.113)		KIRC - Kidney renal clear cell carcinoma(1967;0.138)	Vorinostat(DB02546)	AAGTAATGGAGATGTTCCAGC	0.478000													33	114					0	0	0.00111076	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956987	33956987	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:33956987C>T	uc001bxj.3	+	6	1296	c.1129C>T	c.(1129-1131)CGC>TGC	p.R377C	ZSCAN20_uc001bxk.2_Missense_Mutation_p.R323C|ZSCAN20_uc009vui.2_Missense_Mutation_p.R377C	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	377					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGAGCAATGTCGCTATAGGGT	0.572000													46	55					0	0	0.00361006	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960632	33960633	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:33960632_33960633CC>TT	uc001bxj.3	+	8	2855_2856	c.2688_2689CC>TT	c.(2686-2691)ATCCAT>ATTTAT	p.H897Y	ZSCAN20_uc009vui.2_Missense_Mutation_p.H896Y	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	897	C2H2-type 5.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				ACCAAAGAATCCATACGGGAGA	0.500000													32	78					0	0	6.4e-05	0	0
HMGB4	127540	broad.mit.edu	37	1	34330176	34330176	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:34330176G>A	uc001bxp.2	+	2	2127	c.384G>A	c.(382-384)GGG>GGA	p.G128G	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_Silent_p.G54G	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	128						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AGGCCACAGGGAAGATGTGGT	0.542000													10	43					0	0	0.000673444	0	0
ZMYM4	9202	broad.mit.edu	37	1	35881156	35881156	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:35881156C>T	uc001byt.2	+	28	4230	c.4150C>T	c.(4150-4152)CTT>TTT	p.L1384F	ZMYM4_uc009vuu.2_Missense_Mutation_p.L1352F|ZMYM4_uc001byu.2_Missense_Mutation_p.L1060F|ZMYM4_uc009vuv.2_Missense_Mutation_p.L1123F	NM_005095	NP_005086	Q5VZL5	ZMYM4_HUMAN	zinc finger protein 262	1384					multicellular organismal development		DNA binding|zinc ion binding			large_intestine(2)|ovary(1)|kidney(1)|skin(1)	5		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AAACACCCTCCTTTTCTTCAA	0.448000													14	49					0	0	0.00316338	0	0
MAP7D1	55700	broad.mit.edu	37	1	36643603	36643604	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:36643603_36643604CC>TT	uc001bzz.2	+	9	1725_1726	c.1509_1510CC>TT	c.(1507-1512)TCCCCC>TCTTCC	p.P504S	MAP7D1_uc001caa.2_Missense_Mutation_p.P472S|MAP7D1_uc001cab.2_Missense_Mutation_p.P467S|MAP7D1_uc001cac.2_Missense_Mutation_p.P204S|MAP7D1_uc001cad.2_Missense_Mutation_p.P50S	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	504	Pro-rich.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				CCACTGCATCCCCCAAGGGGCG	0.693000													6	14					0	0	6.4e-05	0	0
THRAP3	9967	broad.mit.edu	37	1	36754862	36754863	+	Nonsense_Mutation	DNP	CC	GT	GT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:36754862_36754863CC>GT	uc001cae.3	+	5	1466_1467	c.1242_1243CC>GT	c.(1240-1245)CTCCGA>CTGTGA	p.R415*	THRAP3_uc001caf.3_Nonsense_Mutation_p.R415*|THRAP3_uc001cag.1_Nonsense_Mutation_p.R415*	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	415					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGTATAAGCTCCGAGATGACTT	0.436000			T	USP6	aneurysmal bone cysts								38	34					0	0	6.4e-05	0	0
SCMH1	22955	broad.mit.edu	37	1	41579008	41579008	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:41579008G>A	uc001cgo.2	-	8	973	c.662C>T	c.(661-663)CCT>CTT	p.P221L	SCMH1_uc010ojr.1_Intron|SCMH1_uc001cgp.2_Missense_Mutation_p.P160L|SCMH1_uc001cgr.2_Missense_Mutation_p.P160L|SCMH1_uc001cgs.2_Missense_Mutation_p.P231L|SCMH1_uc001cgt.2_Missense_Mutation_p.P160L|SCMH1_uc001cgq.2_Missense_Mutation_p.P174L|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	221	MBT 2.				anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				CCAGCCCACAGGGAAGATGTC	0.557000													60	38					0	0	0.00361006	0	0
CYP4B1	1580	broad.mit.edu	37	1	47282822	47282822	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:47282822C>T	uc001cqm.3	+	9	1257	c.1173C>T	c.(1171-1173)GTC>GTT	p.V391V	CYP4B1_uc001cqn.3_Silent_p.V392V|CYP4B1_uc009vym.2_Silent_p.V377V|CYP4B1_uc010omk.1_Silent_p.V228V	NM_000779	NP_000770	P13584	CP4B1_HUMAN	cytochrome P450, family 4, subfamily B,	391					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					GCAAGCCTGTCACCTTTGTGG	0.567000													29	30					0	0	0.00106085	0	0
CYP4A11	1579	broad.mit.edu	37	1	47406984	47406984	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:47406984C>T	uc001cqp.3	-	1	173	c.122G>A	c.(121-123)AGG>AAG	p.R41K	CYP4A11_uc001cqq.2_Missense_Mutation_p.R41K|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	41					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	CAGCCACTGCCTGTGCAGGTA	0.607000													36	35					0	0	0.00327116	0	0
TAL1	6886	broad.mit.edu	37	1	47685531	47685531	+	Missense_Mutation	SNP	G	A	A	rs146355469		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:47685531G>A	uc001cqx.2	-	4	1434	c.857C>T	c.(856-858)TCC>TTC	p.S286F	TAL1_uc009vyq.2_Missense_Mutation_p.P43S|TAL1_uc001cqy.2_Missense_Mutation_p.S286F	NM_003189	NP_003180	P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	286					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			lung(1)	1						GGAGTTGGGGGAAAGCACGTC	0.592000			T	TRD@|SIL	lymphoblastic leukemia/biphasic								7	33					0	0	0.00307968	0	0
SCP2	6342	broad.mit.edu	37	1	53443971	53443971	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:53443971G>A	uc001cur.1	+	9	878	c.757G>A	c.(757-759)GAA>AAA	p.E253K	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.E172K|SCP2_uc010onp.1_Missense_Mutation_p.E229K|SCP2_uc009vzi.1_Missense_Mutation_p.E209K|SCP2_uc001cuq.1_Missense_Mutation_p.E209K	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	253					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						CAAAGCTGTGGAAATTTTGGC	0.368000													18	46					0	0	0.00121646	0	0
TMEM48	55706	broad.mit.edu	37	1	54284741	54284742	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:54284741_54284742GA>AC	uc001cvs.2	-	6	846_847	c.605_606TC>GT	c.(604-606)TTC>TGT	p.F202C	TMEM48_uc010onu.1_Missense_Mutation_p.F162C|TMEM48_uc001cvt.2_Missense_Mutation_p.F79C|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	202	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TAAAACGCAAGAACTTGTATTG	0.332000													11	37					0	0	6.4e-05	0	0
C1orf175	374977	broad.mit.edu	37	1	55167774	55167774	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:55167774C>T	uc010ooe.1	+	20	3621	c.3297C>T	c.(3295-3297)GTC>GTT	p.V1099V	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.V617V|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.V301V	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1099	HEAT 3.			V -> D (in Ref. 2; CAH18687, 1; BAC87334 and 4; AAH29191).		integral to membrane	binding				0						CACGAGAGGTCGTGCGCTCCT	0.612000													5	19					0	0	0.00198382	0	0
PARS2	25973	broad.mit.edu	37	1	55224298	55224298	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:55224298G>A	uc001cxy.2	-	2	620	c.537C>T	c.(535-537)TTC>TTT	p.F179F		NM_152268	NP_689481	Q7L3T8	SYPM_HUMAN	prolyl-tRNA synthetase (mitochondrial)(putative)	179					prolyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|proline-tRNA ligase activity			ovary(2)	2					L-Proline(DB00172)	GGTACAGCAGGAAGGGAAGCT	0.512000													32	67					0	0	0.00283554	0	0
C8B	732	broad.mit.edu	37	1	57417792	57417792	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:57417792C>T	uc001cyp.2	-	5	662	c.595G>A	c.(595-597)GGA>AGA	p.G199R	C8B_uc010oon.1_Missense_Mutation_p.G137R|C8B_uc010ooo.1_Missense_Mutation_p.G147R	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	199	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GGGGAGCATCCACCTGCATAA	0.403000													68	49					0	0	0.00361006	0	0
INADL	10207	broad.mit.edu	37	1	62579761	62579761	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:62579761G>A	uc001dab.2	+	35	4612	c.4498G>A	c.(4498-4500)GAA>AAA	p.E1500K	INADL_uc009waf.1_Missense_Mutation_p.E1530K|INADL_uc001daa.2_Missense_Mutation_p.E1472K|INADL_uc001dad.3_Missense_Mutation_p.E1197K|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.E314K|INADL_uc009wag.2_Missense_Mutation_p.E284K|INADL_uc010oou.1_Missense_Mutation_p.E145K	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1500	PDZ 8.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						CAGCCACGAAGAAGCCATCAC	0.567000													11	12					0	0	0.000978159	0	0
LEPR	3953	broad.mit.edu	37	1	66083769	66083769	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:66083769G>A	uc001dci.2	+	16	2537	c.2335G>A	c.(2335-2337)GAA>AAA	p.E779K	LEPR_uc001dcg.2_Missense_Mutation_p.E779K|LEPR_uc001dch.2_Missense_Mutation_p.E779K|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.E779K|LEPR_uc001dck.2_Missense_Mutation_p.E779K	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	779	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AAATCTTAATGAAGATGGTGA	0.313000													15	83					0	0	0.000566183	0	0
GBP4	115361	broad.mit.edu	37	1	89662941	89662941	+	Silent	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:89662941C>A	uc001dnb.2	-	2	203	c.87G>T	c.(85-87)GTG>GTT	p.V29V		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	29						cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		CCTGGTTTTCCACTAGACAAA	0.438000													17	46					7.07596e-05	0.000230517	0.00074312	1	0
F3	2152	broad.mit.edu	37	1	94997936	94997936	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:94997936T>G	uc001dqr.2	-	5	871	c.692A>C	c.(691-693)AAC>ACC	p.N231T	F3_uc001dqp.2_RNA|F3_uc001dqq.2_Intron|F3_uc001dqs.2_Intron	NM_001993	NP_001984	P13726	TF_HUMAN	coagulation factor III precursor	231	Extracellular (Potential).				activation of caspase activity|activation of plasma proteins involved in acute inflammatory response|anti-apoptosis|blood coagulation, extrinsic pathway|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of protein kinase B signaling cascade	extracellular matrix|extracellular space|integral to membrane	cell surface binding|phospholipid binding|protease binding			central_nervous_system(1)	1		all_lung(203;0.00106)|Lung NSC(277;0.00475)		all cancers(265;0.0232)|Epithelial(280;0.121)	Coagulation factor VIIa(DB00036)	ACTCTTCCGGTTAACTGTTCG	0.478000													18	53					0	0	0.00121646	0	0
COL11A1	1301	broad.mit.edu	37	1	103468307	103468307	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:103468307T>C	uc001dul.2	-	22	2357	c.2039A>G	c.(2038-2040)AAC>AGC	p.N680S	COL11A1_uc001duk.2_5'UTR|COL11A1_uc001dum.2_Missense_Mutation_p.N692S|COL11A1_uc001dun.2_Missense_Mutation_p.N641S|COL11A1_uc009weh.2_Missense_Mutation_p.N564S	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	680	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACATACCATGTTCCCTTTTGG	0.313000													32	43					0	0	0.00283554	0	0
OVGP1	5016	broad.mit.edu	37	1	111957229	111957230	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:111957229_111957230CC>TT	uc001eba.2	-	11	1949_1950	c.1893_1894GG>AA	c.(1891-1896)CCGGAA>CCAAAA	p.E632K	OVGP1_uc001eaz.2_Missense_Mutation_p.E594K|OVGP1_uc010owb.1_Missense_Mutation_p.E280K	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	632					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		GGAGTTTGTTCCGGGAGCTGGA	0.500000													36	31					0	0	6.4e-05	0	0
DENND2C	163259	broad.mit.edu	37	1	115078991	115078991	+	RNA	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:115078991G>A	uc001eez.2	-	29		c.4652C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCTCATCAAGGGCAGCAGCAC	0.532000													9	23					0	0	0.000274275	0	0
GDAP2	54834	broad.mit.edu	37	1	118420659	118420659	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:118420659G>A	uc001ehf.2	-	13	1717	c.1418C>T	c.(1417-1419)CCT>CTT	p.P473L	GDAP2_uc001ehg.2_Missense_Mutation_p.P473L	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	473	CRAL-TRIO.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		GACAAAAGGAGGAAAGTCAAT	0.448000													20	24					0	0	0.00278032	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458966	120458966	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:120458966T>A	uc001eik.2	-	34	6635	c.6379A>T	c.(6379-6381)AAG>TAG	p.K2127*		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2127	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTACTACCCTTGGCATCCTTT	0.512000			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				141	459					0	0	0.00361006	0	0
FLG	2312	broad.mit.edu	37	1	152285396	152285396	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:152285396C>T	uc001ezu.1	-	3	2002	c.1966G>A	c.(1966-1968)GGC>AGC	p.G656S	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	656	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCTGGAGCCATCTCTTGAC	0.547000									Ichthyosis				299	36					0	0	0.00361006	0	0
FLG2	388698	broad.mit.edu	37	1	152328874	152328874	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:152328874G>A	uc001ezw.3	-	3	1461	c.1388C>T	c.(1387-1389)TCC>TTC	p.S463F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	463	Filaggrin 2.|Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATAGCCCAAGGATTGACTTGA	0.507000													179	23					0	0	0.00361006	0	0
CRTC2	200186	broad.mit.edu	37	1	153920746	153920746	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:153920746A>C	uc010ped.1	-	14	1991	c.1921T>G	c.(1921-1923)TTT>GTT	p.F641V	DENND4B_uc001fdd.1_5'Flank|CRTC2_uc001fde.3_RNA|CRTC2_uc001fdf.3_Missense_Mutation_p.F177V	NM_181715	NP_859066	Q53ET0	CRTC2_HUMAN	CREB regulated transcription coactivator 2	641					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)	2	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GACACCTCAAAGCCAGGCACT	0.582000													27	98					0	0	0.00178596	0	0
PEAR1	375033	broad.mit.edu	37	1	156873774	156873774	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:156873774G>A	uc001fqj.1	+	2	172	c.56G>A	c.(55-57)GGA>GAA	p.G19E	PEAR1_uc009wsl.1_5'Flank|PEAR1_uc001fqk.1_5'Flank	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	19						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGGCTGGCTGGAACTCTCAAC	0.637000													55	111					0	0	0.00361006	0	0
ETV3L	440695	broad.mit.edu	37	1	157062654	157062654	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:157062654C>T	uc001fqq.1	-	5	1158	c.873G>A	c.(871-873)GGG>GGA	p.G291G		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	291						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				CCTGTCCCAGCCCTGCCAAGA	0.632000													11	35					0	0	0.00185496	0	0
OR10J3	441911	broad.mit.edu	37	1	159284433	159284433	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:159284433G>A	uc010piu.1	-	1	17	c.17C>T	c.(16-18)TCC>TTC	p.S6F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					CACAAAAGTGGAATTTAGCTT	0.433000													103	227					0	0	0.00361006	0	0
CCDC19	25790	broad.mit.edu	37	1	159863040	159863040	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:159863040C>T	uc001fui.2	-	2	77	c.59G>A	c.(58-60)AGG>AAG	p.R20K	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_5'UTR|CCDC19_uc001ful.2_5'UTR|CCDC19_uc009wtc.1_Missense_Mutation_p.R20K	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	20						mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			AGCCTTATTCCTTGACCTGTT	0.507000													160	26					0	0	0.00361006	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161168006	161168006	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:161168006A>C	uc001fyt.3	-	1	840	c.412T>G	c.(412-414)TCG>GCG	p.S138A	ADAMTS4_uc001fyu.2_Missense_Mutation_p.S138A|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	138					proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GATGCCACCGACTCCGGATCT	0.637000													22	43					0	0	0.00332997	0	0
LRRC52	440699	broad.mit.edu	37	1	165513699	165513699	+	Silent	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:165513699C>A	uc001gde.2	+	1	222	c.166C>A	c.(166-168)CGG>AGG	p.R56R	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	56	LRR 1.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CCTGAACACCCGGAGGCTGTT	0.473000													95	77					3.47606e-37	1.15532e-36	0.00361006	1	0
TBX19	9095	broad.mit.edu	37	1	168260457	168260457	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:168260457C>T	uc001gfl.2	+	2	314	c.263C>T	c.(262-264)TCC>TTC	p.S88F	TBX19_uc001gfj.3_Missense_Mutation_p.S19F	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	88	T-box.				anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCCATGTACTCCCTCCTGCTG	0.552000													58	61					0	0	0.00361006	0	0
C1orf156	92342	broad.mit.edu	37	1	169762117	169762117	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:169762117T>C	uc001ggn.2	-	2	998	c.720A>G	c.(718-720)GAA>GAG	p.E240E	C1orf112_uc001ggj.2_Intron|C1orf112_uc001ggo.2_5'Flank|uc010plt.1_5'Flank|C1orf112_uc001ggp.2_5'Flank|C1orf112_uc001ggq.2_5'Flank|C1orf112_uc009wvt.2_5'Flank	NM_033418	NP_219486	O95568	MET18_HUMAN	hypothetical protein MGC9084	240						cytoplasm	protein methyltransferase activity				0	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CATCATTTTCTTCATCTTCCA	0.358000													50	119					0	0	0.00361006	0	0
FMO1	2326	broad.mit.edu	37	1	171244498	171244498	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:171244498G>T	uc009wvz.2	+	4	471	c.335G>T	c.(334-336)AGT>ATT	p.S112I	FMO1_uc010pme.1_Missense_Mutation_p.S49I|FMO1_uc001ghl.2_Missense_Mutation_p.S112I|FMO1_uc001ghm.2_Missense_Mutation_p.S112I|FMO1_uc001ghn.2_Missense_Mutation_p.S112I	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	112					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAAGTCTGCAGTGTAACAAAA	0.408000													45	43					1.63429e-32	5.41809e-32	0.00361006	1	0
KLHL20	27252	broad.mit.edu	37	1	173703101	173703101	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:173703101C>T	uc001gjc.2	+	3	452	c.273C>T	c.(271-273)CCC>CCT	p.P91P	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_Silent_p.P73P|KLHL20_uc001gjd.2_Silent_p.P91P	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	91	BTB.				cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						CCTGTAGTCCCTACTTCCGAG	0.478000													18	74					0	0	0.000958276	0	0
CEP350	9857	broad.mit.edu	37	1	179991953	179991953	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:179991953C>T	uc001gnt.2	+	13	3739	c.3356C>T	c.(3355-3357)TCG>TTG	p.S1119L	CEP350_uc009wxl.2_Missense_Mutation_p.S1118L|CEP350_uc001gnu.2_Missense_Mutation_p.S953L	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1119	Ser-rich.					centrosome|nucleus|spindle				ovary(4)	4						ACTGGGACTTCGACAGAAAAA	0.403000													14	1					0	0	0.00244969	0	0
CACNA1E	777	broad.mit.edu	37	1	181767596	181767596	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:181767596G>A	uc001gow.2	+	47	6604	c.6439G>A	c.(6439-6441)GAG>AAG	p.E2147K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E2035K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E1416K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2190	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGATGGAAGCGAGGAGGGCTC	0.642000													13	38					0	0	0.00185496	0	0
RNASEL	6041	broad.mit.edu	37	1	182551309	182551309	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:182551309C>T	uc001gpj.1	-	3	1818	c.1651G>A	c.(1651-1653)GTT>ATT	p.V551I	RNASEL_uc009wxz.1_Missense_Mutation_p.V551I|RNASEL_uc001gpk.2_Missense_Mutation_p.V551I|RNASEL_uc009wya.1_3'UTR	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	551	Protein kinase.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						gaaagttgaaccaCCTCTTCA	0.403000									Hereditary_Prostate_Cancer				25	179					0	0	0.00106085	0	0
KCNT2	343450	broad.mit.edu	37	1	196395036	196395036	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:196395036C>T	uc001gtd.1	-	11	1127	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.R356Q|KCNT2_uc001gtf.1_Missense_Mutation_p.R356Q|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.R356Q|KCNT2_uc009wyv.1_Missense_Mutation_p.R331Q	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	356	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GTAGATAACTCGTTGGGACCA	0.413000													22	82					0	0	0.00229938	0	0
ATP6V1G3	127124	broad.mit.edu	37	1	198492686	198492686	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:198492686G>A	uc001gup.2	-	4	298	c.192C>T	c.(190-192)GGC>GGT	p.G64G	ATP6V1G3_uc009wzd.2_Silent_p.G70G|ATP6V1G3_uc001guo.2_3'UTR	NM_133262	NP_573569	Q96LB4	VATG3_HUMAN	ATPase, H+ transporting, lysosomal, V1 subunit	64					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|plasma membrane|vacuolar proton-transporting V-type ATPase complex	ATPase binding			central_nervous_system(1)	1						TATTCTGAGAGCCCATTATCT	0.333000													43	3					0	0	0.00361006	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200801385	200801385	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:200801385G>A	uc001gvl.2	+	6	1006	c.736G>A	c.(736-738)GAA>AAA	p.E246K	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.E235K|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.E235K	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	246	CH.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						TCCATTGGTAGAAAATTTGTT	0.368000													23	37					0	0	0.00278032	0	0
CACNA1S	779	broad.mit.edu	37	1	201046244	201046244	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:201046244G>A	uc001gvv.2	-	12	1858	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	544	Cytoplasmic (Potential).|II.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GTTGCTCAGCGACGTCCAATA	0.607000													61	4					0	0	0.00361006	0	0
TNNI1	7135	broad.mit.edu	37	1	201386941	201386941	+	Splice_Site	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:201386941C>T	uc010ppq.1	-	2	75	c.-18_splice	c.e2-1		TNNI1_uc001gwo.1_Splice_Site|TNNI1_uc001gwp.2_Splice_Site	NM_003281	NP_003272	P19237	TNNI1_HUMAN	troponin I, skeletal, slow						muscle filament sliding|regulation of striated muscle contraction	cytosol|troponin complex	actin binding|tropomyosin binding				0						GAGACAGCACCTAGGGGGCAC	0.592000													24	19					0	0	0.00127121	0	0
ARL8A	127829	broad.mit.edu	37	1	202113662	202113662	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:202113662C>T	uc001gxk.1	-	1	205	c.39G>A	c.(37-39)AAG>AAA	p.K13K		NM_138795	NP_620150	Q96BM9	ARL8A_HUMAN	ADP-ribosylation factor-like 8A	13					cell division|chromosome segregation|mitosis|small GTPase mediated signal transduction	late endosome membrane|lysosomal membrane|midbody|spindle midzone	alpha-tubulin binding|beta-tubulin binding|GTP binding|GTPase activity			ovary(2)	2						AGAATAGGGCCTTGAACCAGT	0.662000													50	4					0	0	0.00361006	0	0
NFASC	23114	broad.mit.edu	37	1	204944475	204944475	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:204944475G>A	uc001hbj.2	+	15	1963	c.1635G>A	c.(1633-1635)GTG>GTA	p.V545V	NFASC_uc001hbh.2_Silent_p.V545V|NFASC_uc010pqz.1_Silent_p.V539V|NFASC_uc010pra.1_Silent_p.V556V|NFASC_uc001hbi.2_Silent_p.V556V|NFASC_uc010prb.1_Silent_p.V556V|NFASC_uc010prc.1_Silent_p.V112V|NFASC_uc001hbk.1_Silent_p.V366V	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	545	Extracellular (Potential).|Ig-like C2-type 6.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGTGTCGGGTGAAGCACGACC	0.607000											OREG0014142	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	151	19					0	0	0.00361006	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415306	210415306	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:210415306C>T	uc001hhy.2	+	4	874	c.695C>T	c.(694-696)TCT>TTT	p.S232F	SERTAD4_uc009xcw.2_Missense_Mutation_p.S232F	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	232	Ser-rich.						protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		tcctcttcctctccccctTTG	0.328000													46	38					0	0	0.00285205	0	0
FAM71A	149647	broad.mit.edu	37	1	212798411	212798411	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:212798411C>T	uc001hjk.2	+	1	596	c.192C>T	c.(190-192)AAC>AAT	p.N64N	uc010pth.1_Intron	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	64										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		ATGTGCACAACCGTGTCCGTA	0.522000													114	10					0	0	0.00361006	0	0
MOSC1	64757	broad.mit.edu	37	1	220970049	220970049	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:220970049T>C	uc001hms.2	+	3	762	c.514T>C	c.(514-516)TTC>CTC	p.F172L	MOSC1_uc001hmt.2_Missense_Mutation_p.F172L	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	172							molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		GATAACCAGCTTCCTGAAGTC	0.602000													9	57					0	0	0.000442599	0	0
PARP1	142	broad.mit.edu	37	1	226562022	226562022	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:226562022G>A	uc001hqd.3	-	14	2146	c.1975C>T	c.(1975-1977)CCT>TCT	p.P659S		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	659					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TTGGTGCCAGGATTTACTGTC	0.453000								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					54	12					0	0	0.00361006	0	0
OBSCN	84033	broad.mit.edu	37	1	228401965	228401966	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:228401965_228401966CC>TT	uc009xez.1	+	4	1393_1394	c.1349_1350CC>TT	c.(1348-1350)CCC>CTT	p.P450L	OBSCN_uc001hsn.2_Missense_Mutation_p.P450L|uc001hsm.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	450	Ig-like 5.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CCGGTGGGCCCCGTCCACTGGC	0.693000													68	50					0	0	6.4e-05	0	0
OBSCN	84033	broad.mit.edu	37	1	228475527	228475527	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:228475527C>T	uc009xez.1	+	36	9721	c.9677C>T	c.(9676-9678)CCA>CTA	p.P3226L	OBSCN_uc001hsn.2_Missense_Mutation_p.P3226L|OBSCN_uc001hsq.1_Missense_Mutation_p.P482L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3226	Ig-like 32.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GTCCTGAGGCCAGGTGACAAA	0.637000													31	51					0	0	0.00428921	0	0
AGT	183	broad.mit.edu	37	1	230841909	230841909	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:230841909C>T	uc001hty.3	-	3	1402	c.894G>A	c.(892-894)CAG>CAA	p.Q298Q	AGT_uc009xfe.2_Silent_p.Q298Q|AGT_uc009xff.2_Silent_p.Q270Q	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	298					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	CCCAGAACTCCTGGGGCTCGG	0.582000													18	48					0	0	0.000958276	0	0
ACTN2	88	broad.mit.edu	37	1	236920792	236920792	+	Missense_Mutation	SNP	C	T	T	rs149433837	byFrequency	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:236920792C>T	uc001hyf.2	+	18	2365	c.2161C>T	c.(2161-2163)CGT>TGT	p.R721C	ACTN2_uc001hyg.2_Missense_Mutation_p.R513C|ACTN2_uc009xgi.1_Missense_Mutation_p.R721C|ACTN2_uc010pxu.1_Missense_Mutation_p.R410C|ACTN2_uc001hyh.2_Missense_Mutation_p.R409C	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	721	Spectrin 4.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			ATAGCACATTCGTGTTGGATG	0.502000													64	14					0	0	0.00361006	0	0
CHRM3	1131	broad.mit.edu	37	1	240072373	240072374	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:240072373_240072374CC>TT	uc001hyp.2	+	5	2401_2402	c.1622_1623CC>TT	c.(1621-1623)CCC>CTT	p.P541L		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	541	Helical; Name=7; (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	ACCGTGAACCCCGTGTGCTATG	0.485000													64	11					0	0	6.4e-05	0	0
FMN2	56776	broad.mit.edu	37	1	240341305	240341305	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:240341305C>T	uc010pyd.1	+	3	2092	c.1867C>T	c.(1867-1869)CCA>TCA	p.P623S	FMN2_uc010pye.1_Missense_Mutation_p.P623S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	623					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TAGGCGAGTTCCATCCATGGG	0.458000													65	11					0	0	0.00361006	0	0
EXO1	9156	broad.mit.edu	37	1	242042408	242042408	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:242042408C>T	uc001hzh.2	+	13	2412	c.1872C>T	c.(1870-1872)CCC>CCT	p.P624P	EXO1_uc001hzi.2_Silent_p.P624P|EXO1_uc001hzj.2_Silent_p.P624P|EXO1_uc009xgq.2_Silent_p.P623P	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	624	Interaction with MSH2.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			CGCCGAGCCCCTCTCCAAGCA	0.473000								Direct_reversal_of_damage|Editing_and_processing_nucleases					99	11					0	0	0.00361006	0	0
OR2L2	26246	broad.mit.edu	37	1	248202182	248202182	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:248202182T>A	uc001idw.2	+	1	709	c.613T>A	c.(613-615)TTT>ATT	p.F205I	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CAGCACCATCTTTCTTGTGCT	0.483000													46	201					0	0	0.00361006	0	0
OR2L3	391192	broad.mit.edu	37	1	248224303	248224303	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:248224303G>A	uc001idx.1	+	1	320	c.320G>A	c.(319-321)GGA>GAA	p.G107E	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TCGGCATTAGGAGGTGCAGAA	0.438000													133	117					0	0	0.00361006	0	0
OR2M2	391194	broad.mit.edu	37	1	248343953	248343953	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:248343953T>C	uc010pzf.1	+	1	666	c.666T>C	c.(664-666)ATT>ATC	p.I222I		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTCGAGTTATTCTGGCTGTCA	0.438000													11	443					0	0	0.00244969	0	0
OR2M2	391194	broad.mit.edu	37	1	248344023	248344023	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:248344023A>T	uc010pzf.1	+	1	736	c.736A>T	c.(736-738)ATG>TTG	p.M246L		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTCTCACCTCATGGTGGTGGG	0.483000													13	299					0	0	0.00188189	0	0
SEC61A2	55176	broad.mit.edu	37	10	12200002	12200002	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:12200002C>T	uc001ile.2	+	9	1020	c.873C>T	c.(871-873)ATC>ATT	p.I291I	SEC61A2_uc010qbq.1_Silent_p.I269I|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Silent_p.I291I	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	291	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				ACATCCCCATCATCCTCCAGT	0.483000													419	86					0	0	0.00361006	0	0
MPP7	143098	broad.mit.edu	37	10	28409268	28409268	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:28409268G>A	uc001iua.1	-	12	1146	c.742C>T	c.(742-744)CCA>TCA	p.P248S	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.P248S|MPP7_uc009xla.2_Missense_Mutation_p.P248S|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	248	SH3.				establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TCCTTACATGGAATTGCCTTA	0.363000													43	56					0	0	0.00361006	0	0
NRP1	8829	broad.mit.edu	37	10	33559629	33559629	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:33559629G>A	uc001iwx.3	-	3	927	c.404C>T	c.(403-405)TCC>TTC	p.S135F	NRP1_uc001iwv.3_Missense_Mutation_p.S135F|NRP1_uc009xlz.2_Missense_Mutation_p.S135F|NRP1_uc001iww.3_Intron|NRP1_uc001iwy.3_Missense_Mutation_p.S135F|NRP1_uc001iwz.2_Missense_Mutation_p.S135F|NRP1_uc001ixa.2_Missense_Mutation_p.S135F|NRP1_uc001ixb.1_Missense_Mutation_p.S135F|NRP1_uc001ixc.1_Missense_Mutation_p.S135F	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	135	CUB 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	ATAACGTATGGAAAATCCTGC	0.343000													31	13					0	0	0.00428921	0	0
ZNF33A	7581	broad.mit.edu	37	10	38344475	38344475	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:38344475G>T	uc001izh.2	+	5	1598	c.1420G>T	c.(1420-1422)GGG>TGG	p.G474W	ZNF33A_uc001izg.2_Missense_Mutation_p.G475W|ZNF33A_uc010qev.1_Missense_Mutation_p.G481W|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	474	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						TCTTGAGTGTGGGAAATCCTT	0.378000													16	5					3.32936e-07	1.08731e-06	0.00074312	1	0
ZNF485	220992	broad.mit.edu	37	10	44111922	44111922	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:44111922C>T	uc010qfc.1	+	5	625	c.431C>T	c.(430-432)TCC>TTC	p.S144F	ZNF485_uc010qfd.1_Missense_Mutation_p.S53F	NM_145312	NP_660355	Q8NCK3	ZN485_HUMAN	zinc finger protein 485	144	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TACAATTCGTCCTTTATTAGC	0.418000													29	11					0	0	0.00106085	0	0
LRRC18	474354	broad.mit.edu	37	10	50121774	50121774	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:50121774G>A	uc001jhd.2	-	1	507	c.427C>T	c.(427-429)CTG>TTG	p.L143L	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.L143L	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	143	LRR 5.					cytoplasm				ovary(1)|pancreas(1)	2						AGCTCCTTCAGGGCCCCCAGT	0.577000													9	9					0	0	0.000442599	0	0
ARID5B	84159	broad.mit.edu	37	10	63851157	63851157	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:63851157C>T	uc001jlt.1	+	10	1961	c.1935C>T	c.(1933-1935)ACC>ACT	p.T645T		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	645					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					TCAAGCAGACCCCAAAGGTCC	0.532000													12	4					0	0	0.000978159	0	0
ARID5B	84159	broad.mit.edu	37	10	63852296	63852296	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:63852296G>A	uc001jlt.1	+	10	3100	c.3074G>A	c.(3073-3075)GGG>GAG	p.G1025E		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1025					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					GTGATTGCAGGGAAAAAGGCC	0.597000													50	16					0	0	0.00361006	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99023380	99023380	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:99023380C>G	uc001knb.2	-	4	439	c.410G>C	c.(409-411)CGA>CCA	p.R137P	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.R128P|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.R137P|ARHGAP19_uc009xvk.2_Intron	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	137	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		ACCCTCTACTCGCAAGTCTGT	0.373000													29	13					0	0	0.00209593	0	0
ABCC2	1244	broad.mit.edu	37	10	101578963	101578963	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:101578963G>A	uc001kqf.2	+	19	2696	c.2557G>A	c.(2557-2559)GGA>AGA	p.G853R		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	853	Cytoplasmic (By similarity).|ABC transporter 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGCCAAAAAAGGAGAGTTTGC	0.438000													51	12					0	0	0.00361006	0	0
SUFU	51684	broad.mit.edu	37	10	104264003	104264003	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:104264003C>T	uc001kvy.1	+	1	240	c.94C>T	c.(94-96)CCG>TCG	p.P32S	SUFU_uc001kvw.1_Missense_Mutation_p.P32S|SUFU_uc001kvx.2_Missense_Mutation_p.P32S|ACTR1A_uc001kvv.2_5'Flank|ACTR1A_uc010qqn.1_5'Flank|ACTR1A_uc010qqo.1_5'Flank	NM_016169	NP_057253	Q9UMX1	SUFU_HUMAN	suppressor of fused	32					negative regulation of transcription from RNA polymerase II promoter|proteolysis|skeletal system development	cytoplasm|nucleus	identical protein binding|protein binding|signal transducer activity|transcription corepressor activity|transcription factor binding			central_nervous_system(4)|skin(2)|breast(1)	7		Colorectal(252;0.207)		Epithelial(162;1.36e-08)|all cancers(201;3.81e-07)|BRCA - Breast invasive adenocarcinoma(275;0.242)		GCTCTTTCCCCCGGGACTGCA	0.458000			D|F|S		medulloblastoma	medulloblastoma			Medulloblastoma_associated_with_Germline_SUFU_Mutation				8	4					0	0	0.00307968	0	0
SMC3	9126	broad.mit.edu	37	10	112356234	112356234	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:112356234A>T	uc001kze.2	+	19	2168	c.2042A>T	c.(2041-2043)GAT>GTT	p.D681V		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	681	Potential.				cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		TTGCAAAAAGATGTTAGAAAA	0.373000													34	6					0	0	0.000953801	0	0
C10orf96	374355	broad.mit.edu	37	10	118101634	118101634	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:118101634G>A	uc001lck.2	+	5	620	c.369G>A	c.(367-369)AAG>AAA	p.K123K		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	123	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		AAATAACAAAGAAAAGAGAGC	0.279000													49	11					0	0	0.00361006	0	0
CPXM2	119587	broad.mit.edu	37	10	125601889	125601889	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:125601889G>A	uc001lhk.1	-	4	954	c.629C>T	c.(628-630)ACT>ATT	p.T210I	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	210	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		CCTCCCTTGAGTGATGACACC	0.522000													43	9					0	0	0.00361006	0	0
MKI67	4288	broad.mit.edu	37	10	129903722	129903722	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:129903722T>C	uc001lke.2	-	13	6577	c.6382A>G	c.(6382-6384)AGG>GGG	p.R2128G	MKI67_uc001lkf.2_Missense_Mutation_p.R1768G|MKI67_uc009yav.1_Missense_Mutation_p.R1703G|MKI67_uc009yaw.1_Missense_Mutation_p.R1278G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2128	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ACTATATCCCTTTTCCCCAAA	0.483000													4	232					0	0	0.000602214	0	0
MKI67	4288	broad.mit.edu	37	10	129913965	129913965	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:129913965G>A	uc001lke.2	-	7	902	c.707C>T	c.(706-708)CCC>CTC	p.P236L	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	236					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTTCCAAAAGGGAGATTCATT	0.333000													31	8					0	0	0.001512	0	0
FRG2B	441581	broad.mit.edu	37	10	135440205	135440205	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr10:135440205G>A	uc010qvg.1	-	1	95	c.42C>T	c.(40-42)TCC>TCT	p.S14S		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	14						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		AGCACTGGATGGAGGAGCAGT	0.507000													26	191					0	0	0.00128727	0	0
DEAF1	10522	broad.mit.edu	37	11	674772	674772	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:674772G>A	uc001lqq.1	-	10	1960	c.1267C>T	c.(1267-1269)CTG>TTG	p.L423L	DEAF1_uc009ycf.1_RNA	NM_021008	NP_066288	O75398	DEAF1_HUMAN	deformed epidermal autoregulatory factor 1	423	Pro-rich.				embryonic skeletal system development|germ cell development|neural tube closure|regulation of mammary gland epithelial cell proliferation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|cytoplasm|extracellular region|nucleus	protein binding|zinc ion binding				0		all_cancers(49;1.24e-08)|all_epithelial(84;1.87e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;1.76e-27)|Epithelial(43;8.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.55e-21)|BRCA - Breast invasive adenocarcinoma(625;4.83e-05)|Lung(200;0.0259)|LUSC - Lung squamous cell carcinoma(625;0.075)		AGCGCAGGCAGGGATGTCAAC	0.512000													61	18					0	0	0.00361006	0	0
LOC650368	650368	broad.mit.edu	37	11	3427765	3427765	+	RNA	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:3427765G>C	uc010qxs.1	+	9		c.758G>C			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CACACGTCCTGCAGTGGCCTG	0.602000													3	26					0	0	0.00024832	0	0
OR52E2	119678	broad.mit.edu	37	11	5080256	5080256	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:5080256C>T	uc010qyw.1	-	1	602	c.602G>A	c.(601-603)GGT>GAT	p.G201D		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		GGCACATAAACCATAAATAAT	0.408000													26	7					0	0	0.00395357	0	0
OR56A5	390084	broad.mit.edu	37	11	5988893	5988893	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:5988893G>A	uc010qzu.1	-	1	832	c.832C>T	c.(832-834)CTG>TTG	p.L278L		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	278	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ATGTTGAGCAGGATGGGGACA	0.522000													12	7					0	0	0.00244969	0	0
OR2D3	120775	broad.mit.edu	37	11	6942547	6942547	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:6942547G>A	uc010rav.1	+	1	315	c.315G>A	c.(313-315)AGG>AGA	p.R105R		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	105	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGGTAAAGAGGAAAACCATTT	0.418000													71	22					0	0	0.00361006	0	0
PEX16	9409	broad.mit.edu	37	11	45939015	45939015	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:45939015C>A	uc001nbu.2	-	2	454	c.142G>T	c.(142-144)GAG>TAG	p.E48*	PEX16_uc001nbt.2_Nonsense_Mutation_p.E48*	NM_004813	NP_004804	Q9Y5Y5	PEX16_HUMAN	peroxisomal biogenesis factor 16 isoform 1	48	Cytoplasmic (Potential).				ER-dependent peroxisome organization|peroxisome membrane biogenesis|protein import into peroxisome matrix|protein import into peroxisome membrane	endoplasmic reticulum membrane|integral to peroxisomal membrane	protein C-terminus binding			ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.223)		TCACCCAGCTCTGACAGCTCG	0.647000													14	4					3.32936e-07	1.08731e-06	0.00074312	1	0
ZNF408	79797	broad.mit.edu	37	11	46726422	46726422	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:46726422G>T	uc001nde.1	+	5	1402	c.1172G>T	c.(1171-1173)AGC>ATC	p.S391I	ZNF408_uc010rgw.1_Missense_Mutation_p.S383I	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	391	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						AAGAGCTATAGCTCAGAGGAG	0.577000													36	7					1.08052e-11	3.56422e-11	0.00428921	1	0
LRRC55	219527	broad.mit.edu	37	11	56949896	56949896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:56949896C>T	uc001njl.1	+	1	676	c.529C>T	c.(529-531)CAG>TAG	p.Q177*		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	147	LRR 3.					integral to membrane					0						CGACATGTTCCAGGAGGCCCA	0.612000													12	3					0	0	0.000978159	0	0
MS4A1	931	broad.mit.edu	37	11	60230551	60230551	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:60230551C>T	uc001npp.2	+	4	652	c.236C>T	c.(235-237)CCC>CTC	p.P79L	MS4A1_uc009ymy.1_Missense_Mutation_p.P79L|MS4A1_uc001npq.2_Missense_Mutation_p.P79L|MS4A1_uc009yna.2_Missense_Mutation_p.P79L|MS4A1_uc009ymz.2_Missense_Mutation_p.P79L|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	79	Helical; (Potential).|Epitope 1.				B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	ATCTATGCACCCATCTGTGTG	0.507000													54	21					0	0	0.00361006	0	0
SLC22A6	9356	broad.mit.edu	37	11	62752150	62752150	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:62752150C>T	uc001nwk.2	-	1	320	c.13G>A	c.(13-15)GAC>AAC	p.D5N	SLC22A6_uc001nwl.2_Missense_Mutation_p.D5N|SLC22A6_uc001nwj.2_Missense_Mutation_p.D5N|SLC22A6_uc001nwm.2_Missense_Mutation_p.D5N	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	5	Cytoplasmic (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						TGCAGGAGGTCATTAAAGGCC	0.647000													15	6					0	0	0.000566183	0	0
ESRRA	2101	broad.mit.edu	37	11	64074719	64074719	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:64074719C>T	uc001nzq.1	+	2	245	c.68C>T	c.(67-69)CCA>CTA	p.P23L	ESRRA_uc001nzr.1_Missense_Mutation_p.P23L|ESRRA_uc001nzs.1_Missense_Mutation_p.P23L	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	23	Repressor domain.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						CCTGACAGTCCAAAGGGTTCC	0.647000													15	6					0	0	0.00400662	0	0
CDC42EP2	10435	broad.mit.edu	37	11	65088607	65088607	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:65088607G>A	uc001odl.2	+	2	688	c.238G>A	c.(238-240)GAC>AAC	p.D80N		NM_006779	NP_006770	O14613	BORG1_HUMAN	Cdc42 effector protein 2	80					actin filament organization|positive regulation of actin filament polymerization|positive regulation of pseudopodium assembly|regulation of cell shape	cytoplasm|cytoskeleton|endomembrane system|plasma membrane	GTP-Rho binding|Rho GTPase activator activity				0						TGGCACCTTCGACCTCCCCTT	0.647000													22	12					0	0	0.00152264	0	0
BBS1	582	broad.mit.edu	37	11	66299150	66299150	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:66299150C>T	uc001oij.1	+	16	1644	c.1632C>T	c.(1630-1632)CTC>CTT	p.L544L	BBS1_uc001oii.1_Silent_p.L581L|BBS1_uc010rpg.1_Silent_p.L447L|BBS1_uc001oik.1_Silent_p.L468L|BBS1_uc001oil.1_Silent_p.L415L|ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron|BBS1_uc010rph.1_Silent_p.L212L	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	544					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						TGCCAGGGCTCAACTACCCCC	0.493000									Bardet-Biedl_syndrome				42	56					0	0	0.00361006	0	0
TCIRG1	10312	broad.mit.edu	37	11	67816651	67816651	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:67816651C>T	uc001one.2	+	15	1885	c.1777C>T	c.(1777-1779)CTG>TTG	p.L593L	TCIRG1_uc001ong.2_Silent_p.L377L|TCIRG1_uc001onh.2_Silent_p.L295L|TCIRG1_uc001oni.2_Silent_p.L97L|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	593	Helical; (Potential).				ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						CTACAAGTGGCTGTGTGTCTG	0.607000													66	10					0	0	0.00361006	0	0
LRP5	4041	broad.mit.edu	37	11	68153788	68153788	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:68153788C>T	uc001ont.2	+	6	1095	c.1020C>T	c.(1018-1020)GCC>GCT	p.A340A	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	340	Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CCACAGGAGCCGAGGAGGTGC	0.662000													20	10					0	0	0.000720815	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74876892	74876892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:74876892C>T	uc001owb.2	+	4	733	c.346C>T	c.(346-348)CGA>TGA	p.R116*	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Intron|SLCO2B1_uc010rrs.1_5'UTR|SLCO2B1_uc001owc.2_5'UTR|SLCO2B1_uc001owd.2_Nonsense_Mutation_p.R94*	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	116	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GCACCGACCCCGAATGATTGG	0.572000													71	20					0	0	0.00361006	0	0
MYO7A	4647	broad.mit.edu	37	11	76909646	76909646	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:76909646C>T	uc001oyb.2	+	34	4820	c.4548C>T	c.(4546-4548)ATC>ATT	p.I1516I	MYO7A_uc010rsm.1_Silent_p.I1505I|MYO7A_uc001oyc.2_Silent_p.I1516I|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Silent_p.I727I	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1516	FERM 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TCCCAGAGATCATGGCCGTGT	0.602000													15	5					0	0	0.00316338	0	0
GRM5	2915	broad.mit.edu	37	11	88241888	88241888	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:88241888C>T	uc001pcq.2	-	9	3711	c.3511G>A	c.(3511-3513)GAC>AAC	p.D1171N	GRM5_uc009yvm.2_Missense_Mutation_p.D1139N	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	1171	Cytoplasmic (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TCCACCGAGTCTCTGAAGGGG	0.667000													8	1					0	0	0.000274275	0	0
TRIM49	57093	broad.mit.edu	37	11	89531552	89531552	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:89531552C>T	uc001pdb.2	-	8	1434	c.1105G>A	c.(1105-1107)GAG>AAG	p.E369K		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	369	B30.2/SPRY.					intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				TCTATCTTCTCATTCTGATTC	0.433000													25	14					0	0	0.00106085	0	0
FAT3	120114	broad.mit.edu	37	11	92624019	92624019	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:92624019G>A	uc001pdj.3	+	25	13431	c.13414G>A	c.(13414-13416)GAT>AAT	p.D4472N	FAT3_uc001pdi.3_Missense_Mutation_p.D944N	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4504	Pro-rich.|Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAACGAAACGGATTTGGTGGG	0.587000										TCGA Ovarian(4;0.039)			212	53					0	0	0.00361006	0	0
SLC35F2	54733	broad.mit.edu	37	11	107686587	107686587	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:107686587G>T	uc001pjq.2	-	2	636	c.215C>A	c.(214-216)CCC>CAC	p.P72H	SLC35F2_uc010rvu.1_Intron|SLC35F2_uc001pjs.2_Missense_Mutation_p.P72H	NM_017515	NP_059985	Q8IXU6	S35F2_HUMAN	solute carrier family 35, member F2	72					transport	integral to membrane				central_nervous_system(1)	1		all_cancers(61;9.46e-06)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;0.000111)|all_hematologic(158;0.000315)|all_epithelial(67;0.00197)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)|Epithelial(105;0.000105)|all cancers(92;0.00217)		CTGAAGCATGGGGGTGTTCAC	0.398000													23	42					3.7963e-18	1.25699e-17	0.00332997	1	0
TTC12	54970	broad.mit.edu	37	11	113220815	113220815	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:113220815C>T	uc001pnu.2	+	14	1280	c.1175C>T	c.(1174-1176)TCA>TTA	p.S392L	TTC12_uc001pnv.2_Missense_Mutation_p.S398L|TTC12_uc001pnw.2_RNA|TTC12_uc001pnx.2_Missense_Mutation_p.S242L	NM_017868	NP_060338	Q9H892	TTC12_HUMAN	tetratricopeptide repeat domain 12	392							binding			pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4		all_cancers(61;2.73e-16)|all_epithelial(67;8.64e-10)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.183)|Renal(330;0.187)		BRCA - Breast invasive adenocarcinoma(274;5.3e-06)|Epithelial(105;8.37e-05)|all cancers(92;0.000694)		GCGCTGGTGTCATTTCTTGAT	0.413000													21	57					0	0	0.00229938	0	0
DSCAML1	57453	broad.mit.edu	37	11	117389342	117389342	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:117389342C>T	uc001prh.1	-	7	1531	c.1529G>A	c.(1528-1530)CGG>CAG	p.R510Q	DSCAML1_uc001pri.1_Missense_Mutation_p.R314Q	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	450	Extracellular (Potential).|Ig-like C2-type 5.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GCTGCCATCCCGCACGATGGG	0.672000													9	21					0	0	0.000274275	0	0
UPK2	7379	broad.mit.edu	37	11	118828856	118828857	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:118828856_118828857GG>AA	uc001puh.2	+	5	503_504	c.468_469GG>AA	c.(466-471)ATGGTG>ATAATG	p.156_157MV>IM		NM_006760	NP_006751	O00526	UPK2_HUMAN	uroplakin 2 precursor	156_157	Helical; (Potential).				cellular membrane organization|epithelial cell differentiation|multicellular organismal development	integral to endoplasmic reticulum membrane|integral to plasma membrane				skin(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.122)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.47e-05)		CAGGGGGCATGGTGGTCATCAC	0.624000													25	13					0	0	6.4e-05	0	0
HMBS	3145	broad.mit.edu	37	11	118960442	118960443	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:118960442_118960443CC>TT	uc001puz.1	+	6	473_474	c.316_317CC>TT	c.(316-318)CCT>TTT	p.P106F	HMBS_uc009zao.1_Missense_Mutation_p.P51F|HMBS_uc001pvc.1_Missense_Mutation_p.P51F|HMBS_uc009zap.1_Missense_Mutation_p.P89F|HMBS_uc001pva.1_Missense_Mutation_p.P106F|HMBS_uc001pvb.1_Missense_Mutation_p.P88F|HMBS_uc001pvd.1_Missense_Mutation_p.P89F|HMBS_uc001pve.1_Missense_Mutation_p.P89F|HMBS_uc001pvf.1_Missense_Mutation_p.P89F	NM_000190	NP_000181	P08397	HEM3_HUMAN	hydroxymethylbilane synthase isoform 1	106					peptidyl-pyrromethane cofactor linkage	cytosol	hydroxymethylbilane synthase activity				0	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.72e-05)		TGTGCTTCCTCCTGGCTTCACC	0.554000									Porphyria_Acute_Intermittent				12	4					0	0	6.4e-05	0	0
C11orf63	79864	broad.mit.edu	37	11	122775096	122775096	+	Missense_Mutation	SNP	A	T	T	rs145494873		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:122775096A>T	uc001pym.2	+	3	1105	c.808A>T	c.(808-810)ACG>TCG	p.T270S	C11orf63_uc001pyl.1_Missense_Mutation_p.T270S	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	270										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		CACCCCGAAAACGGACTCTTA	0.433000													144	43					0	0	0.00361006	0	0
OR6X1	390260	broad.mit.edu	37	11	123624842	123624842	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:123624842G>A	uc010rzy.1	-	1	385	c.385C>T	c.(385-387)CAC>TAC	p.H129Y		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GTGGGGTGGTGAAGGGGATTG	0.552000													28	8					0	0	0.000878237	0	0
VWA5A	4013	broad.mit.edu	37	11	123988472	123988472	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:123988472C>T	uc001pzu.2	+	4	345	c.136C>T	c.(136-138)CCT>TCT	p.P46S	VWA5A_uc001pzr.2_Missense_Mutation_p.P46S|VWA5A_uc001pzs.2_Missense_Mutation_p.P46S|VWA5A_uc010sae.1_Missense_Mutation_p.P62S|VWA5A_uc001pzt.2_Missense_Mutation_p.P46S	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	46	VIT.									upper_aerodigestive_tract(1)|ovary(1)	2						GGAGAAAGTTCCTTTGGAGGC	0.458000													53	12					0	0	0.00361006	0	0
OR8B3	390271	broad.mit.edu	37	11	124266884	124266884	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:124266884G>A	uc010saj.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R122H(1)		ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GCCACATAGCGATCATATGCC	0.408000													10	2					0	0	0.000442599	0	0
CDON	50937	broad.mit.edu	37	11	125864781	125864781	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:125864781G>A	uc009zbw.2	-	13	2657	c.2529C>T	c.(2527-2529)ATC>ATT	p.I843I	CDON_uc001qdb.3_Silent_p.I220I|CDON_uc001qdc.3_Silent_p.I843I	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	843	Extracellular (Potential).|Fibronectin type-III 3.				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		ACTTTAGCATGATCTGAGTAT	0.423000													17	11					0	0	0.000566183	0	0
FLI1	2313	broad.mit.edu	37	11	128680668	128680668	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:128680668C>T	uc010sbu.1	+	9	1485	c.1144C>T	c.(1144-1146)CCT>TCT	p.P382S	FLI1_uc010sbt.1_Missense_Mutation_p.P189S|FLI1_uc010sbv.1_Missense_Mutation_p.P349S|FLI1_uc009zci.2_Missense_Mutation_p.P316S	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	382					hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		GTACAAGTACCCTTCTGACAT	0.527000			T	EWSR1	Ewing sarcoma								16	7					0	0	0.00400662	0	0
PRDM10	56980	broad.mit.edu	37	11	129814858	129814858	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:129814858G>A	uc001qfm.2	-	6	802	c.570C>T	c.(568-570)GGC>GGT	p.G190G	PRDM10_uc001qfj.2_Silent_p.G104G|PRDM10_uc001qfk.2_Silent_p.G104G|PRDM10_uc001qfl.2_Silent_p.G104G|PRDM10_uc010sbx.1_Silent_p.G104G|PRDM10_uc001qfn.2_Silent_p.G190G|PRDM10_uc009zct.1_Silent_p.G222G	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	190					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		GGTGCAAGGGGCCGTGCTTCG	0.587000													20	3					0	0	0.00121646	0	0
KCNA1	3736	broad.mit.edu	37	12	5021551	5021551	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:5021551G>A	uc001qnh.2	+	2	2112	c.1007G>A	c.(1006-1008)GGG>GAG	p.G336E		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	336	Helical; Name=Segment S5; (Potential).				synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTCTTCATCGGGGTCATCCTG	0.552000													23	56					0	0	0.00188189	0	0
ANO2	57101	broad.mit.edu	37	12	5941659	5941659	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:5941659C>T	uc001qnm.2	-	5	804	c.732G>A	c.(730-732)ATG>ATA	p.M244I		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	249	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AGAGGTTTTTCATCTTGTTGT	0.502000													39	35					0	0	0.0025221	0	0
ANO2	57101	broad.mit.edu	37	12	5963294	5963294	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:5963294C>T	uc001qnm.2	-	4	608	c.536G>A	c.(535-537)GGA>GAA	p.G179E		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	183	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						AAAGATGGATCCCTGGCTTTT	0.453000													132	82					0	0	0.00361006	0	0
LAG3	3902	broad.mit.edu	37	12	6887035	6887035	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:6887035C>T	uc001qqt.3	+	7	1728	c.1379C>T	c.(1378-1380)TCT>TTT	p.S460F	LAG3_uc001qqu.2_Missense_Mutation_p.S290F	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	460	Helical; (Potential).					integral to membrane	antigen binding|MHC class II protein binding				0						GGTGTCCTTTCTCTGCTCCTT	0.587000													27	89					0	0	0.001512	0	0
CD163L1	283316	broad.mit.edu	37	12	7596704	7596704	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:7596704G>A	uc001qsy.2	-	1	46	c.20C>T	c.(19-21)TCG>TTG	p.S7L	CD163L1_uc010sge.1_Missense_Mutation_p.S7L	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	7						extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AATATGCCACGAGTTTTGAGG	0.378000													14	43					0	0	0.00400662	0	0
GDF3	9573	broad.mit.edu	37	12	7848116	7848116	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:7848116A>G	uc001qte.2	-	1	245	c.209T>C	c.(208-210)TTA>TCA	p.L70S		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	70					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						TACGTAGCATAAGTCTCGGGA	0.507000													12	40					0	0	0.00185496	0	0
SLC2A14	144195	broad.mit.edu	37	12	7972128	7972128	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:7972128C>T	uc001qtk.2	-	14	1883	c.1090G>A	c.(1090-1092)GGA>AGA	p.G364R	SLC2A14_uc001qtl.2_Missense_Mutation_p.G341R|SLC2A14_uc001qtm.2_Missense_Mutation_p.G341R|SLC2A14_uc010sgg.1_Missense_Mutation_p.G255R|SLC2A14_uc001qtn.2_Missense_Mutation_p.G364R|SLC2A14_uc001qto.2_5'UTR|SLC2A14_uc010sgh.1_Missense_Mutation_p.G379R	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	364	Helical; Name=9; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		GCCATCCCTCCAAGGCCTATC	0.418000													49	52					0	0	0.00361006	0	0
A2ML1	144568	broad.mit.edu	37	12	8982345	8982346	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:8982345_8982346GG>AA	uc001quz.3	+	4	530_531	c.432_433GG>AA	c.(430-435)ATGGAT>ATAAAT	p.144_145MD>IN		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	Error:Variant_position_missing_in_B3KVV6_after_alignment						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TTGTCACCATGGATAGCAACTT	0.426000													23	66					0	0	6.4e-05	0	0
A2M	2	broad.mit.edu	37	12	9232411	9232411	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:9232411C>T	uc001qvk.1	-	24	2968	c.2855G>A	c.(2854-2856)GGA>GAA	p.G952E	A2M_uc001qvj.1_5'UTR|A2M_uc009zgk.1_Missense_Mutation_p.G802E	NM_000014	NP_000005	P01023	A2MG_HUMAN	alpha-2-macroglobulin precursor	952					blood coagulation, intrinsic pathway|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|extracellular space|platelet alpha granule lumen	enzyme binding|GTPase activator activity|interleukin-1 binding|interleukin-8 binding|serine-type endopeptidase inhibitor activity|tumor necrosis factor binding			central_nervous_system(4)|skin(1)	5					Bacitracin(DB00626)|Becaplermin(DB00102)	TAATATGTCTCCTAGAGAATG	0.388000													12	7					0	0	0.00316338	0	0
LRP6	4040	broad.mit.edu	37	12	12315309	12315309	+	Silent	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:12315309C>A	uc001rah.3	-	10	2239	c.2097G>T	c.(2095-2097)GTG>GTT	p.V699V	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.V699V	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	699	Extracellular (Potential).|Beta-propeller 3.|LDL-receptor class B 11.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CGAATTCTACCACATGTTCCA	0.443000													11	571					0.00185496	0.00602804	0.00185496	1	0
GRIN2B	2904	broad.mit.edu	37	12	13906626	13906626	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:13906626C>T	uc001rbt.2	-	3	814	c.635G>A	c.(634-636)GGA>GAA	p.G212E		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	212	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTTAGAATCTCCATCGTCCAG	0.473000													47	43					0	0	0.00361006	0	0
ABCC9	10060	broad.mit.edu	37	12	21967600	21967600	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:21967600G>A	uc001rfi.1	-	33	4100	c.4080C>T	c.(4078-4080)TTC>TTT	p.F1360F	ABCC9_uc001rfh.2_Silent_p.F1360F|ABCC9_uc001rfj.1_Silent_p.F1324F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1360	Cytoplasmic (Potential).|ABC transporter 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAACCATTCTGAAGAAAGCCA	0.403000													8	31					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	12	24736653	24736653	+	RNA	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:24736653G>A	uc001rgb.1	-	1		c.450C>T								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		GCTCAGTGGGGAAGGAGGGTG	0.562000													38	37					0	0	0.00222228	0	0
NELL2	4753	broad.mit.edu	37	12	45105169	45105169	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:45105169G>A	uc001rog.2	-	11	1690	c.1095C>T	c.(1093-1095)ACC>ACT	p.T365T	NELL2_uc001rof.3_Silent_p.T364T|NELL2_uc001roh.2_Silent_p.T365T|NELL2_uc009zkd.2_Silent_p.T364T|NELL2_uc010skz.1_Silent_p.T415T|NELL2_uc010sla.1_Silent_p.T388T|NELL2_uc001roi.1_Silent_p.T365T|NELL2_uc010slb.1_Silent_p.T364T|NELL2_uc001roj.2_Silent_p.T365T	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	365	VWFC 2.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CAAGTTTCATGGTCTGGTCCT	0.398000													22	29					0	0	0.00229938	0	0
ARID2	196528	broad.mit.edu	37	12	46230632	46230632	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:46230632G>A	uc001ros.1	+	8	881	c.881G>A	c.(880-882)AGA>AAA	p.R294K	ARID2_uc001ror.2_Missense_Mutation_p.R294K|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	294					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GTGATTTTGAGAAATCTTTCC	0.403000													25	66					0	0	0.000720815	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471693	47471693	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:47471693C>T	uc001rpm.2	-	3	1748	c.1093G>A	c.(1093-1095)GCA>ACA	p.A365T	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.A365T|AMIGO2_uc001rpl.2_Missense_Mutation_p.A365T	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	365	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TTATTCATTGCGATACAAGAA	0.408000													21	69					0	0	0.00188189	0	0
MLL2	8085	broad.mit.edu	37	12	49428682	49428682	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:49428682G>A	uc001rta.3	-	35	10268	c.10268C>T	c.(10267-10269)CCC>CTC	p.P3423L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	3423	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTTTGCAATGGGATCAATGAT	0.507000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			5	31					0	0	0.00116845	0	0
CSRNP2	81566	broad.mit.edu	37	12	51461553	51461553	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:51461553C>A	uc001rxu.1	-	4	909	c.611G>T	c.(610-612)CGA>CTA	p.R204L		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	204					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGGATGGCTCGAAGTTCTTG	0.572000													21	54					3.62473e-10	1.19267e-09	0.00188189	1	0
POU6F1	5463	broad.mit.edu	37	12	51589948	51589948	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:51589948T>C	uc001rxy.2	-	2	246	c.54A>G	c.(52-54)GGA>GGG	p.G18G	POU6F1_uc001rxz.2_Silent_p.G18G|POU6F1_uc001rya.2_Silent_p.G18G	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	18	Gln/Pro-rich.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATGGAAGGGTTCCAATAACCT	0.607000													15	10					0	0	0.00400662	0	0
SCN8A	6334	broad.mit.edu	37	12	52163097	52163097	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:52163097C>T	uc001ryw.2	+	17	3528	c.3350C>T	c.(3349-3351)TCG>TTG	p.S1117L	SCN8A_uc010snl.1_Missense_Mutation_p.S982L	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	1117					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	AGCAGCGAGTCGGATCCTGAA	0.517000													12	22					0	0	0.00244969	0	0
KRT82	3888	broad.mit.edu	37	12	52788947	52788947	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:52788947C>T	uc001sai.1	-	9	1469	c.1354G>A	c.(1354-1356)GAG>AAG	p.E452K		NM_033033	NP_149022	Q9NSB4	KRT82_HUMAN	keratin 82	452	Tail.					keratin filament	protein binding|structural constituent of epidermis			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.193)		CCACATGGCTCGTACAGGAAG	0.617000													5	10					0	0	0.00116845	0	0
KRT71	112802	broad.mit.edu	37	12	52940176	52940176	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:52940176C>T	uc001sao.2	-	7	1289	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	407	Coil 2.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		CGCGCCAGCTCCTCCTTGGCC	0.652000													24	22					0	0	0.00229938	0	0
KRT76	51350	broad.mit.edu	37	12	53170566	53170566	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:53170566C>T	uc001sax.2	-	1	564	c.510G>A	c.(508-510)GTG>GTA	p.V170V		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	170	Head.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GGTCGATCTCCACATTGAGGG	0.478000													6	33					0	0	0.00307968	0	0
KRT8	3856	broad.mit.edu	37	12	53294408	53294408	+	Silent	SNP	G	A	A	rs150187239	byFrequency	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:53294408G>A	uc001sbd.2	-	4	757	c.654C>T	c.(652-654)ACC>ACT	p.T218T	KRT8_uc009zmj.2_Silent_p.T218T|KRT8_uc009zmk.1_Silent_p.T246T|KRT8_uc009zml.1_Silent_p.T218T|KRT8_uc009zmm.1_Silent_p.T218T	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	218	Coil 1B.|Rod.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGATCTCGTCGGTCAGCCCTT	0.572000													29	50					0	0	0.00375469	0	0
EIF4B	1975	broad.mit.edu	37	12	53421881	53421881	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:53421881C>T	uc001sbh.3	+	8	1094	c.888C>T	c.(886-888)GAC>GAT	p.D296D	EIF4B_uc010snu.1_Silent_p.D296D|EIF4B_uc010snv.1_Silent_p.D257D|EIF4B_uc001sbi.2_Silent_p.D48D	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	296	Arg-rich.|Asp-rich.				insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						GAGGCGGGGACCGCTATGAAG	0.493000													40	28					0	0	0.000953801	0	0
TENC1	23371	broad.mit.edu	37	12	53449591	53449591	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:53449591C>T	uc001sbp.2	+	10	858	c.723C>T	c.(721-723)ATC>ATT	p.I241I	uc001sbk.1_5'Flank|TENC1_uc001sbl.2_Silent_p.I117I|TENC1_uc001sbm.2_Silent_p.I281I|TENC1_uc001sbn.2_Silent_p.I251I|TENC1_uc001sbo.1_Silent_p.I241I|TENC1_uc001sbq.2_5'Flank|TENC1_uc001sbr.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	241	Phosphatase tensin-type.				intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						TTGGGGTCATCGTTTCTGCCT	0.597000													71	52					0	0	0.00361006	0	0
HOXC5	3222	broad.mit.edu	37	12	54427019	54427019	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:54427019A>T	uc001sew.2	+	1	188	c.113A>T	c.(112-114)TAC>TTC	p.Y38F	HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron|MIR615_hsa-mir-615|MI0003628_5'Flank	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	38					regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCATCCAGGTACTGCTACGGC	0.557000													30	30					0	0	0.00209593	0	0
MUCL1	118430	broad.mit.edu	37	12	55248394	55248394	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:55248394T>C	uc001sgk.2	+	1	96	c.28T>C	c.(28-30)TTG>CTG	p.L10L		NM_058173	NP_477521	Q96DR8	MUCL1_HUMAN	small breast epithelial mucin precursor	10						extracellular region|membrane					0						CCTGGTACTCTTGGGAGTTTC	0.428000													16	48					0	0	0.000566183	0	0
SMARCC2	6601	broad.mit.edu	37	12	56561944	56561944	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:56561944G>A	uc001skb.2	-	25	2763	c.2657C>T	c.(2656-2658)TCT>TTT	p.S886F	SMARCC2_uc001skd.2_Missense_Mutation_p.S917F|SMARCC2_uc001ska.2_Missense_Mutation_p.S917F|SMARCC2_uc001skc.2_Missense_Mutation_p.S916F|SMARCC2_uc010sqf.1_Missense_Mutation_p.S806F	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	886					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGCCACCAAAGATTTGATCTT	0.517000													30	34					0	0	0.00209593	0	0
SMARCC2	6601	broad.mit.edu	37	12	56568535	56568535	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:56568535G>A	uc001skb.2	-	16	1502	c.1396C>T	c.(1396-1398)CGA>TGA	p.R466*	SMARCC2_uc001skd.2_Nonsense_Mutation_p.R466*|SMARCC2_uc001ska.2_Nonsense_Mutation_p.R466*|SMARCC2_uc001skc.2_Nonsense_Mutation_p.R466*|SMARCC2_uc010sqf.1_Nonsense_Mutation_p.R355*	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	466	SWIRM.				chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			ATAAAGTTTCGATAGGCCAGG	0.428000													67	49					0	0	0.00361006	0	0
SLC39A5	283375	broad.mit.edu	37	12	56629484	56629484	+	Silent	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:56629484A>T	uc010sqj.1	+	8	1202	c.945A>T	c.(943-945)CCA>CCT	p.P315P	SLC39A5_uc010sqi.1_Silent_p.P206P|SLC39A5_uc010sqk.1_Silent_p.P315P	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	315	Cytoplasmic (Potential).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GGCTCAGGCCAGTGAGTGATA	0.488000													67	75					0	0	0.00361006	0	0
R3HDM2	22864	broad.mit.edu	37	12	57662112	57662112	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:57662112G>A	uc009zpm.1	-	16	1997	c.1962C>T	c.(1960-1962)ATC>ATT	p.I654I	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Silent_p.I349I|R3HDM2_uc001snr.2_Silent_p.I381I|R3HDM2_uc001sns.2_Silent_p.I654I|R3HDM2_uc001snt.2_Silent_p.I668I|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	654	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						GAGCAGGTGGGATCATGCTAT	0.567000													12	33					0	0	0.00185496	0	0
FAM119B	25895	broad.mit.edu	37	12	58174169	58174169	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:58174169C>T	uc001sqg.2	+	3	546	c.421C>T	c.(421-423)CCT>TCT	p.P141S	FAM119B_uc001sqf.2_3'UTR|FAM119B_uc009zqd.2_RNA|TSFM_uc001sqi.2_5'Flank|TSFM_uc010sse.1_5'Flank|TSFM_uc001sqh.2_5'Flank|TSFM_uc010ssf.1_5'Flank	NM_015433	NP_056248	Q96AZ1	MT21B_HUMAN	hypothetical protein LOC25895 isoform a	141						integral to membrane|intracellular	methyltransferase activity				0	all_cancers(7;9.07e-82)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					TCATGTCTTCCCTGCAAACTA	0.617000													21	42					0	0	0.00229938	0	0
AVIL	10677	broad.mit.edu	37	12	58203401	58203401	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:58203401C>T	uc001sqj.1	-	8	947	c.918G>A	c.(916-918)CAG>CAA	p.Q306Q	AVIL_uc009zqe.1_Silent_p.Q299Q|AVIL_uc001sqk.1_5'Flank|AVIL_uc001sql.3_Silent_p.Q283Q	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	306	Gelsolin-like 3.|Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					ACATGGCTGCCTGTTTTTCAG	0.468000													17	47					0	0	0.00074312	0	0
MDM1	56890	broad.mit.edu	37	12	68724898	68724898	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:68724898G>A	uc001stz.2	-	2	258	c.122C>T	c.(121-123)TCA>TTA	p.S41L	MDM1_uc010stc.1_Missense_Mutation_p.S41L|MDM1_uc009zqv.1_5'UTR|MDM1_uc001sua.3_Missense_Mutation_p.S41L|MDM1_uc010std.1_Missense_Mutation_p.S41L	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	41						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TAATTGATCTGATCTAAGTCC	0.448000													55	103					0	0	0.00361006	0	0
PTPRB	5787	broad.mit.edu	37	12	71002959	71002959	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:71002959C>T	uc001swb.3	-	2	245	c.215G>A	c.(214-216)CGG>CAG	p.R72Q	PTPRB_uc010sto.1_Missense_Mutation_p.R72Q|PTPRB_uc010stp.1_Missense_Mutation_p.R72Q|PTPRB_uc001swc.3_Missense_Mutation_p.R290Q|PTPRB_uc001swa.3_Missense_Mutation_p.R290Q|PTPRB_uc001swd.3_Missense_Mutation_p.R289Q|PTPRB_uc009zrr.1_Missense_Mutation_p.R169Q|PTPRB_uc001swe.2_Missense_Mutation_p.R290Q	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	72	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTTGTCTATCCGAAAGGTAGG	0.463000													21	39					0	0	0.00229938	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72013120	72013120	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:72013120T>C	uc001swo.2	-	27	5478	c.5119A>G	c.(5119-5121)AAG>GAG	p.K1707E		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1707					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						TTATTATACTTCTCAAACCCC	0.348000													10	30					0	0	0.00136819	0	0
MYF5	4617	broad.mit.edu	37	12	81111198	81111198	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:81111198C>T	uc001szg.2	+	1	491	c.356C>T	c.(355-357)CCC>CTC	p.P119L		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	119	Helix-loop-helix motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CAGAGGCTGCCCAAGGTGGAG	0.587000													14	37					0	0	0.00244969	0	0
ACSS3	79611	broad.mit.edu	37	12	81536990	81536990	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:81536990T>C	uc001szl.1	+	5	976	c.885T>C	c.(883-885)TAT>TAC	p.Y295Y	ACSS3_uc001szm.1_Silent_p.Y294Y	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	295						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						ACCCACTGTATATTCTTTACA	0.443000													9	50					0	0	0.000978159	0	0
ACSS3	79611	broad.mit.edu	37	12	81568698	81568698	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:81568698G>A	uc001szl.1	+	8	1321	c.1230G>A	c.(1228-1230)GGG>GGA	p.G410G	ACSS3_uc001szm.1_Silent_p.G409G|ACSS3_uc001szn.1_Silent_p.G92G	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	410						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CAGCTTTGGGGAAGCAGTACT	0.448000													17	48					0	0	0.00121646	0	0
CEP290	80184	broad.mit.edu	37	12	88486551	88486551	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:88486551G>A	uc001tar.2	-	29	3712	c.3368C>T	c.(3367-3369)GCT>GTT	p.A1123V	CEP290_uc001taq.2_Missense_Mutation_p.A183V	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1123	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CACACTATCAGCTAATTCATC	0.348000													34	125					0	0	0.00111076	0	0
FGD6	55785	broad.mit.edu	37	12	95486565	95486565	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:95486565C>T	uc001tdp.3	-	16	3881	c.3657G>A	c.(3655-3657)TGG>TGA	p.W1219*	FGD6_uc009zsx.2_Nonsense_Mutation_p.W352*|FGD6_uc001tdq.1_Nonsense_Mutation_p.W255*	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	1219					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						TATCAGGAATCCAGATGGGAG	0.493000													12	31					0	0	0.00185496	0	0
ANKS1B	56899	broad.mit.edu	37	12	100219129	100219129	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:100219129G>A	uc001tge.1	-	2	590	c.173C>T	c.(172-174)TCG>TTG	p.S58L	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Missense_Mutation_p.S58L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	58	ANK 2.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		AGTGTAACCCGAACTGTCTGT	0.433000													12	6					0	0	0.00185496	0	0
GLT8D2	83468	broad.mit.edu	37	12	104388185	104388185	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:104388185A>G	uc001tkh.1	-	9	1101	c.695T>C	c.(694-696)GTT>GCT	p.V232A	GLT8D2_uc001tki.1_Missense_Mutation_p.V232A	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	232	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						CATGTTGGCAACAATCACACC	0.468000													16	40					0	0	0.00400662	0	0
SART3	9733	broad.mit.edu	37	12	108932790	108932790	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:108932790G>A	uc001tmz.1	-	7	1217	c.982C>T	c.(982-984)CGC>TGC	p.R328C	SART3_uc001tmy.1_5'UTR|SART3_uc009zux.1_5'UTR|SART3_uc010swx.1_Missense_Mutation_p.R328C|SART3_uc010swy.1_Missense_Mutation_p.R214C|SART3_uc010swz.1_Missense_Mutation_p.R328C|SART3_uc001tna.1_RNA	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	328	HAT 5.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						AACTGAATGCGAGCAGGATCG	0.453000									Porokeratosis				14	19					0	0	0.00185496	0	0
ACACB	32	broad.mit.edu	37	12	109660625	109660625	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:109660625C>T	uc001tob.2	+	26	3819	c.3700C>T	c.(3700-3702)CCC>TCC	p.P1234S	ACACB_uc001toc.2_Missense_Mutation_p.P1234S	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1234					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	CTCCCACCTCCCCTCCTACGA	0.647000													9	21					0	0	0.00244969	0	0
NOS1	4842	broad.mit.edu	37	12	117696239	117696239	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:117696239C>T	uc001twm.1	-	16	3180	c.2494G>A	c.(2494-2496)GAA>AAA	p.E832K	NOS1_uc001twn.1_Missense_Mutation_p.E2K	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	832	Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TGCCTCATTTCCATCAAAGCA	0.498000													17	30					0	0	0.00152264	0	0
CLIP1	6249	broad.mit.edu	37	12	122773082	122773082	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:122773082C>T	uc001ucg.1	-	20	3707	c.3601G>A	c.(3601-3603)GAA>AAA	p.E1201K	CLIP1_uc001uch.1_Missense_Mutation_p.E1190K|CLIP1_uc001uci.1_Missense_Mutation_p.E1155K|CLIP1_uc001ucj.1_Missense_Mutation_p.E776K	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1201	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		GATCTTTCTTCTTCCAGCTAG	0.378000													7	13					0	0	0.00307968	0	0
DNAH10	196385	broad.mit.edu	37	12	124285934	124285934	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:124285934C>T	uc001uft.3	+	15	2240	c.2215C>T	c.(2215-2217)CGA>TGA	p.R739*	DNAH10_uc010tav.1_Nonsense_Mutation_p.R281*|DNAH10_uc010taw.1_Nonsense_Mutation_p.R224*	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	739	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GGAACTGCTCCGAGTGTTTAG	0.433000													23	58					0	0	0.00229938	0	0
MMP17	4326	broad.mit.edu	37	12	132325220	132325221	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:132325220_132325221CC>TT	uc001ujc.1	+	4	624_625	c.525_526CC>TT	c.(523-528)TTCCAC>TTTTAC	p.H176Y	MMP17_uc001ujd.1_Missense_Mutation_p.H92Y	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	176					proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		CCCTGAACTTCCACGAGGTGGC	0.663000													17	57					0	0	6.4e-05	0	0
LOC284232	284232	broad.mit.edu	37	13	19409540	19409540	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:19409540C>T	uc010tcj.1	-	1		c.36570G>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						CTTTCTGTCTCTCATATTGAA	0.299000													28	26					0	0	0.00106085	0	0
XPO4	64328	broad.mit.edu	37	13	21436934	21436935	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:21436934_21436935CG>AT	uc001unq.3	-	3	274_275	c.238_239CG>AT	c.(238-240)CGA>ATA	p.R80I	XPO4_uc010tcr.1_Missense_Mutation_p.R6I	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	80					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AATCCACTCTCGGACAACTGCT	0.401000													8	488					0	0	6.4e-05	0	0
SACS	26278	broad.mit.edu	37	13	23929489	23929489	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:23929489C>T	uc001uon.2	-	8	1851	c.1262G>A	c.(1261-1263)GGA>GAA	p.G421E	SACS_uc001uoo.2_Missense_Mutation_p.G274E|SACS_uc001uop.1_Missense_Mutation_p.G208E|SACS_uc001uoq.1_Missense_Mutation_p.G274E	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	421					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CATGGCTATTCCAATGATTGG	0.433000													29	65					0	0	0.00209593	0	0
SACS	26278	broad.mit.edu	37	13	23939335	23939335	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:23939335G>A	uc001uon.2	-	6	1016	c.427C>T	c.(427-429)CTT>TTT	p.L143F	SACS_uc001uoo.2_5'UTR|SACS_uc001uoq.1_5'UTR	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	143					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TTTGACCAAAGAGTCTCTGTT	0.328000													35	48					0	0	0.000953801	0	0
KL	9365	broad.mit.edu	37	13	33635153	33635153	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:33635153G>A	uc001uus.2	+	4	1945	c.1937G>A	c.(1936-1938)GGA>GAA	p.G646E	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	646	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CCGAACCAAGGACTGCCGCGC	0.632000													32	54					0	0	0.00283554	0	0
AKAP11	11215	broad.mit.edu	37	13	42877958	42877958	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:42877958C>T	uc001uys.1	+	8	5251	c.5076C>T	c.(5074-5076)ACC>ACT	p.T1692T		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1692					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CCACAGAAACCATGACAGCAG	0.463000													16	60					0	0	0.00074312	0	0
PCDH8	5100	broad.mit.edu	37	13	53420356	53420356	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:53420356A>C	uc001vhi.2	-	1	2419	c.2216T>G	c.(2215-2217)GTG>GGG	p.V739G	PCDH8_uc001vhj.2_Missense_Mutation_p.V739G	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	739	Extracellular (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		CGACCCGGACACCCCGAGCCG	0.711000													6	62					0	0	0.00127121	0	0
KLHL1	57626	broad.mit.edu	37	13	70514318	70514318	+	Missense_Mutation	SNP	A	G	G	rs111910043		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:70514318A>G	uc001vip.2	-	4	1662	c.868T>C	c.(868-870)TGC>CGC	p.C290R	KLHL1_uc010thm.1_Missense_Mutation_p.C229R	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	290					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGAAGAAGGCACGCTGCAGCA	0.418000													3	45					0	0	6.4e-05	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455231	84455231	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:84455231C>T	uc001vlk.2	-	1	1298	c.412G>A	c.(412-414)GAT>AAT	p.D138N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	138	LRR 4.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		AAATTAAAATCAGCCTGGAGA	0.463000													69	63					0	0	0.00361006	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370073	86370073	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr13:86370073G>A	uc001vll.1	-	2	1030	c.571C>T	c.(571-573)CGT>TGT	p.R191C	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	191	Extracellular (Potential).|LRR 5.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGATTTCCACGAAGATCTAGA	0.388000													66	110					0	0	0.00361006	0	0
OR4M1	441670	broad.mit.edu	37	14	20248994	20248994	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:20248994C>T	uc010tku.1	+	1	513	c.513C>T	c.(511-513)CCC>CCT	p.P171P		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTGTGGGCCCAATGAGTTAG	0.498000													32	124					0	0	0.00128727	0	0
OR4L1	122742	broad.mit.edu	37	14	20528236	20528236	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:20528236G>A	uc001vwn.1	+	1	33	c.33G>A	c.(31-33)GAG>GAA	p.E11E		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TAGTGACCGAGTTTATTTTAC	0.338000													29	72					0	0	0.00209593	0	0
OR10G2	26534	broad.mit.edu	37	14	22102916	22102916	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:22102916C>T	uc010tmc.1	-	1	83	c.83G>A	c.(82-84)AGA>AAA	p.R28K		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	28	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		GAGGAGGCTTCTTAGATTTGG	0.493000													31	32					0	0	0.00209593	0	0
OR4E2	26686	broad.mit.edu	37	14	22133973	22133973	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:22133973G>A	uc010tmd.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GTTTCTCTTCGAAAACACTCA	0.502000													22	27					0	0	0.00188189	0	0
NYNRIN	57523	broad.mit.edu	37	14	24877078	24877078	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:24877078T>A	uc001wpf.3	+	3	520	c.202T>A	c.(202-204)TAC>AAC	p.Y68N		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	68					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGCCCAGGAATACCTGAAGGG	0.612000													8	28					0	0	0.000274275	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884150	24884151	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:24884150_24884151GG>AA	uc001wpf.3	+	9	3513_3514	c.3195_3196GG>AA	c.(3193-3198)CTGGGC>CTAAGC	p.G1066S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1066					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CTCCCTACCTGGGCATCCCCTG	0.639000													17	26					0	0	6.4e-05	0	0
FRMD6	122786	broad.mit.edu	37	14	52179241	52179242	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:52179241_52179242GG>AA	uc001wzd.2	+	9	1106_1107	c.821_822GG>AA	c.(820-822)TGG>TAA	p.W274*	FRMD6_uc001wzb.2_Nonsense_Mutation_p.W266*|FRMD6_uc001wzc.2_Nonsense_Mutation_p.W266*|FRMD6_uc001wze.2_Nonsense_Mutation_p.W197*|FRMD6_uc001wzf.2_5'Flank	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	274	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					GATTTCCCCTGGACAAATGTTG	0.292000													7	25					0	0	6.4e-05	0	0
TXNDC16	57544	broad.mit.edu	37	14	52957711	52957711	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:52957711C>T	uc001wzs.2	-	10	1218	c.769G>A	c.(769-771)GAA>AAA	p.E257K	TXNDC16_uc010tqu.1_Missense_Mutation_p.E252K|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	257					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					TGAGGATCTTCAGCAACTTCA	0.333000													9	12					0	0	0.000978159	0	0
SPTB	6710	broad.mit.edu	37	14	65262067	65262067	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:65262067C>T	uc001xht.2	-	11	1686	c.1632G>A	c.(1630-1632)ATG>ATA	p.M544I	SPTB_uc001xhr.2_Missense_Mutation_p.M544I|SPTB_uc001xhs.2_Missense_Mutation_p.M544I|SPTB_uc001xhu.2_Missense_Mutation_p.M544I	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	544	Spectrin 3.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGATCTCATCCATCCAGTCGA	0.632000													4	18					0	0	0.00116845	0	0
MAP3K9	4293	broad.mit.edu	37	14	71204984	71204985	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:71204984_71204985CC>TT	uc001xmm.2	-	8	1821_1822	c.1821_1822GG>AA	c.(1819-1824)AAGGAG>AAAAAG	p.E608K	MAP3K9_uc010ttk.1_Missense_Mutation_p.E345K|MAP3K9_uc001xmk.2_Missense_Mutation_p.E350K|MAP3K9_uc001xml.2_Missense_Mutation_p.E608K	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	608					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		GAGGCAAGCTCCTTCTGACCAA	0.510000													22	39					0	0	6.4e-05	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72205735	72205735	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:72205735G>A	uc001xms.2	+	22	5620	c.5272G>A	c.(5272-5274)GAA>AAA	p.E1758K	SIPA1L1_uc001xmt.2_Missense_Mutation_p.E1737K|SIPA1L1_uc001xmu.2_Missense_Mutation_p.E1736K|SIPA1L1_uc001xmv.2_Missense_Mutation_p.E1757K|SIPA1L1_uc010ttm.1_Missense_Mutation_p.E1211K|SIPA1L1_uc001xmw.2_Missense_Mutation_p.E523K	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1758	Potential.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TGCCTCCCAGGAAAAAGAAGA	0.527000													11	19					0	0	0.000978159	0	0
C14orf115	55237	broad.mit.edu	37	14	74824974	74824974	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:74824974G>A	uc001xpw.3	+	2	1679	c.1488G>A	c.(1486-1488)GAG>GAA	p.E496E		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	496					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		CCCCCGGGGAGCTCCTGCCAC	0.652000													16	23					0	0	0.00316338	0	0
NPC2	10577	broad.mit.edu	37	14	74951183	74951183	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:74951183G>A	uc001xpy.2	-	3	405	c.298C>T	c.(298-300)CCT>TCT	p.P100S	NPC2_uc010tus.1_Missense_Mutation_p.P100S	NM_006432	NP_006423	P61916	NPC2_HUMAN	epididymal secretory protein E1 precursor	100					cholesterol efflux|cholesterol homeostasis|glycolipid transport|intracellular cholesterol transport|phospholipid transport|regulation of isoprenoid metabolic process|response to virus	extracellular region|lysosome	cholesterol binding|enzyme binding				0				BRCA - Breast invasive adenocarcinoma(234;0.00149)		TTTTGGATAGGGCAGTTAATT	0.478000													23	43					0	0	0.00229938	0	0
ESRRB	2103	broad.mit.edu	37	14	76928933	76928933	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:76928933C>T	uc001xsq.1	+	3	510	c.443C>T	c.(442-444)ACC>ATC	p.T148I	ESRRB_uc001xsr.2_Missense_Mutation_p.T148I|ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	148						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		TGCGAGATCACCAAACGGAGG	0.622000													26	25					0	0	0.000720815	0	0
ANGEL1	23357	broad.mit.edu	37	14	77272779	77272779	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:77272779G>A	uc001xsv.2	-	5	1473	c.1360C>T	c.(1360-1362)CAT>TAT	p.H454Y	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	454										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		GGCATCCCATGGTACTGGAGC	0.537000													10	30					0	0	0.00136819	0	0
KIAA1737	85457	broad.mit.edu	37	14	77580243	77580243	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:77580243C>T	uc001xtd.2	+	4	961	c.782C>T	c.(781-783)TCC>TTC	p.S261F	KIAA1737_uc001xtc.1_Missense_Mutation_p.S163F	NM_033426	NP_219494	Q9C0C6	K1737_HUMAN	KIAA1737 protein	261											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0284)		ACCTTCGCTTCCCCCGCCAGT	0.567000													14	26					0	0	0.00244969	0	0
C14orf174	161394	broad.mit.edu	37	14	77846786	77846786	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:77846786C>T	uc001xtq.1	+	2	1750	c.1750C>T	c.(1750-1752)CTC>TTC	p.L584F		NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	584	SAM.										0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		CTGCTCAAACCTCCCTCAGAT	0.428000													13	13					0	0	0.00316338	0	0
STON2	85439	broad.mit.edu	37	14	81743686	81743687	+	Missense_Mutation	DNP	GG	AA	AA	rs143151987		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:81743686_81743687GG>AA	uc010tvu.1	-	4	2169_2170	c.1968_1969CC>TT	c.(1966-1971)TTCCAC>TTTTAC	p.H657Y	STON2_uc001xvk.1_Missense_Mutation_p.H657Y|STON2_uc010tvt.1_Missense_Mutation_p.H454Y	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	657	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CGTGAGTTGTGGAAAACATCCT	0.495000													6	22					0	0	6.4e-05	0	0
TTC7B	145567	broad.mit.edu	37	14	91124667	91124667	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:91124667G>A	uc001xyp.2	-	10	1339	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	406	TPR 4.						binding			ovary(2)	2		Melanoma(154;0.222)				AGCCATCAGGGACAGAGCAAA	0.448000													24	36					0	0	0.000720815	0	0
MIR329-2	574409	broad.mit.edu	37	14	101493473	101493473	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:101493473C>T	hsa-mir-329-2|MI0001726	+			c.37C>T			MIR494_hsa-mir-494|MI0003134_5'Flank|uc010txm.1_5'Flank|hsa-mir-1193|MI0014205_5'Flank																	0						GTTTCTGTTTCTTTATTGAGG	0.473000													32	44					0	0	0.00327116	0	0
EIF5	1983	broad.mit.edu	37	14	103805576	103805576	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:103805576A>G	uc001ymq.2	+	9	1334	c.812A>G	c.(811-813)GAT>GGT	p.D271G	EIF5_uc001ymr.2_Missense_Mutation_p.D271G|EIF5_uc001yms.2_Missense_Mutation_p.D271G|EIF5_uc001ymt.2_Missense_Mutation_p.D271G|EIF5_uc001ymu.2_Missense_Mutation_p.D271G	NM_001969	NP_001960	P55010	IF5_HUMAN	eukaryotic translation initiation factor 5	271	W2.				regulation of translational initiation|RNA metabolic process	cytosol	GTP binding|GTPase activity|translation initiation factor activity			pancreas(1)|breast(1)|skin(1)	3		Melanoma(154;0.155)	Epithelial(46;0.182)			GAAAGACTGGATGTAAAAGCC	0.378000													31	47					0	0	0.00127121	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419565	105419565	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:105419565C>T	uc010axc.1	-	7	2343	c.2223G>A	c.(2221-2223)GTG>GTA	p.V741V	AHNAK2_uc001ypx.2_Silent_p.V641V	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	741						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGGAAGTTTCACATCCACTT	0.627000													32	39					0	0	0.00283554	0	0
CRIP2	1397	broad.mit.edu	37	14	105944790	105944790	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:105944790G>C	uc001yrd.1	+	3	211	c.142G>C	c.(142-144)GAC>CAC	p.D48H	CRIP2_uc010tyr.1_Missense_Mutation_p.D122H|CRIP2_uc001yrc.2_RNA|CRIP2_uc001yre.1_Missense_Mutation_p.D48H|CRIP2_uc001yrf.1_RNA|CRIP2_uc001yrg.2_RNA|CRIP2_uc001yrh.1_5'Flank	NM_001312	NP_001303	P52943	CRIP2_HUMAN	cysteine-rich protein 2	48	LIM zinc-binding 1.						zinc ion binding				0		Melanoma(154;0.226)	OV - Ovarian serous cystadenocarcinoma(23;0.00897)|Epithelial(46;0.026)	Epithelial(152;0.235)		TGCGCAGCATGACGGGAAGCC	0.622000													3	6					0	0	6.4e-05	0	0
ADAM6	8755	broad.mit.edu	37	14	106579105	106579105	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:106579105C>T	uc010tyt.1	-	1333		c.28602G>A			uc001ysv.2_Intron					Parts of antibodies, mostly variable regions.												0						TGCAGGAGACCTTCACTGAGG	0.562000													15	34					0	0	0.00316338	0	0
ADAM6	8755	broad.mit.edu	37	14	106994098	106994098	+	RNA	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr14:106994098G>T	uc010tyt.1	-	187		c.8349C>A								Parts of antibodies, mostly variable regions.												0						GACTCCACCAGCTGCACCTCA	0.522000													15	30					2.4624e-09	8.08195e-09	0.00121646	1	0
GABRG3	2567	broad.mit.edu	37	15	27572117	27572117	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:27572117C>T	uc001zbg.1	+	4	598	c.432C>T	c.(430-432)ATC>ATT	p.I144I	GABRG3_uc001zbf.2_Silent_p.I144I	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	144	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CTCACTGGATCACCACACCCA	0.448000													27	19					0	0	0.000720815	0	0
SPINT1	6692	broad.mit.edu	37	15	41146000	41146000	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:41146000C>T	uc001zna.2	+	5	1038	c.834C>T	c.(832-834)TTC>TTT	p.F278F	SPINT1_uc001znb.2_Silent_p.F278F|SPINT1_uc001znc.2_Silent_p.F278F|SPINT1_uc010ucs.1_Silent_p.F278F	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	278	BPTI/Kunitz inhibitor 1.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GCAAGAGTTTCGTTTATGGAG	0.572000													47	86					0	0	0.00321405	0	0
ITPKA	3706	broad.mit.edu	37	15	41795237	41795237	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:41795237C>T	uc001znz.2	+	7	1270	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I		NM_002220	NP_002211	P23677	IP3KA_HUMAN	1D-myo-inositol-trisphosphate 3-kinase A	420					signal transduction		ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0		all_cancers(109;1.89e-19)|all_epithelial(112;2.28e-16)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.172)		OV - Ovarian serous cystadenocarcinoma(18;7.63e-17)|GBM - Glioblastoma multiforme(113;1.34e-06)|Colorectal(105;0.0148)|BRCA - Breast invasive adenocarcinoma(123;0.113)		TTCGGCAAGACCACGCCCCTC	0.672000													5	23					0	0	0.000602214	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138519	42138519	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:42138519C>T	uc010bco.2	+	17	1820	c.1719C>T	c.(1717-1719)TTC>TTT	p.F573F	JMJD7-PLA2G4B_uc001zoo.3_Silent_p.F804F|JMJD7-PLA2G4B_uc010bcn.2_Silent_p.F804F|JMJD7-PLA2G4B_uc001zoq.3_Silent_p.F274F|JMJD7-PLA2G4B_uc001zor.1_3'UTR	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	573	PLA2c.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						CACATAATTTCCTGCGTGGCC	0.517000													69	50					0	0	0.00361006	0	0
PLA2G4F	255189	broad.mit.edu	37	15	42442637	42442637	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:42442637C>T	uc001zoz.2	-	9	882	c.819G>A	c.(817-819)GAG>GAA	p.E273E	PLA2G4F_uc001zoy.2_5'Flank|PLA2G4F_uc010bcr.2_Silent_p.E24E|PLA2G4F_uc001zpa.2_Silent_p.E24E|PLA2G4F_uc010bcs.2_Silent_p.E60E	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	273					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		GGATGCCCCCCTCGCCCAGCT	0.617000													16	10					0	0	0.00188189	0	0
TTBK2	146057	broad.mit.edu	37	15	43045198	43045198	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:43045198T>C	uc001zqo.2	-	14	2685	c.2246A>G	c.(2245-2247)AAC>AGC	p.N749S	TTBK2_uc010bcy.2_Missense_Mutation_p.N680S	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	749					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TTGAGATTTGTTACTTTCTCT	0.428000													56	127					0	0	0.00361006	0	0
CASC4	113201	broad.mit.edu	37	15	44695287	44695287	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:44695287G>A	uc001zto.1	+	9	1574	c.1275G>A	c.(1273-1275)ATG>ATA	p.M425I	CASC4_uc001ztp.2_Intron|CASC4_uc001ztq.2_Intron	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	425	Lumenal (Potential).					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		CTATAACCATGAAACCCACCT	0.408000													6	20					0	0	0.00116845	0	0
DUOX2	50506	broad.mit.edu	37	15	45391942	45391942	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:45391942C>T	uc010bea.2	-	25	3536	c.3333G>A	c.(3331-3333)GAG>GAA	p.E1111E	DUOX2_uc001zun.2_Silent_p.E1111E	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1111	Interaction with TXNDC11 (By similarity).|Cytoplasmic (Potential).|Ferric oxidoreductase.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		TGAGGAAAGTCTCTCGCAGGA	0.567000													15	51					0	0	0.00316338	0	0
DMXL2	23312	broad.mit.edu	37	15	51792261	51792261	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:51792261T>G	uc002abf.2	-	18	3385	c.3160A>C	c.(3160-3162)ATG>CTG	p.M1054L	DMXL2_uc010ufy.1_Missense_Mutation_p.M1054L|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1054						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCATCATTCATCAAAGGCCAT	0.403000													10	32					0	0	0.000442599	0	0
GCNT3	9245	broad.mit.edu	37	15	59911631	59911631	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:59911631G>A	uc002age.2	+	3	1643	c.1194G>A	c.(1192-1194)TTG>TTA	p.L398L	GCNT3_uc002agd.2_Silent_p.L398L	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	398	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						CTGGGGACTTGAATTGGATGC	0.488000													34	118					0	0	0.00111076	0	0
TLN2	83660	broad.mit.edu	37	15	63047816	63047816	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:63047816C>T	uc002alb.3	+	34	4562	c.4562C>T	c.(4561-4563)CCA>CTA	p.P1521L	TLN2_uc002alc.3_5'UTR|TLN2_uc002ald.2_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1521					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						ACGGCCAACCCAGTAGCCAAG	0.577000													19	18					0	0	0.000958276	0	0
ZNF609	23060	broad.mit.edu	37	15	64915245	64915245	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:64915245G>A	uc002ann.2	+	2	967	c.967G>A	c.(967-969)GAA>AAA	p.E323K		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	323						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GCAGGAAACAGAAGATGGTAA	0.512000													10	43					0	0	0.000673444	0	0
PIF1	80119	broad.mit.edu	37	15	65112147	65112147	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:65112147G>A	uc002ant.2	-	8	1298	c.1232C>T	c.(1231-1233)GCT>GTT	p.A411V	PIF1_uc002anr.2_5'UTR|PIF1_uc002ans.2_Missense_Mutation_p.A102V|PIF1_uc010uiq.1_Missense_Mutation_p.A411V	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	411	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CTTGTGGGAAGCTGTGGCCTG	0.642000													15	69					0	0	0.000566183	0	0
NOX5	79400	broad.mit.edu	37	15	69320647	69320647	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:69320647C>T	uc002ars.1	+	3	287	c.267C>T	c.(265-267)CTC>CTT	p.L89L	NOX5_uc002arp.1_Silent_p.L71L|NOX5_uc002arq.1_Silent_p.L71L|NOX5_uc010bid.1_Silent_p.L82L|NOX5_uc002arr.1_Silent_p.L89L|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	89	Cytoplasmic (Potential).|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.|EF-hand 2.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TGACCCTGCTCATCCATGGCA	0.557000													54	44					0	0	0.00361006	0	0
NOX5	79400	broad.mit.edu	37	15	69329473	69329473	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:69329473C>T	uc002ars.1	+	8	1314	c.1294C>T	c.(1294-1296)CTG>TTG	p.L432L	NOX5_uc002arp.1_Silent_p.L414L|NOX5_uc002arq.1_Silent_p.L386L|NOX5_uc010bid.1_Silent_p.L397L|NOX5_uc002arr.1_Silent_p.L404L|NOX5_uc010bie.1_Silent_p.L232L|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	432	Ferric oxidoreductase.|Extracellular (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CTTGTTTTTCCTGGAGAAGGC	0.567000													25	64					0	0	0.00127121	0	0
GLCE	26035	broad.mit.edu	37	15	69560974	69560974	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:69560974C>T	uc002ary.1	+	5	1473	c.1245C>T	c.(1243-1245)AAC>AAT	p.N415N		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	415	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TAGTAAGGAACCAGGATGAGA	0.493000													26	76					0	0	0.000720815	0	0
TLE3	7090	broad.mit.edu	37	15	70358439	70358439	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:70358439G>A	uc002asm.2	-	7	1610	c.491C>T	c.(490-492)TCC>TTC	p.S164F	TLE3_uc002ask.2_Missense_Mutation_p.S108F|TLE3_uc002asl.2_Missense_Mutation_p.S169F|TLE3_uc010ukd.1_Missense_Mutation_p.S157F|TLE3_uc010bik.1_Intron|TLE3_uc010bil.1_Missense_Mutation_p.S164F|TLE3_uc002asn.2_Missense_Mutation_p.S164F|TLE3_uc002asp.2_Missense_Mutation_p.S164F|TLE3_uc002aso.2_Missense_Mutation_p.S164F|TLE3_uc010bim.1_RNA	NM_005078	NP_005069	Q04726	TLE3_HUMAN	transducin-like enhancer protein 3 isoform a	164	Gly/Pro-rich.				organ morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|protein binding			lung(2)	2						CAGCAGCCCGGAGCTGCTCCC	0.667000													34	19					0	0	0.00148497	0	0
ARID3B	10620	broad.mit.edu	37	15	74865202	74865202	+	Splice_Site	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:74865202G>A	uc002aye.2	+	3	754	c.553_splice	c.e3-1	p.N185_splice	ARID3B_uc002ayc.2_Splice_Site_p.N185_splice|ARID3B_uc002ayd.2_Splice_Site_p.N185_splice	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						TTCCCTTTTAGAATGGTGGTT	0.458000													7	33					0	0	0.00307968	0	0
CYP1A2	1544	broad.mit.edu	37	15	75042580	75042580	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:75042580G>A	uc002ayr.1	+	2	565	c.501G>A	c.(499-501)AAG>AAA	p.K167K		NM_000761	NP_000752	P05177	CP1A2_HUMAN	cytochrome P450, family 1, subfamily A,	167					alkaloid metabolic process|exogenous drug catabolic process|methylation|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative deethylation|oxidative demethylation|steroid catabolic process|toxin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|demethylase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding			ovary(3)|breast(1)	4					Acenocoumarol(DB01418)|Acetaminophen(DB00316)|Aciclovir(DB00787)|Alosetron(DB00969)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Anagrelide(DB00261)|Azelastine(DB00972)|Bortezomib(DB00188)|Caffeine(DB00201)|Carmustine(DB00262)|Chlordiazepoxide(DB00475)|Chlorpromazine(DB00477)|Chlorzoxazone(DB00356)|Cimetidine(DB00501)|Cinacalcet(DB01012)|Ciprofloxacin(DB00537)|Clomipramine(DB01242)|Clotrimazole(DB00257)|Clozapine(DB00363)|Conjugated Estrogens(DB00286)|Cyclobenzaprine(DB00924)|Dacarbazine(DB00851)|Desloratadine(DB00967)|Diazepam(DB00829)|Dibucaine(DB00527)|Diclofenac(DB00586)|Duloxetine(DB00476)|Enoxacin(DB00467)|Esomeprazole(DB00736)|Estradiol(DB00783)|Estrone(DB00655)|Fluorouracil(DB00544)|Flutamide(DB00499)|Fluvoxamine(DB00176)|Frovatriptan(DB00998)|Grepafloxacin(DB00365)|Haloperidol(DB00502)|Hesperetin(DB01094)|Imipramine(DB00458)|Ketoconazole(DB01026)|Leflunomide(DB01097)|Levobupivacaine(DB01002)|Levofloxacin(DB01137)|Lidocaine(DB00281)|Lomefloxacin(DB00978)|Melatonin(DB01065)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mirtazapine(DB00370)|Norfloxacin(DB01059)|Nortriptyline(DB00540)|Ofloxacin(DB01165)|Olanzapine(DB00334)|Ondansetron(DB00904)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Pefloxacin(DB00487)|Pimozide(DB01100)|Propafenone(DB01182)|Propranolol(DB00571)|Quinidine(DB00908)|Ramelteon(DB00980)|Ranitidine(DB00863)|Rasagiline(DB01367)|Rifampin(DB01045)|Riluzole(DB00740)|Rofecoxib(DB00533)|Ropinirole(DB00268)|Ropivacaine(DB00296)|Tacrine(DB00382)|Telithromycin(DB00976)|Terfenadine(DB00342)|Theophylline(DB00277)|Thiabendazole(DB00730)|Tizanidine(DB00697)|Tolbutamide(DB01124)|Verapamil(DB00661)|Warfarin(DB00682)|Zileuton(DB00744)|Zolmitriptan(DB00315)	ATGTGAGCAAGGAGGCTAAGG	0.612000													61	45					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	15	76074702	76074702	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:76074702G>C	uc010umm.1	+	9	774	c.697G>C	c.(697-699)GAG>CAG	p.E233Q	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CCGGTGGCAGGAGAGGATGTG	0.388000													4	45					0	0	0.00116845	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79082136	79082136	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:79082136C>T	uc002bej.3	-	7	1284	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	ADAMTS7_uc010und.1_Missense_Mutation_p.G358E|ADAMTS7_uc002bek.1_Missense_Mutation_p.G358E	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	358	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						ATGGGACAGTCCCAGGGTCTC	0.652000													9	5					0	0	0.000673444	0	0
BNC1	646	broad.mit.edu	37	15	83932427	83932427	+	Missense_Mutation	SNP	C	T	T	rs149687703		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:83932427C>T	uc002bjt.1	-	4	1664	c.1576G>A	c.(1576-1578)GAA>AAA	p.E526K	BNC1_uc010uos.1_Missense_Mutation_p.E514K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	526					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AATGGCATTTCGTTTGAAATG	0.488000													40	28					0	0	0.00148497	0	0
Unknown	0	broad.mit.edu	37	15	84909434	84909434	+	RNA	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:84909434G>A	uc010bmy.1	+	1		c.61G>A								Homo sapiens golgi autoantigen, golgin subfamily a, 9 pseudogene, mRNA (cDNA clone IMAGE:40024530).																		GAGAGGCTGCGGGAGCTGGAG	0.667000													3	9					0	0	0.00198382	0	0
PDE8A	5151	broad.mit.edu	37	15	85660972	85660972	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:85660972G>A	uc002blh.2	+	17	1825	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	PDE8A_uc002bli.2_Missense_Mutation_p.E500K|PDE8A_uc010bnc.2_Missense_Mutation_p.E299K|PDE8A_uc010bnd.2_Missense_Mutation_p.E299K|PDE8A_uc002blj.2_Missense_Mutation_p.E166K|PDE8A_uc002blk.2_Missense_Mutation_p.E166K|PDE8A_uc002bll.2_5'Flank	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	546	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			ACAAATTATCGAAGCCAATTA	0.413000													57	150					0	0	0.00361006	0	0
WDR93	56964	broad.mit.edu	37	15	90280958	90280958	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:90280958G>C	uc002boj.2	+	15	1864	c.1763G>C	c.(1762-1764)CGA>CCA	p.R588P	WDR93_uc010bnr.2_Missense_Mutation_p.R560P|WDR93_uc010upz.1_Missense_Mutation_p.R305P	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	588					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TTCCTGCTCCGAGGTACAGAA	0.562000													18	14					0	0	0.000566183	0	0
RGMA	56963	broad.mit.edu	37	15	93595475	93595475	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:93595475C>T	uc002bss.1	-	3	665	c.393G>A	c.(391-393)CCG>CCA	p.P131P	RGMA_uc002bsq.1_Silent_p.P115P|RGMA_uc010boi.1_Silent_p.P22P|RGMA_uc002bsr.1_Silent_p.P22P|RGMA_uc010urc.1_Silent_p.P139P	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	131					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			TGTCTCCGGCCGGTGGGAGCG	0.647000													29	31					0	0	0.00375469	0	0
Unknown	0	broad.mit.edu	37	15	102291841	102291841	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr15:102291841C>T	uc010usj.1	+	3	208	c.149C>T	c.(148-150)TCC>TTC	p.S50F	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CTGGTGGACTCCTACATGGCC	0.547000													12	26					0	0	0.00316338	0	0
RHBDF1	64285	broad.mit.edu	37	16	108679	108679	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:108679C>T	uc002cfl.3	-	21	2376	c.2228G>A	c.(2227-2229)CGG>CAG	p.R743Q		NM_022450	NP_071895	Q96CC6	RHDF1_HUMAN	rhomboid family 1	743	Cytoplasmic (Potential).				cell migration|cell proliferation|negative regulation of protein secretion|protein transport|proteolysis|regulation of epidermal growth factor receptor signaling pathway|regulation of proteasomal protein catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity			ovary(1)|pancreas(1)	2		all_cancers(16;2.56e-05)|all_epithelial(16;0.000116)|Hepatocellular(780;0.0068)|Lung NSC(18;0.0795)|all_lung(18;0.159)				ACGCCAGGGCCGCGCCAGGAT	0.622000													12	29					0	0	0.000978159	0	0
SOX8	30812	broad.mit.edu	37	16	1033854	1033854	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:1033854C>A	uc002ckn.2	+	2	664	c.549C>A	c.(547-549)CAC>CAA	p.H183Q	LMF1_uc002ckk.2_5'Flank|uc002ckm.1_5'Flank	NM_014587	NP_055402	P57073	SOX8_HUMAN	SRY (sex determining region Y)-box 8	183					adipose tissue development|enteric nervous system development|fat cell differentiation|in utero embryonic development|metanephric nephron tubule formation|morphogenesis of a branching epithelium|negative regulation of apoptosis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|neural crest cell migration|oligodendrocyte differentiation|osteoblast differentiation|peripheral nervous system development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of gliogenesis|positive regulation of osteoblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone levels|renal vesicle induction|retinal rod cell differentiation|Sertoli cell development|signal transduction|spermatogenesis|ureter morphogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2		Hepatocellular(780;0.00308)				AAGCCGGCCACAGCGACTCCG	0.677000													14	6					4.36969e-10	1.43599e-09	0.00185496	1	0
IFT140	9742	broad.mit.edu	37	16	1630847	1630848	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:1630847_1630848GG>AA	uc002cmb.2	-	13	1798_1799	c.1436_1437CC>TT	c.(1435-1437)ACC>ATT	p.T479I	IFT140_uc002clz.2_Missense_Mutation_p.T130I	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	479										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				CACACAAGAAGGTCCCTAAAAT	0.406000													9	19					0	0	6.4e-05	0	0
SRRM2	23524	broad.mit.edu	37	16	2812281	2812281	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:2812281C>T	uc002crk.2	+	11	2301	c.1752C>T	c.(1750-1752)TCC>TCT	p.S584S	SRRM2_uc002crj.1_Silent_p.S488S|SRRM2_uc002crl.1_Silent_p.S584S|SRRM2_uc010bsu.1_Silent_p.S488S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	584	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGGGCAGGTCCCGCTCTAGAA	0.627000													8	13					0	0	0.00307968	0	0
SRRM2	23524	broad.mit.edu	37	16	2815758	2815759	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:2815758_2815759CC>TT	uc002crk.2	+	11	5778_5779	c.5229_5230CC>TT	c.(5227-5232)CGCCGA>CGTTGA	p.R1744*	SRRM2_uc002crj.1_Nonsense_Mutation_p.R1648*|SRRM2_uc002crl.1_Nonsense_Mutation_p.R1744*|SRRM2_uc010bsu.1_Nonsense_Mutation_p.R1648*	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1744	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GGTCTTCACGCCGACGGCGCTC	0.604000													11	33					0	0	6.4e-05	0	0
NLRC3	197358	broad.mit.edu	37	16	3604305	3604305	+	Silent	SNP	C	T	T	rs141569334	by1000genomes	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:3604305C>T	uc010btn.2	-	9	2616	c.2205G>A	c.(2203-2205)AGG>AGA	p.R735R	NLRC3_uc010bto.1_5'UTR	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	735	LRR 5.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CACCATCATCCCTAACGGTGT	0.592000													21	22					0	0	0.000720815	0	0
A2BP1	54715	broad.mit.edu	37	16	7568259	7568259	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:7568259C>T	uc002cys.2	+	5	1126	c.138C>T	c.(136-138)CCC>CCT	p.P46P	A2BP1_uc010buf.1_Silent_p.P46P|A2BP1_uc002cyr.1_Silent_p.P46P|A2BP1_uc002cyt.2_Silent_p.P46P|A2BP1_uc010uxz.1_Silent_p.P89P|A2BP1_uc010uya.1_Silent_p.P82P|A2BP1_uc002cyv.1_Silent_p.P46P|A2BP1_uc010uyb.1_Silent_p.P46P|A2BP1_uc002cyw.2_Silent_p.P66P|A2BP1_uc002cyy.2_Silent_p.P66P|A2BP1_uc002cyx.2_Silent_p.P66P|A2BP1_uc010uyc.1_Silent_p.P66P	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	46					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CCCCTCATCCCCACCCCGCGC	0.652000													25	72					0	0	0.00127121	0	0
C16orf68	79091	broad.mit.edu	37	16	8729078	8729078	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:8729078C>T	uc002cyz.2	+	5	885	c.609C>T	c.(607-609)CTC>CTT	p.L203L	C16orf68_uc002cza.2_Silent_p.L147L	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	203							methyltransferase activity				0						GACAGGACCTCTTCCGAGGAT	0.627000													37	25					0	0	0.00111076	0	0
ABCC6	368	broad.mit.edu	37	16	16276311	16276311	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:16276311C>T	uc002den.3	-	17	2242	c.2205G>A	c.(2203-2205)GTG>GTA	p.V735V	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	735	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGAAGCTGTCCACATCTGGCT	0.557000													26	19					0	0	0.001512	0	0
PDILT	204474	broad.mit.edu	37	16	20373858	20373858	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:20373858C>T	uc002dhc.1	-	10	1507	c.1284G>A	c.(1282-1284)GAG>GAA	p.E428E		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	428	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TGCCCAATTCCTCCAACAGTG	0.463000													33	19					0	0	0.00428921	0	0
OTOA	146183	broad.mit.edu	37	16	21771827	21771827	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:21771827C>T	uc002djh.2	+	28	3387	c.3386C>T	c.(3385-3387)CCC>CTC	p.P1129L	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.P1050L|OTOA_uc002dji.2_Missense_Mutation_p.P805L|OTOA_uc010vbk.1_Missense_Mutation_p.P777L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	1143					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		CTTGGTTGTCCCCTGCTGGTT	0.517000													12	76					0	0	0.00188189	0	0
RBBP6	5930	broad.mit.edu	37	16	24566945	24566945	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:24566945C>T	uc002dmh.2	+	5	1398	c.358C>T	c.(358-360)CTG>TTG	p.L120L	RBBP6_uc010vcb.1_5'UTR|RBBP6_uc002dmi.2_Silent_p.L120L|RBBP6_uc010bxr.2_Silent_p.L120L|RBBP6_uc002dmk.2_5'UTR	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	120					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GACTGCCAATCTGGCTGAAGC	0.373000													52	52					0	0	0.00361006	0	0
APOB48R	55911	broad.mit.edu	37	16	28509265	28509265	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:28509265C>T	uc002dqb.1	+	3	2886	c.2876C>T	c.(2875-2877)ACG>ATG	p.T959M	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.T497M	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	959	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GAAGCCGAGACGGCTGAGGCC	0.652000													7	24					0	0	0.00198382	0	0
NFATC2IP	84901	broad.mit.edu	37	16	28966005	28966005	+	Splice_Site	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:28966005T>G	uc002dru.2	+	3	593	c.578_splice	c.e3+2	p.L193_splice	uc010vct.1_Intron|NFATC2IP_uc002drt.2_Intron	NM_032815	NP_116204	Q8NCF5	NF2IP_HUMAN	nuclear factor of activated T-cells,							cytoplasm|nucleus				ovary(1)	1						AGAGTTTCTGTGAGTGAGGCC	0.547000													33	13					0	0	0.000953801	0	0
KIF22	3835	broad.mit.edu	37	16	29810978	29810978	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:29810978C>T	uc002dts.3	+	7	1044	c.1020C>T	c.(1018-1020)ATC>ATT	p.I340I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Silent_p.I272I|KIF22_uc010vdw.1_Silent_p.I272I|KIF22_uc010bzf.2_Silent_p.I272I	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	340					blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						CCCACAGTATCCTTATTGCCA	0.557000													19	9					0	0	0.00152264	0	0
MYST1	84148	broad.mit.edu	37	16	31141809	31141809	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:31141809G>A	uc002eay.2	+	9	1057	c.1039G>A	c.(1039-1041)GGC>AGC	p.G347S	MYST1_uc002eax.2_Missense_Mutation_p.G347S|MYST1_uc002eaz.2_Missense_Mutation_p.G189S|MYST1_uc002eba.2_Missense_Mutation_p.G131S|MYST1_uc002ebb.2_RNA	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	347					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						GAGCACAGTCGGCTCCCCGGA	0.622000													19	12					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	16	32077597	32077597	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:32077597C>T	uc010vfu.1	+	1		c.39C>T								Homo sapiens mRNA for immunoglobulin heavy chain, VHDJH rearrangement : VHLI26.																		TTCACCATCTCCAGGGACAAC	0.512000													104	300					0	0	0.00361006	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512000													3	17					0	0	6.4e-05	0	0
ABCC12	94160	broad.mit.edu	37	16	48117931	48117931	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:48117931C>T	uc002efc.1	-	28	4228	c.3882G>A	c.(3880-3882)CTG>CTA	p.L1294L	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1294	ABC transporter 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TGTTCTGAACCAGGGTGTCAG	0.527000													23	76					0	0	0.00332997	0	0
IRX5	10265	broad.mit.edu	37	16	54967445	54967445	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:54967445T>C	uc002ehv.2	+	3	1112	c.1112T>C	c.(1111-1113)CTA>CCA	p.L371P	IRX5_uc002ehw.2_Missense_Mutation_p.L305P	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	371					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						GGGCAAGCCCTAGGAGGCAGC	0.716000													6	16					0	0	0.00198382	0	0
FAM192A	80011	broad.mit.edu	37	16	57188231	57188231	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:57188231G>A	uc010vhk.1	-	7	995	c.736C>T	c.(736-738)CGA>TGA	p.R246*	FAM192A_uc002ekz.3_Nonsense_Mutation_p.R245*|FAM192A_uc002ekv.3_Nonsense_Mutation_p.R168*|FAM192A_uc002ekw.3_Nonsense_Mutation_p.R245*|FAM192A_uc002ekx.3_Nonsense_Mutation_p.R245*|FAM192A_uc002eky.3_Nonsense_Mutation_p.R245*	NM_024946	NP_079222	Q9GZU8	F192A_HUMAN	NEFA-interacting nuclear protein NIP30	246						nucleus					0						GTGTTGGTTCGGAAGATGGAG	0.587000													12	35					0	0	0.00316338	0	0
RSPRY1	89970	broad.mit.edu	37	16	57250944	57250944	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:57250944C>T	uc002elb.2	+	8	1176	c.898C>T	c.(898-900)CTC>TTC	p.L300F	RSPRY1_uc002elc.2_Missense_Mutation_p.L300F|RSPRY1_uc002eld.2_Missense_Mutation_p.L300F	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	300	B30.2/SPRY.					extracellular region	zinc ion binding			ovary(1)	1						CTTAGACAATCTCTGTAAGTG	0.428000													56	50					0	0	0.00361006	0	0
PLEKHG4	25894	broad.mit.edu	37	16	67314157	67314157	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:67314157C>T	uc002eso.3	+	1	2745	c.210C>T	c.(208-210)TTC>TTT	p.F70F	PLEKHG4_uc002esp.3_5'UTR|PLEKHG4_uc002esq.3_Silent_p.F70F|PLEKHG4_uc002esr.1_Intron|PLEKHG4_uc010cef.2_Silent_p.F70F|PLEKHG4_uc002ess.3_Silent_p.F70F|PLEKHG4_uc010ceg.2_Silent_p.F70F	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	70					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		CCAGGAAATTCCAGTTACCCC	0.617000													17	14					0	0	0.00074312	0	0
ACD	65057	broad.mit.edu	37	16	67694201	67694201	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:67694201G>A	uc002etq.3	-	1	518	c.181C>T	c.(181-183)CCT>TCT	p.P61S	ACD_uc002etp.3_Missense_Mutation_p.P61S|ACD_uc002etr.3_Missense_Mutation_p.P61S|ACD_uc010vjt.1_Missense_Mutation_p.P51S|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	61					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CTCGGAAGAGGAAGCTCCTTC	0.736000													7	15					0	0	0.000274275	0	0
AARS	16	broad.mit.edu	37	16	70291981	70291981	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:70291981G>A	uc002eyn.1	-	15	2242	c.2132C>T	c.(2131-2133)TCT>TTT	p.S711F	AARS_uc010vlu.1_Missense_Mutation_p.S541F	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	711					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	AGCAGGCCCAGAGGGGTCATC	0.587000													6	7					0	0	0.00307968	0	0
HYDIN	54768	broad.mit.edu	37	16	70972659	70972659	+	Splice_Site	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:70972659C>T	uc002ezr.2	-	44	6979	c.6851_splice	c.e44-1	p.E2284_splice		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a											ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGCTTGCGTTCTGTGAGGGGA	0.522000													5	26					0	0	0.00116845	0	0
PKD1L2	114780	broad.mit.edu	37	16	81208372	81208372	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:81208372C>T	uc002fgh.1	-	16	2731	c.2731G>A	c.(2731-2733)GAA>AAA	p.E911K	PKD1L2_uc002fgg.1_RNA|PKD1L2_uc002fgi.2_Missense_Mutation_p.E226K|PKD1L2_uc002fgj.2_Missense_Mutation_p.E911K|PKD1L2_uc002fgk.1_Missense_Mutation_p.E53K|PKD1L2_uc002fgl.1_Missense_Mutation_p.E167K	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	911	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCCTGGCTTTCATGCTCTTGG	0.607000													4	12					0	0	0.00116845	0	0
ADAD2	161931	broad.mit.edu	37	16	84228155	84228155	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:84228155C>T	uc002fhr.2	+	2	640	c.526C>T	c.(526-528)CTC>TTC	p.L176F	ADAD2_uc002fhq.2_Missense_Mutation_p.L248F|uc002fhs.1_Missense_Mutation_p.G70R	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	176	DRBM.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						GCTCTCTGCCCTCTGCTACAT	0.647000													5	12					0	0	0.000602214	0	0
KCNG4	93107	broad.mit.edu	37	16	84271081	84271081	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:84271081G>A	uc010voc.1	-	2	132	c.11C>T	c.(10-12)CCT>CTT	p.P4L	KCNG4_uc002fhu.1_Missense_Mutation_p.P4L	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	4	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GTCTCTGGAAGGCATGGGCAT	0.572000													11	34					0	0	0.00136819	0	0
ATP2C2	9914	broad.mit.edu	37	16	84488460	84488460	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:84488460G>A	uc002fhx.2	+	21	2106	c.2017G>A	c.(2017-2019)GGG>AGG	p.G673R	ATP2C2_uc010chj.2_Missense_Mutation_p.G673R|ATP2C2_uc002fhy.2_Missense_Mutation_p.G690R|ATP2C2_uc002fhz.2_Missense_Mutation_p.G522R	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	673	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GGCCATGACTGGGGATGGGGT	0.622000													28	20					0	0	0.00327116	0	0
JPH3	57338	broad.mit.edu	37	16	87678092	87678092	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:87678092C>T	uc002fkd.2	+	2	865	c.611C>T	c.(610-612)TCC>TTC	p.S204F	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	204	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CACAGTGACTCCGAGATCCTC	0.682000													25	27					0	0	0.00106085	0	0
ZNF276	92822	broad.mit.edu	37	16	89789687	89789688	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr16:89789687_89789688CC>TT	uc002fos.3	+	4	673_674	c.576_577CC>TT	c.(574-579)AGCCCC>AGTTCC	p.P193S	C16orf7_uc002fom.1_5'Flank|ZNF276_uc010ciq.2_5'UTR|ZNF276_uc002fop.2_Missense_Mutation_p.A111V|ZNF276_uc002foq.3_Missense_Mutation_p.P118S|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_5'UTR|ZNF276_uc010cis.2_5'UTR|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_Missense_Mutation_p.P31S|ZNF276_uc010cit.1_5'UTR	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TCACATCCAGCCCCCAGTGCCT	0.653000													18	16					0	0	6.4e-05	0	0
ATP2A3	489	broad.mit.edu	37	17	3844304	3844304	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:3844304G>A	uc002fxb.1	-	14	2212	c.2061C>T	c.(2059-2061)ATC>ATT	p.I687I	ATP2A3_uc002fwx.1_Silent_p.I687I|ATP2A3_uc002fwy.1_Silent_p.I687I|ATP2A3_uc002fwz.1_Silent_p.I687I|ATP2A3_uc002fxa.1_Silent_p.I687I|ATP2A3_uc002fxc.1_Silent_p.I687I|ATP2A3_uc002fxd.1_Silent_p.I687I	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	687	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GGTTCTCCACGATGCGGGACT	0.667000													12	66					0	0	0.00244969	0	0
USP6	9098	broad.mit.edu	37	17	5045413	5045413	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:5045413G>A	uc002gau.1	+	24	3919	c.1689G>A	c.(1687-1689)GGG>GGA	p.G563G	USP6_uc002gav.1_Silent_p.G563G|USP6_uc010ckz.1_Silent_p.G246G	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	563					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TTATCTCAGGGAGACATCTTT	0.418000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								30	64					0	0	0.0024448	0	0
CLEC10A	10462	broad.mit.edu	37	17	6978516	6978516	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:6978516C>T	uc002gek.2	-	9	1111	c.808G>A	c.(808-810)GAC>AAC	p.D270N	CLEC10A_uc002gej.2_Missense_Mutation_p.D246N|CLEC10A_uc002gel.2_Missense_Mutation_p.D243N|CLEC10A_uc010clv.1_3'UTR	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	270	C-type lectin.|Extracellular (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						CCCTGCCAGTCGTCTGGCTGG	0.597000													18	25					0	0	0.00121646	0	0
DLG4	1742	broad.mit.edu	37	17	7107068	7107068	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:7107068G>A	uc002get.3	-	7	1608	c.407C>T	c.(406-408)TCC>TTC	p.S136F	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.S33F|DLG4_uc010cly.2_Missense_Mutation_p.S90F|DLG4_uc010vto.1_Missense_Mutation_p.S133F|DLG4_uc002geu.2_Missense_Mutation_p.S90F	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	93	PDZ 1.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						GATGAAAATGGATGGGTCGTC	0.607000													27	23					0	0	0.000720815	0	0
WRAP53	55135	broad.mit.edu	37	17	7606160	7606160	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:7606160G>A	uc010vuh.1	+	9	1419	c.1264G>A	c.(1264-1266)GAC>AAC	p.D422N	WRAP53_uc010vui.1_Missense_Mutation_p.D422N|WRAP53_uc002gip.2_Missense_Mutation_p.D422N|WRAP53_uc002gir.2_Missense_Mutation_p.D422N|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.D389N|EFNB3_uc002gis.2_5'Flank	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	422	WD 6.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						CTTCGATCTGGACCCGTGAGT	0.602000													10	24					0	0	0.000442599	0	0
DNAH2	146754	broad.mit.edu	37	17	7671273	7671273	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:7671273G>A	uc002giu.1	+	22	3745	c.3731G>A	c.(3730-3732)TGG>TAG	p.W1244*		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1244	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GAGGAGAACTGGAATGAGTGG	0.577000													14	16					0	0	0.00244969	0	0
CNTROB	116840	broad.mit.edu	37	17	7850948	7850949	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:7850948_7850949CC>TT	uc002gjq.2	+	15	2972_2973	c.2053_2054CC>TT	c.(2053-2055)CCT>TTT	p.P685F	CNTROB_uc002gjp.2_Missense_Mutation_p.P685F|CNTROB_uc002gjr.2_Missense_Mutation_p.P587F	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	685	Pro-rich.|Required for centrosome localization.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				AAGGCCATTCCCTGAGGAAGAT	0.559000													29	73					0	0	6.4e-05	0	0
ALOX15B	247	broad.mit.edu	37	17	7943218	7943218	+	Splice_Site	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:7943218A>T	uc002gju.2	+	3	484	c.368_splice	c.e3-2	p.A123_splice	ALOX15B_uc002gjv.2_Splice_Site_p.A123_splice|ALOX15B_uc002gjw.2_Splice_Site_p.A123_splice|ALOX15B_uc010vun.1_Splice_Site_p.A123_splice|ALOX15B_uc010cnp.2_Splice_Site	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type						induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CTTCTCCCACAGCCAAGGTGT	0.617000													32	30					0	0	0.00128727	0	0
MYH4	4622	broad.mit.edu	37	17	10348605	10348605	+	Silent	SNP	G	A	A	rs149221663		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:10348605G>A	uc002gmn.2	-	36	5355	c.5244C>T	c.(5242-5244)ATC>ATT	p.I1748I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1748	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTCCTGGACGATGTCCTCCA	0.468000													30	104					0	0	0.00209593	0	0
MYH1	4619	broad.mit.edu	37	17	10404786	10404786	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:10404786C>T	uc002gmo.2	-	27	3473	c.3379G>A	c.(3379-3381)GAG>AAG	p.E1127K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1127	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CGCTCTGCCTCGATTTCCTCC	0.542000													32	19					0	0	0.0024448	0	0
ZNF287	57336	broad.mit.edu	37	17	16456253	16456253	+	Silent	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:16456253A>G	uc002gqi.2	-	6	1656	c.1203T>C	c.(1201-1203)TGT>TGC	p.C401C		NM_020653	NP_065704	Q9HBT7	ZN287_HUMAN	zinc finger protein 287	394	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		ACTCTTTCCCACATTCTTCAC	0.418000													26	93					0	0	0.00178596	0	0
SLC47A1	55244	broad.mit.edu	37	17	19459367	19459367	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:19459367G>A	uc002gvy.1	+	10	999	c.913G>A	c.(913-915)GTG>ATG	p.V305M	SLC47A1_uc010vyy.1_RNA|SLC47A1_uc002gvx.2_Missense_Mutation_p.V305M|SLC47A1_uc010vyz.1_Missense_Mutation_p.V282M|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Missense_Mutation_p.V110M|SLC47A1_uc010vza.1_Missense_Mutation_p.V17M|SLC47A1_uc010vzb.1_Missense_Mutation_p.V39M|SLC47A1_uc010vzc.1_Translation_Start_Site|SNORA59B_uc002gvz.1_5'Flank	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	305	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					GGCCATCATTGTGTACATGGT	0.547000													7	33					0	0	0.000442599	0	0
Unknown	0	broad.mit.edu	37	17	20406445	20406445	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:20406445C>T	uc002gxb.2	-	3		c.777G>A								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		CTTCCATCTCCATCTCCAGGT	0.642000													15	9					0	0	0.000566183	0	0
NLK	51701	broad.mit.edu	37	17	26488234	26488234	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:26488234C>T	uc010crj.2	+	4	905	c.693C>T	c.(691-693)GTC>GTT	p.V231V	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	231	Protein kinase.				intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		AAATTATCGTCTCTCCTCAAC	0.393000													28	28					0	0	0.00178596	0	0
FLJ40504	284085	broad.mit.edu	37	17	26604334	26604334	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:26604334G>A	uc002has.3	-	3	237	c.141C>T	c.(139-141)CTC>CTT	p.L47L		NM_173624	NP_775895			SubName: Full=Putative uncharacterized protein FLJ40504; SubName: Full=cDNA FLJ40504 fis, clone TESTI2045509, highly similar to KERATIN, TYPE I CYTOSKELETAL 18;												0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		GTAGTTGGTGGAGAGGGTGGA	0.557000													27	22					0	0	0.000878237	0	0
SLC13A2	9058	broad.mit.edu	37	17	26822813	26822813	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:26822813C>T	uc002hbh.2	+	10	1516	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	SLC13A2_uc010wam.1_Silent_p.F439F|SLC13A2_uc010wan.1_Silent_p.F532F|SLC13A2_uc010wao.1_Silent_p.F440F|SLC13A2_uc002hbi.2_Silent_p.F412F	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	483	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CTACGATCTTCCTGCCCATCC	0.632000													14	59					0	0	0.00400662	0	0
AMAC1	146861	broad.mit.edu	37	17	33520498	33520498	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:33520498C>T	uc002hjd.2	-	1	915	c.829G>A	c.(829-831)GCC>ACC	p.A277T		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	277	DUF6 2.					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		GCAGGGTGGGCCTTGGTGACC	0.577000													32	104					0	0	0.00283554	0	0
KRT34	3885	broad.mit.edu	37	17	39537404	39537404	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:39537404C>T	uc002hwm.2	-	3	630	c.618G>A	c.(616-618)AGG>AGA	p.R206R		NM_021013	NP_066293	O76011	KRT34_HUMAN	keratin 34	206	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity			central_nervous_system(1)	1		Breast(137;0.000496)				CATCCAGGATCCTGCGTATGC	0.552000													32	34					0	0	0.0024448	0	0
EZH1	2145	broad.mit.edu	37	17	40870572	40870572	+	Silent	SNP	G	A	A	rs144940655		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:40870572G>A	uc002iaz.2	-	9	976	c.831C>T	c.(829-831)ATC>ATT	p.I277I	EZH1_uc002iba.2_Silent_p.I268I|EZH1_uc010wgt.1_Silent_p.I207I|EZH1_uc010wgu.1_Silent_p.I283I|EZH1_uc010wgv.1_Silent_p.I237I|EZH1_uc010wgw.1_Silent_p.I138I|EZH1_uc010cyp.2_Silent_p.I178I|EZH1_uc010cyq.2_Silent_p.I194I|EZH1_uc010cys.2_Silent_p.I228I|EZH1_uc010cyo.1_Intron|EZH1_uc010cyr.1_Intron	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	277					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		TGGGGCCATCGATGTTGGGTG	0.502000													16	33					0	0	0.000958276	0	0
GRN	2896	broad.mit.edu	37	17	42426541	42426541	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:42426541C>T	uc002igp.1	+	2	228	c.9C>T	c.(7-9)ACC>ACT	p.T3T	GRN_uc002igq.1_Silent_p.T3T|GRN_uc002igr.1_5'Flank	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	3					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		CCATGTGGACCCTGGTGAGCT	0.622000													28	35					0	0	0.00327116	0	0
GPATCH8	23131	broad.mit.edu	37	17	42475476	42475476	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:42475476G>A	uc002igw.1	-	8	4033	c.3969C>T	c.(3967-3969)CTC>CTT	p.L1323L	GPATCH8_uc002igv.1_Silent_p.L1245L|GPATCH8_uc010wiz.1_Silent_p.L1245L	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1323						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		CAGCCTGCTGGAGCTTGCTGT	0.597000													29	24					0	0	0.000878237	0	0
DBF4B	80174	broad.mit.edu	37	17	42828218	42828218	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:42828218C>T	uc002ihf.2	+	14	1658	c.1445C>T	c.(1444-1446)TCC>TTC	p.S482F	DBF4B_uc010wjc.1_Intron	NM_145663	NP_663696	Q8NFT6	DBF4B_HUMAN	DBF4 homolog B isoform 1	482					cell cycle	nucleus	nucleic acid binding|zinc ion binding				0		Prostate(33;0.0322)				CAAGAAAACTCCTTTGCCCCG	0.587000													32	30					0	0	0.00327116	0	0
GJC1	10052	broad.mit.edu	37	17	42882944	42882944	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:42882944A>C	uc002ihj.2	-	2	753	c.242T>G	c.(241-243)ATC>AGC	p.I81S	GJC1_uc002ihk.2_Missense_Mutation_p.I81S|GJC1_uc002ihl.2_Missense_Mutation_p.I81S|GJC1_uc010czx.2_Missense_Mutation_p.I81S|GJC1_uc010czy.1_5'Flank	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	81	Helical; (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				CACCAGGATGATCTGGAACAC	0.512000													25	73					0	0	0.00278032	0	0
GJC1	10052	broad.mit.edu	37	17	42883090	42883090	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:42883090C>T	uc002ihj.2	-	2	607	c.96G>A	c.(94-96)CGG>CGA	p.R32R	GJC1_uc002ihk.2_Silent_p.R32R|GJC1_uc002ihl.2_Silent_p.R32R|GJC1_uc010czx.2_Silent_p.R32R|GJC1_uc010czy.1_5'Flank	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	32	Helical; (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				TAAGGACGATCCGGAAGACAA	0.478000													14	39					0	0	0.00185496	0	0
TOB1	10140	broad.mit.edu	37	17	48940475	48940475	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:48940475G>A	uc002isw.2	-	1	939	c.904C>T	c.(904-906)CAG>TAG	p.Q302*	TOB1_uc010wmy.1_Nonsense_Mutation_p.Q302*|TOB1_uc010wmz.1_Nonsense_Mutation_p.Q302*	NM_005749	NP_005740	P50616	TOB1_HUMAN	transducer of ERBB2, 1	302					negative regulation of cell proliferation		SH3/SH2 adaptor activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			TTACTGTACTGGAGAGGACTG	0.413000													54	46					0	0	0.00361006	0	0
SPAG9	9043	broad.mit.edu	37	17	49118926	49118926	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:49118926G>A	uc002itc.2	-	5	886	c.677C>T	c.(676-678)ACC>ATC	p.T226I	SPAG9_uc002itb.2_Missense_Mutation_p.T226I|SPAG9_uc002itd.2_Missense_Mutation_p.T226I|SPAG9_uc002itf.2_Missense_Mutation_p.T61I|SPAG9_uc002ita.2_Missense_Mutation_p.T83I|SPAG9_uc002ite.2_Missense_Mutation_p.T56I|SPAG9_uc002itg.2_Missense_Mutation_p.T83I	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	226					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			AGATCCAGGGGTCTCTCCTCC	0.423000													16	57					0	0	0.00316338	0	0
MKS1	54903	broad.mit.edu	37	17	56293562	56293562	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:56293562G>A	uc002ivr.1	-	4	379	c.304C>T	c.(304-306)CCT>TCT	p.P102S	MKS1_uc010wnq.1_5'UTR|MKS1_uc002ivs.1_Missense_Mutation_p.P102S	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	102					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						TAATCCAAAGGACTCTGACAG	0.403000													72	40					0	0	0.00361006	0	0
DDX42	11325	broad.mit.edu	37	17	61889390	61889390	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:61889390G>A	uc002jbu.2	+	15	1754	c.1497G>A	c.(1495-1497)GGG>GGA	p.G499G	DDX42_uc002jbv.2_Silent_p.G499G|DDX42_uc002jbw.1_Silent_p.G235G|DDX42_uc002jbx.2_Silent_p.G235G|DDX42_uc002jby.2_Silent_p.G45G	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	499	Helicase C-terminal.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						CCTCTTCAGGGAGTGTCCTCC	0.458000													168	89					0	0	0.00361006	0	0
AXIN2	8313	broad.mit.edu	37	17	63545770	63545770	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:63545770T>C	uc002jfi.2	-	3	1113	c.824A>G	c.(823-825)AAG>AGG	p.K275R	AXIN2_uc010den.1_Missense_Mutation_p.K275R|AXIN2_uc002jfh.2_Missense_Mutation_p.K275R	NM_004655	NP_004646	Q9Y2T1	AXIN2_HUMAN	axin 2	275					cellular protein localization|cellular response to organic cyclic compound|dorsal/ventral axis specification|intramembranous ossification|maintenance of DNA repeat elements|mRNA stabilization|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of osteoblast differentiation|odontogenesis|positive regulation of cell death|positive regulation of epithelial to mesenchymal transition|positive regulation of protein phosphorylation|regulation of centromeric sister chromatid cohesion|regulation of mismatch repair|Wnt receptor signaling pathway involved in somitogenesis	Axin-APC-beta-catenin-GSK3B complex|cell cortex|centrosome|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|nucleus|plasma membrane|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			central_nervous_system(1)|skin(1)	2						ATCGCTCCTCTTGAAGGACCT	0.517000									Oligodontia_Ectodermal_Dysplasia_and_Colorectal_Polyp_syndrome				3	10					0	0	0.00024832	0	0
PRKCA	5578	broad.mit.edu	37	17	64800119	64800119	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:64800119C>T	uc002jfp.1	+	17	2027	c.1983C>T	c.(1981-1983)CCC>CCT	p.P661P		NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	661	AGC-kinase C-terminal.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	ATGTCAACCCCCAGTTTGTGC	0.522000													20	76					0	0	0.00229938	0	0
HELZ	9931	broad.mit.edu	37	17	65124822	65124822	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:65124822G>A	uc010wqk.1	-	24	3522	c.3335C>T	c.(3334-3336)GCT>GTT	p.A1112V	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.A1111V	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CAGTCTTAGAGCCCGGGGGAT	0.433000													44	211					0	0	0.00321405	0	0
SSTR2	6752	broad.mit.edu	37	17	71166474	71166474	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:71166474A>T	uc002jje.2	+	2	1376	c.1016A>T	c.(1015-1017)GAG>GTG	p.E339V		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	339	Cytoplasmic (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			GATGATGGGGAGCGGAGTGAC	0.522000													14	51					0	0	0.00316338	0	0
OTOP3	347741	broad.mit.edu	37	17	72943286	72943286	+	Missense_Mutation	SNP	C	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:72943286C>G	uc010wrr.1	+	6	1336	c.1336C>G	c.(1336-1338)CTC>GTC	p.L446V	OTOP3_uc010wrq.1_Missense_Mutation_p.L428V	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	446						integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					GCATGAGCTGCTCAACCGCCT	0.617000													5	34					0	0	0.000602214	0	0
MRPS7	51081	broad.mit.edu	37	17	73259559	73259559	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:73259559C>T	uc002jnm.3	+	4	711	c.478C>T	c.(478-480)CCC>TCC	p.P160S	GGA3_uc002jni.1_5'Flank|GGA3_uc002jnj.1_5'Flank|GGA3_uc010wrw.1_5'Flank|GGA3_uc002jnk.1_5'Flank|GGA3_uc010wrx.1_5'Flank|GGA3_uc010wry.1_5'Flank|GGA3_uc010wrz.1_5'Flank|MRPS7_uc002jnl.2_Missense_Mutation_p.P160S|MRPS7_uc002jnn.3_Missense_Mutation_p.P189S	NM_015971	NP_057055	Q9Y2R9	RT07_HUMAN	mitochondrial ribosomal protein S7 precursor	160					translation	cytosolic small ribosomal subunit|mitochondrion	protein binding|RNA binding|structural constituent of ribosome			central_nervous_system(1)	1	all_cancers(13;1.25e-07)|all_epithelial(9;2.63e-08)|Breast(9;1.06e-07)		all cancers(21;3.02e-07)|Epithelial(20;2.92e-06)			TGGGCTGGTACCCATCCTCAA	0.532000													55	251					0	0	0.00361006	0	0
RECQL5	9400	broad.mit.edu	37	17	73654435	73654435	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:73654435G>A	uc010dgl.2	-	7	1248	c.1092C>T	c.(1090-1092)TCC>TCT	p.S364S	RECQL5_uc010dgk.2_Silent_p.S337S|RECQL5_uc002jpb.1_Silent_p.S364S|RECQL5_uc002joz.3_Silent_p.S364S|RECQL5_uc002jpa.3_Silent_p.S364S	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	364	Helicase C-terminal.				DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			GGTCATTCCTGGAGTAATAGA	0.547000								Other_identified_genes_with_known_or_suspected_DNA_repair_function					96	127					0	0	0.00361006	0	0
EVPL	2125	broad.mit.edu	37	17	74005667	74005667	+	Missense_Mutation	SNP	C	T	T	rs147527679		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:74005667C>T	uc002jqi.2	-	22	3847	c.3619G>A	c.(3619-3621)GAG>AAG	p.E1207K	EVPL_uc010wss.1_Missense_Mutation_p.E1229K|EVPL_uc010wst.1_Missense_Mutation_p.E677K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1207	Central fibrous rod domain.|Plectin 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						ATCTCCTGCTCTGTCTCCGGA	0.622000													17	65					0	0	0.000566183	0	0
SLC16A3	9123	broad.mit.edu	37	17	80194685	80194685	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:80194685A>C	uc002kea.2	+	3	443	c.304A>C	c.(304-306)ATG>CTG	p.M102L	SLC16A3_uc002kee.2_Missense_Mutation_p.M102L|SLC16A3_uc002keb.2_Missense_Mutation_p.M102L|SLC16A3_uc002kec.2_Missense_Mutation_p.M102L|SLC16A3_uc002ked.2_Missense_Mutation_p.M102L	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	102	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	GTCGCTGGGCATGGTGGCTGC	0.662000											OREG0024821	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	55	36					0	0	0.00361006	0	0
METTL4	64863	broad.mit.edu	37	18	2554989	2554989	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:2554989G>A	uc002klh.3	-	4	1288	c.508C>T	c.(508-510)CTC>TTC	p.L170F	METTL4_uc010dkj.2_5'UTR	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	170					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						CCACTTTTGAGACCTTCCTGG	0.363000													95	160					0	0	0.00361006	0	0
KIAA0802	23255	broad.mit.edu	37	18	8720455	8720455	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:8720455C>T	uc002knr.2	+	4	460	c.318C>T	c.(316-318)TCC>TCT	p.S106S	KIAA0802_uc002knq.2_Silent_p.S106S	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	457	Potential.										0						TGGAAATATCCAAACAGGCCC	0.488000													21	39					0	0	0.00278032	0	0
MIB1	57534	broad.mit.edu	37	18	19424141	19424141	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:19424141C>T	uc002ktq.2	+	15	2138	c.2138C>T	c.(2137-2139)TCT>TTT	p.S713F	MIB1_uc002ktp.2_Missense_Mutation_p.S352F	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	713	ANK 9.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			CACACTTTGTCTCAGCTACGT	0.463000													45	57					0	0	0.00361006	0	0
DSC3	1825	broad.mit.edu	37	18	28584309	28584309	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:28584309G>A	uc002kwj.3	-	13	2067	c.1912C>T	c.(1912-1914)CAG>TAG	p.Q638*	DSC3_uc002kwi.3_Nonsense_Mutation_p.Q638*	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	638	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			GCATTTTTCTGATATGAAAGA	0.338000													45	53					0	0	0.00285205	0	0
DSG3	1830	broad.mit.edu	37	18	29041278	29041278	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:29041278G>A	uc002kws.2	+	8	1011	c.902G>A	c.(901-903)TGG>TAG	p.W301*		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	301	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACAGATAATTGGCTTGCAGTA	0.348000													30	38					0	0	0.00106085	0	0
WBP11P1	441818	broad.mit.edu	37	18	30093509	30093509	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:30093509C>T	uc010dmc.2	+	1		c.1884C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GCCACAGCAACCGTCACTGCC	0.493000													92	128					0	0	0.00361006	0	0
MYO5B	4645	broad.mit.edu	37	18	47527697	47527697	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:47527697G>A	uc002leb.2	-	5	828	c.540C>T	c.(538-540)TTC>TTT	p.F180F	MYO5B_uc002lec.1_Silent_p.F179F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	180	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAACGGTGGCGAAATAGCGCA	0.532000													69	73					0	0	0.00361006	0	0
MAPK4	5596	broad.mit.edu	37	18	48190390	48190390	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:48190390T>G	uc002lev.2	+	2	1062	c.62T>G	c.(61-63)GTT>GGT	p.V21G	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Missense_Mutation_p.V21G	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	21	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		GGGCGCTTTGTTGACTTCCAA	0.597000													41	71					0	0	0.0025221	0	0
SERPINB10	5273	broad.mit.edu	37	18	61602223	61602224	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:61602223_61602224CC>TT	uc010xev.1	+	8	1031_1032	c.941_942CC>TT	c.(940-942)GCC>GTT	p.A314V	SERPINB10_uc010xew.1_Missense_Mutation_p.A314V	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	314						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				ATGAGTGATGCCTTCAGCCAAA	0.416000													17	30					0	0	6.4e-05	0	0
SALL3	27164	broad.mit.edu	37	18	76754751	76754751	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:76754751G>A	uc002lmt.2	+	2	2760	c.2760G>A	c.(2758-2760)CCG>CCA	p.P920P	SALL3_uc010dra.2_Silent_p.P527P	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	920					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CCAAGTCCCCGGGCCTGGGCG	0.597000													9	9					0	0	0.000673444	0	0
SALL3	27164	broad.mit.edu	37	18	76754784	76754784	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:76754784C>T	uc002lmt.2	+	2	2793	c.2793C>T	c.(2791-2793)ATC>ATT	p.I931I	SALL3_uc010dra.2_Silent_p.I538I	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	931					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CCCAGGAAATCCCGCTCAAGA	0.552000													3	10					0	0	6.4e-05	0	0
MIER2	54531	broad.mit.edu	37	19	307350	307350	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:307350G>T	uc002lok.1	-	13	1394	c.1385C>A	c.(1384-1386)CCG>CAG	p.P462Q		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	462					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTCTGGCTCCGGAGCAGTGAC	0.677000													11	11					1.08611e-07	3.56032e-07	0.000978159	1	0
FAM108A1	81926	broad.mit.edu	37	19	1880087	1880087	+	Missense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:1880087A>C	uc002lug.2	-	3	766	c.360T>G	c.(358-360)AAT>AAG	p.N120K	FAM108A1_uc002lud.2_Intron|FAM108A1_uc002lue.2_Missense_Mutation_p.N120K|FAM108A1_uc002luf.2_Missense_Mutation_p.N171K	NM_001130111	NP_001123583	Q96GS6	F18A1_HUMAN	hypothetical protein LOC81926 isoform 2	120						extracellular region	hydrolase activity				0		Ovarian(11;0.000137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGTCCACGGCATTGCCGTGCG	0.632000													10	17					0	0	0.000978159	0	0
ZNF554	115196	broad.mit.edu	37	19	2833900	2833900	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:2833900G>T	uc002lwm.2	+	5	865	c.667G>T	c.(667-669)GGG>TGG	p.G223W	ZNF554_uc002lwl.2_Missense_Mutation_p.G172W	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCATGGATTTGGGGAAAATGG	0.512000													6	88					8.12818e-05	0.000264468	0.00198382	1	0
CHAF1A	10036	broad.mit.edu	37	19	4409732	4409732	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:4409732C>T	uc002mal.2	+	3	1036	c.936C>T	c.(934-936)TTC>TTT	p.F312F		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	312	Binds to CBX1 chromo shadow domain.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGTCCCTTCCCCACCTCCA	0.627000								Chromatin_Structure					22	20					0	0	0.000720815	0	0
MLLT1	4298	broad.mit.edu	37	19	6270714	6270714	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:6270714G>A	uc002mek.2	-	2	233	c.69C>T	c.(67-69)CCC>CCT	p.P23P		NM_005934	NP_005925	Q03111	ENL_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	23	YEATS.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|protein binding			skin(1)	1						CCTCCGTGGTGGGCTTCTTGC	0.617000			T	MLL	AL						OREG0025198	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	13					0	0	0.000978159	0	0
PNPLA6	10908	broad.mit.edu	37	19	7607900	7607900	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:7607900C>T	uc010xjq.1	+	15	1760	c.1565C>T	c.(1564-1566)TCC>TTC	p.S522F	PNPLA6_uc002mgq.1_Missense_Mutation_p.S474F|PNPLA6_uc010xjp.1_Intron|PNPLA6_uc002mgr.1_Missense_Mutation_p.S474F|PNPLA6_uc002mgs.2_Missense_Mutation_p.S513F	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	513	cNMP 2.|Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						CAGGACCCCTCCCTCCTGAAC	0.657000													20	16					0	0	0.00121646	0	0
ACTL9	284382	broad.mit.edu	37	19	8808716	8808716	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:8808716T>C	uc002mkl.2	-	1	457	c.336A>G	c.(334-336)CAA>CAG	p.Q112Q		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	112						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						TGCGCAGGGGTTGCACCAGCG	0.706000													9	21					0	0	0.000274275	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841397	8841397	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:8841397G>A	uc010xkg.1	+	1	7	c.7G>A	c.(7-9)GAT>AAT	p.D3N		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						AAACATGGGGGATGTGAATCA	0.428000													16	21					0	0	0.000566183	0	0
MUC16	94025	broad.mit.edu	37	19	8993038	8993038	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:8993038G>A	uc002mkp.2	-	67	41925	c.41721C>T	c.(41719-41721)TTC>TTT	p.F13907F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.F724F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13910	Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCGATGGGTGAAACCTGCAC	0.527000													12	51					0	0	0.00400662	0	0
MUC16	94025	broad.mit.edu	37	19	8994416	8994416	+	Splice_Site	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:8994416C>T	uc002mkp.2	-	64	41679	c.41475_splice	c.e64+1	p.L13825_splice	MUC16_uc010dwi.2_Splice_Site|MUC16_uc010dwj.2_Splice_Site_p.L642_splice|MUC16_uc010xki.1_Splice_Site	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16						cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGCTCTCACCAGGCCCTGA	0.562000													34	135					0	0	0.00111076	0	0
MUC16	94025	broad.mit.edu	37	19	9046744	9046745	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:9046744_9046745CC>TT	uc002mkp.2	-	5	35090_35091	c.34886_34887GG>AA	c.(34885-34887)GGG>GAA	p.G11629E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11631	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTCACTACCCCTGGTATACT	0.520000													29	37					0	0	6.4e-05	0	0
MUC16	94025	broad.mit.edu	37	19	9056344	9056344	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:9056344C>T	uc002mkp.2	-	3	31306	c.31102G>A	c.(31102-31104)GAG>AAG	p.E10368K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10370	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCTGCTCTCTGTCCCAAGA	0.478000													23	59					0	0	0.00278032	0	0
MUC16	94025	broad.mit.edu	37	19	9062981	9062981	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:9062981C>T	uc002mkp.2	-	3	24669	c.24465G>A	c.(24463-24465)AGG>AGA	p.R8155R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8157	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACTTCTGTCCTGGAGACTT	0.542000													18	49					0	0	0.00074312	0	0
ZNF177	7730	broad.mit.edu	37	19	9489680	9489680	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:9489680G>A	uc002mli.2	+	9	739	c.76G>A	c.(76-78)GAG>AAG	p.E26K	ZNF177_uc002mlj.2_5'UTR|ZNF177_uc002mlk.2_Missense_Mutation_p.E26K	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	26	KRAB.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTTTCCCAGGAGGAGTGGGC	0.458000													20	59					0	0	0.00188189	0	0
ZNF560	147741	broad.mit.edu	37	19	9579859	9579859	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:9579859C>T	uc002mlp.1	-	9	744	c.534G>A	c.(532-534)TGG>TGA	p.W178*	ZNF560_uc010dwr.1_Nonsense_Mutation_p.W72*	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	178	KRAB 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						GGCACATTTTCCATTCTGAAA	0.289000													4	7					0	0	0.000602214	0	0
ECSIT	51295	broad.mit.edu	37	19	11625030	11625030	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:11625030G>A	uc002msb.2	-	3	237	c.103C>T	c.(103-105)CGC>TGC	p.R35C	ECSIT_uc002msa.1_5'Flank|ECSIT_uc010dyc.1_Missense_Mutation_p.R35C|ECSIT_uc010dyd.2_Missense_Mutation_p.R35C|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	35					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						GGGAGCCGGCGAGGGACCTGG	0.677000													21	23					0	0	0.00188189	0	0
LPHN1	22859	broad.mit.edu	37	19	14263373	14263373	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:14263373G>C	uc010xnn.1	-	21	3787	c.3491C>G	c.(3490-3492)TCC>TGC	p.S1164C	LPHN1_uc010xno.1_Missense_Mutation_p.S1159C|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1164	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CGCCATGAAGGAGGACTCCGT	0.587000													12	6					0	0	0.00400662	0	0
PLVAP	83483	broad.mit.edu	37	19	17476173	17476173	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:17476173C>T	uc002ngk.1	-	3	1151	c.1101G>A	c.(1099-1101)GAG>GAA	p.E367E		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	367	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CCCTCTTCTTCTCTTCCAGCT	0.617000													23	65					0	0	0.000720815	0	0
CRLF1	9244	broad.mit.edu	37	19	18710594	18710594	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:18710594A>G	uc010ebt.1	-	2	372	c.178T>C	c.(178-180)TGC>CGC	p.C60R		NM_004750	NP_004741	O75462	CRLF1_HUMAN	cytokine receptor-like factor 1 precursor	60	Ig-like C2-type.				negative regulation of neuron apoptosis|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	cytokine binding|protein heterodimerization activity|receptor activity			central_nervous_system(1)	1						TGCACTGAGCAGGTGGCCAGC	0.667000													4	9					0	0	0.00024832	0	0
UPF1	5976	broad.mit.edu	37	19	18943081	18943081	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:18943081C>T	uc002nkg.2	+	1	338	c.63C>T	c.(61-63)GCC>GCT	p.A21A	UPF1_uc002nkf.2_Silent_p.A21A	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	21	Sufficient for interaction with RENT2.				cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CGGAGGAGGCCGAGCTGCTTG	0.567000													26	27					0	0	0.00178596	0	0
GMIP	51291	broad.mit.edu	37	19	19747524	19747524	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:19747524G>A	uc002nnd.2	-	13	1436	c.1319C>T	c.(1318-1320)TCC>TTC	p.S440F	GMIP_uc010xrb.1_Missense_Mutation_p.S440F|GMIP_uc010xrc.1_Missense_Mutation_p.S437F	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	440					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						ACCTGGGCTGGAAGTGGGTGA	0.612000													21	32					0	0	0.00332997	0	0
ZNF208	7757	broad.mit.edu	37	19	22156988	22156988	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:22156988T>G	uc002nqp.2	-	4	997	c.848A>C	c.(847-849)AAA>ACA	p.K283T	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTTGTTGGGTTTCTCTCCAGT	0.378000													12	16					0	0	0.000978159	0	0
ZNF257	113835	broad.mit.edu	37	19	22271596	22271596	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:22271596G>C	uc010ecx.2	+	4	1213	c.1044G>C	c.(1042-1044)GAG>GAC	p.E348D	ZNF257_uc010ecy.2_Missense_Mutation_p.E316D	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	348	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AATGTGAAGAGTGTGGCAAAG	0.408000													16	11					0	0	0.00152264	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767497	31767497	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:31767497G>A	uc002nsy.3	-	2	3267	c.3202C>T	c.(3202-3204)CCG>TCG	p.P1068S		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	1068					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					TGGTCTTCCGGAGATTTCCCG	0.468000													28	54					0	0	0.00106085	0	0
CCDC123	84902	broad.mit.edu	37	19	33444520	33444520	+	Splice_Site	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:33444520C>A	uc002nty.2	-	4	581	c.492_splice	c.e4+1	p.Q164_splice	CCDC123_uc002ntx.2_Splice_Site|CCDC123_uc010edg.2_Splice_Site|CCDC123_uc002ntz.1_Splice_Site_p.Q164_splice|CCDC123_uc002nua.2_Splice_Site_p.Q164_splice|CCDC123_uc002nub.1_Splice_Site_p.Q56_splice	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123							centrosome|spindle pole					0	Esophageal squamous(110;0.137)					ATAGAAAACACCTGATTTCTG	0.463000													17	498					1.1804e-14	3.89857e-14	0.00395357	1	0
FAM187B	148109	broad.mit.edu	37	19	35715983	35715983	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:35715983C>T	uc002nyk.1	-	2	900	c.855G>A	c.(853-855)AAG>AAA	p.K285K		NM_152481	NP_689694	Q17R55	F187B_HUMAN	family with sequence similarity 187, member B	285	Extracellular (Potential).					integral to membrane				ovary(2)	2						GCACGAAGCACTTGTAGACGG	0.652000													8	20					0	0	0.000274275	0	0
APLP1	333	broad.mit.edu	37	19	36369819	36369819	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:36369819C>T	uc002oce.2	+	15	1813	c.1675C>T	c.(1675-1677)CCT>TCT	p.P559S	APLP1_uc010xsz.1_Missense_Mutation_p.P520S|APLP1_uc002ocf.2_Missense_Mutation_p.P560S|APLP1_uc002ocg.2_Missense_Mutation_p.P463S|APLP1_uc010xta.1_Missense_Mutation_p.P553S	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	559	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAGGGGTTTCCCTTTCCACTC	0.587000													39	38					0	0	0.00195071	0	0
ZNF527	84503	broad.mit.edu	37	19	37871224	37871224	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:37871224G>A	uc010efk.1	+	4	317	c.206G>A	c.(205-207)GGG>GAG	p.G69E	ZNF527_uc002ogf.3_Intron|ZNF527_uc010xtq.1_RNA|ZNF527_uc002oge.2_Missense_Mutation_p.G69E	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	69	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTGGAGCAAGGGAAGGAACCG	0.483000													12	44					0	0	0.00185496	0	0
RYR1	6261	broad.mit.edu	37	19	39001408	39001408	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:39001408G>A	uc002oit.2	+	60	9239	c.9109G>A	c.(9109-9111)GAA>AAA	p.E3037K	RYR1_uc002oiu.2_Missense_Mutation_p.E3037K|RYR1_uc002oiv.1_5'UTR|RYR1_uc010xuf.1_5'Flank	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3037	Cytoplasmic.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAAGGAGAAGGAAATGATCAC	0.577000													33	28					0	0	0.00209593	0	0
DLL3	10683	broad.mit.edu	37	19	39994845	39994845	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:39994845C>T	uc002olx.2	+	5	845	c.787C>T	c.(787-789)CCG>TCG	p.P263S	DLL3_uc010egq.2_Missense_Mutation_p.P263S|DLL3_uc002olw.2_Missense_Mutation_p.P263S	NM_016941	NP_058637	Q9NYJ7	DLL3_HUMAN	delta-like 3 protein isoform 1 precursor	263	Extracellular (Potential).				Notch signaling pathway|skeletal system development	integral to membrane	Notch binding			central_nervous_system(2)|breast(1)	3	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCCCAGGGGCCCGTCCTCTGC	0.652000													10	31					0	0	0.000978159	0	0
CEACAM4	1089	broad.mit.edu	37	19	42133272	42133272	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:42133272G>A	uc002orh.1	-	1	171	c.60C>T	c.(58-60)ATC>ATT	p.I20I	CEACAM4_uc010xwd.1_Silent_p.I20I	NM_001817	NP_001808	O75871	CEAM4_HUMAN	carcinoembryonic antigen-related cell adhesion	20						integral to plasma membrane|membrane fraction					0						CCTCACCTGTGATCAGGAGCC	0.662000													8	14					0	0	0.000274275	0	0
POU2F2	5452	broad.mit.edu	37	19	42621408	42621408	+	Silent	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:42621408T>A	uc002osp.2	-	5	364	c.297A>T	c.(295-297)CTA>CTT	p.L99L	POU2F2_uc002osn.2_Silent_p.L99L|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Silent_p.L99L|POU2F2_uc002osr.1_Silent_p.L99L	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	99					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				TTACCCCAGCTAGCTGGCTGC	0.622000													15	71					0	0	0.000566183	0	0
PSG5	5673	broad.mit.edu	37	19	43680131	43680131	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:43680131C>T	uc002ovu.2	-	3	731	c.600G>A	c.(598-600)AGG>AGA	p.R200R	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Silent_p.R200R|PSG5_uc002ovv.2_Silent_p.R293R|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	200	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				GAATGAGGATCCTGTTTTCAA	0.507000													36	119					0	0	0.00361006	0	0
KCNN4	3783	broad.mit.edu	37	19	44273133	44273133	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:44273133G>A	uc002oxl.2	-	7	1497	c.1101C>T	c.(1099-1101)TCC>TCT	p.S367S	KCNN4_uc010eiz.2_Silent_p.S291S	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	367					defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	TGTCCACCATGGAGTTCACTT	0.572000													52	51					0	0	0.00361006	0	0
ZNF229	7772	broad.mit.edu	37	19	44934538	44934538	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:44934538G>A	uc002oze.1	-	6	852	c.418C>T	c.(418-420)CAT>TAT	p.H140Y	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.H134Y	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CACCCTTGATGGGGAGCAGCA	0.478000													27	72					0	0	0.001512	0	0
BCAM	4059	broad.mit.edu	37	19	45315444	45315444	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:45315444C>T	uc002ozu.2	+	3	273	c.229C>T	c.(229-231)CGC>TGC	p.R77C	BCAM_uc002ozt.1_Missense_Mutation_p.R77C	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	77	Extracellular (Potential).|Ig-like V-type 1.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				AGCTCGCCCCCGCCTAGCCTC	0.622000													32	32					0	0	0.00178596	0	0
CCDC61	729440	broad.mit.edu	37	19	46498700	46498700	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:46498700C>T	uc002pdw.2	+	2	98	c.98C>T	c.(97-99)TCC>TTC	p.S33F		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		AACGCCGGATCCTGGGGCGGG	0.622000													4	13					0	0	0.00024832	0	0
CCDC8	83987	broad.mit.edu	37	19	46915027	46915027	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:46915027G>A	uc002pep.2	-	1	1893	c.1041C>T	c.(1039-1041)GCC>GCT	p.A347A		NM_032040	NP_114429	Q9H0W5	CCDC8_HUMAN	coiled-coil domain containing 8	347						plasma membrane				ovary(3)	3				OV - Ovarian serous cystadenocarcinoma(262;4.66e-05)|all cancers(93;0.000582)|Epithelial(262;0.00428)|GBM - Glioblastoma multiforme(486;0.0421)		CCTCAGCTGGGGCCCCTGCCC	0.627000													59	66					0	0	0.00361006	0	0
FAM83E	54854	broad.mit.edu	37	19	49116419	49116419	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:49116419C>T	uc002pjn.2	-	1	276	c.211G>A	c.(211-213)GCT>ACT	p.A71T		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	71										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		CAGTCTTCAGCTGCCGCTGCC	0.667000													21	24					0	0	0.000720815	0	0
PPP1R15A	23645	broad.mit.edu	37	19	49377269	49377269	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:49377269G>A	uc002pky.3	+	2	1048	c.779G>A	c.(778-780)TGG>TAG	p.W260*		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	260	Glu-rich.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		CCCAGGTCCTGGGAGTATCGT	0.562000													10	32					0	0	0.000673444	0	0
SLC17A7	57030	broad.mit.edu	37	19	49934644	49934645	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:49934644_49934645GG>AA	uc002pnp.2	-	10	1383_1384	c.1211_1212CC>TT	c.(1210-1212)GCC>GTT	p.A404V	SLC17A7_uc002pno.2_Intron	NM_020309	NP_064705	Q9P2U7	VGLU1_HUMAN	solute carrier family 17, member 7	404	Helical; (Potential).				glutamate secretion|neurotransmitter secretion	cell junction|clathrin sculpted glutamate transport vesicle membrane|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|sodium-dependent phosphate transmembrane transporter activity|sodium:inorganic phosphate symporter activity			ovary(1)|pancreas(1)|skin(1)	3		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(486;0.0245)		GGAAGGAGATGGCCACGCCCTT	0.564000													12	51					0	0	6.4e-05	0	0
HAS1	3036	broad.mit.edu	37	19	52220346	52220346	+	Missense_Mutation	SNP	C	G	G	rs137939869		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:52220346C>G	uc002pxo.1	-	3	838	c.803G>C	c.(802-804)CGG>CCG	p.R268P	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Missense_Mutation_p.R233P|HAS1_uc002pxn.1_Missense_Mutation_p.R275P|HAS1_uc002pxp.1_Missense_Mutation_p.R267P	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	268	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GTTAAGGATCCGCACGTCCCC	0.607000													10	32					0	0	0.00136819	0	0
ZNF677	342926	broad.mit.edu	37	19	53740884	53740884	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:53740884C>T	uc002qbf.1	-	5	1281	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	ZNF677_uc002qbg.1_Missense_Mutation_p.E366K	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	366	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TGAATTCTTTCATGACCCCAA	0.398000													15	40					0	0	0.00244969	0	0
VN1R4	317703	broad.mit.edu	37	19	53770866	53770866	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:53770866C>T	uc010ydu.1	-	1	53	c.53G>A	c.(52-54)GGA>GAA	p.G18E		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	18	Helical; Name=1; (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		CCCCAGGACTCCCACCACGGT	0.498000										HNSCC(26;0.072)			19	51					0	0	0.000958276	0	0
LILRA3	11026	broad.mit.edu	37	19	54803746	54803746	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:54803746G>A	uc002qfd.2	-	3	143	c.78C>T	c.(76-78)CTC>CTT	p.L26L	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Silent_p.L26L	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	26					defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TGGGCTTGGGGAGGGGCCCTG	0.592000													27	37					0	0	0.00209593	0	0
LILRA5	353514	broad.mit.edu	37	19	54823302	54823302	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:54823302C>T	uc002qfe.2	-	4	361	c.241G>A	c.(241-243)GAG>AAG	p.E81K	LILRA5_uc002qff.2_Missense_Mutation_p.E69K|LILRA5_uc010yev.1_Missense_Mutation_p.E81K|LILRA5_uc010yew.1_Missense_Mutation_p.E69K|LILRA5_uc002qfh.1_Missense_Mutation_p.E69K|LILRA5_uc002qfg.1_Missense_Mutation_p.E81K	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	81	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGGCTTCCCTCTTTAACCAGA	0.592000													56	75					0	0	0.00361006	0	0
U2AF2	11338	broad.mit.edu	37	19	56171916	56171916	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:56171916C>T	uc002qlu.2	+	4	1320	c.265C>T	c.(265-267)CGT>TGT	p.R89C	U2AF2_uc002qlt.2_Missense_Mutation_p.R89C	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	89					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		GAAGAAGGTCCGTAAATACTG	0.637000													13	18					0	0	0.00316338	0	0
NLRP4	147945	broad.mit.edu	37	19	56369580	56369580	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:56369580C>T	uc002qmd.3	+	3	1243	c.821C>T	c.(820-822)TCC>TTC	p.S274F	NLRP4_uc002qmf.2_Missense_Mutation_p.S199F|NLRP4_uc010etf.2_Missense_Mutation_p.S105F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	274	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCGGAGGCCTCCCTGCTCATC	0.567000													23	45					0	0	0.00278032	0	0
NLRP5	126206	broad.mit.edu	37	19	56545024	56545024	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:56545024G>T	uc002qmj.2	+	9	2564	c.2564G>T	c.(2563-2565)AGG>ATG	p.R855M	NLRP5_uc002qmi.2_Missense_Mutation_p.R836M	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	855	LRR 5.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GAGGATGTAAGGATGGCGTGT	0.473000													8	209					0.00307968	0.00998332	0.00307968	1	0
ZNF211	10520	broad.mit.edu	37	19	58153489	58153489	+	Silent	SNP	C	T	T	rs138875681		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:58153489C>T	uc002qpq.2	+	3	1815	c.1635C>T	c.(1633-1635)TCC>TCT	p.S545S	ZNF211_uc010yhb.1_Silent_p.S549S|ZNF211_uc002qpp.2_Silent_p.S558S|ZNF211_uc002qpr.2_Silent_p.S609S|ZNF211_uc002qps.2_Silent_p.S610S|ZNF211_uc002qpt.2_Silent_p.S557S|ZNF211_uc010yhc.1_Silent_p.S557S|ZNF211_uc010yhd.1_Silent_p.S484S|ZNF211_uc010yhe.1_Silent_p.S536S	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	545	C2H2-type 12.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTGGGAAATCCTTTGGCTGCA	0.418000													29	73					0	0	0.00283554	0	0
ZNF418	147686	broad.mit.edu	37	19	58437580	58437580	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:58437580G>A	uc002qqs.1	-	4	2261	c.1969C>T	c.(1969-1971)CAT>TAT	p.H657Y	ZNF418_uc010yhn.1_RNA|ZNF418_uc010yho.1_Missense_Mutation_p.H572Y	NM_133460	NP_597717	Q8TF45	ZN418_HUMAN	zinc finger protein 418	657	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0158)		GAGCTTCGATGAAATGATTTT	0.413000													17	62					0	0	0.00188189	0	0
PXDN	7837	broad.mit.edu	37	2	1642681	1642682	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:1642681_1642682CC>TT	uc002qxa.2	-	21	4206_4207	c.4142_4143GG>AA	c.(4141-4143)GGG>GAA	p.G1381E		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1381					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		AGTCATTTGTCCCAGATGCATC	0.550000													16	32					0	0	6.4e-05	0	0
ATP6V1C2	245973	broad.mit.edu	37	2	10863030	10863031	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:10863030_10863031CT>TG	uc002ras.2	+	2	164_165	c.55_56CT>TG	c.(55-57)CTG>TGG	p.L19W	ATP6V1C2_uc002rat.2_Missense_Mutation_p.L19W	NM_001039362	NP_001034451	Q8NEY4	VATC2_HUMAN	vacuolar H+ ATPase C2 isoform a	19					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting V-type ATPase, V1 domain				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.15)|OV - Ovarian serous cystadenocarcinoma(76;0.152)		TTTGCAAGCTCTGGAGAGGATG	0.436000													5	37					0	0	6.4e-05	0	0
FAM49A	81553	broad.mit.edu	37	2	16743311	16743311	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:16743311C>T	uc010exm.1	-	5	545	c.397G>A	c.(397-399)GAA>AAA	p.E133K	FAM49A_uc002rck.1_Missense_Mutation_p.E133K	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	133						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			TGTAAAATTTCGGCAAACTCC	0.363000													19	27					0	0	0.00074312	0	0
KCNS3	3790	broad.mit.edu	37	2	18112978	18112978	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:18112978G>A	uc002rcv.2	+	3	1154	c.703G>A	c.(703-705)GGG>AGG	p.G235R	KCNS3_uc002rcw.2_Missense_Mutation_p.G235R	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	235	Helical; Name=Segment S2; (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTGGTTCACCGGGGAGCTTGC	0.517000													40	36					0	0	0.0025221	0	0
KCNS3	3790	broad.mit.edu	37	2	18113306	18113306	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:18113306C>T	uc002rcv.2	+	3	1482	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	KCNS3_uc002rcw.2_Missense_Mutation_p.S344F	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	344	Helical; Name=Segment S5; (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CTTATCTACTCCGTGGAGAAA	0.537000													31	34					0	0	0.00178596	0	0
MFSD2B	388931	broad.mit.edu	37	2	24239119	24239119	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:24239119C>T	uc002reo.1	+	3	330	c.316C>T	c.(316-318)CAG>TAG	p.Q106*	MFSD2B_uc010exz.1_RNA	NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	106					transport	integral to membrane				ovary(2)	2						CAACAGGAGCCAGAGGACAGG	0.592000													11	16					0	0	0.00185496	0	0
EHD3	30845	broad.mit.edu	37	2	31483590	31483590	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:31483590C>T	uc002rnu.2	+	4	1325	c.717C>T	c.(715-717)TCC>TCT	p.S239S	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	239					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					TCATGTGGTCCTTGGGGAAGA	0.592000													8	28					0	0	0.00307968	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656001	40656001	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:40656001C>T	uc002rrx.2	-	1	1444	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	SLC8A1_uc002rry.2_Missense_Mutation_p.E474K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E474K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E474K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E474K|SLC8A1_uc002rsb.1_Missense_Mutation_p.E474K|SLC8A1_uc010fan.1_Missense_Mutation_p.E474K|SLC8A1_uc002rsc.1_Missense_Mutation_p.E474K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	474	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACTCTGATTTCCTTCTGGGTA	0.408000													9	32					0	0	0.000274275	0	0
FOXN2	3344	broad.mit.edu	37	2	48602121	48602121	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:48602121C>T	uc002rwh.1	+	7	1150	c.835C>T	c.(835-837)CAT>TAT	p.H279Y		NM_002158	NP_002149	P32314	FOXN2_HUMAN	T-cell leukemia virus enhancer factor	279					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.0272)|LUSC - Lung squamous cell carcinoma(58;0.036)			CAATGCATTTCATCATCCCAG	0.408000													17	9					0	0	0.00400662	0	0
FSHR	2492	broad.mit.edu	37	2	49295379	49295379	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:49295379C>T	uc002rww.2	-	2	277	c.203G>A	c.(202-204)GGA>GAA	p.G68E	FSHR_uc002rwx.2_Missense_Mutation_p.G68E|FSHR_uc010fbn.2_Missense_Mutation_p.G68E|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	68	Extracellular (Potential).|LRR 1.				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	GTCCCCAAATCCTGAAAATGC	0.428000									Gonadal_Dysgenesis_46_XX				17	73					0	0	0.00278032	0	0
ERLEC1	27248	broad.mit.edu	37	2	54041733	54041733	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:54041733C>T	uc002rxl.2	+	12	1560	c.1280C>T	c.(1279-1281)CCA>CTA	p.P427L	ASB3_uc002rxi.3_Intron|ERLEC1_uc002rxm.2_Intron|ERLEC1_uc002rxn.2_Missense_Mutation_p.P373L	NM_015701	NP_056516	Q96DZ1	ERLEC_HUMAN	erlectin isoform 1	427					ER-associated protein catabolic process	endoplasmic reticulum lumen	glycoprotein binding|protein binding			ovary(2)	2						ACTGACAAACCAAGACAGGTG	0.323000													7	15					0	0	0.000442599	0	0
RPS27A	6233	broad.mit.edu	37	2	55459989	55459989	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:55459989G>A	uc010yow.1	+	2	226	c.29G>A	c.(28-30)GGG>GAG	p.G10E	C2orf63_uc002ryh.2_5'Flank|C2orf63_uc002ryi.2_5'Flank|C2orf63_uc002ryj.2_5'Flank|RPS27A_uc002ryk.2_Missense_Mutation_p.G10E|RPS27A_uc002ryl.2_RNA|RPS27A_uc002rym.2_RNA	NM_001135592	NP_001129064	P62979	RS27A_HUMAN	ubiquitin and ribosomal protein S27a precursor	10	Ubiquitin-like.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endocrine pancreas development|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	metal ion binding|structural constituent of ribosome			ovary(1)	1						ACCCTTACGGGGAAGACCATC	0.542000													8	16					0	0	0.000274275	0	0
ZNF638	27332	broad.mit.edu	37	2	71592693	71592694	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:71592693_71592694CC>TT	uc002shx.2	+	6	2171_2172	c.1852_1853CC>TT	c.(1852-1854)CCA>TTA	p.P618L	ZNF638_uc010fec.2_Missense_Mutation_p.P724L|ZNF638_uc010yqw.1_Missense_Mutation_p.P197L|ZNF638_uc002shw.2_Missense_Mutation_p.P618L|ZNF638_uc002shy.2_Missense_Mutation_p.P618L|ZNF638_uc002shz.2_Missense_Mutation_p.P618L|ZNF638_uc002sia.2_Missense_Mutation_p.P618L|ZNF638_uc002sib.1_Missense_Mutation_p.P618L|ZNF638_uc010fed.2_RNA	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	618					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						TGGAACAAAACCATCAGTTAAA	0.386000													7	11					0	0	6.4e-05	0	0
FBXO41	150726	broad.mit.edu	37	2	73492531	73492531	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:73492531C>T	uc002sjb.1	-	5	1626	c.1626G>A	c.(1624-1626)GGG>GGA	p.G542G		NM_001080410	NP_001073879	Q8TF61	FBX41_HUMAN	F-box protein 41	481						intracellular	protein binding|zinc ion binding			breast(2)|pancreas(1)	3						CACCCTCTTCCCCCTCAGTGC	0.701000													20	10					0	0	0.00121646	0	0
TTC31	64427	broad.mit.edu	37	2	74719532	74719533	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:74719532_74719533GG>AA	uc002slt.2	+	11	1144_1145	c.1121_1122GG>AA	c.(1120-1122)CGG>CAA	p.R374Q	TTC31_uc002sls.2_3'UTR|TTC31_uc010yrv.1_Intron|TTC31_uc002slu.2_Missense_Mutation_p.R228Q	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	374	TPR 3.						binding				0						GGCTGGCCCCGGGGCCTCTTCC	0.609000													20	25					0	0	6.4e-05	0	0
DQX1	165545	broad.mit.edu	37	2	74746338	74746338	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:74746338C>T	uc010yrw.1	-	11	1991	c.1826G>A	c.(1825-1827)GGG>GAG	p.G609E	DQX1_uc002smc.2_Missense_Mutation_p.G170E	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	609						nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						ATTTCCAGTCCCGTCTGTGTC	0.488000													8	26					0	0	0.000274275	0	0
RNF103	7844	broad.mit.edu	37	2	86832146	86832146	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:86832146G>A	uc002srn.2	-	4	1847	c.878C>T	c.(877-879)CCT>CTT	p.P293L	VPS24_uc010ytl.1_Intron|RNF103_uc002srm.2_Missense_Mutation_p.P154L|uc002sro.2_Intron	NM_005667	NP_005658	O00237	RN103_HUMAN	ring finger protein 103	293					central nervous system development|ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(1)	1						AATTCCTTCAGGAGTTCTAAG	0.358000													5	45					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	2	89247292	89247292	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:89247292C>T	uc010ytr.1	-	100		c.7892G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CCCTCATGTCCATGCTGTGTC	0.547000													40	23					0	0	0.00321405	0	0
Unknown	0	broad.mit.edu	37	2	90259991	90259991	+	RNA	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:90259991T>C	uc010fhm.2	+	30		c.3974T>C								Parts of antibodies, mostly variable regions.																		GTCTCCATCCTTACTCTCTGC	0.428000													17	52					0	0	0.000958276	0	0
SLC9A2	6549	broad.mit.edu	37	2	103274328	103274328	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:103274328C>T	uc002tca.2	+	2	737	c.595C>T	c.(595-597)CTC>TTC	p.L199F		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	199	Extracellular (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						AGCATTCGGCCTCAGCGACAT	0.488000													37	112					0	0	0.00170553	0	0
RGPD4	285190	broad.mit.edu	37	2	108487515	108487515	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:108487515G>A	uc010ywk.1	+	20	3137	c.3055G>A	c.(3055-3057)GGT>AGT	p.G1019S	RGPD4_uc002tdu.2_Missense_Mutation_p.G206S|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1019					intracellular transport		binding			skin(2)	2						AAACACTTCCGGTGACTTTGA	0.388000													125	126					0	0	0.00361006	0	0
NPHP1	4867	broad.mit.edu	37	2	110922710	110922710	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:110922710C>T	uc002tfn.3	-	7	741	c.647G>A	c.(646-648)GGC>GAC	p.G216D	NPHP1_uc002tfm.3_Missense_Mutation_p.G216D|NPHP1_uc002tfl.3_Missense_Mutation_p.G216D|NPHP1_uc002tfo.3_Missense_Mutation_p.G154D|NPHP1_uc010ywx.1_Missense_Mutation_p.G216D|NPHP1_uc010fjv.1_Missense_Mutation_p.G216D	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	216	Glu-rich.				actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TGACTCTTGGCCTTCTTCTTC	0.398000													33	43					0	0	0.00283554	0	0
ANAPC1	64682	broad.mit.edu	37	2	112630288	112630288	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:112630288A>G	uc002thi.2	-	6	777	c.530T>C	c.(529-531)GTT>GCT	p.V177A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	177					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						AACATTTGCAACCTTTCAGGT	0.353000													12	14					0	0	0.00244969	0	0
MARCO	8685	broad.mit.edu	37	2	119750702	119750702	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:119750702G>A	uc002tln.1	+	16	1387	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	MARCO_uc010yyf.1_Missense_Mutation_p.E341K	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	419	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TCACCCAGGTGAAAACTCAGT	0.517000													20	34					0	0	0.00152264	0	0
MYO7B	4648	broad.mit.edu	37	2	128324343	128324343	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:128324343C>T	uc002top.2	+	5	464	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	137	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TCTTTGCCATCGCCAACAACT	0.597000													5	11					0	0	0.00116845	0	0
GPR148	344561	broad.mit.edu	37	2	131487758	131487758	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:131487758C>T	uc002trv.1	+	1	1036	c.1034C>T	c.(1033-1035)ACC>ATC	p.T345I		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	345	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					GCCATCTTTACCATTTCCTAG	0.527000													4	3					0	0	0.00116845	0	0
MCM6	4175	broad.mit.edu	37	2	136630274	136630274	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:136630274A>G	uc002tuw.2	-	2	323	c.247T>C	c.(247-249)TTC>CTC	p.F83L		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	83					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	TACCTATAGAACTCCTCTTGA	0.428000													13	40					0	0	0.00185496	0	0
LRP1B	53353	broad.mit.edu	37	2	141777525	141777525	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:141777525G>A	uc002tvj.1	-	12	2908	c.1936C>T	c.(1936-1938)CAT>TAT	p.H646Y	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	646	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTCTGGGATGAGACATTTCA	0.373000										TSP Lung(27;0.18)			12	35					0	0	0.00136819	0	0
MBD5	55777	broad.mit.edu	37	2	149227049	149227049	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:149227049G>A	uc002twm.3	+	9	2525	c.1537G>A	c.(1537-1539)GAT>AAT	p.D513N	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.D513N|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	513						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TACCAAGTCCGATGGACATCA	0.473000													39	35					0	0	0.00170553	0	0
NEB	4703	broad.mit.edu	37	2	152506779	152506779	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:152506779G>A	uc010fnx.2	-	54	7533	c.7342C>T	c.(7342-7344)CGT>TGT	p.R2448C		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2448	Nebulin 65.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GGAGGCTGACGATATTTCTTC	0.463000													31	19					0	0	0.0024448	0	0
SCN3A	6328	broad.mit.edu	37	2	165997446	165997446	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:165997446G>A	uc002ucx.2	-	13	2226	c.1734C>T	c.(1732-1734)TTC>TTT	p.F578F	SCN3A_uc002ucy.2_Silent_p.F578F|SCN3A_uc002ucz.2_Silent_p.F578F|SCN3A_uc002uda.1_Silent_p.F447F|SCN3A_uc002udb.1_Silent_p.F447F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	578						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CTCTGAAACTGAAAATGCTTG	0.463000													14	26					0	0	0.00316338	0	0
G6PC2	57818	broad.mit.edu	37	2	169764518	169764518	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:169764518C>T	uc002uem.2	+	5	1089	c.997C>T	c.(997-999)CTA>TTA	p.L333L	G6PC2_uc002uen.2_3'UTR|G6PC2_uc010fpv.2_Silent_p.L217L	NM_021176	NP_066999	Q9NQR9	G6PC2_HUMAN	islet-specific glucose-6-phosphatase-related	333	Helical; (Potential).				gluconeogenesis|glucose homeostasis|glucose transport|regulation of insulin secretion|transmembrane transport	endoplasmic reticulum membrane|integral to membrane	glucose-6-phosphatase activity			pancreas(1)	1						ATCCATTCCCCTAACTGTGGT	0.423000													42	33					0	0	0.00222228	0	0
TTN	7273	broad.mit.edu	37	2	179425001	179425001	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179425001C>T	uc010zfg.1	-	275	78378	c.78154G>A	c.(78154-78156)GAA>AAA	p.E26052K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E19747K|TTN_uc010zfi.1_Missense_Mutation_p.E19680K|TTN_uc010zfj.1_Missense_Mutation_p.E19555K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26979							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTCATATTCACATCCTTCC	0.408000													18	40					0	0	0.00074312	0	0
TTN	7273	broad.mit.edu	37	2	179429624	179429624	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179429624G>A	uc010zfg.1	-	275	73755	c.73531C>T	c.(73531-73533)CCT>TCT	p.P24511S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P18206S|TTN_uc010zfi.1_Missense_Mutation_p.P18139S|TTN_uc010zfj.1_Missense_Mutation_p.P18014S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25438							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTCACAAAAGGAGTTCCAGGT	0.403000													6	39					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179439291	179439291	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179439291G>C	uc010zfg.1	-	275	64088	c.63864C>G	c.(63862-63864)AGC>AGG	p.S21288R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S14983R|TTN_uc010zfi.1_Missense_Mutation_p.S14916R|TTN_uc010zfj.1_Missense_Mutation_p.S14791R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22215							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAAAATGGGGCTTCCACCAT	0.433000													20	53					0	0	0.000958276	0	0
TTN	7273	broad.mit.edu	37	2	179466211	179466211	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179466211C>T	uc010zfg.1	-	236	48033	c.47809G>A	c.(47809-47811)GAC>AAC	p.D15937N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D9632N|TTN_uc010zfi.1_Missense_Mutation_p.D9565N|TTN_uc010zfj.1_Missense_Mutation_p.D9440N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16864							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCCATCGTCGTCTGGCATC	0.453000													26	94					0	0	0.00106085	0	0
TTN	7273	broad.mit.edu	37	2	179486283	179486283	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179486283G>A	uc010zfg.1	-	194	37788	c.37564C>T	c.(37564-37566)CAG>TAG	p.Q12522*	TTN_uc010zfh.1_Nonsense_Mutation_p.Q6217*|TTN_uc010zfi.1_Nonsense_Mutation_p.Q6150*|TTN_uc010zfj.1_Nonsense_Mutation_p.Q6025*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13449							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGCGTTCTGAATGACCAGG	0.453000													12	35					0	0	0.00136819	0	0
TTN	7273	broad.mit.edu	37	2	179495596	179495596	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179495596C>T	uc010zfg.1	-	187	36609	c.36385G>A	c.(36385-36387)GAA>AAA	p.E12129K	TTN_uc010zfh.1_Missense_Mutation_p.E5824K|TTN_uc010zfi.1_Missense_Mutation_p.E5757K|TTN_uc010zfj.1_Missense_Mutation_p.E5632K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13056							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGAGATTTCGGTTTCAAAG	0.493000													17	62					0	0	0.000566183	0	0
TTN	7273	broad.mit.edu	37	2	179522854	179522854	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179522854T>G	uc010zfk.1	-	29	2566	c.2018A>C	c.(2017-2019)AAA>ACA	p.K673T	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGAATTTCTTTTTCTGCGGC	0.413000													19	65					0	0	0.000878237	0	0
TTN	7273	broad.mit.edu	37	2	179584835	179584835	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179584835G>A	uc010zfg.1	-	78	20026	c.19802C>T	c.(19801-19803)TCA>TTA	p.S6601L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3262L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCAATGAATGAAATCCTGGT	0.428000													21	24					0	0	0.00188189	0	0
TTN	7273	broad.mit.edu	37	2	179605327	179605327	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179605327C>T	uc010zfh.1	-	46	12344	c.12120G>A	c.(12118-12120)GGG>GGA	p.G4040G	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.G3973G|TTN_uc010zfj.1_Silent_p.G3848G|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGATAATTCCCTTCAGGTT	0.383000													15	59					0	0	0.00400662	0	0
TTN	7273	broad.mit.edu	37	2	179615606	179615606	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179615606C>T	uc002unb.2	-	46	11745	c.11521G>A	c.(11521-11523)GAA>AAA	p.E3841K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCATAATTTCTTCCAGCTGT	0.378000													40	27					0	0	0.00148497	0	0
TTN	7273	broad.mit.edu	37	2	179621344	179621344	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:179621344G>A	uc010zfh.1	-	44	10570	c.10346C>T	c.(10345-10347)TCC>TTC	p.S3449F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGTGGATGGAACTTTGAGA	0.378000													14	36					0	0	0.00074312	0	0
ITGA4	3676	broad.mit.edu	37	2	182392032	182392032	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:182392032A>G	uc002unu.2	+	22	3111	c.2348A>G	c.(2347-2349)AAC>AGC	p.N783S	ITGA4_uc010frj.1_Missense_Mutation_p.N265S|ITGA4_uc002unv.2_Missense_Mutation_p.N28S	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	783	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AGGTTTGTAAACCCAACTTCA	0.299000													6	26					0	0	0.00116845	0	0
COL3A1	1281	broad.mit.edu	37	2	189868844	189868844	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:189868844G>A	uc002uqj.1	+	39	2915	c.2798G>A	c.(2797-2799)GGA>GAA	p.G933E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	933	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGAGAGAAGGGATCGCCTGGT	0.493000													12	30					0	0	0.00185496	0	0
COL5A2	1290	broad.mit.edu	37	2	189916152	189916152	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:189916152C>T	uc002uqk.2	-	42	3100	c.2825G>A	c.(2824-2826)GGT>GAT	p.G942D	COL5A2_uc010frx.2_Missense_Mutation_p.G518D	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	942					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCCACGAAGACCTGGAGGTCC	0.617000													8	20					0	0	0.000274275	0	0
ANKAR	150709	broad.mit.edu	37	2	190602435	190602435	+	Silent	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:190602435A>T	uc002uqw.1	+	17	3237	c.3237A>T	c.(3235-3237)GCA>GCT	p.A1079A	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_RNA|ANKAR_uc002uqy.1_Silent_p.A246A	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1150						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			CAGGCTATGCATTAACACTTT	0.308000													6	18					0	0	0.00116845	0	0
TRAK2	66008	broad.mit.edu	37	2	202254172	202254172	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:202254172G>A	uc002uyb.3	-	12	1694	c.1248C>T	c.(1246-1248)GGC>GGT	p.G416G		NM_015049	NP_055864	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	416	Interaction with HGS (By similarity).			Missing (in Ref. 2).		early endosome|plasma membrane	GABA receptor binding				0						AGATAGAGCGGCCCCGTGTGT	0.473000													8	29					0	0	0.000442599	0	0
PARD3B	117583	broad.mit.edu	37	2	206480438	206480438	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:206480438G>A	uc002var.1	+	23	3726	c.3519G>A	c.(3517-3519)CAG>CAA	p.Q1173Q	PARD3B_uc002vao.1_Silent_p.Q1072Q|PARD3B_uc002vap.1_Silent_p.Q1111Q|PARD3B_uc002vaq.1_Silent_p.Q1104Q|uc010fuc.1_5'Flank	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	1173					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CAGCCTATCAGGAAACAGGCA	0.622000													16	20					0	0	0.00400662	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209198165	209198165	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:209198165C>T	uc002vcz.2	+	24	4248	c.4090C>T	c.(4090-4092)CAT>TAT	p.H1364Y	PIKFYVE_uc002vcy.1_Missense_Mutation_p.H1308Y	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1364					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TCACTCCATCCATCATGATTA	0.443000													11	35					0	0	0.000978159	0	0
VIL1	7429	broad.mit.edu	37	2	219292738	219292738	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:219292738C>T	uc002via.2	+	5	463	c.398C>T	c.(397-399)TCC>TTC	p.S133F	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Missense_Mutation_p.S133F|VIL1_uc002vic.1_Missense_Mutation_p.S133F	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	133	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAGACCAACTCCTATGACGTC	0.617000													33	35					0	0	0.00327116	0	0
WDR69	164781	broad.mit.edu	37	2	228786229	228786229	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:228786229G>A	uc002vpn.1	+	12	1244	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	WDR69_uc010zlw.1_Missense_Mutation_p.E374K|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	389	WD 8.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		GCACACTGATGAAATCTTTTC	0.438000													22	28					0	0	0.00278032	0	0
SP100	6672	broad.mit.edu	37	2	231406069	231406069	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:231406069C>T	uc002vqu.1	+	27	2526	c.2385C>T	c.(2383-2385)TTC>TTT	p.F795F	SP100_uc010fxp.1_Silent_p.F113F	NM_001080391	NP_001073860	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 1	Error:Variant_position_missing_in_P23497_after_alignment					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GCTGCTTTTTCGCCTCAGAAC	0.388000													29	20					0	0	0.00283554	0	0
ALPI	248	broad.mit.edu	37	2	233323081	233323081	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:233323081C>T	uc002vst.3	+	9	1223	c.1146C>T	c.(1144-1146)TCC>TCT	p.S382S	ALPI_uc002vsu.3_Silent_p.S293S	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	382					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		ATGTCTTCTCCTTTGGTGGCT	0.572000													11	9					0	0	0.000978159	0	0
CHRND	1144	broad.mit.edu	37	2	233398938	233398938	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:233398938G>A	uc002vsw.2	+	11	1261	c.1257G>A	c.(1255-1257)CGG>CGA	p.R419R	CHRND_uc010zmg.1_Silent_p.R404R|CHRND_uc010fyc.2_Silent_p.R292R|CHRND_uc010zmh.1_Silent_p.R225R	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	419	Cytoplasmic (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		CTGTAGGCCGGCCCCCAGCAA	0.607000													31	25					0	0	0.001512	0	0
GIGYF2	26058	broad.mit.edu	37	2	233613726	233613726	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:233613726T>C	uc002vti.3	+	7	538	c.201T>C	c.(199-201)TTT>TTC	p.F67F	GIGYF2_uc010zmj.1_Silent_p.F67F|GIGYF2_uc002vtg.2_Silent_p.F67F|GIGYF2_uc002vtj.3_Silent_p.F67F|GIGYF2_uc002vtk.3_Silent_p.F67F|GIGYF2_uc002vth.3_Silent_p.F67F|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	67					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		ATAAAGAATTTCTGCCTATCC	0.408000													142	121					0	0	0.00361006	0	0
HJURP	55355	broad.mit.edu	37	2	234752853	234752853	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr2:234752853G>T	uc002vvg.2	-	7	638	c.572C>A	c.(571-573)CCC>CAC	p.P191H	HJURP_uc010znd.1_Missense_Mutation_p.P130H|HJURP_uc010zne.1_Missense_Mutation_p.P99H	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	191					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		ACACTCACCGGGGGCAGGCAC	0.557000													30	43					1.74807e-11	5.75899e-11	0.00209593	1	0
NSFL1C	55968	broad.mit.edu	37	20	1426367	1426367	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:1426367G>A	uc002wfc.2	-	8	1842	c.894C>T	c.(892-894)ATC>ATT	p.I298I	NSFL1C_uc002wfd.2_Silent_p.I187I|NSFL1C_uc002wfe.2_Silent_p.I267I|NSFL1C_uc002wff.2_RNA|NSFL1C_uc010gag.2_Silent_p.I64I	NM_016143	NP_057227	Q9UNZ2	NSF1C_HUMAN	p47 protein isoform a	298	UBX.					chromosome|Golgi stack|nucleus	lipid binding|protein binding				0						GCCGAATTTGGATGTTTGTGG	0.512000													127	181					0	0	0.00361006	0	0
CPXM1	56265	broad.mit.edu	37	20	2776787	2776787	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:2776787C>T	uc002wgu.2	-	10	1327	c.1263G>A	c.(1261-1263)TGG>TGA	p.W421*	CPXM1_uc010gas.2_Nonsense_Mutation_p.W421*	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	421					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						GGCCCTCGGCCCAGCCCACCA	0.602000													20	55					0	0	0.00121646	0	0
RASSF2	9770	broad.mit.edu	37	20	4768401	4768401	+	Splice_Site	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:4768401C>T	uc002wld.2	-	9	746	c.692_splice	c.e9-1	p.E231_splice	RASSF2_uc002wlc.2_Intron|RASSF2_uc002wle.2_Splice_Site|RASSF2_uc002wlf.2_Splice_Site_p.E231_splice|RASSF2_uc010gbh.2_5'Flank	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2						cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						TTCTGTTTCTCTGCAACCACA	0.532000													18	21					0	0	0.00121646	0	0
CHGB	1114	broad.mit.edu	37	20	5904156	5904156	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:5904156G>A	uc002wmg.2	+	4	1672	c.1366G>A	c.(1366-1368)GCA>ACA	p.A456T	CHGB_uc010zqz.1_Missense_Mutation_p.A139T	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	456						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GATGGACAAGGCAAGGAGGCA	0.542000													17	113					0	0	0.00074312	0	0
FERMT1	55612	broad.mit.edu	37	20	6088236	6088236	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:6088236C>T	uc002wmr.2	-	6	1581	c.792G>A	c.(790-792)GAG>GAA	p.E264E	FERMT1_uc010gbt.2_Silent_p.E7E|FERMT1_uc002wms.2_Silent_p.E264E|FERMT1_uc002wmt.2_Silent_p.E7E	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	264	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						GCTGCTCATCCTCTTGGATGC	0.353000													25	36					0	0	0.001512	0	0
ESF1	51575	broad.mit.edu	37	20	13752051	13752052	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:13752051_13752052CG>AT	uc002woj.2	-	6	1436_1437	c.1328_1329CG>AT	c.(1327-1329)CCG>CAT	p.P443H	ESF1_uc002wok.1_Missense_Mutation_p.P443H	NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	443					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						TAGCTGTTTCCGGAGAATCACA	0.337000													6	332					0	0	6.4e-05	0	0
C20orf12	55184	broad.mit.edu	37	20	18365132	18365133	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:18365132_18365133GG>AA	uc010zsa.1	-	21	2435_2436	c.2226_2227CC>TT	c.(2224-2229)GACCTT>GATTTT	p.L743F	C20orf12_uc010zrz.1_Missense_Mutation_p.L262F|C20orf12_uc002wqp.3_Missense_Mutation_p.L434F|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.L610F|C20orf12_uc002wqq.3_Missense_Mutation_p.L724F	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	551						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				GAGGTGACAAGGTCATCTCCAG	0.525000													12	14					0	0	6.4e-05	0	0
CD93	22918	broad.mit.edu	37	20	23064944	23064944	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:23064944G>A	uc002wsv.2	-	1	2034	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	629	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TGGAACCCAGGAGTAACTGTC	0.627000													100	104					0	0	0.00361006	0	0
FRG1B	284802	broad.mit.edu	37	20	29625905	29625905	+	Missense_Mutation	SNP	T	C	C	rs137871677	by1000genomes	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:29625905T>C	uc010ztl.1	+	2	91	c.59T>C	c.(58-60)CTT>CCT	p.L20P	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGAAAATATCTTGGTATAAAT	0.333000													5	74					0	0	0.000602214	0	0
ASXL1	171023	broad.mit.edu	37	20	31024332	31024332	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:31024332C>T	uc002wxs.2	+	12	4243	c.3817C>T	c.(3817-3819)CGT>TGT	p.R1273C	ASXL1_uc010geb.2_Missense_Mutation_p.R1164C	NM_015338	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 isoform 1	1273					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(239)|large_intestine(6)|central_nervous_system(2)|ovary(1)	248						GAGAACACCTCGTTTCTCATC	0.493000			F|N|Mis		MDS|CMML								48	41					0	0	0.00361006	0	0
C20orf114	92747	broad.mit.edu	37	20	31890751	31890751	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:31890751C>T	uc002wyw.1	+	11	1172	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	C20orf114_uc002wyx.1_RNA	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	337						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CTACCCAGATCGTGAAGATCC	0.418000													33	56					0	0	0.00428921	0	0
NDRG3	57446	broad.mit.edu	37	20	35282027	35282027	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:35282027G>A	uc002xfw.2	-	16	1106	c.1024C>T	c.(1024-1026)CCC>TCC	p.P342S	NDRG3_uc002xfx.2_Missense_Mutation_p.P330S|NDRG3_uc010zvq.1_Missense_Mutation_p.P247S|NDRG3_uc010zvr.1_Missense_Mutation_p.P230S	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	342					cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				CGGCTGAAGGGACTTTCTCCA	0.562000													12	55					0	0	0.00316338	0	0
C20orf132	140699	broad.mit.edu	37	20	35766354	35766354	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:35766354A>G	uc010zvu.1	-	15	1629	c.1538T>C	c.(1537-1539)GTT>GCT	p.V513A	C20orf132_uc002xgk.2_Missense_Mutation_p.V135A|C20orf132_uc002xgm.2_Missense_Mutation_p.V513A|C20orf132_uc002xgn.2_Missense_Mutation_p.V478A	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	388											0		Myeloproliferative disorder(115;0.00878)				GGCACAGATAACTCCCATAAT	0.398000													7	21					0	0	0.000274275	0	0
RPN2	6185	broad.mit.edu	37	20	35833295	35833295	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:35833295C>T	uc002xgp.2	+	6	985	c.681C>T	c.(679-681)TCC>TCT	p.S227S	RPN2_uc002xgo.3_Silent_p.S227S|RPN2_uc010gfw.2_Silent_p.S70S|RPN2_uc002xgq.2_Silent_p.S195S	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	227	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CTGAGCCATCCATTAAGGAGG	0.468000													44	84					0	0	0.00361006	0	0
KIAA1755	85449	broad.mit.edu	37	20	36870025	36870025	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:36870025C>T	uc002xhy.1	-	3	780	c.508G>A	c.(508-510)GAA>AAA	p.E170K	KIAA1755_uc002xhz.1_Missense_Mutation_p.E170K	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	170										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				ATCCCATTTTCTGATGCTACC	0.532000													54	111					0	0	0.00361006	0	0
TOX2	84969	broad.mit.edu	37	20	42680092	42680092	+	Silent	SNP	C	T	T	rs144641336		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:42680092C>T	uc002xlf.3	+	4	602	c.585C>T	c.(583-585)ATC>ATT	p.I195I	TOX2_uc010ggo.2_Silent_p.I186I|TOX2_uc002xle.3_Silent_p.I144I|TOX2_uc010ggp.2_Silent_p.I144I|TOX2_uc002xlg.2_Silent_p.I144I|TOX2_uc010zwk.1_Silent_p.I64I	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GGAGCAGCATCGCCCACAGCT	0.657000													18	19					0	0	0.000566183	0	0
SLC12A5	57468	broad.mit.edu	37	20	44678350	44678350	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:44678350G>A	uc010zxl.1	+	17	2247	c.2171G>A	c.(2170-2172)GGG>GAG	p.G724E	SLC12A5_uc010zxm.1_RNA|SLC12A5_uc002xrb.2_Missense_Mutation_p.G701E	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	724					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTGAAGGCGGGGAAGGGCCTG	0.617000													10	14					0	0	0.000673444	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354013	45354013	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:45354013C>T	uc002xsl.2	+	2	435	c.338C>T	c.(337-339)TCC>TTC	p.S113F		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	113	Helical; Name=4; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TTCGCCATTTCCCTCTCCTCC	0.662000													44	72					0	0	0.00222228	0	0
SALL4	57167	broad.mit.edu	37	20	50408085	50408085	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:50408085A>G	uc002xwh.3	-	2	1038	c.937T>C	c.(937-939)TTC>CTC	p.F313L	SALL4_uc010gii.2_Missense_Mutation_p.F313L|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	313					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTCAGAGTGAAGGGTGCCAGC	0.632000													52	36					0	0	0.00361006	0	0
SLC17A9	63910	broad.mit.edu	37	20	61594002	61594002	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:61594002C>T	uc002yea.3	+	5	708	c.524C>T	c.(523-525)TCC>TTC	p.S175F	SLC17A9_uc002ydz.3_Missense_Mutation_p.S169F|SLC17A9_uc011aap.1_Missense_Mutation_p.S195F	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	175	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						GCGGTGGGCTCCCTGCTCCTG	0.637000													25	88					0	0	0.000720815	0	0
DNAJC5	80331	broad.mit.edu	37	20	62559804	62559804	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr20:62559804C>T	uc002yhf.2	+	2	276	c.106C>T	c.(106-108)CGG>TGG	p.R36W	DNAJC5_uc002yhg.1_Missense_Mutation_p.R36W|DNAJC5_uc002yhh.2_RNA	NM_025219	NP_079495	Q9H3Z4	DNJC5_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	36	J.				neurotransmitter secretion|protein folding	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|melanosome|plasma membrane	heat shock protein binding|unfolded protein binding			pancreas(1)	1	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					AAAGTCCTATCGGTAAGTGGA	0.498000													29	32					0	0	0.00178596	0	0
TPTE	7179	broad.mit.edu	37	21	10996106	10996106	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr21:10996106C>T	uc002yis.1	-	12		c.2080G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTGCCCAGTTCGACTTCTTTG	0.413000													10	54					0	0	0.000978159	0	0
RNF160	26046	broad.mit.edu	37	21	30332977	30332977	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr21:30332977C>T	uc002ymr.2	-	12	2366	c.2353G>A	c.(2353-2355)GAT>AAT	p.D785N		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	739							ligase activity|zinc ion binding				0						CCAAGGATATCGCCTTTGAGC	0.383000													7	15					0	0	0.000442599	0	0
IFNAR1	3454	broad.mit.edu	37	21	34715885	34715885	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr21:34715885C>T	uc002yrn.2	+	5	723	c.576C>T	c.(574-576)CTC>CTT	p.L192L	IFNAR1_uc011adv.1_Silent_p.L123L	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	192	Fibronectin type-III 1.|Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	TTTATAAACTCTCACCAGAGA	0.294000													33	47					0	0	0.00178596	0	0
IGSF5	150084	broad.mit.edu	37	21	41173213	41173213	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr21:41173213C>T	uc002yyo.2	+	9	1256	c.1153C>T	c.(1153-1155)CCA>TCA	p.P385S		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	385	Cytoplasmic (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				TCCACCCAGGCCAGCAAGTCA	0.468000													24	6					0	0	0.001512	0	0
RRP1B	23076	broad.mit.edu	37	21	45107506	45107506	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr21:45107506G>A	uc002zdk.2	+	13	1365	c.1251G>A	c.(1249-1251)GGG>GGA	p.G417G	RRP1B_uc002zdl.2_5'UTR	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	417					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		CAGGCCCAGGGGGTGCAGCCC	0.582000													30	1					0	0	0.00106085	0	0
XKR3	150165	broad.mit.edu	37	22	17280873	17280873	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:17280873T>C	uc002zlv.2	-	3	475	c.377A>G	c.(376-378)AAT>AGT	p.N126S	XKR3_uc011agf.1_Missense_Mutation_p.N126S	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	126						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CTGTTTAAGATTTTTCAACCA	0.368000													38	53					0	0	0.00428921	0	0
CECR2	27443	broad.mit.edu	37	22	18022035	18022035	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:18022035C>T	uc010gqw.1	+	15	2263	c.2137C>T	c.(2137-2139)CCT>TCT	p.P713S	CECR2_uc010gqv.1_Missense_Mutation_p.P572S|CECR2_uc002zml.2_Missense_Mutation_p.P572S	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	755					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AGGATTCATTCCTCCCCGGCA	0.562000													8	11					0	0	0.000274275	0	0
DGCR14	8220	broad.mit.edu	37	22	19121829	19121829	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:19121829G>A	uc002zou.2	-	10	1348	c.1311C>T	c.(1309-1311)ACC>ACT	p.T437T	DGCR14_uc002zot.2_Silent_p.T358T|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	437					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					TGCTTGTGGGGGTCTGCAGCC	0.697000													13	23					0	0	0.00244969	0	0
LOC96610	96610	broad.mit.edu	37	22	23029786	23029786	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:23029786C>T	uc011aim.1	+	130		c.8394C>T								Parts of antibodies, mostly variable regions.												0						ACATAAACCCCTCCCCCTCTA	0.522000													4	45					0	0	0.00307968	0	0
IGLL1	3543	broad.mit.edu	37	22	23915751	23915751	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:23915751G>A	uc002zxd.2	-	3	462	c.344C>T	c.(343-345)TCG>TTG	p.S115L	IGLL1_uc002zxe.2_Silent_p.L76L	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	115	C region (By similarity to lambda light- chain).|Ig-like C1-type.				immune response	extracellular region|membrane					0						CAGAGTGACCGAGGGGGTGGC	0.577000													25	29					0	0	0.000720815	0	0
RGL4	266747	broad.mit.edu	37	22	24038875	24038876	+	Splice_Site	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:24038875_24038876GG>AA	uc002zxn.2	+	7	2331	c.1161_splice	c.e7+1	p.K387_splice	LOC91316_uc002zxk.3_Intron|LOC91316_uc010gua.2_Intron|LOC91316_uc002zxl.3_Intron|LOC91316_uc011aiz.1_Intron|LOC91316_uc002zxm.3_Intron|RGL4_uc002zxo.2_Splice_Site_p.K387_splice|RGL4_uc002zxp.1_Splice_Site_p.K251_splice|RGL4_uc002zxq.2_Splice_Site_p.K251_splice	NM_153615	NP_705843	Q8IZJ4	RGDSR_HUMAN	ral guanine nucleotide dissociation						small GTPase mediated signal transduction	cytoplasmic membrane-bounded vesicle	guanyl-nucleotide exchange factor activity			ovary(1)	1						GGCAGAAGAAGGTGAGTGAGCC	0.649000													9	17					0	0	6.4e-05	0	0
IGLL3	91353	broad.mit.edu	37	22	25714287	25714287	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:25714287C>T	uc003abr.2	+	1	400	c.300C>T	c.(298-300)TCC>TCT	p.S100S		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						GGTTTCAATCCAAGCATAATT	0.617000													31	54					0	0	0.00375469	0	0
PLA2G6	8398	broad.mit.edu	37	22	38512191	38512191	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:38512191G>A	uc003auy.1	-	13	1906	c.1770C>T	c.(1768-1770)GAC>GAT	p.D590D	PLA2G6_uc003auz.1_Silent_p.D536D|PLA2G6_uc003ava.1_Silent_p.D590D|PLA2G6_uc003avb.2_Silent_p.D536D|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc003aux.1_5'Flank	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	590					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	CCGGCTGCCGGTCAGACAGTG	0.587000													15	34					0	0	0.00400662	0	0
TNRC6B	23112	broad.mit.edu	37	22	40696486	40696486	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:40696486C>T	uc011aor.1	+	13	3947	c.3736C>T	c.(3736-3738)CCC>TCC	p.P1246S	TNRC6B_uc003aym.2_Missense_Mutation_p.P442S|TNRC6B_uc003ayn.3_Missense_Mutation_p.P1136S|TNRC6B_uc003ayo.2_Missense_Mutation_p.P993S	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1246					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CAAGCAGTTTCCCAACAGTGG	0.403000													13	17					0	0	0.00244969	0	0
MEI1	150365	broad.mit.edu	37	22	42190482	42190482	+	Splice_Site	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:42190482G>A	uc003baz.1	+	28	3559	c.3534_splice	c.e28+1	p.L1178_splice	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_Splice_Site|MEI1_uc003bbb.1_Splice_Site_p.L564_splice|MEI1_uc003bbc.1_Splice_Site_p.L546_splice|MEI1_uc010gym.1_Splice_Site_p.L511_splice|MEI1_uc003bbd.1_Splice_Site_p.L421_splice|MEI1_uc010gyn.1_Splice_Site|MEI1_uc003bbe.1_Splice_Site|MEI1_uc003bbf.2_Splice_Site_p.L192_splice|MEI1_uc003bbg.2_Splice_Site_p.L192_splice	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1								binding			central_nervous_system(1)|skin(1)	2						CATGACCCTGGTAAGTGCAGA	0.498000													91	115					0	0	0.00361006	0	0
LMF2	91289	broad.mit.edu	37	22	50945081	50945081	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr22:50945081G>A	uc003blp.2	-	3	394	c.363C>T	c.(361-363)TTC>TTT	p.F121F	LMF2_uc010hba.2_5'UTR|LMF2_uc003blo.2_Silent_p.F96F|NCAPH2_uc003blq.3_5'Flank|NCAPH2_uc003blv.2_5'Flank|NCAPH2_uc003blr.3_5'Flank|NCAPH2_uc010hbb.2_5'Flank|NCAPH2_uc003blu.3_5'Flank|NCAPH2_uc003bls.3_5'Flank|NCAPH2_uc003blt.3_5'Flank|NCAPH2_uc003blw.3_5'Flank|NCAPH2_uc003blx.3_5'Flank|NCAPH2_uc003bly.3_5'Flank	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	121	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGAAATAAAGGAACACCTGGC	0.652000													22	41					0	0	0.00106085	0	0
GRIP2	80852	broad.mit.edu	37	3	14535176	14535176	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:14535176G>A	uc011avi.1	-	25	3423	c.3423C>T	c.(3421-3423)CTC>CTT	p.L1141L	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Silent_p.L672L	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	1043					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GCTGACTTCAGAGCATCCGGG	0.652000													14	3					0	0	0.00400662	0	0
ARPP21	10777	broad.mit.edu	37	3	35770924	35770924	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:35770924G>A	uc003cgb.2	+	15	1619	c.1355G>A	c.(1354-1356)GGA>GAA	p.G452E	ARPP21_uc003cga.2_Missense_Mutation_p.G398E|ARPP21_uc011axy.1_Missense_Mutation_p.G418E|ARPP21_uc003cgf.2_Missense_Mutation_p.G253E|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	452						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCAGAGAATGGAATAGGGGGC	0.582000													43	4					0	0	0.00321405	0	0
SCN5A	6331	broad.mit.edu	37	3	38592250	38592250	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:38592250C>T	uc003cio.2	-	28	5807	c.5613G>A	c.(5611-5613)CTG>CTA	p.L1871L	SCN5A_uc003cin.2_Silent_p.L1870L|SCN5A_uc003cil.3_Silent_p.L1871L|SCN5A_uc010hhi.2_Silent_p.L1853L|SCN5A_uc010hhk.2_Silent_p.L1838L|SCN5A_uc011ayr.1_Silent_p.L1817L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1871					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCTGGATCTTCAGGGCGTCCA	0.582000													112	18					0	0	0.00361006	0	0
CSRNP1	64651	broad.mit.edu	37	3	39185825	39185825	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:39185825C>T	uc003cjg.2	-	4	797	c.583G>A	c.(583-585)GAA>AAA	p.E195K	CSRNP1_uc003cjh.2_Missense_Mutation_p.E195K	NM_033027	NP_149016	Q96S65	CSRN1_HUMAN	AXIN1 up-regulated 1	195					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(4)|skin(1)	5						AAGCTCACTTCTTCCAACCGG	0.637000													48	15					0	0	0.00361006	0	0
CELSR3	1951	broad.mit.edu	37	3	48698913	48698913	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:48698913G>A	uc003cul.2	-	1	1436	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	CELSR3_uc003cuf.1_Silent_p.I455I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	385	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCGCCGTACGGATAAGGCCGC	0.697000													16	22					0	0	0.00400662	0	0
ARIH2	10425	broad.mit.edu	37	3	49008135	49008135	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:49008135C>T	uc003cvb.2	+	8	1080	c.768C>T	c.(766-768)TTC>TTT	p.F256F	ARIH2_uc003cvc.2_Silent_p.F256F|ARIH2_uc003cvf.2_Silent_p.F174F|ARIH2_uc010hkl.2_Silent_p.F256F	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	256	IBR-type.				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		ACGAGGTCTTCTGGTAAGAGT	0.597000													39	3					0	0	0.000953801	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50431573	50431574	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:50431573_50431574GA>AT	uc003daq.2	-	4	469_470	c.431_432TC>AT	c.(430-432)TTC>TAT	p.F144Y	CACNA2D2_uc003dap.2_Missense_Mutation_p.F144Y	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	144	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	GTGCTTTCTGGAAGTTCTCTGC	0.589000													19	7					0	0	6.4e-05	0	0
PBRM1	55193	broad.mit.edu	37	3	52702643	52702643	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:52702643A>C	uc003des.2	-	3	267	c.255T>G	c.(253-255)TAT>TAG	p.Y85*	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Nonsense_Mutation_p.Y85*|PBRM1_uc003der.2_Nonsense_Mutation_p.Y85*|PBRM1_uc003det.2_Nonsense_Mutation_p.Y85*|PBRM1_uc003deu.2_Nonsense_Mutation_p.Y85*|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Nonsense_Mutation_p.Y85*|PBRM1_uc010hmk.1_Nonsense_Mutation_p.Y85*|PBRM1_uc003dey.2_Nonsense_Mutation_p.Y85*|PBRM1_uc003dez.1_Nonsense_Mutation_p.Y85*|PBRM1_uc003dfb.1_5'UTR	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	85	Bromo 1.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding	p.Y85fs*10(1)		kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		AAACCACTTCATAATAGTCTG	0.299000			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								34	9					0	0	0.00327116	0	0
PRKCD	5580	broad.mit.edu	37	3	53219703	53219703	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:53219703G>A	uc003dgl.2	+	11	1325	c.972G>A	c.(970-972)GGG>GGA	p.G324G	PRKCD_uc003dgm.2_Silent_p.G324G|PRKCD_uc010hmt.1_Silent_p.G96G	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	324					activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		GAGTTGCTGGGGAGGACATGC	0.552000													64	14					0	0	0.00361006	0	0
FOXP1	27086	broad.mit.edu	37	3	71161711	71161711	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:71161711C>T	uc003dol.2	-	3	581	c.258G>A	c.(256-258)AGG>AGA	p.R86R	FOXP1_uc003dom.2_Silent_p.R86R|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.R86R|FOXP1_uc003dop.2_Silent_p.R86R|FOXP1_uc003doq.1_Silent_p.R86R|FOXP1_uc003doj.2_5'UTR|FOXP1_uc003dok.2_5'UTR	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	86	Gln-rich.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GTTTGTCATTCCTCTTGGGAG	0.413000			T	PAX5	ALL								122	22					0	0	0.00361006	0	0
ROBO1	6091	broad.mit.edu	37	3	78667155	78667155	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:78667155C>T	uc003dqe.2	-	27	4120	c.3912G>A	c.(3910-3912)CCG>CCA	p.P1304P	ROBO1_uc003dqb.2_Silent_p.P1265P|ROBO1_uc003dqc.2_Silent_p.P1204P|ROBO1_uc003dqd.2_Silent_p.P1259P|ROBO1_uc010hoh.2_Silent_p.P496P|ROBO1_uc011bgl.1_Silent_p.P876P	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1304	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GAGGGGAGATCGGCCGTGGTG	0.493000													50	10					0	0	0.00361006	0	0
MORC1	27136	broad.mit.edu	37	3	108690227	108690227	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:108690227G>A	uc003dxl.2	-	25	2587	c.2500C>T	c.(2500-2502)CCT>TCT	p.P834S	MORC1_uc011bhn.1_Missense_Mutation_p.P813S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	834					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGATGCTCAGGAAAAAAATAC	0.403000													57	11					0	0	0.00361006	0	0
TAGLN3	29114	broad.mit.edu	37	3	111732306	111732306	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:111732306G>A	uc003dym.2	+	5	886	c.508G>A	c.(508-510)GGA>AGA	p.G170R	TAGLN3_uc003dyl.2_Missense_Mutation_p.G170R|TAGLN3_uc003dyn.2_Missense_Mutation_p.G170R|TAGLN3_uc003dyo.2_Missense_Mutation_p.G170R	NM_001008272	NP_001008273	Q9UI15	TAGL3_HUMAN	transgelin 3	170					central nervous system development|muscle organ development						0						GCTTCGCCAGGGACAGAACGT	0.557000													41	8					0	0	0.00148497	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111797664	111797664	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:111797664G>A	uc010hqb.2	+	15	2092	c.1922G>A	c.(1921-1923)GGG>GAG	p.G641E	TMPRSS7_uc011bhr.1_Missense_Mutation_p.G496E	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	767	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						TCCACCTACGGGATCATCACT	0.453000													43	8					0	0	0.00321405	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375998	113375998	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:113375998G>A	uc003eam.2	-	7	4942	c.4531C>T	c.(4531-4533)CAA>TAA	p.Q1511*	KIAA2018_uc003eal.2_Nonsense_Mutation_p.Q1455*	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1511	Gln-rich.				regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GTCCTCTGTTGGTGGACATTA	0.478000													64	13					0	0	0.00361006	0	0
B4GALT4	8702	broad.mit.edu	37	3	118937547	118937547	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:118937547G>A	uc003ecg.2	-	6	1388	c.747C>T	c.(745-747)TTC>TTT	p.F249F	B4GALT4_uc003ece.1_Silent_p.F249F|B4GALT4_uc003ecf.2_Intron|B4GALT4_uc003ech.2_Silent_p.F249F|B4GALT4_uc003eci.2_Silent_p.F249F|B4GALT4_uc011biy.1_Intron	NM_212543	NP_997708	O60513	B4GT4_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	249	Lumenal (Potential).				membrane lipid metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding|N-acetyllactosamine synthase activity				0				GBM - Glioblastoma multiforme(114;0.222)	N-Acetyl-D-glucosamine(DB00141)	AGTTGTTAGAGAATCCATTCA	0.498000													24	75					0	0	0.00332997	0	0
SEMA5B	54437	broad.mit.edu	37	3	122632719	122632719	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:122632719C>T	uc003efz.1	-	15	2422	c.2118G>A	c.(2116-2118)AAG>AAA	p.K706K	SEMA5B_uc011bju.1_Silent_p.K648K|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.K706K|SEMA5B_uc010hro.1_Silent_p.K648K|SEMA5B_uc003efy.1_5'Flank	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	706	Extracellular (Potential).|TSP type-1 1.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		CCTCCCGGCTCTTGCCCACGC	0.672000													67	14					0	0	0.00361006	0	0
MYLK	4638	broad.mit.edu	37	3	123368037	123368037	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:123368037C>T	uc003ego.2	-	25	4575	c.4293G>A	c.(4291-4293)CCG>CCA	p.P1431P	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Silent_p.P231P|MYLK_uc011bjw.1_Silent_p.P1431P|MYLK_uc003egp.2_Silent_p.P1362P|MYLK_uc003egq.2_Silent_p.P1431P|MYLK_uc003egr.2_Silent_p.P1362P|MYLK_uc003egs.2_Silent_p.P1255P	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1431	Actin-binding (calcium/calmodulin- insensitive) (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		CTTCATCCTTCGGCTCTGGGG	0.612000													38	9					0	0	0.00170553	0	0
COL6A6	131873	broad.mit.edu	37	3	130308020	130308020	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:130308020G>A	uc010htl.2	+	11	4243	c.4212G>A	c.(4210-4212)GGG>GGA	p.G1404G	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1404	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GACCACCAGGGAAAAGGGTGA	0.433000													37	5					0	0	0.00170553	0	0
CLSTN2	64084	broad.mit.edu	37	3	140265495	140265495	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:140265495C>T	uc003etn.2	+	10	1836	c.1646C>T	c.(1645-1647)TCC>TTC	p.S549F	CLSTN2_uc003etm.2_Missense_Mutation_p.S549F	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	549	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding	p.S549F(1)		skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GACATTAATTCCTTGGAAAGC	0.552000										HNSCC(16;0.037)			36	3					0	0	0.00128727	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142567189	142567189	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:142567189G>A	uc003evd.2	-	3	514	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	106	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						AAGTGCCACAGAAGCGGCCAA	0.527000													66	12					0	0	0.00361006	0	0
SI	6476	broad.mit.edu	37	3	164748616	164748616	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:164748616T>C	uc003fei.2	-	25	2838	c.2776A>G	c.(2776-2778)AAC>GAC	p.N926D		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	926	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACACTAAAGTTTCTTCCAAGA	0.254000										HNSCC(35;0.089)			73	14					0	0	0.00361006	0	0
ECT2	1894	broad.mit.edu	37	3	172486801	172486801	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:172486801C>T	uc003fii.2	+	12	1341	c.1203C>T	c.(1201-1203)ACC>ACT	p.T401T	ECT2_uc010hwv.1_Silent_p.T432T|ECT2_uc003fih.2_Silent_p.T400T|ECT2_uc003fij.1_Silent_p.T401T|ECT2_uc003fik.1_Silent_p.T401T|ECT2_uc003fil.1_Silent_p.T432T	NM_018098	NP_060568	Q9H8V3	ECT2_HUMAN	epithelial cell transforming sequence 2 oncogene	401					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|ovary(1)|skin(1)	4	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.33e-14)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)			TTTCAGACACCCCAAAGTCTT	0.363000													24	41					0	0	0.00332997	0	0
ATP13A5	344905	broad.mit.edu	37	3	192993046	192993046	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:192993046C>T	uc011bsq.1	-	30	3442	c.3442G>A	c.(3442-3444)GAA>AAA	p.E1148K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	1148					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AATCCAAATTCTCTTTTGATC	0.413000													44	60					0	0	0.00361006	0	0
ATP13A4	84239	broad.mit.edu	37	3	193153533	193153533	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:193153533C>T	uc003ftd.2	-	24	2781	c.2673G>A	c.(2671-2673)AAG>AAA	p.K891K	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	891	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CACGTCCTTCCCTGTGTAAGA	0.398000													81	10					0	0	0.00361006	0	0
TFRC	7037	broad.mit.edu	37	3	195782033	195782033	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:195782033T>C	uc003fvz.3	-	17	2100	c.1817A>G	c.(1816-1818)GAA>GGA	p.E606G	TFRC_uc003fwa.3_Missense_Mutation_p.E606G|TFRC_uc010hzy.2_Missense_Mutation_p.E525G|TFRC_uc011btr.1_Missense_Mutation_p.E324G	NM_003234	NP_003225	P02786	TFR1_HUMAN	transferrin receptor	606	Extracellular (Potential).|Ligand-binding.				cellular iron ion homeostasis|endocytosis|interspecies interaction between organisms|proteolysis|transferrin transport|transmembrane transport	coated pit|endosome|integral to plasma membrane|melanosome	peptidase activity|transferrin receptor activity			ovary(3)	3	all_cancers(143;1.94e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.36e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.17e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00233)		CAGGTTCAATTCAACATCATG	0.443000			T	BCL6	NHL								157	19					0	0	0.00361006	0	0
KIAA1530	57654	broad.mit.edu	37	4	1360164	1360165	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:1360164_1360165CC>TT	uc003gde.3	+	8	1680_1681	c.1233_1234CC>TT	c.(1231-1236)GTCCCT>GTTTCT	p.P412S	KIAA1530_uc010ibv.2_5'UTR	NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	412											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			TTGTGGAGGTCCCTGAGAAGGA	0.609000													63	124					0	0	6.4e-05	0	0
SEL1L3	23231	broad.mit.edu	37	4	25806174	25806174	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:25806174C>T	uc003gru.3	-	10	1917	c.1765G>A	c.(1765-1767)GAT>AAT	p.D589N	SEL1L3_uc003grv.2_5'UTR	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	589	Sel1-like 1.					integral to membrane	binding				0						TGCAGCTGATCCCGAGGAACA	0.448000													8	16					0	0	0.00307968	0	0
KLF3	51274	broad.mit.edu	37	4	38690514	38690514	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:38690514C>T	uc003gth.3	+	3	698	c.366C>T	c.(364-366)TCC>TCT	p.S122S	KLF3_uc003gtg.2_Silent_p.S122S	NM_016531	NP_057615	P57682	KLF3_HUMAN	Kruppel-like factor 3 (basic)	122	Pro-rich.				multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						TGCCGCTGTCCATGCCACCAG	0.637000													33	29					0	0	0.0024448	0	0
APBB2	323	broad.mit.edu	37	4	40936716	40936716	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:40936716C>T	uc003gvl.2	-	9	1735	c.1105G>A	c.(1105-1107)GAT>AAT	p.D369N	APBB2_uc010ifu.2_5'UTR|APBB2_uc003gvm.2_Missense_Mutation_p.D348N|APBB2_uc003gvn.2_Missense_Mutation_p.D370N|APBB2_uc011byt.1_Missense_Mutation_p.D331N	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	369					cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GCATGCAAATCCTAGAGGAAA	0.448000													11	28					0	0	0.000978159	0	0
GRXCR1	389207	broad.mit.edu	37	4	42964927	42964927	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:42964927G>A	uc003gwt.2	+	2	403	c.403G>A	c.(403-405)GAA>AAA	p.E135K		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	135	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AACTGATCTAGAATTTGACCG	0.373000													70	105					0	0	0.00361006	0	0
LNX1	84708	broad.mit.edu	37	4	54374252	54374252	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:54374252C>T	uc003hag.3	-	3	779	c.523G>A	c.(523-525)GAC>AAC	p.D175N	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.D79N|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	175						cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CCAGGCTCGTCTGTCATTAAG	0.632000													13	26					0	0	0.00244969	0	0
KDR	3791	broad.mit.edu	37	4	55972913	55972913	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:55972913C>T	uc003has.2	-	11	1779	c.1477G>A	c.(1477-1479)GGA>AGA	p.G493R	KDR_uc003hat.1_Missense_Mutation_p.G493R|KDR_uc011bzx.1_Missense_Mutation_p.G493R	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	493	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTATTTCCTCCCTGGAAGTCC	0.333000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			34	39					0	0	0.00283554	0	0
CENPC1	1060	broad.mit.edu	37	4	68385046	68385046	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:68385046A>G	uc003hdd.1	-	6	689	c.506T>C	c.(505-507)GTA>GCA	p.V169A	CENPC1_uc010ihj.1_RNA|CENPC1_uc010ihk.1_RNA|CENPC1_uc010ihm.1_Missense_Mutation_p.V169A	NM_001812	NP_001803	Q03188	CENPC_HUMAN	centromere protein C 1	169					mitotic prometaphase	condensed chromosome kinetochore|condensed nuclear chromosome, centromeric region|cytosol	DNA binding			urinary_tract(1)|lung(1)	2						ATTTTGTGATACAGATGTTTT	0.343000													19	110					0	0	0.000958276	0	0
STAP1	26228	broad.mit.edu	37	4	68424572	68424572	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:68424572C>T	uc003hde.3	+	1	127	c.45C>T	c.(43-45)TTC>TTT	p.F15F	STAP1_uc003hdf.2_Silent_p.F15F	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	15					cellular membrane fusion|intracellular protein transport	cytoplasm					0						GCAGGATCTTCCAGGAAAGGT	0.423000													55	81					0	0	0.00361006	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69097044	69097044	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:69097044C>T	uc003hdw.3	-	7	699	c.563G>A	c.(562-564)GGA>GAA	p.G188E		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	188	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GGAGCTTTTTCCATTCACAAT	0.483000													41	71					0	0	0.0025221	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681930	69681930	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:69681930C>T	uc003hee.2	+	1	218	c.193C>T	c.(193-195)CCC>TCC	p.P65S	UGT2B10_uc011cam.1_Missense_Mutation_p.P65S	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	65					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TCTTTTTGATCCCAACGACTC	0.368000													48	83					0	0	0.00361006	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962806	69962806	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:69962806C>T	uc003heg.3	+	1	614	c.568C>T	c.(568-570)CCT>TCT	p.P190S	UGT2B7_uc010ihq.2_Missense_Mutation_p.P190S	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	190					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ATTTATTTTCCCTCCTTCCTA	0.388000													36	61					0	0	0.00283554	0	0
UGT2A1	10941	broad.mit.edu	37	4	70455305	70455305	+	Nonsense_Mutation	SNP	G	A	A	rs139303872	byFrequency	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:70455305G>A	uc003hem.3	-	6	1432	c.1369C>T	c.(1369-1371)CGA>TGA	p.R457*	UGT2A1_uc011caq.1_Nonsense_Mutation_p.R623*|UGT2A1_uc010ihu.2_Nonsense_Mutation_p.R457*|UGT2A1_uc010iht.2_Nonsense_Mutation_p.R413*|UGT2A1_uc010ihs.2_Nonsense_Mutation_p.R458*	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	457	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AAGACTGCTCGATCCAGGGGC	0.448000													61	74					0	0	0.00361006	0	0
UGT2A1	10941	broad.mit.edu	37	4	70512912	70512912	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:70512912G>A	uc003hem.3	-	1	514	c.451C>T	c.(451-453)CCA>TCA	p.P151S	UGT2A1_uc011caq.1_Missense_Mutation_p.P151S|UGT2A1_uc010ihu.2_Missense_Mutation_p.P151S|UGT2A1_uc010iht.2_Missense_Mutation_p.P151S	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	151	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						GGAAATACTGGATCAGACACC	0.428000													18	42					0	0	0.000566183	0	0
STATH	6779	broad.mit.edu	37	4	70865523	70865523	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:70865523C>T	uc003heu.1	+	4	209	c.99C>T	c.(97-99)TTC>TTT	p.F33F	STATH_uc003hev.1_Intron	NM_003154	NP_003145	P02808	STAT_HUMAN	statherin isoform a	33			Missing (in statherin variants SV2 and SV3).		biomineral tissue development|negative regulation of bone mineralization|ossification|saliva secretion	extracellular region	extracellular matrix constituent, lubricant activity|hydroxyapatite binding|protein binding|structural constituent of tooth enamel			skin(1)	1						TTGGAAGATTCGGTGTAAGTG	0.308000													9	57					0	0	0.000673444	0	0
IGJ	3512	broad.mit.edu	37	4	71522094	71522094	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:71522094G>A	uc003hfn.3	-	4	573	c.432C>T	c.(430-432)ACC>ACT	p.T144T	IGJ_uc010ihz.2_Silent_p.T160T	NM_144646	NP_653247	P01591	IGJ_HUMAN	immunoglobulin J chain	144					immune response	extracellular region	antigen binding				0			Lung(101;0.235)			CCACCATTTTGGTCTCACCAC	0.448000													38	39					0	0	0.00222228	0	0
EREG	2069	broad.mit.edu	37	4	75231042	75231042	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:75231042G>A	uc003hie.1	+	1	183	c.17G>A	c.(16-18)AGG>AAG	p.R6K	EREG_uc003hid.2_5'UTR	NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	6					angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			GCGGGGAGGAGGATGGAGATG	0.701000													12	15					0	0	0.00136819	0	0
C4orf22	255119	broad.mit.edu	37	4	81866034	81866034	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:81866034C>T	uc003hmf.2	+	5	596	c.547C>T	c.(547-549)CCA>TCA	p.P183S	C4orf22_uc010ijp.2_Missense_Mutation_p.P200S	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	183										skin(2)	2						TGCCGATAATCCAGAAGGCTT	0.328000													37	52					0	0	0.00428921	0	0
C4orf22	255119	broad.mit.edu	37	4	81884751	81884751	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:81884751C>T	uc003hmf.2	+	6	736	c.687C>T	c.(685-687)TCC>TCT	p.S229S	C4orf22_uc010ijp.2_Silent_p.S246S	NM_152770	NP_689983	Q6V702	CD022_HUMAN	hypothetical protein LOC255119	229										skin(2)	2						ACCACATTTCCAGAAGGAAGA	0.343000													20	48					0	0	0.00121646	0	0
WDFY3	23001	broad.mit.edu	37	4	85611675	85611675	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:85611675G>A	uc003hpd.2	-	61	9755	c.9347C>T	c.(9346-9348)ACC>ATC	p.T3116I		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	3116						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GAGGGTGACGGTCTTGGCCTT	0.502000													44	69					0	0	0.00361006	0	0
HERC3	8916	broad.mit.edu	37	4	89571022	89571022	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:89571022C>T	uc003hrw.1	+	4	424	c.258C>T	c.(256-258)ATC>ATT	p.I86I	HERC3_uc003hrv.2_Silent_p.I86I|HERC3_uc011cdn.1_5'UTR	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	86	RCC1 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		ATCAGCATATCATTCATGTGG	0.498000													28	60					0	0	0.001512	0	0
ADH1B	125	broad.mit.edu	37	4	100237457	100237457	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:100237457C>T	uc003hus.3	-	4	346	c.262G>A	c.(262-264)GAT>AAT	p.D88N	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.D48N|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.D48N	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	88					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ATGACTTTATCACCTGGAGAG	0.368000													25	27					0	0	0.00395357	0	0
C4orf21	55345	broad.mit.edu	37	4	113505255	113505255	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:113505255G>A	uc003iau.2	-	15	4388	c.4177C>T	c.(4177-4179)CCA>TCA	p.P1393S	C4orf21_uc003iav.2_RNA	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	215						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		GAATATCCTGGAGTCACGTCC	0.383000													24	38					0	0	0.00278032	0	0
TRPC3	7222	broad.mit.edu	37	4	122846271	122846271	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:122846271G>A	uc003ieg.2	-	3	1152	c.1078C>T	c.(1078-1080)CTG>TTG	p.L360L	TRPC3_uc010inr.2_Silent_p.L287L|TRPC3_uc003ief.2_Silent_p.L287L|TRPC3_uc011cgl.1_Silent_p.L24L	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	275	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TCTCCATTCAGAATGGCTTCT	0.448000													61	76					0	0	0.00361006	0	0
SFRP2	6423	broad.mit.edu	37	4	154702764	154702764	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:154702764A>T	uc003inv.1	-	3	968	c.727T>A	c.(727-729)TTG>ATG	p.L243M		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	243	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				GTGCACTGCAAGCTGTCTTTG	0.532000													27	47					0	0	0.00395357	0	0
RXFP1	59350	broad.mit.edu	37	4	159560473	159560473	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:159560473C>T	uc003ipz.2	+	14	1187	c.1105C>T	c.(1105-1107)CTC>TTC	p.L369F	RXFP1_uc010iqj.1_Missense_Mutation_p.L198F|RXFP1_uc011cja.1_Missense_Mutation_p.L264F|RXFP1_uc010iqo.2_Missense_Mutation_p.L321F|RXFP1_uc011cjb.1_Missense_Mutation_p.L267F|RXFP1_uc010iqk.2_Missense_Mutation_p.L237F|RXFP1_uc011cjc.1_Missense_Mutation_p.L288F|RXFP1_uc011cjd.1_Missense_Mutation_p.L288F|RXFP1_uc010iql.2_Missense_Mutation_p.L213F|RXFP1_uc011cje.1_Missense_Mutation_p.L396F|RXFP1_uc010iqm.2_Missense_Mutation_p.L336F|RXFP1_uc011cjf.1_Missense_Mutation_p.L238F|RXFP1_uc010iqn.2_Missense_Mutation_p.L314F	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	369	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		TCTTATGAATCTCTCTCACAT	0.274000													23	46					0	0	0.00278032	0	0
TLL1	7092	broad.mit.edu	37	4	166976365	166976365	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:166976365G>A	uc003irh.1	+	13	2309	c.1662G>A	c.(1660-1662)ATG>ATA	p.M554I	TLL1_uc011cjn.1_Missense_Mutation_p.M577I|TLL1_uc011cjo.1_Missense_Mutation_p.M378I	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	554	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTTTGTGGATGAAGTTTGTTT	0.358000													29	55					0	0	0.00428921	0	0
ING2	3622	broad.mit.edu	37	4	184432048	184432048	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:184432048T>A	uc003ivs.1	+	2	915	c.786T>A	c.(784-786)AAT>AAA	p.N262K	ING2_uc011ckk.1_Missense_Mutation_p.N222K	NM_001564	NP_001555	Q9H160	ING2_HUMAN	inhibitor of growth family, member 2	262					chromatin modification|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of growth|signal transduction|transcription, DNA-dependent	CCAAT-binding factor complex|Sin3 complex	chromatin binding|DNA binding|protein complex binding|zinc ion binding			ovary(1)	1		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|all_hematologic(60;0.0207)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		GGGGAGATAATGAGAAAACAA	0.353000													14	24					0	0	0.00185496	0	0
CASP3	836	broad.mit.edu	37	4	185552973	185552973	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:185552973G>A	uc003iwh.2	-	6	692	c.429C>T	c.(427-429)TTC>TTT	p.F143F	CASP3_uc003iwg.2_Silent_p.F143F|CASP3_uc003iwi.2_Silent_p.F143F	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	143					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	GATCCCCTCTGAAAAAGTTTG	0.373000													62	56					0	0	0.00361006	0	0
SNX25	83891	broad.mit.edu	37	4	186244723	186244723	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr4:186244723C>T	uc003ixh.2	+	9	1215	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	SNX25_uc010ish.2_Silent_p.F113F|SNX25_uc003ixi.2_5'UTR	NM_031953	NP_114159	Q9H3E2	SNX25_HUMAN	sorting nexin 25	342	RGS.				cell communication|protein transport	endosome membrane	phosphatidylinositol binding|signal transducer activity			ovary(2)|breast(2)|pancreas(1)	5		all_lung(41;1.03e-13)|Lung NSC(41;2.5e-13)|Hepatocellular(41;0.00826)|Colorectal(36;0.00886)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0592)|all_neural(102;0.243)		all cancers(43;2.13e-24)|Epithelial(43;6.15e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.6e-11)|BRCA - Breast invasive adenocarcinoma(30;0.00013)|Colorectal(24;0.000165)|GBM - Glioblastoma multiforme(59;0.000357)|COAD - Colon adenocarcinoma(29;0.000887)|STAD - Stomach adenocarcinoma(60;0.00118)|LUSC - Lung squamous cell carcinoma(40;0.0129)|READ - Rectum adenocarcinoma(43;0.228)		ATCAGAATTTCTTTGTGGAGA	0.303000													40	57					0	0	0.00170553	0	0
EXOC3	11336	broad.mit.edu	37	5	462278	462278	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:462278C>T	uc003jba.2	+	9	1637	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S		NM_007277	NP_009208	O60645	EXOC3_HUMAN	Sec6 protein	514					exocytosis|protein transport						0		Ovarian(839;0.0563)	Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			GCAGGGAATCCATAGTCAGTT	0.562000													22	16					0	0	0.00188189	0	0
SEMA5A	9037	broad.mit.edu	37	5	9044626	9044626	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:9044626G>A	uc003jek.2	-	22	3676	c.2964C>T	c.(2962-2964)CTC>CTT	p.L988L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	988	Helical; (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AAGTATAGACGAGCAGGGTGA	0.562000													56	30					0	0	0.00361006	0	0
MARCH6	10299	broad.mit.edu	37	5	10405676	10405676	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:10405676C>T	uc003jet.1	+	16	1522	c.1339C>T	c.(1339-1341)CGA>TGA	p.R447*	MARCH6_uc011cmu.1_Nonsense_Mutation_p.R399*|MARCH6_uc003jeu.1_Nonsense_Mutation_p.R145*|MARCH6_uc011cmv.1_Nonsense_Mutation_p.R342*	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	447	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						GCAGGTACTTCGACCTGGTGT	0.328000													10	51					0	0	0.00136819	0	0
PDZD2	23037	broad.mit.edu	37	5	32088933	32088933	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:32088933C>T	uc003jhl.2	+	20	5767	c.5379C>T	c.(5377-5379)ATC>ATT	p.I1793I	PDZD2_uc003jhm.2_Silent_p.I1793I	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1793					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CAAAAATGATCGCTAGGAGGC	0.428000													47	25					0	0	0.00321405	0	0
UGT3A1	133688	broad.mit.edu	37	5	35991268	35991268	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:35991268G>A	uc003jjv.1	-	1	232	c.75C>T	c.(73-75)ATC>ATT	p.I25I	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.I25I|UGT3A1_uc011cor.1_Silent_p.I25I|UGT3A1_uc003jjy.1_Intron	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	25	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATATTGTCAGGATTTTGGCAG	0.592000													48	44					0	0	0.00361006	0	0
FYB	2533	broad.mit.edu	37	5	39119083	39119083	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:39119083G>A	uc003jls.2	-	14	2223	c.2156C>T	c.(2155-2157)TCT>TTT	p.S719F	FYB_uc003jlt.2_Missense_Mutation_p.S765F|FYB_uc003jlu.2_Missense_Mutation_p.S719F|FYB_uc011cpl.1_Missense_Mutation_p.S775F	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	719					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			CCACTTTTTAGAAGTTATGGA	0.313000													9	33					0	0	0.000274275	0	0
GHR	2690	broad.mit.edu	37	5	42718182	42718182	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:42718182C>T	uc003jmt.2	+	9	947	c.904C>T	c.(904-906)CCA>TCA	p.P302S	GHR_uc011cpq.1_Missense_Mutation_p.P115S	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	302	Cytoplasmic (Potential).|Box 1 motif.				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GCCCCCAGTTCCAGTTCCAAA	0.318000													13	52					0	0	0.000566183	0	0
IL31RA	133396	broad.mit.edu	37	5	55212490	55212490	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:55212490G>A	uc003jql.2	+	15	1902	c.1837G>A	c.(1837-1839)GAG>AAG	p.E613K	IL31RA_uc003jqm.2_Missense_Mutation_p.E581K|IL31RA_uc003jqn.2_Missense_Mutation_p.E613K|IL31RA_uc003jqo.2_Missense_Mutation_p.E471K	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	581	Cytoplasmic (Potential).				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				AAACCTGAAGGAGTCTGATGA	0.443000													27	74					0	0	0.000720815	0	0
ANKRD55	79722	broad.mit.edu	37	5	55422854	55422854	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:55422854C>T	uc003jqu.2	-	8	844	c.692G>A	c.(691-693)GGG>GAG	p.G231E		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	230	ANK 7.									skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				ACATGTCTTCCCACTCTCATC	0.488000													86	62					0	0	0.00361006	0	0
SFRS12	140890	broad.mit.edu	37	5	65466563	65466564	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:65466563_65466564CC>GT	uc003juo.2	+	10	1584_1585	c.924_925CC>GT	c.(922-927)GACCGG>GAGTGG	p.308_309DR>EW	SFRS12_uc003jun.2_Missense_Mutation_p.424_425DR>EW|SFRS12_uc010iwy.2_Missense_Mutation_p.308_309DR>EW	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	308_309	Arg/Glu/Lys/Ser-rich.				mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		GGGAAAAGGACCGggaaaaaga	0.149000													12	4					0	0	6.4e-05	0	0
HAPLN1	1404	broad.mit.edu	37	5	82940241	82940241	+	Missense_Mutation	SNP	C	T	T	rs139074313		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:82940241C>T	uc003kim.2	-	3	787	c.716G>A	c.(715-717)GGA>GAA	p.G239E	HAPLN1_uc003kin.2_Missense_Mutation_p.G239E	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	239	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding	p.G239E(1)		large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		ATCCCAAAATCCGTAGTTCCT	0.453000													63	28					0	0	0.00361006	0	0
GPR98	84059	broad.mit.edu	37	5	89924546	89924546	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:89924546T>C	uc003kju.2	+	8	1502	c.1406T>C	c.(1405-1407)CTT>CCT	p.L469P	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	469	Extracellular (Potential).|Calx-beta 4.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACAATTCCTCTTACTGTGGTT	0.483000													31	88					0	0	0.00327116	0	0
MCTP1	79772	broad.mit.edu	37	5	94353135	94353135	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:94353135G>A	uc003kkx.2	-	2	774	c.774C>T	c.(772-774)CCC>CCT	p.P258P	MCTP1_uc003kkv.2_Silent_p.P37P|MCTP1_uc003kkw.2_Silent_p.P37P|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	258	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GGTACATTCCGGGATCAGCCA	0.383000													91	58					0	0	0.00361006	0	0
DMXL1	1657	broad.mit.edu	37	5	118484982	118484982	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:118484982C>T	uc003ksd.2	+	18	3641	c.3460C>T	c.(3460-3462)CTG>TTG	p.L1154L	DMXL1_uc010jcl.1_Silent_p.L1154L	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	1154	WD 9.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TTCTCATATCCTGACTGTAGG	0.393000													26	107					0	0	0.00395357	0	0
ZNF474	133923	broad.mit.edu	37	5	121488724	121488724	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:121488724G>A	uc003ksv.2	+	2	1415	c.1039G>A	c.(1039-1041)GTA>ATA	p.V347I		NM_207317	NP_997200	Q6S9Z5	ZN474_HUMAN	zinc finger protein 474	347						intracellular	zinc ion binding				0		all_cancers(142;0.229)|Prostate(80;0.0387)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000197)|Epithelial(69;0.00029)|all cancers(49;0.00415)		AACTGATAAGGTAATTCATGC	0.468000													8	44					0	0	0.000274275	0	0
SEC24A	10802	broad.mit.edu	37	5	134050782	134050782	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:134050782C>T	uc003kzs.2	+	19	3084	c.2796C>T	c.(2794-2796)AAC>AAT	p.N932N	SEC24A_uc011cxu.1_Silent_p.N696N	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	932					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AAGTGAAAAACCAGCCCTTGG	0.408000													14	62					0	0	0.00244969	0	0
LOC153328	153328	broad.mit.edu	37	5	135188281	135188281	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:135188281C>T	uc003laz.1	+	4	364	c.192C>T	c.(190-192)TTC>TTT	p.F64F	LOC153328_uc003lba.2_Silent_p.F64F			Q6ZT89	S2548_HUMAN	RecName: Full=Putative mitochondrial carrier protein FLJ44862;	64	Solcar 1.|Helical; Name=2; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCATGTCCTTCCCCCTCGCCA	0.627000													24	119					0	0	0.00395357	0	0
TRPC7	57113	broad.mit.edu	37	5	135692628	135692628	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:135692628C>T	uc003lbn.1	-	1	448	c.445G>A	c.(445-447)GAC>AAC	p.D149N	TRPC7_uc010jef.1_Missense_Mutation_p.D141N|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.D141N|TRPC7_uc010jei.1_Missense_Mutation_p.D141N|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	150	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCATAGAAGTCGTCGTCGCGC	0.652000													31	78					0	0	0.00283554	0	0
SLC23A1	9963	broad.mit.edu	37	5	138707828	138707828	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:138707828C>T	uc003leh.2	-	14	1761	c.1664G>A	c.(1663-1665)AGA>AAA	p.R555K	SLC23A1_uc003leg.2_Missense_Mutation_p.R559K	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	555					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	AAAGGTAATTCTTTTTACTAT	0.428000													26	90					0	0	0.000720815	0	0
PCDHA1	56147	broad.mit.edu	37	5	140166773	140166773	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140166773G>A	uc003lhb.2	+	1	898	c.898G>A	c.(898-900)GGA>AGA	p.G300R	PCDHA1_uc003lha.2_Missense_Mutation_p.G300R|PCDHA1_uc003lgz.2_Missense_Mutation_p.G300R	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCCAGCTCAGGAGAAATTAG	0.368000													57	49					0	0	0.00361006	0	0
PCDHA3	56145	broad.mit.edu	37	5	140180842	140180842	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140180842C>T	uc003lhf.2	+	1	60	c.60C>T	c.(58-60)CTC>CTT	p.L20L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.L20L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	20					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTTCTGCTCCTCGCAGCCT	0.572000													84	24					0	0	0.00361006	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182967	140182967	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140182967G>A	uc003lhf.2	+	1	2185	c.2185G>A	c.(2185-2187)GAA>AAA	p.E729K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.E729K	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	729	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGCCAACCGAAGGCGACTG	0.632000													33	107					0	0	0.00428921	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256947	140256947	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140256947G>A	uc003lic.2	+	1	2017	c.1890G>A	c.(1888-1890)GAG>GAA	p.E630E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.E630E	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	630	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACACTGGCGAGATCAGCACGA	0.672000													31	14					0	0	0.00283554	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572167	140572167	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140572167C>T	uc003lix.2	+	1	216	c.42C>T	c.(40-42)GTC>GTT	p.V14V		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	14					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAGGCAAGTCCTGTTTCTTT	0.463000													93	72					0	0	0.00361006	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588590	140588590	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140588590G>A	uc003liz.2	+	1	300	c.111G>A	c.(109-111)GAG>GAA	p.E37E	PCDHB12_uc011dak.1_5'UTR	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	37	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGATGGAGGAATTGCAGA	0.527000													96	46					0	0	0.00361006	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140712475	140712475	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140712475G>A	uc003lji.1	+	1	2224	c.2224G>A	c.(2224-2226)GGC>AGC	p.G742S	PCDHGA1_uc011dan.1_Missense_Mutation_p.G742S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	742	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACTTTGTGGGCGTGGACGG	0.637000													14	64					0	0	0.00244969	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769536	140769536	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140769536C>T	uc003lkc.1	+	1	2085	c.2085C>T	c.(2083-2085)GCC>GCT	p.A695A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.A695A	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	695	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGCCTTGGCCTTGATCTCAG	0.632000													29	131					0	0	0.00106085	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798046	140798046	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:140798046C>T	uc003lkn.1	+	1	765	c.620C>T	c.(619-621)GCT>GTT	p.A207V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.A207V|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	207	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCAGAGCGCTCACCACTTG	0.498000													12	57					0	0	0.00136819	0	0
AFAP1L1	134265	broad.mit.edu	37	5	148715246	148715246	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:148715246C>T	uc003lqh.2	+	18	2375	c.2244C>T	c.(2242-2244)ATC>ATT	p.I748I	AFAP1L1_uc010jgy.2_Intron|AFAP1L1_uc003lqi.1_Silent_p.I363I	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	748							protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCATCCATCGTAGCCTCCA	0.502000													76	58					0	0	0.00361006	0	0
GRIA1	2890	broad.mit.edu	37	5	153182025	153182025	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:153182025C>T	uc003lva.3	+	15	2860	c.2495C>T	c.(2494-2496)TCC>TTC	p.S832F	GRIA1_uc003luy.3_Missense_Mutation_p.S832F|GRIA1_uc003luz.3_Missense_Mutation_p.S737F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.S752F|GRIA1_uc011dcx.1_Missense_Mutation_p.S763F|GRIA1_uc011dcy.1_Missense_Mutation_p.S842F|GRIA1_uc011dcz.1_Missense_Mutation_p.S842F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	832	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGCTACAAATCCCGTAGTGAA	0.532000													47	173					0	0	0.00361006	0	0
TIMD4	91937	broad.mit.edu	37	5	156378734	156378734	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:156378734G>A	uc003lwh.2	-	3	525	c.468C>T	c.(466-468)ACC>ACT	p.T156T	TIMD4_uc010jii.2_Silent_p.T156T	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	156	Extracellular (Potential).|Thr-rich.					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTTGTCGGGTGGTGGTGGGGC	0.532000													534	288					0	0	0.00361006	0	0
SOX30	11063	broad.mit.edu	37	5	157078445	157078445	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:157078445C>T	uc003lxb.1	-	1	984	c.642G>A	c.(640-642)ACG>ACA	p.T214T	SOX30_uc003lxc.1_Silent_p.T214T|SOX30_uc011dds.1_Intron	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	214					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGGGTTCCTCCGTTTTGATCA	0.637000													85	37					0	0	0.00361006	0	0
MAT2B	27430	broad.mit.edu	37	5	162939023	162939023	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:162939023C>T	uc003lzk.2	+	2	187	c.79C>T	c.(79-81)CCT>TCT	p.P27S	MAT2B_uc003lzj.2_Missense_Mutation_p.P16S|MAT2B_uc003lzl.1_Missense_Mutation_p.P27S	NM_013283	NP_037415	Q9NZL9	MAT2B_HUMAN	methionine adenosyltransferase II, beta isoform	27					extracellular polysaccharide biosynthetic process|methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol|methionine adenosyltransferase complex|nucleus	dTDP-4-dehydrorhamnose reductase activity|methionine adenosyltransferase regulator activity|protein binding			upper_aerodigestive_tract(1)	1	Renal(175;0.000281)	Medulloblastoma(196;0.0208)|all_neural(177;0.0765)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.027)|OV - Ovarian serous cystadenocarcinoma(192;0.0406)|Epithelial(171;0.0797)	L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	AGTTAACATCCCTAATAGGAG	0.423000													61	30					0	0	0.00361006	0	0
ODZ2	57451	broad.mit.edu	37	5	167642177	167642177	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:167642177G>A	uc010jjd.2	+	21	3951	c.3951G>A	c.(3949-3951)TCG>TCA	p.S1317S	ODZ2_uc003lzr.3_Silent_p.S1087S|ODZ2_uc003lzt.3_Silent_p.S690S|ODZ2_uc010jje.2_Silent_p.S581S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CTGGGAATTCGGAAGTTGTGG	0.592000													14	108					0	0	0.00074312	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659850	172659851	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:172659850_172659851CC>TT	uc003mcm.1	-	2	872_873	c.696_697GG>AA	c.(694-699)GGGGAC>GGAAAC	p.D233N		NM_004387	NP_004378	P52952	NKX25_HUMAN	NK2 transcription factor related, locus 5	233	Ala/Pro-rich.				adult heart development|atrial cardiac muscle cell development|atrial septum morphogenesis|heart looping|hemopoiesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell apoptosis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|outflow tract septum morphogenesis|pharyngeal system development|positive regulation of calcium ion transport via voltage-gated calcium channel activity|positive regulation of cardioblast differentiation|positive regulation of cell proliferation|positive regulation of heart contraction|positive regulation of neuron differentiation|positive regulation of sodium ion transport|positive regulation of survival gene product expression|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of cardiac muscle contraction|right ventricular cardiac muscle tissue morphogenesis|septum secundum development|spleen development|thyroid gland development|vasculogenesis|ventricular septum morphogenesis		chromatin binding|protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GGCGCCGAGTCCCCTAGGCATG	0.619000													8	28					0	0	6.4e-05	0	0
HK3	3101	broad.mit.edu	37	5	176311076	176311076	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr5:176311076G>A	uc003mfa.2	-	14	2009	c.1917C>T	c.(1915-1917)GTC>GTT	p.V639V	HK3_uc003mez.2_Silent_p.V195V	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	639	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACAGACTCACGACATCTTGGC	0.602000													74	37					0	0	0.00361006	0	0
FARS2	10667	broad.mit.edu	37	6	5368854	5368854	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:5368854G>A	uc010jnv.1	+	2	387	c.51G>A	c.(49-51)GTG>GTA	p.V17V	FARS2_uc003mwr.2_Silent_p.V17V|FARS2_uc003mws.1_Silent_p.V17V	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	17					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	TCTACCTGGTGAGTAAGGCCA	0.567000													63	57					0	0	0.00361006	0	0
LY86	9450	broad.mit.edu	37	6	6589038	6589038	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:6589038G>A	uc003mwy.1	+	1	105	c.71G>A	c.(70-72)GGG>GAG	p.G24E	LOC285780_uc003mww.3_Intron|LOC285780_uc003mwx.2_Intron	NM_004271	NP_004262	O95711	LY86_HUMAN	MD-1, RP105-associated precursor	24					apoptosis|cell proliferation|humoral immune response|inflammatory response|innate immune response	extracellular space|plasma membrane					0	Ovarian(93;0.0377)					GGCGGCGGTGGGAAAGCCTGG	0.562000													15	108					0	0	0.000566183	0	0
RREB1	6239	broad.mit.edu	37	6	7230953	7230953	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:7230953C>T	uc003mxc.2	+	10	3011	c.2621C>T	c.(2620-2622)CCC>CTC	p.P874L	RREB1_uc003mxb.2_Missense_Mutation_p.P874L|RREB1_uc010jnx.2_Missense_Mutation_p.P874L	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	874					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CACAGGGGCCCCACCCAGCCT	0.647000													29	20					0	0	0.00178596	0	0
CAGE1	285782	broad.mit.edu	37	6	7365709	7365709	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:7365709C>T	uc003mxi.2	-	7	2417	c.1696G>A	c.(1696-1698)GAT>AAT	p.D566N	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Missense_Mutation_p.D484N|CAGE1_uc003mxk.1_Missense_Mutation_p.D484N	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	702											0	Ovarian(93;0.0418)					ACCAAGAAATCAAGCTCCTCA	0.358000													16	39					0	0	0.00316338	0	0
DSP	1832	broad.mit.edu	37	6	7583514	7583514	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:7583514G>A	uc003mxp.1	+	24	6298	c.6019G>A	c.(6019-6021)GAA>AAA	p.E2007K	DSP_uc003mxq.1_Missense_Mutation_p.E1408K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2007	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AGTTGCTTCTGAAATCCAGCC	0.448000													65	38					0	0	0.00361006	0	0
DSP	1832	broad.mit.edu	37	6	7584759	7584759	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:7584759G>A	uc003mxp.1	+	24	7543	c.7264G>A	c.(7264-7266)GAA>AAA	p.E2422K	DSP_uc003mxq.1_Missense_Mutation_p.E1823K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2422	Plectin 11.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CAACACTGAAGAAAATCTTAC	0.403000													99	59					0	0	0.00361006	0	0
MAK	4117	broad.mit.edu	37	6	10770427	10770427	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:10770427C>T	uc003mzl.2	-	12	1863	c.1634G>A	c.(1633-1635)GGA>GAA	p.G545E	SYCP2L_uc011dim.1_Intron|TMEM14B_uc010jos.1_RNA|MAK_uc010jot.2_RNA|MAK_uc010jou.2_RNA|MAK_uc003mzm.2_Missense_Mutation_p.G545E	NM_005906	NP_005897	P20794	MAK_HUMAN	male germ cell-associated kinase	545					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|cyclin-dependent protein kinase activity			breast(2)|skin(1)	3	Breast(50;0.107)|Ovarian(93;0.107)	all_hematologic(90;0.117)				AGGAATATATCCTGACTGATT	0.398000													87	51					0	0	0.00361006	0	0
TDP2	51567	broad.mit.edu	37	6	24654655	24654655	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:24654655G>A	uc003nej.2	-	5	646	c.621C>T	c.(619-621)AAC>AAT	p.N207N	TDP2_uc003nei.2_Silent_p.N95N|TDP2_uc010jpu.1_Silent_p.N207N	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	207					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						CACATAAAAGGTTTCTCATCA	0.264000								Direct_reversal_of_damage|Editing_and_processing_nucleases					16	76					0	0	0.000958276	0	0
HIST1H4K	8362	broad.mit.edu	37	6	27799023	27799023	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:27799023C>T	uc003njr.2	-	1	283	c.283G>A	c.(283-285)GGC>AGC	p.G95S		NM_003541	NP_003532	P62805	H4_HUMAN	histone cluster 1, H4k	95					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0						AGGGTGCGGCCCTGGCGCTTG	0.592000													21	32					0	0	0.00148497	0	0
GNL1	2794	broad.mit.edu	37	6	30515258	30515258	+	Silent	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:30515258C>A	uc003nqh.2	-	9	2177	c.1149G>T	c.(1147-1149)CGG>CGT	p.R383R	GNL1_uc011dmi.1_Silent_p.R180R|GNL1_uc011dmj.1_Silent_p.R381R|GNL1_uc011dmk.1_Silent_p.R38R	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	383	G.				response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						TCACGACTTTCCGCCCCACCA	0.517000													110	81					1.03447e-49	3.44692e-49	0.00361006	1	0
CDSN	1041	broad.mit.edu	37	6	31084770	31084770	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:31084770C>A	uc003nsm.1	-	2	649	c.622G>T	c.(622-624)GGC>TGC	p.G208C	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	208	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						ACGCTTTGGCCACTGCTGGAT	0.587000													13	95					3.32936e-07	1.08731e-06	0.00074312	1	0
SLC44A4	80736	broad.mit.edu	37	6	31843638	31843639	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:31843638_31843639CC>AA	uc010jti.2	-	4	298_299	c.232_233GG>TT	c.(232-234)GGG>TTG	p.G78L	SLC44A4_uc011dol.1_Missense_Mutation_p.G2L|SLC44A4_uc011dom.1_Missense_Mutation_p.G78L	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	78	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	CTTGTTCTCCCCCATGCCACAG	0.604000													14	681					0	0	6.4e-05	0	0
SKIV2L	6499	broad.mit.edu	37	6	31935527	31935528	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:31935527_31935528CC>AA	uc003nyn.1	+	22	3008_3009	c.2619_2620CC>AA	c.(2617-2622)ACCCTG>ACAATG	p.L874M	SKIV2L_uc011dou.1_Missense_Mutation_p.L716M|SKIV2L_uc011dov.1_Missense_Mutation_p.L681M	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	874						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TATTCACAACCCTGGTCTTGTG	0.579000													14	862					0	0	6.4e-05	0	0
TULP1	7287	broad.mit.edu	37	6	35480623	35480623	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:35480623C>T	uc003okv.3	-	1	25	c.13G>A	c.(13-15)GAT>AAT	p.D5N	TULP1_uc003okw.3_Missense_Mutation_p.D5N	NM_003322	NP_003313	O00294	TULP1_HUMAN	tubby like protein 1	5					dendrite development|eye photoreceptor cell development|phagocytosis|photoreceptor cell maintenance|positive regulation of phagocytosis	cell junction|cytoplasm|extracellular region|photoreceptor inner segment|photoreceptor outer segment|synapse	actin filament binding|phosphatidylinositol-4,5-bisphosphate binding			ovary(2)|central_nervous_system(1)	3						AGGGTTTCATCCCGCAGAGGC	0.567000													25	45					0	0	0.00106085	0	0
PNPLA1	285848	broad.mit.edu	37	6	36262129	36262129	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:36262129G>A	uc010jwf.2	+	4	667	c.667G>A	c.(667-669)GAG>AAG	p.E223K	PNPLA1_uc003olw.1_Missense_Mutation_p.E128K|PNPLA1_uc010jwe.1_Missense_Mutation_p.E137K	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	223					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						GTTCTCCCTGGAGAACATCGC	0.612000													40	70					0	0	0.00321405	0	0
BTBD9	114781	broad.mit.edu	37	6	38312841	38312841	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:38312841T>C	uc003ooa.3	-	8	1759	c.1183A>G	c.(1183-1185)ACA>GCA	p.T395A	BTBD9_uc003ony.3_Missense_Mutation_p.T327A|BTBD9_uc010jwv.2_Missense_Mutation_p.T356A|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.T395A	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	395					cell adhesion						0						TTGTTCACTGTGTTGTGAGTC	0.368000													19	126					0	0	0.00188189	0	0
UNC5CL	222643	broad.mit.edu	37	6	41001787	41001787	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:41001787G>A	uc003opi.2	-	3	608	c.519C>T	c.(517-519)TTC>TTT	p.F173F	UNC5CL_uc010jxe.1_Silent_p.F173F	NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	173	ZU5.|Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AAGGCTTCAGGAAGGAGGCCC	0.617000													7	44					0	0	0.00307968	0	0
FRS3	10817	broad.mit.edu	37	6	41740577	41740577	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:41740577G>A	uc003orc.1	-	5	618	c.374C>T	c.(373-375)CCC>CTC	p.P125L		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	125					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AAGCTCAGCGGGGTGGCTATT	0.488000													78	70					0	0	0.00361006	0	0
ZNF318	24149	broad.mit.edu	37	6	43322813	43322813	+	Silent	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:43322813T>A	uc003oux.2	-	4	2337	c.2259A>T	c.(2257-2259)CCA>CCT	p.P753P	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	753					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CAGCAGTGTGTGGAAGTCTAA	0.532000													41	113					0	0	0.00222228	0	0
RSPH9	221421	broad.mit.edu	37	6	43638590	43638591	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:43638590_43638591GG>AA	uc003ovw.1	+	5	761_762	c.735_736GG>AA	c.(733-738)CCGGGC>CCAAGC	p.G246S	RSPH9_uc003ovx.1_Missense_Mutation_p.G263K	NM_152732	NP_689945	Q9H1X1	RSPH9_HUMAN	radial spoke head 9 homolog	246					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton				upper_aerodigestive_tract(1)|skin(1)	2						TGCTCTGGCCGGGCCTCACCTT	0.594000									Kartagener_syndrome				61	37					0	0	6.4e-05	0	0
GPR115	221393	broad.mit.edu	37	6	47675986	47675986	+	Silent	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:47675986A>G	uc003oza.1	+	3	378	c.120A>G	c.(118-120)GAA>GAG	p.E40E	GPR115_uc003oyz.1_Silent_p.E97E|GPR115_uc003ozb.1_Silent_p.E38E	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	40	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						AAAGCCCTGAAGGGAAACCCA	0.448000													17	29					0	0	0.00152264	0	0
EPHA7	2045	broad.mit.edu	37	6	94066482	94066482	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:94066482C>T	uc003poe.2	-	5	1518	c.1277G>A	c.(1276-1278)CGA>CAA	p.R426Q	EPHA7_uc003pof.2_Missense_Mutation_p.R426Q|EPHA7_uc011eac.1_Missense_Mutation_p.R426Q	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	426	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R426*(1)		lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CCTCTGGGATCGGCTTAAGTC	0.418000													28	10					0	0	0.00209593	0	0
RFX6	222546	broad.mit.edu	37	6	117245947	117245947	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:117245947G>A	uc003pxm.2	+	15	1734	c.1671G>A	c.(1669-1671)AAG>AAA	p.K557K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	557					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AGTATATGAAGAATTCAGGTA	0.308000													12	5					0	0	0.00136819	0	0
RFX6	222546	broad.mit.edu	37	6	117246782	117246782	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:117246782C>T	uc003pxm.2	+	16	1908	c.1845C>T	c.(1843-1845)CAC>CAT	p.H615H		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	615					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CTGCTCTGCACCAGTTCCCTG	0.542000													16	5					0	0	0.00400662	0	0
SYNE1	23345	broad.mit.edu	37	6	152621837	152621837	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:152621837G>A	uc010kiw.2	-	93	18223	c.17621C>T	c.(17620-17622)TCC>TTC	p.S5874F	SYNE1_uc010kiv.2_Missense_Mutation_p.S398F|SYNE1_uc003qos.3_Missense_Mutation_p.S398F|SYNE1_uc003qot.3_Missense_Mutation_p.S5803F|SYNE1_uc003qou.3_Missense_Mutation_p.S5874F|SYNE1_uc010kiy.1_Intron	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5874	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGGTGGAGAGGAAATCTCACT	0.532000										HNSCC(10;0.0054)			32	7					0	0	0.0024448	0	0
TIAM2	26230	broad.mit.edu	37	6	155469324	155469324	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:155469324G>A	uc003qqb.2	+	9	3157	c.1884G>A	c.(1882-1884)GGG>GGA	p.G628G	TIAM2_uc003qqe.2_Silent_p.G628G|TIAM2_uc010kjj.2_Silent_p.G161G|TIAM2_uc003qqf.2_5'UTR|TIAM2_uc011efl.1_5'Flank|TIAM2_uc003qqg.2_5'Flank	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	628	Potential.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGAAGCATGGGAAAGAGGACA	0.507000													56	20					0	0	0.00361006	0	0
TCP10	6953	broad.mit.edu	37	6	167786842	167786842	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:167786842G>A	uc003qvv.1	-	8	1008	c.796C>T	c.(796-798)CCT>TCT	p.P266S	TCP10_uc003qvu.2_Intron	NM_004610	NP_004601	Q12799	TCP10_HUMAN	t-complex 10	293						cytosol				breast(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;4.05e-20)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)|GBM - Glioblastoma multiforme(31;0.0386)		GGGTTTACAGGAAGATTCTGC	0.483000													14	31					0	0	0.000566183	0	0
ZDHHC4	55146	broad.mit.edu	37	7	6624884	6624884	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:6624884T>C	uc003sqi.2	+	8	1092	c.734T>C	c.(733-735)CTT>CCT	p.L245P	ZDHHC4_uc003sql.2_Missense_Mutation_p.L245P|ZDHHC4_uc003sqh.2_Missense_Mutation_p.L245P|ZDHHC4_uc003sqj.2_Missense_Mutation_p.L245P|ZDHHC4_uc003sqk.2_Missense_Mutation_p.L245P|ZDHHC4_uc003sqm.2_Missense_Mutation_p.L245P	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	245						integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		ACGGTCTTTCTTATTCAGGTA	0.383000													27	35					0	0	0.00178596	0	0
ABCB5	340273	broad.mit.edu	37	7	20683112	20683112	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:20683112G>A	uc010kuh.2	+	7	772	c.535G>A	c.(535-537)GGA>AGA	p.G179R		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	365	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TGATGGTATTGGAGATAAGAT	0.378000													28	186					0	0	0.0024448	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35163625	35163625	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:35163625T>G	uc003teq.1	-	13	1578	c.471A>C	c.(469-471)TTA>TTC	p.L157F	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						CTGAAACGCCTAAGATTTTAG	0.229000													25	128					0	0	0.0024448	0	0
GLI3	2737	broad.mit.edu	37	7	42005858	42005859	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:42005858_42005859CC>TT	uc011kbh.1	-	15	2903_2904	c.2812_2813GG>AA	c.(2812-2814)GGA>AAA	p.G938K	GLI3_uc011kbg.1_Missense_Mutation_p.G879K	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	938					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CGGCGGCCCTCCTGTGGCAGCC	0.723000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				20	30					0	0	6.4e-05	0	0
GCK	2645	broad.mit.edu	37	7	44191917	44191918	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:44191917_44191918GG>AA	uc003tkl.2	-	3	785_786	c.315_316CC>TT	c.(313-318)CACCAG>CATTAG	p.Q106*	GCK_uc003tkj.1_Nonsense_Mutation_p.Q105*|GCK_uc003tkk.1_Nonsense_Mutation_p.Q107*	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	106					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						GAGTACATCTGGTGTTTGGTCT	0.634000													176	356					0	0	6.4e-05	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578652	44578652	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:44578652C>T	uc003tlb.2	-	2	1400	c.1344G>A	c.(1342-1344)CAG>CAA	p.Q448Q	NPC1L1_uc003tlc.2_Silent_p.Q448Q|NPC1L1_uc011kbw.1_Silent_p.Q448Q|NPC1L1_uc003tld.2_Silent_p.Q448Q	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	448	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GCAGCCTCTCCTGCAGCTCTA	0.602000													19	24					0	0	0.000958276	0	0
ADCY1	107	broad.mit.edu	37	7	45725619	45725619	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:45725619C>T	uc003tne.3	+	13	2150	c.2132C>T	c.(2131-2133)TCG>TTG	p.S711L		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	711					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GTGGTCCTTTCGTCTGGGGGC	0.657000													38	18					0	0	0.000953801	0	0
ABCA13	154664	broad.mit.edu	37	7	48335455	48335456	+	Missense_Mutation	DNP	GT	TG	TG			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:48335455_48335456GT>TG	uc003toq.2	+	21	9139_9140	c.9114_9115GT>TG	c.(9112-9117)TTGTAC>TTTGAC	p.3038_3039LY>FD	ABCA13_uc010kys.1_Missense_Mutation_p.112_113LY>FD	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3038_3039					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AGCAGCACTTGTACATGTATGC	0.485000													86	201					0	0	6.4e-05	0	0
ABCA13	154664	broad.mit.edu	37	7	48559759	48559759	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:48559759C>T	uc003toq.2	+	53	13945	c.13920C>T	c.(13918-13920)TTC>TTT	p.F4640F	ABCA13_uc010kys.1_Silent_p.F1715F|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Silent_p.F370F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4640					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CCCACAACTTCGGCATTGATT	0.463000													23	49					0	0	0.00332997	0	0
COBL	23242	broad.mit.edu	37	7	51096349	51096349	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:51096349G>A	uc003tpr.3	-	10	2629	c.2444C>T	c.(2443-2445)TCG>TTG	p.S815L	COBL_uc003tps.2_Missense_Mutation_p.S872L|COBL_uc011kcl.1_Missense_Mutation_p.S815L|COBL_uc003tpp.3_Missense_Mutation_p.S601L|COBL_uc003tpq.3_Missense_Mutation_p.S756L|COBL_uc003tpo.3_Missense_Mutation_p.S357L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	815										skin(3)|ovary(2)	5	Glioma(55;0.08)					CTGCTGGGGCGATATTGGCTT	0.657000													17	49					0	0	0.000566183	0	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													3	82					0	0	6.4e-05	0	0
ZNF479	90827	broad.mit.edu	37	7	57187836	57187836	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:57187836C>T	uc010kzo.2	-	5	1557	c.1286G>A	c.(1285-1287)AGA>AAA	p.R429K		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	429	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			AGTATGAATTCTCTTGTGGTC	0.433000													6	61					0	0	0.000673444	0	0
C7orf42	55069	broad.mit.edu	37	7	66413654	66413655	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:66413654_66413655CC>TT	uc003tvk.2	+	4	833_834	c.569_570CC>TT	c.(568-570)GCC>GTT	p.A190V	C7orf42_uc010lah.2_RNA|C7orf42_uc003tvl.2_Missense_Mutation_p.A190V	NM_017994	NP_060464	Q9NWD8	CG042_HUMAN	hypothetical protein LOC55069	190	Helical; (Potential).					integral to membrane				ovary(1)	1						ACCCTCACGGCCAGCCCTGGGG	0.599000													18	22					0	0	6.4e-05	0	0
TYW1	55253	broad.mit.edu	37	7	66703421	66703421	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:66703421C>T	uc003tvn.2	+	16	2253	c.2104C>T	c.(2104-2106)CAC>TAC	p.H702Y	TYW1_uc010lai.2_RNA|TYW1_uc011kef.1_Missense_Mutation_p.H316Y|PMS2L4_uc003tvo.2_Intron	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	702					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				CAGAACTCCTCACTGGGCATT	0.428000													57	48					0	0	0.00361006	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72338392	72338392	+	RNA	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:72338392G>A	uc010lal.1	-	1		c.1264C>T				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						GCCTCCCGGGGGGAAGTCTCA	0.577000													28	29					0	0	0.000720815	0	0
WBSCR28	135886	broad.mit.edu	37	7	73280093	73280093	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:73280093G>A	uc003tzk.2	+	3	724	c.688G>A	c.(688-690)GAG>AAG	p.E230K	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_Missense_Mutation_p.E129K	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	230						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				CGAGGCCCAGGAGGTTGAACC	0.617000													124	94					0	0	0.00361006	0	0
ZP3	7784	broad.mit.edu	37	7	76063364	76063364	+	Silent	SNP	C	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:76063364C>G	uc003ufd.3	+	5	733	c.723C>G	c.(721-723)GTC>GTG	p.V241V	ZP3_uc003ufc.3_Silent_p.V190V|ZP3_uc003ufe.2_Silent_p.V149V	NM_001110354	NP_001103824	P21754	ZP3_HUMAN	zona pellucida glycoprotein 3 isoform 1	241	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|blastocyst formation|egg coat formation|humoral immune response mediated by circulating immunoglobulin|intracellular protein transport|negative regulation of binding of sperm to zona pellucida|negative regulation of transcription, DNA-dependent|oocyte development|phosphatidylinositol-mediated signaling|positive regulation of acrosomal vesicle exocytosis|positive regulation of acrosome reaction|positive regulation of antral ovarian follicle growth|positive regulation of calcium ion import|positive regulation of calcium ion transport via store-operated calcium channel activity|positive regulation of humoral immune response|positive regulation of interferon-gamma production|positive regulation of interleukin-4 production|positive regulation of leukocyte migration|positive regulation of ovarian follicle development|positive regulation of phosphatidylinositol biosynthetic process|positive regulation of protein kinase activity|positive regulation of protein kinase B signaling cascade|positive regulation of T cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of type IV hypersensitivity|protein kinase C signaling cascade	endoplasmic reticulum|extracellular space|Golgi apparatus|integral to membrane|multivesicular body|outer acrosomal membrane|perinuclear region of cytoplasm|plasma membrane|proteinaceous extracellular matrix	acrosin binding|manganese ion transmembrane transporter activity|receptor activity|sugar binding				0						GCTGTCTTGTCGACGGTCTCA	0.363000													41	96					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82585272	82585272	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:82585272C>T	uc003uhx.2	-	5	5286	c.4997G>A	c.(4996-4998)CGA>CAA	p.R1666Q	PCLO_uc003uhv.2_Missense_Mutation_p.R1666Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1597					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGTTTTAAATCGGCGTAGCCC	0.373000													73	71					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82785179	82785180	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:82785179_82785180CC>TT	uc003uhx.2	-	2	1066_1067	c.777_778GG>AA	c.(775-780)CAGGGT>CAAAGT	p.G260S	PCLO_uc003uhv.2_Missense_Mutation_p.G260S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	260	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGGTAGGACCCTGAATTGGCT	0.470000													28	36					0	0	6.4e-05	0	0
RUNDC3B	154661	broad.mit.edu	37	7	87399955	87399955	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:87399955G>A	uc003ujb.2	+	8	1150	c.739G>A	c.(739-741)GAA>AAA	p.E247K	RUNDC3B_uc011khd.1_Missense_Mutation_p.E230K|RUNDC3B_uc011khe.1_Missense_Mutation_p.E230K|RUNDC3B_uc003ujc.2_Missense_Mutation_p.E230K|RUNDC3B_uc003ujd.2_Missense_Mutation_p.E152K	NM_138290	NP_612147	Q96NL0	RUN3B_HUMAN	RUN domain containing 3B isoform a	247										skin(1)	1	Esophageal squamous(14;0.00164)					CAGTGGTAGCGAAAGCAGTAC	0.398000													25	15					0	0	0.00278032	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92826826	92826826	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:92826826G>A	uc003umm.2	-	5	1133	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	HEPACAM2_uc003uml.2_Silent_p.F358F|HEPACAM2_uc010lff.2_Silent_p.F358F|HEPACAM2_uc011khy.1_Silent_p.F393F	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	370	Helical; (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TTTTCCATAGGAAGAGAAGAC	0.303000													31	61					0	0	0.00209593	0	0
EPO	2056	broad.mit.edu	37	7	100320699	100320699	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:100320699C>T	uc003uwi.2	+	5	706	c.525C>T	c.(523-525)TTC>TTT	p.F175F	EPO_uc011kkc.1_Silent_p.F174F	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	175					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	ACTCCAATTTCCTCCGGGGAA	0.572000													94	60					0	0	0.00361006	0	0
ZNHIT1	10467	broad.mit.edu	37	7	100866992	100866992	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:100866992C>T	uc003uye.2	+	4	804	c.312C>T	c.(310-312)GCC>GCT	p.A104A	ZNHIT1_uc003uyf.2_RNA	NM_006349	NP_006340	O43257	ZNHI1_HUMAN	zinc finger, HIT domain containing 1	104							metal ion binding|protein binding			large_intestine(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					ACCTGACGGCCTGTGCGGGAC	0.667000													34	33					0	0	0.00283554	0	0
CUX1	1523	broad.mit.edu	37	7	101845040	101845040	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:101845040G>A	uc003uyx.3	+	18	2501	c.2463G>A	c.(2461-2463)AAG>AAA	p.K821K	CUX1_uc003uys.3_Silent_p.K832K|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	821					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GTGCCTGGAAGGACCACTGGT	0.672000													8	26					0	0	0.000274275	0	0
LAMB4	22798	broad.mit.edu	37	7	107674720	107674720	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:107674720C>T	uc010ljo.1	-	31	4835	c.4751G>A	c.(4750-4752)GGA>GAA	p.G1584E	LAMB4_uc003vey.2_Missense_Mutation_p.G1584E|LAMB4_uc010ljp.1_Missense_Mutation_p.G553E	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1584	Potential.|Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GTTTGCCCGTCCTTGAGTGAT	0.333000													90	67					0	0	0.00361006	0	0
CAV1	857	broad.mit.edu	37	7	116166591	116166591	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:116166591A>G	uc003vif.1	+	2	321	c.43A>G	c.(43-45)ACC>GCC	p.T15A	CAV1_uc010lkd.1_5'UTR|CAV1_uc010lke.1_5'UTR|CAV1_uc003vig.1_RNA|CAV1_uc003vih.2_5'UTR|CAV1_uc010lkf.1_5'UTR	NM_001753	NP_001744	Q03135	CAV1_HUMAN	caveolin 1	15	Cytoplasmic (Potential).				blood coagulation|calcium ion transport|caveola assembly|cellular response to starvation|cholesterol homeostasis|cytosolic calcium ion homeostasis|inactivation of MAPK activity|interspecies interaction between organisms|leukocyte migration|lipid storage|maintenance of protein location in cell|mammary gland involution|membrane depolarization|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of endothelial cell proliferation|negative regulation of epithelial cell differentiation|negative regulation of nitric oxide biosynthetic process|negative regulation of peptidyl-serine phosphorylation|negative regulation of protein binding|negative regulation of transcription from RNA polymerase II promoter|nitric oxide homeostasis|nitric oxide metabolic process|positive regulation of calcium ion transport into cytosol|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of metalloenzyme activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of vasoconstriction|protein homooligomerization|receptor internalization|regulation of blood coagulation|regulation of fatty acid metabolic process|regulation of nitric-oxide synthase activity|regulation of smooth muscle contraction|response to calcium ion|response to estrogen stimulus|response to hypoxia|response to progesterone stimulus|skeletal muscle tissue development|T cell costimulation|triglyceride metabolic process|vasculogenesis|vesicle organization	apical plasma membrane|basolateral plasma membrane|caveola|caveola|cytosol|endoplasmic reticulum|endosome|Golgi membrane|lipid particle|perinuclear region of cytoplasm	cholesterol binding|nitric-oxide synthase binding|peptidase activator activity|protein binding|protein complex scaffold|receptor binding				0	all_epithelial(6;1.42e-06)|Lung NSC(10;0.0056)|all_lung(10;0.00609)		STAD - Stomach adenocarcinoma(10;0.00878)			ACATCTCTACACCGTTCCCAT	0.592000											OREG0018273	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	29					0	0	0.00209593	0	0
MET	4233	broad.mit.edu	37	7	116339776	116339776	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:116339776C>T	uc003vij.2	+	2	825	c.638C>T	c.(637-639)TCG>TTG	p.S213L	MET_uc010lkh.2_Missense_Mutation_p.S213L|MET_uc011knc.1_Missense_Mutation_p.S213L|MET_uc011knd.1_Missense_Mutation_p.S213L|MET_uc011kne.1_Missense_Mutation_p.S213L|MET_uc011knf.1_Missense_Mutation_p.S213L|MET_uc011kng.1_Missense_Mutation_p.S213L|MET_uc011knh.1_Missense_Mutation_p.S213L|MET_uc011kni.1_Missense_Mutation_p.S213L|MET_uc003vii.1_Missense_Mutation_p.S232L|MET_uc010lkg.2_Missense_Mutation_p.S213L|MET_uc011kmz.1_Missense_Mutation_p.S213L|MET_uc011kna.1_Missense_Mutation_p.S213L|MET_uc011knb.1_Missense_Mutation_p.S213L	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	213	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CCATTGCATTCGATATCAGTG	0.403000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				64	112					0	0	0.00361006	0	0
IQUB	154865	broad.mit.edu	37	7	123092855	123092855	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:123092855C>T	uc003vkn.2	-	13	2895	c.2318G>A	c.(2317-2319)TGG>TAG	p.W773*	IQUB_uc011kny.1_Nonsense_Mutation_p.W106*|IQUB_uc003vko.2_Nonsense_Mutation_p.W773*|IQUB_uc010lkt.2_RNA	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	773										ovary(3)|large_intestine(1)	4						GTGATACTTCCATCTGATCTC	0.393000													37	30					0	0	0.00148497	0	0
IQUB	154865	broad.mit.edu	37	7	123150081	123150081	+	Missense_Mutation	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:123150081C>A	uc003vkn.2	-	3	983	c.406G>T	c.(406-408)GTA>TTA	p.V136L	IQUB_uc003vko.2_Missense_Mutation_p.V136L|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.V136L|IQUB_uc003vkq.2_Missense_Mutation_p.V136L	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	136	Ubiquitin-like.									ovary(3)|large_intestine(1)	4						GGAATAAGTACAACTTTTACT	0.308000													82	196					2.43516e-34	8.08339e-34	0.00361006	1	0
SPAM1	6677	broad.mit.edu	37	7	123593820	123593820	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:123593820G>A	uc003vld.2	+	4	598	c.196G>A	c.(196-198)GAG>AAG	p.E66K	SPAM1_uc003vle.2_Missense_Mutation_p.E66K|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.E66K|SPAM1_uc010lku.2_Missense_Mutation_p.E66K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	66					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	AAAATTTGATGAGCCACTAGA	0.438000													18	34					0	0	0.00074312	0	0
GRM8	2918	broad.mit.edu	37	7	126544086	126544086	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:126544086G>A	uc003vlr.2	-	4	1269	c.958C>T	c.(958-960)CAG>TAG	p.Q320*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.Q320*|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Nonsense_Mutation_p.Q41*	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	320	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCCTCTTGCTGATAGACAGGT	0.423000										HNSCC(24;0.065)			33	69					0	0	0.00361006	0	0
AHCYL2	23382	broad.mit.edu	37	7	129019571	129019571	+	Silent	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:129019571T>C	uc011kov.1	+	2	510	c.456T>C	c.(454-456)TCT>TCC	p.S152S	AHCYL2_uc003vot.2_Silent_p.S151S|AHCYL2_uc003vov.2_Silent_p.S49S|AHCYL2_uc011kow.1_Silent_p.S50S|AHCYL2_uc011kox.1_Silent_p.S49S	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	152					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						CTCAGTCATCTACTGACAGCT	0.473000													32	28					0	0	0.000953801	0	0
LRGUK	136332	broad.mit.edu	37	7	133943125	133943126	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:133943125_133943126CC>TT	uc003vrm.1	+	19	2331_2332	c.2315_2316CC>TT	c.(2314-2316)GCC>GTT	p.A772V		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	772							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						GGATCAGGAGCCAGTGACAGTG	0.347000													49	38					0	0	6.4e-05	0	0
AKR1B15	441282	broad.mit.edu	37	7	134254185	134254185	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:134254185G>A	uc011kpr.1	+	5	638	c.339G>A	c.(337-339)GAG>GAA	p.E113E	AKR1B15_uc003vrt.2_Silent_p.E85E|AKR1B15_uc011kps.1_Silent_p.E85E	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	113							oxidoreductase activity			ovary(1)	1						CTTTCTTTGAGAGACCCCTTG	0.463000													64	53					0	0	0.00361006	0	0
CHRM2	1129	broad.mit.edu	37	7	136699707	136699707	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:136699707C>T	uc003vtf.1	+	4	718	c.95C>T	c.(94-96)TCC>TTC	p.S32F	CHRM2_uc003vtg.1_Missense_Mutation_p.S32F|CHRM2_uc003vtj.1_Missense_Mutation_p.S32F|CHRM2_uc003vtk.1_Missense_Mutation_p.S32F|CHRM2_uc003vtl.1_Missense_Mutation_p.S32F|CHRM2_uc003vtm.1_Missense_Mutation_p.S32F|CHRM2_uc003vti.1_Missense_Mutation_p.S32F|CHRM2_uc003vto.1_Missense_Mutation_p.S32F|CHRM2_uc003vtn.1_Missense_Mutation_p.S32F|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	32	Helical; Name=1; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	GTGGCTGGATCCCTCAGTTTG	0.423000													30	84					0	0	0.00106085	0	0
CHRM2	1129	broad.mit.edu	37	7	136700068	136700068	+	Silent	SNP	C	T	T	rs148163637	by1000genomes	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:136700068C>T	uc003vtf.1	+	4	1079	c.456C>T	c.(454-456)TTC>TTT	p.F152F	CHRM2_uc003vtg.1_Silent_p.F152F|CHRM2_uc003vtj.1_Silent_p.F152F|CHRM2_uc003vtk.1_Silent_p.F152F|CHRM2_uc003vtl.1_Silent_p.F152F|CHRM2_uc003vtm.1_Silent_p.F152F|CHRM2_uc003vti.1_Silent_p.F152F|CHRM2_uc003vto.1_Silent_p.F152F|CHRM2_uc003vtn.1_Silent_p.F152F|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	152	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TCCTCTCTTTCATCCTCTGGG	0.498000													50	91					0	0	0.00361006	0	0
BRAF	673	broad.mit.edu	37	7	140453134	140453134	+	Missense_Mutation	SNP	T	C	C	rs121913377		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:140453134T>C	uc003vwc.3	-	15	1862	c.1801A>G	c.(1801-1803)AAA>GAA	p.K601E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	601	Protein kinase.		K -> Q (in CFC syndrome).|K -> E (in colorectal cancer).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.K601E(47)|p.V600_K601>E(8)|p.K601N(7)|p.K601del(4)|p.K601Q(3)|p.T599_R603>I(2)|p.V600_W604del(1)|p.K601K(1)|p.K601L(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.K601I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CATCGAGATTTCACTGTAGCT	0.368000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				55	49					0	0	0.00361006	0	0
BRAF	673	broad.mit.edu	37	7	140501337	140501337	+	Missense_Mutation	SNP	T	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:140501337T>G	uc003vwc.3	-	6	796	c.735A>C	c.(733-735)TTA>TTC	p.L245F		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	245	Phorbol-ester/DAG-type.		L -> F (in CFC syndrome).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CACAAAATGCTAAGGTGAAAA	0.373000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				17	17					0	0	0.000566183	0	0
MGAM	8972	broad.mit.edu	37	7	141797419	141797419	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:141797419C>T	uc003vwy.2	+	43	5085	c.5031C>T	c.(5029-5031)TTC>TTT	p.F1677F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1677	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTGCATATTTCCCTAGAGCCC	0.299000													42	32					0	0	0.00361006	0	0
KCNH2	3757	broad.mit.edu	37	7	150648062	150648062	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:150648062C>T	uc003wic.2	-	8	2105	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	KCNH2_uc003wib.2_Missense_Mutation_p.E358K|KCNH2_uc011kux.1_Missense_Mutation_p.E602K|KCNH2_uc003wid.2_Missense_Mutation_p.E358K|KCNH2_uc003wie.2_Missense_Mutation_p.E698K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	698	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	AAGTACTCCTCGAGGCGCTGG	0.652000													20	34					0	0	0.00278032	0	0
FASTK	10922	broad.mit.edu	37	7	150775018	150775018	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:150775018G>A	uc003wix.1	-	5	1085	c.987C>T	c.(985-987)CCC>CCT	p.P329P	uc011kvf.1_5'Flank|FASTK_uc003wiw.1_Silent_p.P90P|FASTK_uc003wiy.1_Silent_p.P188P|FASTK_uc003wiz.1_Silent_p.P302P|FASTK_uc003wja.1_3'UTR	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	329					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		GGGCTCTGAAGGGCAGGCACC	0.592000													19	54					0	0	0.00121646	0	0
CRYGN	155051	broad.mit.edu	37	7	151135093	151135093	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:151135093G>A	uc003wke.2	-	2	355	c.259C>T	c.(259-261)CCT>TCT	p.P87S	CRYGN_uc003wkf.2_Missense_Mutation_p.P87S|CRYGN_uc003wkg.2_RNA|CRYGN_uc010lqd.1_5'Flank	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	87	Beta/gamma crystallin 'Greek key' 2.										0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATTCCTACAGGCCGACAGGAG	0.637000													30	55					0	0	0.00375469	0	0
PRKAG2	51422	broad.mit.edu	37	7	151478268	151478268	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:151478268C>T	uc003wkk.2	-	3	1047	c.436G>A	c.(436-438)GGC>AGC	p.G146S	PRKAG2_uc003wkj.2_Missense_Mutation_p.G102S|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Missense_Mutation_p.G146S	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	146					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		AACCTGATGCCCCCGGGCGAG	0.592000													26	83					0	0	0.00127121	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931004	157931004	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:157931004G>A	uc003wno.2	-	7	1235	c.1114C>T	c.(1114-1116)CGT>TGT	p.R372C	PTPRN2_uc003wnp.2_Missense_Mutation_p.R355C|PTPRN2_uc003wnq.2_Missense_Mutation_p.R372C|PTPRN2_uc003wnr.2_Missense_Mutation_p.R334C|PTPRN2_uc011kwa.1_Missense_Mutation_p.R395C	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	372	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTGTCTCCACGGAGGGTGGCC	0.677000													17	32					0	0	0.000958276	0	0
NCAPG2	54892	broad.mit.edu	37	7	158473481	158473481	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr7:158473481T>C	uc003wnv.1	-	10	1097	c.952A>G	c.(952-954)AAA>GAA	p.K318E	NCAPG2_uc010lqu.1_Missense_Mutation_p.K110E|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Missense_Mutation_p.K318E|NCAPG2_uc011kwe.1_Missense_Mutation_p.K318E	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	318					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		TGCCGAACTTTCTTTTGATGG	0.328000													37	80					0	0	0.00195071	0	0
RP1L1	94137	broad.mit.edu	37	8	10466326	10466327	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:10466326_10466327CC>AA	uc003wtc.2	-	4	5510_5511	c.5281_5282GG>TT	c.(5281-5283)GGG>TTG	p.G1761L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1761					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTCTGCCTCCCCGAGTTTGGGA	0.624000													10	233					0	0	6.4e-05	0	0
CTSB	1508	broad.mit.edu	37	8	11705270	11705270	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:11705270G>C	uc003wum.2	-	9	918	c.594C>G	c.(592-594)TGC>TGG	p.C198W	CTSB_uc003wul.2_Missense_Mutation_p.C135W|CTSB_uc011kxl.1_Missense_Mutation_p.C119W|CTSB_uc003wun.2_Missense_Mutation_p.C198W|CTSB_uc003wuo.2_Missense_Mutation_p.C198W|CTSB_uc003wup.2_Missense_Mutation_p.C198W|CTSB_uc003wuq.2_Missense_Mutation_p.C198W|CTSB_uc010lsc.2_Missense_Mutation_p.C74W|CTSB_uc003wur.2_Missense_Mutation_p.C198W|CTSB_uc003wus.1_Missense_Mutation_p.C198W|CTSB_uc003wut.1_Missense_Mutation_p.C198W|CTSB_uc003wuu.2_Missense_Mutation_p.C54W	NM_147780	NP_680090	P07858	CATB_HUMAN	cathepsin B preproprotein	198					proteolysis|regulation of apoptosis|regulation of catalytic activity	lysosome|melanosome	cysteine-type endopeptidase activity				0	all_epithelial(15;0.205)		STAD - Stomach adenocarcinoma(15;0.00546)	COAD - Colon adenocarcinoma(149;0.184)		CCTCCCCCGTGCATGGGGGCC	0.627000													32	129					0	0	0.00375469	0	0
MTMR7	9108	broad.mit.edu	37	8	17206511	17206511	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:17206511C>T	uc003wxm.2	-	5	787	c.548G>A	c.(547-549)CGG>CAG	p.R183Q	MTMR7_uc003wxn.2_5'UTR	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	183	Myotubularin phosphatase.						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CCGTCTACTCCGGAATTTGGA	0.423000													80	96					0	0	0.00361006	0	0
ADAM7	8756	broad.mit.edu	37	8	24346676	24346676	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:24346676C>T	uc003xeb.2	+	12	1209	c.1096C>T	c.(1096-1098)CCT>TCT	p.P366S	ADAM7_uc003xec.2_Missense_Mutation_p.P138S	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	366	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTCTAGCATTCCTGCACTGAA	0.348000													31	42					0	0	0.00327116	0	0
STMN4	81551	broad.mit.edu	37	8	27098674	27098674	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:27098674G>A	uc003xfk.2	-	4	329	c.215C>T	c.(214-216)TCC>TTC	p.S72F	STMN4_uc003xfj.2_Missense_Mutation_p.S99F|STMN4_uc011lai.1_Missense_Mutation_p.S99F|STMN4_uc011laj.1_Missense_Mutation_p.S63F|STMN4_uc011lak.1_Missense_Mutation_p.S99F|STMN4_uc010luo.2_Missense_Mutation_p.S72F			Q9H169	STMN4_HUMAN	RecName: Full=Stathmin-4; AltName: Full=Stathmin-like protein B3;          Short=RB3;	72					intracellular signal transduction					large_intestine(1)|pancreas(1)	2		Ovarian(32;0.00167)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0214)|Epithelial(17;9.82e-10)|Colorectal(74;0.142)		CCCATCAAAGGAGGGTGGCTT	0.557000													69	67					0	0	0.00361006	0	0
SCARA5	286133	broad.mit.edu	37	8	27737098	27737098	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:27737098G>A	uc003xgj.2	-	8	1779	c.1339C>T	c.(1339-1341)CGA>TGA	p.R447*	SCARA5_uc010luz.2_Nonsense_Mutation_p.R222*	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	447	SRCR.|Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		TGCCCGAATCGAGCTGTGCGG	0.527000													70	88					0	0	0.00361006	0	0
TEX15	56154	broad.mit.edu	37	8	30704952	30704952	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:30704952C>T	uc003xil.2	-	1	1582	c.1582G>A	c.(1582-1584)GAA>AAA	p.E528K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	528										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CTCAAAATTTCTATATTGTGG	0.318000													35	57					0	0	0.00428921	0	0
DUSP26	78986	broad.mit.edu	37	8	33454889	33454889	+	Missense_Mutation	SNP	C	T	T	rs11545082		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:33454889C>T	uc003xjp.2	-	2	478	c.145G>A	c.(145-147)GAG>AAG	p.E49K	DUSP26_uc003xjq.2_Missense_Mutation_p.E49K	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	49						Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		AGGAGCCGCTCCAACTCGAAG	0.582000													22	41					0	0	0.00188189	0	0
UNC5D	137970	broad.mit.edu	37	8	35583765	35583765	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:35583765G>A	uc003xjr.1	+	10	1727	c.1399G>A	c.(1399-1401)GAG>AAG	p.E467K	UNC5D_uc003xjs.1_Missense_Mutation_p.E462K|UNC5D_uc003xju.1_Missense_Mutation_p.E43K|UNC5D_uc003xjt.1_Missense_Mutation_p.E225K	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	467	Cytoplasmic (Potential).				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TCTGGACAAGGAGCTCATGAC	0.532000													35	36					0	0	0.00283554	0	0
BAG4	9530	broad.mit.edu	37	8	38065273	38065273	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:38065273C>T	uc003xky.1	+	3	904	c.622C>T	c.(622-624)CCG>TCG	p.P208S	BAG4_uc003xkz.1_Missense_Mutation_p.P172S	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	208					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				TCCAGGATATCCGCCTTCACA	0.478000													43	26					0	0	0.00222228	0	0
ADAM2	2515	broad.mit.edu	37	8	39679138	39679138	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:39679138G>A	uc003xnj.2	-	5	386	c.311C>T	c.(310-312)TCT>TTT	p.S104F	ADAM2_uc003xnk.2_Missense_Mutation_p.S104F|ADAM2_uc011lck.1_Missense_Mutation_p.S104F|ADAM2_uc003xnl.2_Missense_Mutation_p.S104F	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	104					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CATCACCACAGATTTTGGATA	0.269000													32	43					0	0	0.00128727	0	0
MCM4	4173	broad.mit.edu	37	8	48883220	48883220	+	Silent	SNP	C	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:48883220C>A	uc003xqk.1	+	12	1679	c.1584C>A	c.(1582-1584)CCC>CCA	p.P528P	MCM4_uc003xql.1_Silent_p.P528P|MCM4_uc011ldi.1_Silent_p.P515P	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	528	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				ACCTCGTCCCCAGGGGCCAGT	0.582000													22	30					5.45024e-15	1.80235e-14	0.00332997	1	0
OPRK1	4986	broad.mit.edu	37	8	54141918	54141918	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:54141918C>T	uc003xrh.1	-	3	1457	c.1082G>A	c.(1081-1083)CGA>CAA	p.R361Q	OPRK1_uc003xri.1_Missense_Mutation_p.R361Q|OPRK1_uc010lyc.1_Missense_Mutation_p.R272Q	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	361	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AACTGTATTTCGGACTCTGCT	0.478000													57	63					0	0	0.00361006	0	0
RP1	6101	broad.mit.edu	37	8	55540055	55540055	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:55540055C>T	uc003xsd.1	+	4	3761	c.3613C>T	c.(3613-3615)CCA>TCA	p.P1205S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1205					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGACATGGTTCCAATAGATCT	0.423000													71	82					0	0	0.00361006	0	0
RP1	6101	broad.mit.edu	37	8	55540307	55540307	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:55540307G>A	uc003xsd.1	+	4	4013	c.3865G>A	c.(3865-3867)GAT>AAT	p.D1289N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1289					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTATGGTGTGGATCAGACTTC	0.408000													77	121					0	0	0.00361006	0	0
RP1	6101	broad.mit.edu	37	8	55540643	55540643	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:55540643C>T	uc003xsd.1	+	4	4349	c.4201C>T	c.(4201-4203)CTT>TTT	p.L1401F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1401					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTCCTGTGGCCTTTGCCTAAG	0.318000													29	92					0	0	0.00209593	0	0
RP1	6101	broad.mit.edu	37	8	55542301	55542301	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:55542301G>A	uc003xsd.1	+	4	6007	c.5859G>A	c.(5857-5859)ATG>ATA	p.M1953I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1953					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATTTATGGATGAAAATACACC	0.333000													30	48					0	0	0.00283554	0	0
ARFGEF1	10565	broad.mit.edu	37	8	68140256	68140256	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:68140256C>T	uc003xxo.1	-	25	3923	c.3533G>A	c.(3532-3534)GGA>GAA	p.G1178E	ARFGEF1_uc003xxl.1_Missense_Mutation_p.G632E|ARFGEF1_uc003xxn.1_Missense_Mutation_p.G161E	NM_006421	NP_006412	Q9Y6D6	BIG1_HUMAN	brefeldin A-inhibited guanine	1178					exocytosis|regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity|myosin binding			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|kidney(1)	8	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.0043)|OV - Ovarian serous cystadenocarcinoma(28;0.00578)|all cancers(69;0.0173)|BRCA - Breast invasive adenocarcinoma(89;0.206)			TCTTATTCTTCCCATGTTGTA	0.328000													9	78					0	0	0.000442599	0	0
PREX2	80243	broad.mit.edu	37	8	68981287	68981287	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:68981287C>T	uc003xxv.1	+	12	1386	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F	PREX2_uc003xxu.1_Silent_p.F453F|PREX2_uc011lez.1_Silent_p.F388F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	453	DEP 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AACATCAATTCAAACCAGAAC	0.313000													19	39					0	0	0.000958276	0	0
IMPA1	3612	broad.mit.edu	37	8	82571616	82571617	+	Missense_Mutation	DNP	AA	CC	CC			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:82571616_82571617AA>CC	uc003ych.2	-	9	930_931	c.803_804TT>GG	c.(802-804)GTT>GGG	p.V268G	IMPA1_uc011lfq.1_Missense_Mutation_p.V327G|IMPA1_uc011lfr.1_3'UTR	NM_005536	NP_005527	P29218	IMPA1_HUMAN	inositol(myo)-1(or 4)-monophosphatase 1 isoform	268					inositol phosphate dephosphorylation|phosphatidylinositol biosynthetic process|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(1)	1					Lithium(DB01356)	GCAAAGGTATAACCTGAATTTC	0.376000													38	63					0	0	6.4e-05	0	0
CDH17	1015	broad.mit.edu	37	8	95186112	95186112	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:95186112G>A	uc003ygh.2	-	7	821	c.696C>T	c.(694-696)ATC>ATT	p.I232I	CDH17_uc011lgo.1_Intron|CDH17_uc011lgp.1_Silent_p.I232I	NM_004063	NP_004054	Q12864	CAD17_HUMAN	cadherin 17 precursor	232	Extracellular (Potential).|Cadherin 2.					integral to membrane	calcium ion binding			ovary(5)|skin(1)	6	Breast(36;4.65e-06)		BRCA - Breast invasive adenocarcinoma(8;0.00691)			CTGTCACTATGATATCCACAG	0.443000													64	78					0	0	0.00361006	0	0
KCNS2	3788	broad.mit.edu	37	8	99441224	99441224	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:99441224G>A	uc003yin.2	+	2	1367	c.1017G>A	c.(1015-1017)GGG>GGA	p.G339G		NM_020697	NP_065748	Q9ULS6	KCNS2_HUMAN	potassium voltage-gated channel,	339	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1	Breast(36;2.4e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.0448)			TCTCCGTGGGGATTTCCATCT	0.577000													25	39					0	0	0.000720815	0	0
RGS22	26166	broad.mit.edu	37	8	100999713	100999713	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:100999713G>A	uc003yjb.1	-	21	3348	c.3153C>T	c.(3151-3153)CTC>CTT	p.L1051L	RGS22_uc003yja.1_Silent_p.L870L|RGS22_uc003yjc.1_Silent_p.L1039L	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1051	RGS 2.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CTTGCCAAAAGAGTAAACCAT	0.323000													22	77					0	0	0.00188189	0	0
ABRA	137735	broad.mit.edu	37	8	107782392	107782392	+	Silent	SNP	C	T	T	rs138488793		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:107782392C>T	uc003ymm.3	-	1	81	c.27G>A	c.(25-27)GGG>GGA	p.G9G		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	9					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			CTGGGCCCTCCCCGCTTTCCT	0.607000													13	87					0	0	0.00400662	0	0
CSMD3	114788	broad.mit.edu	37	8	113308134	113308134	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:113308134G>A	uc003ynu.2	-	54	8701	c.8542C>T	c.(8542-8544)CGA>TGA	p.R2848*	CSMD3_uc003yns.2_Nonsense_Mutation_p.R2050*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.R2808*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.R2679*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2848	Extracellular (Potential).|Sushi 18.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CCAATCAATCGAAAACCAGGA	0.403000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	37					0	0	0.000720815	0	0
COL14A1	7373	broad.mit.edu	37	8	121211734	121211734	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:121211734G>A	uc003yox.2	+	8	1071	c.806G>A	c.(805-807)GGA>GAA	p.G269E	COL14A1_uc003yoy.2_5'UTR|COL14A1_uc010mde.1_Intron	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	269	VWFA 1.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATCACAGATGGAAAATCCCAA	0.383000													45	53					0	0	0.00195071	0	0
ZHX2	22882	broad.mit.edu	37	8	123964338	123964338	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:123964338C>T	uc003ypk.1	+	3	1155	c.588C>T	c.(586-588)GCC>GCT	p.A196A		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	196	Required for homodimerization.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			AAGCGGATGCCAAGAAGGTGC	0.577000													25	143					0	0	0.000720815	0	0
C8orf76	84933	broad.mit.edu	37	8	124232387	124232387	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:124232387G>A	uc003yqc.1	-	6	1130	c.1099C>T	c.(1099-1101)CCA>TCA	p.P367S		NM_032847	NP_116236	Q96K31	CH076_HUMAN	hypothetical protein LOC84933	367							binding			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TTTTCAAATGGACAGAAATGG	0.383000													33	62					0	0	0.000953801	0	0
ADCY8	114	broad.mit.edu	37	8	131848660	131848660	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:131848660G>A	uc003ytd.3	-	12	2794	c.2538C>T	c.(2536-2538)ACC>ACT	p.T846T	ADCY8_uc010mds.2_Silent_p.T715T	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	846	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AAACTGCACAGGTCACCATGG	0.557000										HNSCC(32;0.087)			24	44					0	0	0.00278032	0	0
ADCY8	114	broad.mit.edu	37	8	131880102	131880102	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:131880102G>A	uc003ytd.3	-	9	2456	c.2200C>T	c.(2200-2202)CCT>TCT	p.P734S	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	734	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			CTTGAAGAAGGAAGCAAACTT	0.353000										HNSCC(32;0.087)			22	69					0	0	0.00229938	0	0
FAM135B	51059	broad.mit.edu	37	8	139149490	139149490	+	Missense_Mutation	SNP	A	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:139149490A>T	uc003yuy.2	-	19	4086	c.3915T>A	c.(3913-3915)TTT>TTA	p.F1305L	FAM135B_uc003yux.2_Missense_Mutation_p.F1206L|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1305										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CGACGTTTTTAAAATACTGCA	0.428000										HNSCC(54;0.14)			23	236					0	0	0.00332997	0	0
COL22A1	169044	broad.mit.edu	37	8	139668175	139668175	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:139668175G>C	uc003yvd.2	-	45	3745	c.3298C>G	c.(3298-3300)CTA>GTA	p.L1100V	COL22A1_uc011ljo.1_Missense_Mutation_p.L380V	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1100	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGAGACAGTAGTGAAGAGAGG	0.383000										HNSCC(7;0.00092)			43	395					0	0	0.0025221	0	0
ARC	23237	broad.mit.edu	37	8	143694666	143694666	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:143694666G>A	uc003ywn.1	-	1	1168	c.967C>T	c.(967-969)CAG>TAG	p.Q323*		NM_015193	NP_056008	Q7LC44	ARC_HUMAN	activity-regulated cytoskeleton-associated	323					endocytosis	acrosomal vesicle|cell junction|dendritic spine|endosome|postsynaptic density|postsynaptic membrane				breast(1)	1	all_cancers(97;3.55e-12)|all_epithelial(106;1.03e-08)|Lung NSC(106;0.000353)|all_lung(105;0.00092)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.0279)				ACCACGTACTGGATGATCTCC	0.657000													78	43					0	0	0.00361006	0	0
ZC3H3	23144	broad.mit.edu	37	8	144522285	144522285	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:144522285G>C	uc003yyd.2	-	11	2770	c.2741C>G	c.(2740-2742)TCC>TGC	p.S914C		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	914					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			GGACTGCAGGGAGATGAAGGA	0.652000													7	70					0	0	0.000274275	0	0
LRRC24	441381	broad.mit.edu	37	8	145748575	145748576	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr8:145748575_145748576CC>TT	uc003zdm.2	-	5	957_958	c.825_826GG>AA	c.(823-828)GAGGAC>GAAAAC	p.D276N	LRRC24_uc003zdn.2_Missense_Mutation_p.D273N|LRRC14_uc003zdk.1_3'UTR|LRRC14_uc003zdl.1_3'UTR|LRRC14_uc003zdo.2_RNA	NM_001024678	NP_001019849	Q50LG9	LRC24_HUMAN	leucine rich repeat containing 24 precursor	276	Ig-like C2-type.					integral to membrane					0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			ACCCGCAGGTCCTCACCCAGGT	0.678000													6	30					0	0	6.4e-05	0	0
PTPRD	5789	broad.mit.edu	37	9	8486256	8486256	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:8486256T>C	uc003zkk.2	-	27	3272	c.2561A>G	c.(2560-2562)CAG>CGG	p.Q854R	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.Q845R|PTPRD_uc003zkm.2_Missense_Mutation_p.Q841R|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	854	Fibronectin type-III 6.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ACGGTAGCCCTGAAGAGGTCC	0.473000										TSP Lung(15;0.13)			3	50					0	0	6.4e-05	0	0
CER1	9350	broad.mit.edu	37	9	14720328	14720328	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:14720328C>T	uc003zlj.2	-	2	609	c.564G>A	c.(562-564)GGG>GGA	p.G188G		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	188	CTCK.				BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		ACCCGCATTTCCCAAAGCAAA	0.448000													24	9					0	0	0.00332997	0	0
KIAA1797	54914	broad.mit.edu	37	9	20988359	20988359	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:20988359G>A	uc003zog.1	+	43	5298	c.4935G>A	c.(4933-4935)TTG>TTA	p.L1645L	KIAA1797_uc003zoh.1_Silent_p.L1081L	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1645						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		AGTGGCTCTTGGAACTGATGG	0.378000													21	30					0	0	0.00332997	0	0
ANXA1	301	broad.mit.edu	37	9	75781074	75781074	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:75781074G>A	uc004ajf.1	+	10	842	c.768G>A	c.(766-768)TTG>TTA	p.L256L	ANXA1_uc004aje.1_Silent_p.L256L|ANXA1_uc004ajg.1_Silent_p.L256L	NM_000700	NP_000691	P04083	ANXA1_HUMAN	annexin I	256	Annexin 3.				alpha-beta T cell differentiation|anti-apoptosis|cell surface receptor linked signaling pathway|cellular component movement|inflammatory response|keratinocyte differentiation|lipid metabolic process|peptide cross-linking|positive regulation of vesicle fusion	basolateral plasma membrane|cilium|cornified envelope|cytoplasm|extracellular region|nucleus	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity|protein binding, bridging|receptor binding|structural molecule activity			breast(1)|central_nervous_system(1)	2		all_epithelial(88;2.54e-11)		OV - Ovarian serous cystadenocarcinoma(323;2.82e-06)|GBM - Glioblastoma multiforme(74;0.0325)	Alclometasone(DB00240)|Amcinonide(DB00288)|Beclomethasone(DB00394)|Betamethasone(DB00443)|Clobetasol(DB01013)|Clocortolone(DB00838)|Desonide(DB01260)|Desoximetasone(DB00547)|Dexamethasone(DB01234)|Diflorasone(DB00223)|Flumethasone Pivalate(DB00663)|Halobetasol Propionate(DB00596)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mometasone(DB00764)|Prednicarbate(DB01130)|Prednisone(DB00635)|Rimexolone(DB00896)|Triamcinolone(DB00620)	ACCTGGAGTTGAAAGGTGACA	0.353000													21	40					0	0	0.000720815	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607212	84607212	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:84607212C>T	uc004amn.2	+	4	1874	c.1827C>T	c.(1825-1827)CCC>CCT	p.P609P		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	609						integral to membrane					0						TTCATAGACCCCAGAACGAGG	0.498000													50	43					0	0	0.00361006	0	0
GADD45G	10912	broad.mit.edu	37	9	92220903	92220903	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:92220903G>C	uc004aqq.2	+	4	499	c.389G>C	c.(388-390)TGG>TCG	p.W130S	GADD45G_uc004aqr.2_Missense_Mutation_p.W112S	NM_006705	NP_006696	O95257	GA45G_HUMAN	growth arrest and DNA-damage-inducible, gamma	130					activation of MAPKKK activity|apoptosis|cell differentiation|DNA repair|multicellular organismal development		protein binding				0						GAGGACGCCTGGAAGGATCCC	0.682000													4	21					0	0	0.000602214	0	0
FAM120A	23196	broad.mit.edu	37	9	96323390	96323390	+	Splice_Site	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:96323390G>A	uc004atw.2	+	16	2832	c.2807_splice	c.e16-1	p.G936_splice	FAM120A_uc004aty.2_Splice_Site_p.G717_splice|FAM120A_uc004atz.2_Splice_Site_p.G584_splice|FAM120A_uc010mrg.2_Splice_Site_p.G203_splice|FAM120A_uc004aua.1_5'Flank	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator							cytoplasm|plasma membrane	RNA binding				0						TTTTTATGCAGGAGTCCAACC	0.443000													17	51					0	0	0.000958276	0	0
HIATL1	84641	broad.mit.edu	37	9	97177485	97177485	+	Missense_Mutation	SNP	A	G	G			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:97177485A>G	uc004aur.2	+	2	423	c.154A>G	c.(154-156)ATC>GTC	p.I52V	HIATL1_uc011luh.1_5'UTR	NM_032558	NP_115947	Q5SR56	HIAL1_HUMAN	hippocampus abundant transcript-like 1	52	Helical; (Potential).				transmembrane transport	integral to membrane|plasma membrane	protein binding|transporter activity			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				TGCTATTGTCATCTTCCTTGA	0.363000													51	235					0	0	0.00361006	0	0
CTSL2	1515	broad.mit.edu	37	9	99798970	99798970	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:99798970G>A	uc004awt.2	-	5	653	c.456C>T	c.(454-456)TTC>TTT	p.F152F	CTSL2_uc010msi.2_Silent_p.F152F|CTSL2_uc004awu.2_Silent_p.F97F|CTSL2_uc010msj.1_Silent_p.F97F|CTSL2_uc010msk.2_Silent_p.F97F	NM_001333	NP_001324	O60911	CATL2_HUMAN	cathepsin L2 preproprotein	152						lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(62;0.0559)				CAGTTTTCCGGAACATCTGTC	0.473000													98	76					0	0	0.00361006	0	0
GALNT12	79695	broad.mit.edu	37	9	101585614	101585614	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:101585614T>C	uc004ayz.2	+	2	448	c.448T>C	c.(448-450)TCA>CCA	p.S150P		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	150	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				TGAAGCCTGGTCAACTCTCCT	0.423000													65	30					0	0	0.00361006	0	0
COL15A1	1306	broad.mit.edu	37	9	101777809	101777809	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:101777809C>T	uc004azb.1	+	10	1670	c.1464C>T	c.(1462-1464)CCC>CCT	p.P488P		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	488	3.|Nonhelical region 1 (NC1).|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GCCTGGCTCCCCTCACAGCCA	0.567000													21	21					0	0	0.00278032	0	0
COL15A1	1306	broad.mit.edu	37	9	101778395	101778395	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:101778395C>T	uc004azb.1	+	11	1847	c.1641C>T	c.(1639-1641)ATC>ATT	p.I547I		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	547	Nonhelical region 1 (NC1).|4.|4 X tandem repeats.				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				AAAGATGGATCACTCCAGTAA	0.592000													35	21					0	0	0.00111076	0	0
OR13F1	138805	broad.mit.edu	37	9	107267446	107267446	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:107267446G>A	uc011lvm.1	+	1	903	c.903G>A	c.(901-903)TTG>TTA	p.L301L		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AAGTGGCCTTGAAAAAATTGC	0.363000													55	39					0	0	0.00361006	0	0
NIPSNAP3A	25934	broad.mit.edu	37	9	107515294	107515294	+	Missense_Mutation	SNP	G	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:107515294G>C	uc004bch.1	+	3	484	c.379G>C	c.(379-381)GAG>CAG	p.E127Q	NIPSNAP3A_uc011lvt.1_Missense_Mutation_p.E127Q|NIPSNAP3A_uc011lvu.1_Missense_Mutation_p.E127Q	NM_015469	NP_056284	Q9UFN0	NPS3A_HUMAN	nipsnap homolog 3A	127						cytosol					0						ACAAGAGAGTGAGATTACTTA	0.373000													80	64					0	0	0.00361006	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112694228	112694228	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:112694228C>T	uc004bei.2	+	6	608	c.416C>T	c.(415-417)TCC>TTC	p.S139F	PALM2_uc004bef.2_Missense_Mutation_p.S141F|PALM2_uc004beg.2_Intron|PALM2_uc004beh.3_Missense_Mutation_p.S139F|PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.S139F|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.S139F|PALM2-AKAP2_uc004bel.1_Intron	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	Error:Variant_position_missing_in_Q9Y2D5_after_alignment							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						TACATTTCCTCCCAGCTTCCC	0.542000													74	193					0	0	0.00361006	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900676	112900676	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:112900676C>T	uc004bei.2	+	9	3740	c.3548C>T	c.(3547-3549)TCC>TTC	p.S1183F	PALM2-AKAP2_uc004bek.3_Missense_Mutation_p.S951F|PALM2-AKAP2_uc004bej.3_Missense_Mutation_p.S951F|PALM2-AKAP2_uc004bel.1_Missense_Mutation_p.S761F|AKAP2_uc011lwi.1_Missense_Mutation_p.S809F|AKAP2_uc004bem.2_Missense_Mutation_p.S809F|PALM2-AKAP2_uc010mtw.1_Missense_Mutation_p.S769F|AKAP2_uc011lwj.1_Missense_Mutation_p.S720F|PALM2-AKAP2_uc004ben.2_Missense_Mutation_p.S720F	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	720	Potential.						enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						CGGACTTTGTCCATGATTGAG	0.542000													27	69					0	0	0.000720815	0	0
MUSK	4593	broad.mit.edu	37	9	113449505	113449505	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:113449505G>A	uc004bey.2	+	3	413	c.315G>A	c.(313-315)GTG>GTA	p.V105V	MUSK_uc004bex.2_Silent_p.V105V	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	105	Ig-like 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ACAATGGTGTGGGAGGAGCTG	0.502000													96	113					0	0	0.00361006	0	0
SUSD1	64420	broad.mit.edu	37	9	114905867	114905867	+	Missense_Mutation	SNP	T	C	C			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:114905867T>C	uc004bfu.2	-	4	451	c.410A>G	c.(409-411)CAT>CGT	p.H137R	SUSD1_uc010mui.2_Missense_Mutation_p.H137R|SUSD1_uc010muj.2_Missense_Mutation_p.H137R	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	137	EGF-like 3; calcium-binding (Potential).|Extracellular (Potential).					integral to membrane	calcium ion binding				0						TCGCCCTCCATGCCTGCACAG	0.413000													24	187					0	0	0.000878237	0	0
DENND1A	57706	broad.mit.edu	37	9	126214555	126214555	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:126214555G>A	uc004bnz.1	-	17	1532	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	DENND1A_uc011lzl.1_Silent_p.F208F|DENND1A_uc004bny.1_Silent_p.F172F|DENND1A_uc011lzm.1_Silent_p.F401F|DENND1A_uc004boa.1_Silent_p.F433F|DENND1A_uc004bob.1_Silent_p.F403F|DENND1A_uc004boc.2_Silent_p.F401F	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	433						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						CAGTACTTACGAACTTGTAGA	0.323000													30	78					0	0	0.00375469	0	0
RALGPS1	9649	broad.mit.edu	37	9	129958901	129958901	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:129958901C>T	uc004bqo.1	+	13	1453	c.1186C>T	c.(1186-1188)CTC>TTC	p.L396F	RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	396					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						CACCAATGGACTCTCCCTAGG	0.612000													62	65					0	0	0.00361006	0	0
PTGES2	80142	broad.mit.edu	37	9	130885305	130885305	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:130885305G>A	uc004bti.2	-	5	1273	c.795C>T	c.(793-795)GTC>GTT	p.V265V	PTGES2_uc004btj.2_RNA|PTGES2_uc004btk.2_Silent_p.V74V|PTGES2_uc004btl.2_Silent_p.V74V|PTGES2_uc004btm.2_RNA	NM_025072	NP_079348	Q9H7Z7	PGES2_HUMAN	prostaglandin E synthase 2	265	GST C-terminal.|Cytoplasmic (Potential).				cell redox homeostasis|prostaglandin biosynthetic process	Golgi membrane|integral to membrane|mitochondrion|perinuclear region of cytoplasm	electron carrier activity|prostaglandin-E synthase activity|protein binding|protein disulfide oxidoreductase activity				0						TGCCCTCGCGGACAATGTAGT	0.622000													36	69					0	0	0.00428921	0	0
LRRC8A	56262	broad.mit.edu	37	9	131669831	131669831	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:131669831C>T	uc004bwl.3	+	3	642	c.388C>T	c.(388-390)CTT>TTT	p.L130F	LRRC8A_uc010myp.2_Missense_Mutation_p.L130F|LRRC8A_uc010myq.2_Missense_Mutation_p.L130F	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	130	Helical; (Potential).				pre-B cell differentiation	integral to membrane					0						CTACCTGGTGCTTCTGCACAC	0.542000													16	43					0	0	0.000566183	0	0
DBH	1621	broad.mit.edu	37	9	136523475	136523475	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:136523475C>T	uc004cel.2	+	12	1769	c.1760C>T	c.(1759-1761)TCC>TTC	p.S587F	uc010nao.1_5'Flank	NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	587	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	AAGGTCATCTCCACACTGGAA	0.647000													15	54					0	0	0.00400662	0	0
COL5A1	1289	broad.mit.edu	37	9	137707809	137707809	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:137707809G>A	uc004cfe.2	+	52	4479	c.4097G>A	c.(4096-4098)GGA>GAA	p.G1366E		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1366	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GGTGACAAAGGAGATGATGGT	0.567000													19	22					0	0	0.00152264	0	0
KIAA0649	9858	broad.mit.edu	37	9	138377022	138377022	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:138377022C>T	uc004cfr.1	+	4	1215	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	222						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		ATGACTCCTTCGAGCAGAGCA	0.552000													31	81					0	0	0.00375469	0	0
GLT6D1	360203	broad.mit.edu	37	9	138516118	138516118	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:138516118G>A	uc010nbd.1	-	5	910	c.656C>T	c.(655-657)CCG>CTG	p.P219L		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	219	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		CTGTCCAAACGGGATGCAAGC	0.488000													21	60					0	0	0.00395357	0	0
SNAPC4	6621	broad.mit.edu	37	9	139272216	139272216	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:139272216G>A	uc004chh.2	-	21	4072	c.4063C>T	c.(4063-4065)CTC>TTC	p.L1355F		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	1355	SNAPC2-binding.			L->A: Abolishes SNAPC2-binding.	snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		TTGTCCTGGAGCTGCCCCCGC	0.731000													13	9					0	0	0.00136819	0	0
C9orf139	401563	broad.mit.edu	37	9	139929162	139929162	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr9:139929162C>T	uc004ckp.1	+	3	1743	c.229C>T	c.(229-231)CCT>TCT	p.P77S	FUT7_uc004ckq.2_5'Flank	NM_207511	NP_997394	Q6ZV77	CI139_HUMAN	hypothetical protein LOC401563	77											0	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.99e-05)|Epithelial(140;0.000493)		GGTGACCCGGCCTCTGGTGCC	0.657000													12	49					0	0	0.000978159	0	0
ARSF	416	broad.mit.edu	37	X	3030306	3030306	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:3030306C>T	uc004cre.1	+	11	1703	c.1482C>T	c.(1480-1482)TTC>TTT	p.F494F	ARSF_uc004crf.1_Silent_p.F494F	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	494						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCAGATGTTTCGGAGAACAGG	0.547000													55	12					0	0	0.00361006	0	0
MXRA5	25878	broad.mit.edu	37	X	3243014	3243014	+	Missense_Mutation	SNP	T	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:3243014T>A	uc004crg.3	-	5	869	c.712A>T	c.(712-714)ATT>TTT	p.I238F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	238	LRRCT.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CACTTCAGAATTCCTAAAACA	0.398000													13	1					0	0	0.00244969	0	0
ATXN3L	92552	broad.mit.edu	37	X	13337364	13337364	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:13337364C>T	uc010ned.2	-	1	1155	c.690G>A	c.(688-690)CAG>CAA	p.Q230Q		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	230	UIM 1.				protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						CAAGGGCCCTCTGAAAATCCT	0.413000													222	40					0	0	0.00361006	0	0
FAM47A	158724	broad.mit.edu	37	X	34149691	34149691	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:34149691G>A	uc004ddg.2	-	1	738	c.705C>T	c.(703-705)CTC>CTT	p.L235L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	235	Pro-rich.									ovary(4)|central_nervous_system(1)	5						GCTCCGGGCGGAGATGGGACA	0.632000													30	8					0	0	0.0024448	0	0
FAM47C	442444	broad.mit.edu	37	X	37027692	37027692	+	Silent	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:37027692C>T	uc004ddl.1	+	1	1223	c.1209C>T	c.(1207-1209)TTC>TTT	p.F403F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	403										ovary(3)	3						CTCCTCTCTTCCCGGAGCCTC	0.612000													26	6					0	0	0.0024448	0	0
ZNF157	7712	broad.mit.edu	37	X	47271947	47271947	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:47271947G>A	uc004dhr.1	+	4	544	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	159					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCCAGAGGAGATAAAAACTT	0.383000													28	3					0	0	0.00106085	0	0
IQSEC2	23096	broad.mit.edu	37	X	53277939	53277939	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:53277939C>T	uc004dsd.2	-	6	2624	c.2423G>A	c.(2422-2424)GGG>GAG	p.G808E	IQSEC2_uc004dsc.2_Missense_Mutation_p.G603E	NM_001111125	NP_001104595	Q5JU85	IQEC2_HUMAN	IQ motif and Sec7 domain 2 isoform1	798	SEC7.				regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3						CTGCCGGTTCCCTAGGAATTC	0.602000													25	3					0	0	0.00127121	0	0
FOXR2	139628	broad.mit.edu	37	X	55650362	55650362	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:55650362C>T	uc004duo.2	+	1	530	c.218C>T	c.(217-219)CCC>CTC	p.P73L		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	73					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						GATGGTCCTCCCTGTGAACCC	0.537000													20	5					0	0	0.00152264	0	0
MTMR8	55613	broad.mit.edu	37	X	63551549	63551549	+	Missense_Mutation	SNP	G	A	A	rs139002441	byFrequency	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:63551549G>A	uc004dvs.2	-	11	1308	c.1240C>T	c.(1240-1242)CCC>TCC	p.P414S	MTMR8_uc011mou.1_Intron|MTMR8_uc004dvt.1_Missense_Mutation_p.P414S	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	414	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						AAGGCACAGGGAAACTGTTCC	0.463000													23	7					0	0	0.00278032	0	0
HEPH	9843	broad.mit.edu	37	X	65476031	65476031	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:65476031C>T	uc011moz.1	+	17	2824	c.2764C>T	c.(2764-2766)CGG>TGG	p.R922W	HEPH_uc004dwn.2_Missense_Mutation_p.R922W|HEPH_uc004dwo.2_Missense_Mutation_p.R652W|HEPH_uc010nkr.2_Missense_Mutation_p.R730W|HEPH_uc011mpa.1_Missense_Mutation_p.R922W|HEPH_uc010nks.2_Missense_Mutation_p.R211W	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	919	Extracellular (Potential).|Plastocyanin-like 6.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TGACATGGATCGGGAATTTGC	0.493000													38	6					0	0	0.00148497	0	0
P2RY4	5030	broad.mit.edu	37	X	69479145	69479145	+	Silent	SNP	G	A	A	rs146718292	byFrequency	TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:69479145G>A	uc004dxz.1	-	1	510	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_002565	NP_002556	P51582	P2RY4_HUMAN	pyrimidinergic receptor P2Y4	110	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1						GAAAGCGGACGAACTTGCAGA	0.542000													18	5					0	0	0.000958276	0	0
SLC16A2	6567	broad.mit.edu	37	X	73751372	73751372	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:73751372C>T	uc004ebt.2	+	6	1992	c.1826C>T	c.(1825-1827)CCT>CTT	p.P609L	SLC16A2_uc010nlr.1_3'UTR	NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	535	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TCCCCCAACCCTGAGGAACCA	0.532000													14	12					0	0	0.00244969	0	0
LOC442459	442459	broad.mit.edu	37	X	98975170	98975170	+	RNA	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:98975170C>T	uc011mrd.1	-	8		c.1173G>A				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						TCTTCTGTTTCCTCTTTCTCC	0.453000													16	2					0	0	0.000566183	0	0
NXF5	55998	broad.mit.edu	37	X	101096040	101096040	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:101096040C>T	uc011mrk.1	-	8	788	c.428G>A	c.(427-429)CGA>CAA	p.R143Q	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_RNA|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	143					mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						GCAGTTTCTTCGATTCAGGAT	0.522000													63	85					0	0	0.00361006	0	0
WDR44	54521	broad.mit.edu	37	X	117526679	117526679	+	Missense_Mutation	SNP	G	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:117526679G>T	uc004eqn.2	+	4	696	c.271G>T	c.(271-273)GAT>TAT	p.D91Y	WDR44_uc004eqo.2_Missense_Mutation_p.D91Y|WDR44_uc011mtr.1_Missense_Mutation_p.D66Y|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	91	Binding activity.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						AGAACTCTCTGATCAAGCTAC	0.408000													69	9					1.05635e-38	3.51537e-38	0.00361006	1	0
THOC2	57187	broad.mit.edu	37	X	122767863	122767863	+	Missense_Mutation	SNP	C	T	T			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:122767863C>T	uc004etu.2	-	20	2109	c.2077G>A	c.(2077-2079)GAG>AAG	p.E693K	THOC2_uc011muh.1_Missense_Mutation_p.E618K	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	693					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						GTCATTTCCTCTGTAATTTCT	0.333000													58	12					0	0	0.00361006	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969345	140969345	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:140969345G>A	uc011mwp.1	+	4	672	c.672G>A	c.(670-672)ATG>ATA	p.M224I		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	224	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					ACTTTCCTATGATCTTCAGGA	0.433000													84	16					0	0	0.00361006	0	0
CD99L2	83692	broad.mit.edu	37	X	149963941	149963941	+	Missense_Mutation	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:149963941G>A	uc004fel.2	-	5	414	c.296C>T	c.(295-297)ACC>ATC	p.T99I	CD99L2_uc004fek.2_RNA|CD99L2_uc004fem.2_Missense_Mutation_p.T50I|CD99L2_uc004fen.2_Intron|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_Intron	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	99	Extracellular (Potential).|Poly-Thr.				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGTCGTGGTGGTTACATGGTT	0.512000													59	12					0	0	0.00361006	0	0
FAM58A	92002	broad.mit.edu	37	X	152860083	152860083	+	Silent	SNP	G	A	A			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chrX:152860083G>A	uc010nug.2	-	2	268	c.165C>T	c.(163-165)CTC>CTT	p.L55L				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;	117					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGCTGTCCCGGAGTTCCCAGA	0.567000													32	2					0	0	0.0024448	0	0
MEGF6	1953	broad.mit.edu	37	1	3425693	3425693	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:3425693delC	uc001akl.2	-	12	1701	c.1474delG	c.(1474-1476)GCCfs	p.A492fs	MEGF6_uc001akk.2_Frame_Shift_Del_p.A387fs	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	492						extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		TCCTCATCGGCCCCGACGTCG	0.687													2	4	---	---	---	---					
KCNA10	3744	broad.mit.edu	37	1	111061179	111061180	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr1:111061179_111061180delCT	uc001dzt.1	-	1	618_619	c.230_231delAG	c.(229-231)GAGfs	p.E77fs		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	77						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		GGACCACTGGCTCAGGCCCTGG	0.550													25	64	---	---	---	---					
MYBPC3	4607	broad.mit.edu	37	11	47357487	47357487	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr11:47357487delG	uc001nfa.3	-	25	2733	c.2678delC	c.(2677-2679)CCAfs	p.P893fs	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	892	Fibronectin type-III 2.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		CACGCGCTCTGGGGGCCGCCA	0.667													2	4	---	---	---	---					
CHD4	1108	broad.mit.edu	37	12	6711546	6711546	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:6711546delT	uc001qpo.2	-	3	382	c.218delA	c.(217-219)AAGfs	p.K73fs	CHD4_uc001qpn.2_Frame_Shift_Del_p.K73fs|CHD4_uc001qpp.2_Frame_Shift_Del_p.K70fs	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	73					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ACTCACCTCCTTTTTTTGGCG	0.468													9	334	---	---	---	---					
MLL2	8085	broad.mit.edu	37	12	49442494	49442494	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr12:49442494delA	uc001rta.3	-	13	4079	c.4079delT	c.(4078-4080)ATGfs	p.M1360fs		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	1360					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGTATTCTGCATGGTGTCATC	0.458			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			43	209	---	---	---	---					
KRTAP4-1	85285	broad.mit.edu	37	17	39340475	39340477	+	Splice_Site	DEL	TGC	-	-	rs145519739		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr17:39340475_39340477delTGC	uc002hwe.3	-	2	613	c.572_splice	c.e2+1			NM_033060	NP_149049	Q9BYQ7	KRA41_HUMAN	keratin associated protein 4-1							keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GAGGTCTGAATGCTGCTGGGAAG	0.379													5	1	---	---	---	---					
TGIF1	7050	broad.mit.edu	37	18	3452223	3452223	+	Frame_Shift_Del	DEL	T	-	-	rs11571510		TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr18:3452223delT	uc002klz.2	+	1	633	c.246delT	c.(244-246)CCTfs	p.P82fs	TGIF1_uc002klu.2_Intron|TGIF1_uc002klv.2_Intron|TGIF1_uc002klx.2_Intron|TGIF1_uc002klw.2_Intron|TGIF1_uc010dkm.1_Intron|TGIF1_uc002kly.2_Intron|TGIF1_uc002kma.2_Intron|TGIF1_uc002kmb.2_5'Flank	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	82					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				GCGCCCCCCCTCCTCCACCGG	0.766													9	4	---	---	---	---					
IRGQ	126298	broad.mit.edu	37	19	44096700	44096703	+	Frame_Shift_Del	DEL	GAGC	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr19:44096700_44096703delGAGC	uc002oww.2	-	2	1465_1468	c.1347_1350delGCTC	c.(1345-1350)GCGCTCfs	p.A449fs	IRGQ_uc010eiv.2_Frame_Shift_Del_p.A449fs	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	449_450	Ala-rich.						protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				GGGCTGGGGGGAGCGCTCGCCGCA	0.730													10	32	---	---	---	---					
MBD4	8930	broad.mit.edu	37	3	129155548	129155548	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr3:129155548delT	uc003emh.1	-	3	1115	c.939delA	c.(937-939)AAAfs	p.K313fs	MBD4_uc003emi.1_Frame_Shift_Del_p.K313fs|MBD4_uc003emj.1_Frame_Shift_Del_p.K313fs|MBD4_uc003emk.1_Intron|MBD4_uc011bkw.1_Frame_Shift_Del_p.K313fs	NM_003925	NP_003916	O95243	MBD4_HUMAN	methyl-CpG binding domain protein 4	313					depyrimidination	nucleoplasm	DNA N-glycosylase activity|endodeoxyribonuclease activity|protein binding|satellite DNA binding			ovary(1)|lung(1)	2						ATGATCTTTCTTTTTTTTTTA	0.373								BER_DNA_glycosylases					9	122	---	---	---	---					
HLA-J	3137	broad.mit.edu	37	6	29977389	29977393	+	Frame_Shift_Del	DEL	CTTCT	-	-			TCGA-EB-A24D-01A-11D-A197-08	TCGA-EB-A24D-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	6c884037-49f9-41c3-b0e5-9cbcd545aeb7	9147bffe-0ece-4015-be88-2d7d440060c0	g.chr6:29977389_29977393delCTTCT	uc003rtl.3	+	5	770_774	c.408_412delCTTCT	c.(406-414)GACTTCTCTfs	p.D136fs	HLA-G_uc011dmb.1_3'UTR|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						AGAACCCTGACTTCTCTTTCTGCAA	0.488													11	41	---	---	---	---					
