Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	980620	980620	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:980620C>T	uc001ack.1	+	13	2384	c.2334C>T	c.(2332-2334)ATC>ATT	p.I778I		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	778					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		AGGACAATATCACCGCAGCCC	0.706000													5	17					0	0	0.00116845	0	0
AGRN	375790	broad.mit.edu	37	1	982006	982006	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:982006C>T	uc001ack.1	+	18	3191	c.3141C>T	c.(3139-3141)TCC>TCT	p.S1047S		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1047	Ser/Thr-rich.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CGGCACCCTCCCCTGCACCCA	0.692000													5	14					0	0	0.00116845	0	0
TTLL10	254173	broad.mit.edu	37	1	1117765	1117765	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:1117765C>T	uc001acy.2	+	10	1006	c.855C>T	c.(853-855)TTC>TTT	p.F285F	uc001acx.1_5'Flank|TTLL10_uc010nyg.1_Silent_p.F285F|TTLL10_uc001acz.1_Silent_p.F212F	NM_001130045	NP_001123517	Q6ZVT0	TTL10_HUMAN	tubulin tyrosine ligase-like family, member 10	285	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			large_intestine(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;4.75e-36)|OV - Ovarian serous cystadenocarcinoma(86;5.82e-22)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		AAGAGTTTTTCCCAGAGACCT	0.562000													17	48					0	0	0.00074312	0	0
VWA1	64856	broad.mit.edu	37	1	1372309	1372309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:1372309C>T	uc001afs.2	+	2	296	c.76C>T	c.(76-78)CCA>TCA	p.P26S	VWA1_uc001afr.2_Intron	NM_022834	NP_073745	Q6PCB0	VWA1_HUMAN	von Willebrand factor A domain containing 1	26						basement membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCCCCCAGGTCCACCAGCATC	0.642000													15	56					0	0	0.000219431	0	0
MMEL1	79258	broad.mit.edu	37	1	2540832	2540832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:2540832C>T	uc001ajy.2	-	6	695	c.481G>A	c.(481-483)GAC>AAC	p.D161N	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	161	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		GCCGGCCGGTCCTTGGCAGTC	0.677000													7	11					0	0	0.000157383	0	0
DFFB	1677	broad.mit.edu	37	1	3800162	3800162	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:3800162C>T	uc001alc.2	+	7	1197	c.874C>T	c.(874-876)CTG>TTG	p.L292L	DFFB_uc001ale.2_RNA|DFFB_uc009vlp.2_RNA|DFFB_uc001alb.2_RNA|DFFB_uc010nzn.1_Silent_p.L316L|DFFB_uc009vlq.2_RNA|DFFB_uc009vlr.2_Silent_p.L243L|DFFB_uc001ald.2_Silent_p.L228L	NM_004402	NP_004393	O76075	DFFB_HUMAN	DNA fragmentation factor, 40 kD, beta	292					apoptotic chromosome condensation|DNA fragmentation involved in apoptotic nuclear change|intracellular signal transduction	cytosol|nucleoplasm	deoxyribonuclease activity|enzyme binding				0	all_cancers(77;0.0395)|Ovarian(185;0.0634)|all_lung(157;0.222)|Lung NSC(156;0.227)	all_cancers(23;2.05e-30)|all_epithelial(116;6.22e-21)|all_lung(118;2.65e-08)|Lung NSC(185;6.25e-06)|Breast(487;0.000659)|Renal(390;0.00121)|all_neural(13;0.0019)|Hepatocellular(190;0.00705)|Colorectal(325;0.0113)|all_hematologic(16;0.0194)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0548)|Medulloblastoma(700;0.211)		Epithelial(90;1.18e-39)|OV - Ovarian serous cystadenocarcinoma(86;7.28e-23)|GBM - Glioblastoma multiforme(42;2.95e-17)|Colorectal(212;1.23e-05)|COAD - Colon adenocarcinoma(227;5.94e-05)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00038)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.124)		TTTTTATGGCCTGCTTTTTAC	0.428000													24	76					0	0	0.000878237	0	0
SLC2A7	155184	broad.mit.edu	37	1	9079267	9079267	+	Splice_Site	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:9079267C>T	uc009vmo.1	-	4	436	c.436_splice	c.e4+1	p.G146_splice		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7							integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GCCCCAGGTACCTGCACAGAC	0.592000													4	19					0	0	8.12818e-05	0	0
Unknown	0	broad.mit.edu	37	1	9211863	9211863	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:9211863G>A	uc009vmq.2	-	2	418	c.312C>T	c.(310-312)CCC>CCT	p.P104P	MIR34A_hsa-mir-34a|MI0000268_5'Flank					EF609116																		AGGGGACTCGGGGGACAGGCC	0.473000													8	39					0	0	0.000157383	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856096	12856096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:12856096C>T	uc001auj.1	+	4	1479	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	459											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCCTGCCCTTCCTGTGGCTCA	0.562000													7	68					0	0	0.000308642	0	0
Unknown	0	broad.mit.edu	37	1	13634730	13634730	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:13634730G>A	uc001auz.3	+	4		c.943G>A								Homo sapiens PRAME family member 10, mRNA (cDNA clone MGC:138413 IMAGE:8327676), complete cds.																		GGTACCTCAAGAACCCCTTGG	0.502000													6	50					0	0	0.000442599	0	0
KAZ	23254	broad.mit.edu	37	1	15382772	15382772	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:15382772G>A	uc001avm.3	+	5	1193	c.912G>A	c.(910-912)CGG>CGA	p.R304R	KAZ_uc009vog.1_Silent_p.R304R|KAZ_uc010obj.1_Silent_p.R304R|KAZ_uc001avo.2_Silent_p.R298R|KAZ_uc001avp.2_Silent_p.R210R|KAZ_uc001avq.2_Silent_p.R210R|KAZ_uc001avr.2_Silent_p.R207R	NM_201628	NP_963922	Q674X7	KAZRN_HUMAN	kazrin isoform E	304	Interaction with PPL.				keratinization	cornified envelope|cytoplasm|desmosome|nucleus					0						CTGCGGACCGGCAAGGTGAGT	0.647000													4	11					0	0	0.00024832	0	0
TMEM82	388595	broad.mit.edu	37	1	16073508	16073508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:16073508C>T	uc001axc.2	+	5	1042	c.904C>T	c.(904-906)CTC>TTC	p.L302F		NM_001013641	NP_001013663	A0PJX8	TMM82_HUMAN	transmembrane protein 82	302	Helical; (Potential).|Leu-rich.					integral to membrane				breast(1)|central_nervous_system(1)	2		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCTCTGGTGTCTCGTGGGCGT	0.642000													12	39					0	0	0.00136819	0	0
SPEN	23013	broad.mit.edu	37	1	16258959	16258959	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:16258959C>A	uc001axk.1	+	11	6428	c.6224C>A	c.(6223-6225)TCA>TAA	p.S2075*	SPEN_uc010obp.1_Nonsense_Mutation_p.S2034*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2075					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AACTCCAAATCAAAGAGAGGA	0.488000													16	97					1.15088e-07	6.81163e-07	0.000422831	1	0
KIF17	57576	broad.mit.edu	37	1	20998650	20998650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:20998650C>T	uc001bdr.3	-	12	2621	c.2503G>A	c.(2503-2505)GAG>AAG	p.E835K	KIF17_uc001bdp.3_Missense_Mutation_p.E113K|KIF17_uc001bdq.3_Missense_Mutation_p.E113K|KIF17_uc009vpx.2_Missense_Mutation_p.E205K|KIF17_uc001bds.3_Missense_Mutation_p.E835K	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	835	Potential.				microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		AGCTGAAACTCGGACTGCAGA	0.557000													15	16					0	0	0.000566183	0	0
C1QC	714	broad.mit.edu	37	1	22973765	22973765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:22973765G>A	uc001bgc.3	+	3	330	c.227G>A	c.(226-228)GGA>GAA	p.G76E	C1QC_uc001bga.3_Missense_Mutation_p.G76E|C1QC_uc001bgb.2_Missense_Mutation_p.G76E	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	76	Collagen-like.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGGCAGAAGGGAGAACCCGGC	0.488000													7	16					0	0	0.000442599	0	0
C1orf172	126695	broad.mit.edu	37	1	27278454	27278454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:27278454G>A	uc001bni.1	-	2	507	c.418C>T	c.(418-420)CGT>TGT	p.R140C		NM_152365	NP_689578	Q8NAX2	CA172_HUMAN	hypothetical protein LOC126695	140										large_intestine(1)|ovary(1)	2		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.37e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.22e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)		GGGGGTGCACGATCAGGGCTG	0.632000													5	28					0	0	0.00116845	0	0
WDTC1	23038	broad.mit.edu	37	1	27630175	27630175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:27630175C>T	uc009vst.2	+	14	2067	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	WDTC1_uc001bno.2_Missense_Mutation_p.S510F|WDTC1_uc001bnp.1_RNA|WDTC1_uc001bnq.2_Missense_Mutation_p.S189F	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	511							protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		CGCAAGGACTCCATCTCAGAG	0.592000													11	56					0	0	0.000673444	0	0
PUM1	9698	broad.mit.edu	37	1	31479851	31479852	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:31479851_31479852CC>AA	uc001bsi.1	-	4	643_644	c.530_531GG>TT	c.(529-531)TGG>TTT	p.W177F	PUM1_uc001bsg.1_5'Flank|PUM1_uc001bsh.1_Missense_Mutation_p.W177F|PUM1_uc001bsj.1_Missense_Mutation_p.W177F|PUM1_uc010oga.1_Intron|PUM1_uc001bsk.1_Missense_Mutation_p.W213F|PUM1_uc010ogb.1_Intron	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	177					cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CTGATGTTCCCCAGGCACTGTC	0.436000													11	239					0	0	6.4e-05	0	0
KPNA6	23633	broad.mit.edu	37	1	32623923	32623923	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:32623923C>T	uc001bug.2	+	5	475	c.387C>T	c.(385-387)TTC>TTT	p.F129F	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Silent_p.F126F|KPNA6_uc010ogy.1_Silent_p.F134F|KPNA6_uc009vtz.2_Silent_p.F68F	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	129	ARM 2.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				TGGATCGGTTCGTGGAGTTTC	0.378000													45	126					0	0	0.000781405	0	0
HDAC1	3065	broad.mit.edu	37	1	32797291	32797291	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:32797291A>G	uc001bvb.1	+	11	1166	c.1103A>G	c.(1102-1104)GAG>GGG	p.E368G	HDAC1_uc010ohf.1_Missense_Mutation_p.E339G|HDAC1_uc001bvc.1_Missense_Mutation_p.E124G	NM_004964	NP_004955	Q13547	HDAC1_HUMAN	histone deacetylase 1	368					anti-apoptosis|blood coagulation|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|histone H3 deacetylation|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of androgen receptor signaling pathway|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytosol|NuRD complex|Sin3 complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|identical protein binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|RNA polymerase II transcription corepressor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)	3		Breast(348;0.000523)|Lung NSC(340;0.000992)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Lung SC(1967;0.113)		KIRC - Kidney renal clear cell carcinoma(1967;0.138)	Vorinostat(DB02546)	CGACTGTTTGAGAACCTTAGA	0.567000													10	67					0	0	0.000673444	0	0
BSDC1	55108	broad.mit.edu	37	1	32849465	32849465	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:32849465G>C	uc001bvh.3	-	4	370	c.323C>G	c.(322-324)CCG>CGG	p.P108R	BSDC1_uc010ohg.1_Missense_Mutation_p.P125R|BSDC1_uc010ohh.1_Intron|BSDC1_uc010ohi.1_Intron|BSDC1_uc001bvg.3_RNA|BSDC1_uc001bvj.2_Missense_Mutation_p.P4R|BSDC1_uc001bvi.2_Missense_Mutation_p.P125R	NM_018045	NP_060515	Q9NW68	BSDC1_HUMAN	BSD domain containing 1 isoform b	108							protein binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TGTGCCAGACGGTGTGCCCAT	0.522000													5	68					0	0	0.000602214	0	0
CSMD2	114784	broad.mit.edu	37	1	34209160	34209160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:34209160G>A	uc001bxn.1	-	14	1803	c.1774C>T	c.(1774-1776)CCC>TCC	p.P592S	CSMD2_uc001bxm.1_Missense_Mutation_p.P632S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	592	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGGTAGTTGGGAGACAGGACA	0.567000													18	50					0	0	0.00121646	0	0
GRIK3	2899	broad.mit.edu	37	1	37267467	37267467	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:37267467G>A	uc001caz.2	-	16	2880	c.2745C>T	c.(2743-2745)GCC>GCT	p.A915A		NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	915	Cytoplasmic (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GGAACACAGGGGCTAAGGATG	0.612000													9	25					0	0	0.000673444	0	0
MTF1	4520	broad.mit.edu	37	1	38288241	38288241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:38288241G>A	uc001cce.1	-	9	1460	c.1319C>T	c.(1318-1320)CCG>CTG	p.P440L	MTF1_uc009vvj.1_Missense_Mutation_p.P131L	NM_005955	NP_005946	Q14872	MTF1_HUMAN	metal-regulatory transcription factor 1	440	Pro-rich.					nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			ovary(1)|pancreas(1)	2	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				AGGAGCAGACGGAGCTGAGGC	0.587000													9	34					0	0	0.000673444	0	0
GJA9	81025	broad.mit.edu	37	1	39341319	39341319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:39341319C>T	uc001cct.1	-	2	733	c.452G>A	c.(451-453)GGA>GAA	p.G151E	RRAGC_uc001ccr.2_5'Flank|MYCBP_uc001ccs.2_5'Flank	NM_030772	NP_110399	P57773	CXA9_HUMAN	gap junction protein, alpha 9, 59kDa	151	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;8.23e-17)			AAGCAAGGTTCCTCTGAGTGG	0.428000													34	101					0	0	0.000409698	0	0
COL9A2	1298	broad.mit.edu	37	1	40775826	40775826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:40775826C>T	uc001cfh.1	-	15	819	c.749G>A	c.(748-750)GGA>GAA	p.G250E	COL9A2_uc001cfi.1_Missense_Mutation_p.G69E	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	250	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			GCCTTTATATCCATGAGGGCC	0.597000													8	45					0	0	0.000442599	0	0
TIE1	7075	broad.mit.edu	37	1	43779026	43779026	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:43779026C>T	uc001ciu.2	+	13	2227	c.2148C>T	c.(2146-2148)TTC>TTT	p.F716F	TIE1_uc010okd.1_Silent_p.F716F|TIE1_uc010oke.1_Silent_p.F671F|TIE1_uc009vwq.2_Silent_p.F672F|TIE1_uc010okf.1_Silent_p.F361F|TIE1_uc010okg.1_Silent_p.F361F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	716	Fibronectin type-III 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCTACCTCTTCCGCATGCGGG	0.652000													10	51					0	0	0.000673444	0	0
PTPRF	5792	broad.mit.edu	37	1	44056841	44056841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:44056841C>T	uc001cjr.2	+	9	1488	c.1148C>T	c.(1147-1149)TCG>TTG	p.S383L	PTPRF_uc001cjs.2_Missense_Mutation_p.S383L|PTPRF_uc001cju.2_5'UTR|PTPRF_uc009vwt.2_5'UTR|PTPRF_uc001cjv.2_5'UTR	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	383	Extracellular (Potential).|Fibronectin type-III 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGCCCTTTCTCGGAATATGCC	0.682000													8	44					0	0	0.000442599	0	0
CYP4A22	284541	broad.mit.edu	37	1	47610232	47610232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:47610232G>A	uc001cqv.1	+	8	959	c.908G>A	c.(907-909)GGG>GAG	p.G303E	CYP4A22_uc009vyo.2_Missense_Mutation_p.G303E|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	303						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						ATGGAGAATGGGAGCATCTTG	0.532000													8	72					0	0	0.000442599	0	0
SLC5A9	200010	broad.mit.edu	37	1	48695058	48695058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:48695058G>A	uc001cro.2	+	4	483	c.431G>A	c.(430-432)CGA>CAA	p.R144Q	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Missense_Mutation_p.R169Q|SLC5A9_uc010omt.1_Missense_Mutation_p.R158Q|SLC5A9_uc001crp.2_5'UTR|SLC5A9_uc010omu.1_5'UTR	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	144	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						CTGAAGAAGCGATTTGGGGGC	0.557000													12	35					0	0	0.000978159	0	0
PRKAA2	5563	broad.mit.edu	37	1	57171796	57171796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:57171796G>A	uc001cyk.3	+	8	1396	c.1325G>A	c.(1324-1326)AGA>AAA	p.R442K		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	442					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						CGTGTAAGAAGAAAAAATCCA	0.308000													7	51					0	0	0.000157383	0	0
FGGY	55277	broad.mit.edu	37	1	60073477	60073477	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:60073477C>T	uc001czi.3	+	9	1118	c.906C>T	c.(904-906)ATC>ATT	p.I302I	FGGY_uc001czg.2_Silent_p.I190I|FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Silent_p.I302I|FGGY_uc001czj.3_Silent_p.I301I|FGGY_uc001czk.3_Silent_p.I190I|FGGY_uc001czl.3_Silent_p.I214I|FGGY_uc001czm.3_Silent_p.I3I	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	302					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					CTTTCCAGATCAGCAAAGACC	0.393000													8	56					0	0	0.000157383	0	0
TNNI3K	51086	broad.mit.edu	37	1	74954902	74954902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:74954902G>A	uc001dgf.1	+	22	2202	c.2151G>A	c.(2149-2151)ATG>ATA	p.M717I	TNNI3K_uc001dge.1_Missense_Mutation_p.M818I	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	717	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						AAGTTGTCATGAAGTTAGAAG	0.363000													11	44					0	0	0.000673444	0	0
C1orf173	127254	broad.mit.edu	37	1	75037329	75037329	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:75037329C>T	uc001dgg.2	-	14	4284	c.4065G>A	c.(4063-4065)GAG>GAA	p.E1355E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1355	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTCCCTCTCCTCTGCGGCTG	0.522000													15	72					0	0	0.000958276	0	0
C1orf173	127254	broad.mit.edu	37	1	75037864	75037864	+	Missense_Mutation	SNP	C	T	T	rs10539747		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:75037864C>T	uc001dgg.2	-	14	3749	c.3530G>A	c.(3529-3531)GGA>GAA	p.G1177E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1177	Glu-rich.			Missing (in Ref. 1; CAD39076).						ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTCCCCTCCTCCTTCTTTCCT	0.493000													14	93					0	0	0.000219431	0	0
C1orf173	127254	broad.mit.edu	37	1	75038351	75038351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:75038351C>T	uc001dgg.2	-	14	3262	c.3043G>A	c.(3043-3045)GAA>AAA	p.E1015K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1015	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGGCTTCCTTCCTCAGGGCTG	0.512000													12	53					0	0	0.00136819	0	0
ACADM	34	broad.mit.edu	37	1	76198395	76198395	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:76198395C>G	uc001dgw.3	+	3	615	c.185C>G	c.(184-186)CCA>CGA	p.P62R	ACADM_uc010orc.1_Missense_Mutation_p.P62R|ACADM_uc010ord.1_5'UTR|ACADM_uc009wbp.2_Missense_Mutation_p.P66R|ACADM_uc009wbr.2_Missense_Mutation_p.P62R|ACADM_uc010ore.1_Missense_Mutation_p.P26R|ACADM_uc010orf.1_5'UTR|ACADM_uc001dgx.3_5'UTR|ACADM_uc010org.1_5'UTR	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	62					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						GAAATCATCCCAGTGGCTGCA	0.328000													4	99					0	0	0.000602214	0	0
GLMN	11146	broad.mit.edu	37	1	92754650	92754651	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:92754650_92754651CC>TT	uc001dor.2	-	6	567_568	c.452_453GG>AA	c.(451-453)TGG>TAA	p.W151*	GLMN_uc009wdg.2_RNA|GLMN_uc001dos.2_Nonsense_Mutation_p.W151*	NM_053274	NP_444504	Q92990	GLMN_HUMAN	glomulin	151					muscle cell differentiation|negative regulation of T cell proliferation|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of phosphorylation|regulation of gene expression, epigenetic|vasculogenesis	intracellular	hepatocyte growth factor receptor binding			skin(1)	1		all_lung(203;0.00827)|Lung NSC(277;0.0295)		all cancers(265;0.00702)|GBM - Glioblastoma multiforme(16;0.0381)|Epithelial(280;0.0989)		ATAGCTGATTCCAAAGGGTAGA	0.371000									Multiple_Glomus_Tumors_(of_the_Skin)_Familial				13	43					0	0	6.4e-05	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668167	94668167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:94668167C>T	uc001dqj.3	-	11	1445	c.1076G>A	c.(1075-1077)GGA>GAA	p.G359E	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.G359E	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	359	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTTGCTAATCCGCCACTTGA	0.373000													16	76					0	0	0.00074312	0	0
DPYD	1806	broad.mit.edu	37	1	97547999	97547999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:97547999G>A	uc001drv.2	-	22	2931	c.2794C>T	c.(2794-2796)CTT>TTT	p.L932F		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	932					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AATGTTCCAAGGTACTGCAGT	0.348000													11	67					0	0	0.000151284	0	0
CLCC1	23155	broad.mit.edu	37	1	109479864	109479865	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:109479864_109479865GG>TT	uc001dwe.1	-	10	1309_1310	c.1217_1218CC>AA	c.(1216-1218)CCC>CAA	p.P406Q	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.P406Q|CLCC1_uc001dwg.1_Missense_Mutation_p.P356Q|CLCC1_uc009wes.1_Missense_Mutation_p.P285Q|CLCC1_uc009wet.1_Missense_Mutation_p.P221Q	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	406						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CTTGCTCAGTGGGGCCCATTTG	0.500000													11	423					0	0	6.4e-05	0	0
FAM40A	85369	broad.mit.edu	37	1	110596512	110596512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:110596512C>T	uc001dza.1	+	21	2511	c.2492C>T	c.(2491-2493)TCC>TTC	p.S831F	FAM40A_uc001dyz.1_Missense_Mutation_p.S736F|FAM40A_uc009wfp.1_Missense_Mutation_p.S655F	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	831						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		AAGCCCATTTCCTGGGAAGAG	0.527000											OREG0013647	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	52					0	0	0.000978159	0	0
PTPN22	26191	broad.mit.edu	37	1	114380244	114380244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:114380244G>A	uc001eds.2	-	13	1908	c.1778C>T	c.(1777-1779)TCC>TTC	p.S593F	PTPN22_uc009wgq.2_Missense_Mutation_p.S538F|PTPN22_uc010owo.1_Missense_Mutation_p.S349F|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.S593F|PTPN22_uc009wgs.2_Missense_Mutation_p.S466F|PTPN22_uc001edu.2_Missense_Mutation_p.S593F	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	593					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAATAGTGAGGAAATATTGGT	0.323000													7	58					0	0	0.000157383	0	0
NBPF7	343505	broad.mit.edu	37	1	120382883	120382884	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:120382883_120382884GG>TT	uc010oxk.1	-	4	1243_1244	c.622_623CC>AA	c.(622-624)CCC>AAC	p.P208N		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	208	NBPF 1.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		GTCTTACCTGGGAGCAGGTGAT	0.401000													9	304					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120437782	120437783	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:120437782_120437783GG>TT	uc001eij.2	-	1	1331_1332	c.1177_1178CC>AA	c.(1177-1179)CCA>AAA	p.P393K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	393	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ACCTAGTCCTGGGATATTATTT	0.411000													14	510					0	0	6.4e-05	0	0
ANKRD35	148741	broad.mit.edu	37	1	145561548	145561548	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:145561548C>T	uc001eob.1	+	10	1344	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.I255I	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	412										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAGGAAAGATCCAGTATGAAG	0.532000													25	46					0	0	0.00047179	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151204807	151204807	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:151204807G>C	uc001exj.2	+	6	904	c.452G>C	c.(451-453)CGG>CCG	p.R151P	PIP5K1A_uc001exi.2_Missense_Mutation_p.R138P|PIP5K1A_uc010pcu.1_Missense_Mutation_p.R139P|PIP5K1A_uc001exk.2_Missense_Mutation_p.R138P|PIP5K1A_uc010pcv.1_5'Flank	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	151	PIPK.				phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			CGCTACTTCCGGGAGCTATTT	0.502000													4	137					0	0	8.12818e-05	0	0
CGN	57530	broad.mit.edu	37	1	151506472	151506472	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:151506472C>T	uc009wmw.2	+	15	2908	c.2764C>T	c.(2764-2766)CTG>TTG	p.L922L	CGN_uc010pde.1_5'Flank	NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	916	Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCGGCAGGCCCTGCAGGCATC	0.627000													7	32					0	0	0.000157383	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059676	152059676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:152059676C>T	uc001ezo.1	-	3	547	c.482G>A	c.(481-483)AGA>AAA	p.R161K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	161							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTTGGCTTCTCTCCATGGGTC	0.453000													14	55					0	0	0.000308642	0	0
HRNR	388697	broad.mit.edu	37	1	152188265	152188266	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:152188265_152188266GG>AA	uc001ezt.1	-	3	5915_5916	c.5839_5840CC>TT	c.(5839-5841)CCT>TTT	p.P1947F		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1947	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTAGGGCTAGGAGACTGGCCA	0.604000													9	269					0	0	6.4e-05	0	0
HRNR	388697	broad.mit.edu	37	1	152188491	152188491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:152188491C>T	uc001ezt.1	-	3	5690	c.5614G>A	c.(5614-5616)GGT>AGT	p.G1872S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1872	20.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCATGGTGACCAAATCCAGAA	0.572000													46	528					0	0	0.000781405	0	0
FLG2	388698	broad.mit.edu	37	1	152328532	152328532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:152328532G>A	uc001ezw.3	-	3	1803	c.1730C>T	c.(1729-1731)TCC>TTC	p.S577F	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	577	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAAGCCAGTGGATTGACCTGA	0.522000													41	114					0	0	0.00170553	0	0
S100A16	140576	broad.mit.edu	37	1	153580154	153580154	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:153580154C>T	uc001fcc.2	-	3	301	c.168G>A	c.(166-168)CGG>CGA	p.R56R	S100A16_uc001fcd.1_Silent_p.R56R	NM_080388	NP_525127	Q96FQ6	S10AG_HUMAN	S100 calcium binding protein A16	56	EF-hand 2.					cytosol|nucleolus	calcium ion binding|protein homodimerization activity				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCGCAGCCTTCCGGTTCCCTG	0.592000													7	27					0	0	0.000157383	0	0
TPM3	7170	broad.mit.edu	37	1	154164395	154164395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:154164395C>T	uc001fec.1	-	1	215	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_152263	NP_689476	P06753	TPM3_HUMAN	tropomyosin 3 isoform 1	33	By similarity.				cellular component movement|muscle filament sliding|regulation of muscle contraction	cytosol|muscle thin filament tropomyosin|stress fiber	actin binding		TPM3/ALK(33)	haematopoietic_and_lymphoid_tissue(22)|soft_tissue(11)|skin(1)	34	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)					CTTCTTTCTTCTGCCTGCTTC	0.468000			T	NTRK1|ALK	papillary thyroid|ALCL								41	108					0	0	0.000781405	0	0
HCN3	57657	broad.mit.edu	37	1	155257825	155257825	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:155257825C>T	uc001fjz.1	+	8	1904	c.1896C>T	c.(1894-1896)CCC>CCT	p.P632P	RAG1AP1_uc010pey.1_Intron|HCN3_uc010pfz.1_Silent_p.P327P	NM_020897	NP_065948	Q9P1Z3	HCN3_HUMAN	hyperpolarization activated cyclic	632	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)|breast(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GCCCTCTGCCCCTCTCCCCTG	0.662000													5	18					0	0	0.00116845	0	0
RHBG	57127	broad.mit.edu	37	1	156351917	156351917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:156351917G>A	uc010pho.1	+	7	1075	c.1037G>A	c.(1036-1038)GGG>GAG	p.G346E	RHBG_uc010phm.1_Missense_Mutation_p.G179R|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.G277E|RHBG_uc009wrz.2_Missense_Mutation_p.G314E|RHBG_uc001for.2_Missense_Mutation_p.G316E	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	346	Cytoplasmic (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					AACCTCCATGGGATGCCGGGG	0.577000													28	86					0	0	0.00178596	0	0
FCRL5	83416	broad.mit.edu	37	1	157494336	157494336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:157494336G>A	uc001fqu.2	-	10	2130	c.1972C>T	c.(1972-1974)CGT>TGT	p.R658C	FCRL5_uc009wsm.2_Missense_Mutation_p.R658C|FCRL5_uc010phv.1_Missense_Mutation_p.R658C|FCRL5_uc010phw.1_Missense_Mutation_p.R573C	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	658	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				AGGATGGGACGAGATACTGGA	0.502000													11	30					0	0	0.00136819	0	0
FCRL5	83416	broad.mit.edu	37	1	157504474	157504474	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:157504474C>T	uc001fqu.2	-	8	1769	c.1611G>A	c.(1609-1611)GGG>GGA	p.G537G	FCRL5_uc009wsm.2_Silent_p.G537G|FCRL5_uc010phv.1_Silent_p.G537G|FCRL5_uc010phw.1_Silent_p.G452G|FCRL5_uc001fqv.1_Silent_p.G537G|FCRL5_uc010phx.1_Silent_p.G288G	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	537	Extracellular (Potential).|Ig-like C2-type 5.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				AGTAGTAATTCCCTGAATGTC	0.512000													8	21					0	0	0.000274275	0	0
FCRL5	83416	broad.mit.edu	37	1	157514175	157514175	+	Missense_Mutation	SNP	G	A	A	rs138414681		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:157514175G>A	uc001fqu.2	-	5	879	c.721C>T	c.(721-723)CTC>TTC	p.L241F	FCRL5_uc009wsm.2_Missense_Mutation_p.L241F|FCRL5_uc010phv.1_Missense_Mutation_p.L241F|FCRL5_uc010phw.1_Missense_Mutation_p.L156F|FCRL5_uc001fqv.1_Missense_Mutation_p.L241F|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	241	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				TTCGGGGAGAGACTCCAGCCT	0.532000													19	84					0	0	0.00121646	0	0
SLAMF8	56833	broad.mit.edu	37	1	159802950	159802950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:159802950G>A	uc001fue.3	+	3	862	c.652G>A	c.(652-654)GAT>AAT	p.D218N		NM_020125	NP_064510	Q9P0V8	SLAF8_HUMAN	SLAM family member 8 precursor	218	Extracellular (Potential).					integral to membrane					0	all_hematologic(112;0.0597)					CACGCCCTGGGATAGCTGTCA	0.557000													12	47					0	0	0.000978159	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161018272	161018272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:161018272C>T	uc001fxl.2	-	12	2885	c.2539G>A	c.(2539-2541)GGA>AGA	p.G847R	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Intron|ARHGAP30_uc001fxm.2_Missense_Mutation_p.G693R|ARHGAP30_uc009wtx.2_Missense_Mutation_p.G520R	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	847	Glu-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			CTCTGGTCTCCCTCAGCCTCT	0.572000													32	112					0	0	0.000814825	0	0
PPOX	5498	broad.mit.edu	37	1	161137200	161137200	+	Silent	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:161137200C>A	uc001fyj.2	+	4	552	c.262C>A	c.(262-264)CGG>AGG	p.R88R	PPOX_uc001fyn.2_Intron|PPOX_uc001fyg.2_Silent_p.R88R|PPOX_uc001fyl.2_Silent_p.R54R|PPOX_uc001fym.2_RNA|PPOX_uc001fyk.2_5'UTR|PPOX_uc001fyh.2_5'UTR|PPOX_uc010pkg.1_5'UTR|PPOX_uc009wuc.1_5'UTR|PPOX_uc010pkh.1_Intron|PPOX_uc001fyi.2_5'UTR	NM_001122764	NP_001116236	P50336	PPOX_HUMAN	protoporphyrinogen oxidase	88					heme biosynthetic process	intrinsic to mitochondrial inner membrane|mitochondrial intermembrane space	flavin adenine dinucleotide binding|oxygen-dependent protoporphyrinogen oxidase activity			ovary(1)	1	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GCTGCCTGTCCGGGGAGACCA	0.577000									Porphyria_Variegata				13	39					2.23348e-06	1.31818e-05	0.000422831	1	0
NR1I3	9970	broad.mit.edu	37	1	161200969	161200969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:161200969C>T	uc001fzx.2	-	7	964	c.761G>A	c.(760-762)CGA>CAA	p.R254Q	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.R250Q|NR1I3_uc001fzg.2_Missense_Mutation_p.R221Q|NR1I3_uc001fzh.2_Missense_Mutation_p.R221Q|NR1I3_uc001fzi.2_Missense_Mutation_p.R221Q|NR1I3_uc001fzj.2_Missense_Mutation_p.R221Q|NR1I3_uc001fzk.2_Intron|NR1I3_uc001fzl.2_Intron|NR1I3_uc001fzm.2_Missense_Mutation_p.R175Q|NR1I3_uc001fzn.2_Intron|NR1I3_uc009wug.2_Missense_Mutation_p.R83Q|NR1I3_uc001fzp.2_Missense_Mutation_p.R254Q|NR1I3_uc001fzo.2_Missense_Mutation_p.R83Q|NR1I3_uc001fzq.2_Intron|NR1I3_uc001fzr.2_Intron|NR1I3_uc001fzs.2_Intron|NR1I3_uc001fzt.2_Intron|NR1I3_uc001fzu.2_Intron|NR1I3_uc001fzv.2_Intron|NR1I3_uc001fzw.2_Missense_Mutation_p.R254Q|NR1I3_uc001fzy.2_Missense_Mutation_p.R250Q|NR1I3_uc001fzz.2_Intron|NR1I3_uc001gaa.2_Intron|NR1I3_uc001gab.2_Intron|NR1I3_uc001gac.2_Missense_Mutation_p.R225Q|NR1I3_uc010pkm.1_Missense_Mutation_p.R221Q|NR1I3_uc010pkn.1_3'UTR	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	254					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CTGCAGTTTTCGTAGTGTTCC	0.532000													12	24					0	0	0.000151284	0	0
C1orf111	284680	broad.mit.edu	37	1	162344318	162344318	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:162344318G>A	uc001gbx.2	-	3	370	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_182581	NP_872387	Q5T0L3	CA111_HUMAN	hypothetical protein LOC284680	102										ovary(1)	1	all_hematologic(112;0.15)		BRCA - Breast invasive adenocarcinoma(70;0.0938)			CTGCACACACGAAGTAGCTGT	0.572000													23	103					0	0	0.00047179	0	0
DUSP27	92235	broad.mit.edu	37	1	167097058	167097058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:167097058G>A	uc001geb.1	+	5	2690	c.2690G>A	c.(2689-2691)CGA>CAA	p.R897Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	897	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGGAGCTTCCGATATTCTTCC	0.507000													16	27					0	0	0.000308642	0	0
CD247	919	broad.mit.edu	37	1	167407878	167407878	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:167407878G>A	uc001gei.3	-	4	374	c.229C>T	c.(229-231)CTA>TTA	p.L77L	CD247_uc001gej.3_Silent_p.L77L|CD247_uc001gek.2_Silent_p.L77L	NM_198053	NP_932170	P20963	CD3Z_HUMAN	T-cell receptor zeta chain isoform 1 precursor	77	Cytoplasmic (Potential).|ITAM 1.				interspecies interaction between organisms|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytoplasm|integral to membrane	protein homodimerization activity|transmembrane receptor activity				0			LUSC - Lung squamous cell carcinoma(543;0.236)			CTTCGTCCTAGATTGAGCTCC	0.542000													24	97					0	0	0.00047179	0	0
TNN	63923	broad.mit.edu	37	1	175052918	175052918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:175052918G>A	uc001gkl.1	+	5	1194	c.1081G>A	c.(1081-1083)GAT>AAT	p.D361N	TNN_uc010pmx.1_Missense_Mutation_p.D361N	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	361	Fibronectin type-III 2.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CTGGGTGACAGATGAGACTGA	0.562000													10	28					0	0	0.000673444	0	0
TNR	7143	broad.mit.edu	37	1	175375497	175375497	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:175375497G>A	uc001gkp.1	-	1	435	c.354C>T	c.(352-354)ATC>ATT	p.I118I	TNR_uc009wwu.1_Silent_p.I118I|TNR_uc010pmz.1_Silent_p.I118I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	118					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TGGGGAAGTTGATCCTGTGTG	0.592000													17	54					0	0	0.000958276	0	0
RGS8	85397	broad.mit.edu	37	1	182635159	182635159	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:182635159C>T	uc010pnw.1	-	5	396	c.138G>A	c.(136-138)TCG>TCA	p.S46S	RGS8_uc001gpn.1_Silent_p.S46S|RGS8_uc001gpm.1_Silent_p.S64S	NM_001102450	NP_001095920	P57771	RGS8_HUMAN	regulator of G-protein signalling 8 isoform 2	46					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)	1						CTTCTTCTGTCGATAATCTCC	0.388000													26	100					0	0	0.000586117	0	0
HMCN1	83872	broad.mit.edu	37	1	186045683	186045683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:186045683C>T	uc001grq.1	+	54	8643	c.8414C>T	c.(8413-8415)CCC>CTC	p.P2805L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2805	Ig-like C2-type 26.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AATGCTGCTCCCCCTCCTACA	0.433000													9	31					0	0	0.000673444	0	0
PRG4	10216	broad.mit.edu	37	1	186276033	186276033	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:186276033G>A	uc001gru.3	+	7	1233	c.1182G>A	c.(1180-1182)AAG>AAA	p.K394K	PRG4_uc001grt.3_Silent_p.K353K|PRG4_uc009wyl.2_Silent_p.K301K|PRG4_uc009wym.2_Silent_p.K260K|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	394	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|7.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCACTCCCAAGGAGCCTGCAC	0.642000													19	54					0	0	0.00121646	0	0
CFHR1	3078	broad.mit.edu	37	1	196801091	196801091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:196801091G>A	uc001gtn.2	+	6	1069	c.955G>A	c.(955-957)GAT>AAT	p.D319N	CFHR1_uc001gtm.2_Missense_Mutation_p.D223N	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	319	Sushi 5.				complement activation	extracellular space					0						AACATGTTGGGATGGGAAACT	0.358000													24	50					0	0	0.00127121	0	0
KIF14	9928	broad.mit.edu	37	1	200586866	200586866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:200586866G>A	uc010ppk.1	-	2	1425	c.986C>T	c.(985-987)TCC>TTC	p.S329F	KIF14_uc010ppj.1_5'UTR	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	329	Required for PRC1-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						ATTTTCTGCGGATCTTTCCTG	0.388000													22	48					0	0	0.000229342	0	0
OPTC	26254	broad.mit.edu	37	1	203465257	203465257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:203465257G>A	uc001gzu.1	+	2	240	c.124G>A	c.(124-126)GAA>AAA	p.E42K		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	42						proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			CGATTCCTTTGAAGTTCTGCC	0.532000													12	20					0	0	0.000151284	0	0
NFASC	23114	broad.mit.edu	37	1	204942512	204942512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:204942512G>A	uc001hbj.2	+	12	1572	c.1244G>A	c.(1243-1245)GGC>GAC	p.G415D	NFASC_uc001hbh.2_Missense_Mutation_p.G415D|NFASC_uc010pqz.1_Missense_Mutation_p.G409D|NFASC_uc010pra.1_Missense_Mutation_p.G426D|NFASC_uc001hbi.2_Missense_Mutation_p.G426D|NFASC_uc009xbg.1_Missense_Mutation_p.G499D|NFASC_uc010prb.1_Missense_Mutation_p.G426D|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.G236D	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	415	Extracellular (Potential).|Ig-like C2-type 4.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AACGAGCATGGCTACCTGCTG	0.607000													4	16					0	0	0.00024832	0	0
CR1	1378	broad.mit.edu	37	1	207787797	207787797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:207787797G>A	uc001hfy.2	+	32	5414	c.5274G>A	c.(5272-5274)ATG>ATA	p.M1758I	CR1_uc001hfx.2_Missense_Mutation_p.M2208I	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1758	Extracellular (Potential).|Sushi 27.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TGGCTGGAATGAAAGCCCTTT	0.408000													19	26					0	0	0.000229342	0	0
CAMK1G	57172	broad.mit.edu	37	1	209773330	209773330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:209773330G>A	uc001hhd.2	+	3	197	c.95G>A	c.(94-96)GGA>GAA	p.G32E	CAMK1G_uc001hhf.3_Missense_Mutation_p.G32E|CAMK1G_uc001hhe.2_Missense_Mutation_p.G32E	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	32	Protein kinase.|ATP (By similarity).					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CTCCTCAGAGGAGCTTTCTCA	0.353000													17	25					0	0	0.000566183	0	0
C1orf74	148304	broad.mit.edu	37	1	209956442	209956442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:209956442G>A	uc001hhp.1	-	2	781	c.538C>T	c.(538-540)CCT>TCT	p.P180S		NM_152485	NP_689698	Q96LT6	CA074_HUMAN	hypothetical protein LOC148304	180										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0328)		TAGGGAACAGGATAGCCCAGG	0.517000													23	40					0	0	0.000878237	0	0
JMJD4	65094	broad.mit.edu	37	1	227920604	227920604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:227920604G>A	uc001hrb.2	-	5	1085	c.1085C>T	c.(1084-1086)CCC>CTC	p.P362L	SNAP47_uc001hqz.2_Intron|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_5'Flank|SNAP47_uc001hre.2_5'Flank|SNAP47_uc001hrf.2_5'Flank|LOC100130093_uc001hqx.3_RNA|LOC100130093_uc001hqy.3_RNA|JMJD4_uc001hrc.2_Intron	NM_023007	NP_075383	Q9H9V9	JMJD4_HUMAN	jumonji domain containing 4 isoform 1	362											0		Prostate(94;0.0885)				GTGCCAGTCGGGCATGGAGTC	0.627000													10	33					0	0	0.000442599	0	0
CEP170	9859	broad.mit.edu	37	1	243329328	243329328	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:243329328A>T	uc001hzs.2	-	13	2342	c.1934T>A	c.(1933-1935)CTT>CAT	p.L645H	CEP170_uc001hzt.2_Missense_Mutation_p.L547H|CEP170_uc001hzu.2_Missense_Mutation_p.L547H|CEP170_uc001hzv.1_Missense_Mutation_p.L23H	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	645						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			AAGCTGGGGAAGAGTTCGTCT	0.463000													4	10					0	0	0.00024832	0	0
OR2B11	127623	broad.mit.edu	37	1	247614572	247614572	+	Missense_Mutation	SNP	C	T	T	rs149924080		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:247614572C>T	uc010pyx.1	-	1	713	c.713G>A	c.(712-714)CGA>CAA	p.R238Q		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	238	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			GGCCTTGTGTCGTCCCTTGGA	0.567000													15	35					0	0	0.000308642	0	0
OR2C3	81472	broad.mit.edu	37	1	247695301	247695301	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:247695301C>T	uc009xgy.2	-	2	875	c.513G>A	c.(511-513)GGG>GGA	p.G171G	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	171	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TGCAATTGTTCCCACACAGCG	0.562000													6	15					0	0	8.12818e-05	0	0
OR2G2	81470	broad.mit.edu	37	1	247752457	247752457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:247752457G>A	uc010pyy.1	+	1	796	c.796G>A	c.(796-798)GCC>ACC	p.A266T		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			tctgcagCCAGCCAAGAGTAG	0.383000													22	45					0	0	0.000229342	0	0
OR14A16	284532	broad.mit.edu	37	1	247978629	247978629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:247978629C>T	uc001idm.1	-	1	403	c.403G>A	c.(403-405)GAC>AAC	p.D135N		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	135	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGCTCCTGTCCATGATGACA	0.517000													14	37					0	0	0.000566183	0	0
OR2T1	26696	broad.mit.edu	37	1	248569717	248569717	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:248569717C>T	uc010pzm.1	+	1	422	c.422C>T	c.(421-423)ACC>ATC	p.T141I		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	141	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATCAAAGGACCATTTCCTTT	0.478000													17	31					0	0	0.000566183	0	0
OR2G6	391211	broad.mit.edu	37	1	248685258	248685258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:248685258C>T	uc001ien.1	+	1	311	c.311C>T	c.(310-312)GCC>GTC	p.A104V		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCTATGTGGCCATGGGGTTG	0.532000													22	51					0	0	0.00047179	0	0
OR2G6	391211	broad.mit.edu	37	1	248685416	248685416	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:248685416C>T	uc001ien.1	+	1	469	c.469C>T	c.(469-471)CTA>TTA	p.L157L		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATCACCTCCCTAATTCAGTG	0.577000													5	22					0	0	0.00116845	0	0
OR14I1	401994	broad.mit.edu	37	1	248845033	248845033	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:248845033G>A	uc001ieu.1	-	1	573	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	191	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACTCTACAAAGAAAACCTCAC	0.483000													6	29					0	0	8.12818e-05	0	0
AKR1C4	1109	broad.mit.edu	37	10	5238875	5238875	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:5238875C>T	uc001ihw.2	+	1	78	c.45C>T	c.(43-45)TTC>TTT	p.F15F		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	15	NADP (By similarity).				androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	ATGGTCACTTCATGCCCGTAT	0.418000													9	50					0	0	0.000673444	0	0
DHTKD1	55526	broad.mit.edu	37	10	12159748	12159748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:12159748C>T	uc001ild.3	+	14	2495	c.2396C>T	c.(2395-2397)CCA>CTA	p.P799L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	799					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			TCTGTGGATCCAAAAAAGTAA	0.408000													35	236					0	0	0.000953801	0	0
NUDT5	11164	broad.mit.edu	37	10	12228331	12228332	+	Splice_Site	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:12228331_12228332CC>AA	uc001ilj.2	-	2	376	c.-40_splice	c.e2-1		NUDT5_uc001ilk.2_Splice_Site	NM_014142	NP_054861	Q9UKK9	NUDT5_HUMAN	nudix-type motif 5						D-ribose catabolic process|ribonucleoside diphosphate catabolic process	intracellular	ADP-ribose diphosphatase activity|magnesium ion binding			ovary(1)|pancreas(1)	2		Renal(717;0.228)				AGAAGTTCACCCTGCAAGATAA	0.381000													9	250					0	0	6.4e-05	0	0
CAMK1D	57118	broad.mit.edu	37	10	12870825	12870825	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:12870825T>C	uc001ilo.2	+	11	1332	c.1097T>C	c.(1096-1098)GTT>GCT	p.V366A		NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	366						calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		GTCTCAGGAGTTGGAGCCGAG	0.612000													19	121					0	0	0.00047179	0	0
BEND7	222389	broad.mit.edu	37	10	13481408	13481408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:13481408C>T	uc001imm.2	-	9	1468	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	BEND7_uc001iml.2_RNA	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	442							protein binding			ovary(1)|breast(1)	2						TGTCCCTTTTCTTGTGACATT	0.547000													6	30					0	0	0.000157383	0	0
OLAH	55301	broad.mit.edu	37	10	15115166	15115166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:15115166G>A	uc001inu.2	+	8	990	c.736G>A	c.(736-738)GAG>AAG	p.E246K	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.E299K	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	246					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						TCCTGCGAACGAGAAATTAAT	0.328000													10	43					0	0	0.000978159	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256417	15256417	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:15256417C>T	uc001iob.2	-	8	1177	c.1170G>A	c.(1168-1170)ACG>ACA	p.T390T		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	390	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TCAGTTCCTTCGTGCCGGGGG	0.617000													11	47					0	0	0.000673444	0	0
THNSL1	79896	broad.mit.edu	37	10	25314260	25314260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:25314260C>T	uc001isi.3	+	3	2437	c.2108C>T	c.(2107-2109)CCA>CTA	p.P703L	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	703					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	GCATTACCTCCACTGCATGAG	0.403000													8	33					0	0	0.000157383	0	0
ARMC4	55130	broad.mit.edu	37	10	28260161	28260161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:28260161G>A	uc009xky.2	-	8	1116	c.1018C>T	c.(1018-1020)CGC>TGC	p.R340C	ARMC4_uc010qds.1_Intron|ARMC4_uc010qdt.1_Missense_Mutation_p.R32C|ARMC4_uc001itz.2_Missense_Mutation_p.R340C|ARMC4_uc010qdu.1_Missense_Mutation_p.R32C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	340							binding			ovary(4)|skin(2)	6						ATGTCTTTGCGGAGGGCAGCT	0.418000													10	30					0	0	0.000978159	0	0
SVIL	6840	broad.mit.edu	37	10	29813491	29813491	+	Silent	SNP	C	T	T	rs113842540	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:29813491C>T	uc001iut.1	-	14	3249	c.2496G>A	c.(2494-2496)GCG>GCA	p.A832A	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Silent_p.A406A	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	832					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GGGTAGAAATCGCTTTTGAGA	0.507000													11	67					0	0	0.000673444	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32150514	32150514	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:32150514G>A	uc001ivz.1	-	4	1027	c.757C>T	c.(757-759)CAG>TAG	p.Q253*	ARHGAP12_uc001ivy.1_Nonsense_Mutation_p.Q251*|ARHGAP12_uc009xls.2_Nonsense_Mutation_p.Q251*|ARHGAP12_uc001iwb.1_Nonsense_Mutation_p.Q251*|ARHGAP12_uc001iwc.1_Nonsense_Mutation_p.Q251*|ARHGAP12_uc009xlq.1_Nonsense_Mutation_p.Q251*|ARHGAP12_uc001iwd.1_Nonsense_Mutation_p.Q251*|ARHGAP12_uc009xlr.1_Nonsense_Mutation_p.Q251*	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	253					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				AGAGCAGACTGGGATATTTTC	0.428000													9	40					0	0	0.000274275	0	0
NRP1	8829	broad.mit.edu	37	10	33475384	33475384	+	Missense_Mutation	SNP	C	T	T	rs139081795		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:33475384C>T	uc001iwx.3	-	14	2618	c.2095G>A	c.(2095-2097)GAA>AAA	p.E699K	NRP1_uc001iwv.3_Missense_Mutation_p.E699K|NRP1_uc009xlz.2_Missense_Mutation_p.E693K|NRP1_uc001iww.3_Missense_Mutation_p.E511K|NRP1_uc001iwy.3_Missense_Mutation_p.E692K	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	699	Extracellular (Potential).|MAM.				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTCTGATTTTCGTCAGCTTGG	0.493000													7	47					0	0	0.000157383	0	0
RET	5979	broad.mit.edu	37	10	43619124	43619124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:43619124C>T	uc001jal.2	+	17	2997	c.2807C>T	c.(2806-2808)TCT>TTT	p.S936F	RET_uc001jak.1_Missense_Mutation_p.S936F|RET_uc010qez.1_Missense_Mutation_p.S682F	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	936	Protein kinase.|Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	TGCAGATGGTCTTTTGGTGTC	0.617000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				10	81					0	0	0.00136819	0	0
ZNF239	8187	broad.mit.edu	37	10	44052942	44052942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:44052942G>A	uc001jaw.3	-	2	1239	c.586C>T	c.(586-588)CCA>TCA	p.P196S	ZNF239_uc001jax.3_Missense_Mutation_p.P196S|ZNF239_uc009xmj.2_Missense_Mutation_p.P196S|ZNF239_uc009xmk.2_Missense_Mutation_p.P196S	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TTCTCATATGGATGACCATCT	0.438000													13	35					0	0	0.000151284	0	0
ZNF239	8187	broad.mit.edu	37	10	44053196	44053196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:44053196C>T	uc001jaw.3	-	2	985	c.332G>A	c.(331-333)AGT>AAT	p.S111N	ZNF239_uc001jax.3_Missense_Mutation_p.S111N|ZNF239_uc009xmj.2_Missense_Mutation_p.S111N|ZNF239_uc009xmk.2_Missense_Mutation_p.S111N	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						CTCTGAACAACTTTCCCCCTT	0.433000													22	66					0	0	0.000229342	0	0
SGMS1	259230	broad.mit.edu	37	10	52067882	52067882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:52067882G>A	uc001jje.2	-	10	1876	c.922C>T	c.(922-924)CAC>TAC	p.H308Y	SGMS1_uc010qhk.1_Missense_Mutation_p.H139Y	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	314	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						CAAATCCAGTGATACCACCAG	0.473000													6	27					0	0	0.00116845	0	0
SGMS1	259230	broad.mit.edu	37	10	52103419	52103419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:52103419C>T	uc001jje.2	-	7	1410	c.456G>A	c.(454-456)ATG>ATA	p.M152I	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.M152I|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	158	Helical; (Potential).				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						CGACCGAGATCATCACTGTGG	0.517000													8	32					0	0	0.000157383	0	0
A1CF	29974	broad.mit.edu	37	10	52619618	52619618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:52619618C>T	uc001jjj.2	-	3	271	c.83G>A	c.(82-84)GGA>GAA	p.G28E	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Missense_Mutation_p.G28E|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Missense_Mutation_p.G28E|A1CF_uc001jjk.1_Missense_Mutation_p.G28E	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	28					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CAAGCTATATCCTGTGCGCTG	0.498000													5	23					0	0	8.12818e-05	0	0
PCDH15	65217	broad.mit.edu	37	10	55583112	55583112	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:55583112G>A	uc001jju.1	-	33	4769	c.4374C>T	c.(4372-4374)TTC>TTT	p.F1458F	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.F1455F|PCDH15_uc010qhw.1_Silent_p.F1418F|PCDH15_uc010qhx.1_Silent_p.F1389F|PCDH15_uc010qhy.1_Silent_p.F1465F|PCDH15_uc010qhz.1_Silent_p.F1460F|PCDH15_uc010qia.1_Silent_p.F1438F|PCDH15_uc010qib.1_Silent_p.F1435F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1458	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GGTAGAGAAGGAAAAGACTTG	0.348000										HNSCC(58;0.16)			10	52					0	0	0.000673444	0	0
PCDH15	65217	broad.mit.edu	37	10	55587287	55587287	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:55587287C>A	uc001jju.1	-	32	4628	c.4233G>T	c.(4231-4233)AAG>AAT	p.K1411N	PCDH15_uc010qhq.1_Missense_Mutation_p.K1416N|PCDH15_uc010qhr.1_Missense_Mutation_p.K1411N|PCDH15_uc010qhs.1_Missense_Mutation_p.K1423N|PCDH15_uc010qht.1_Missense_Mutation_p.K1418N|PCDH15_uc010qhu.1_Missense_Mutation_p.K1411N|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.K1408N|PCDH15_uc010qhw.1_Missense_Mutation_p.K1371N|PCDH15_uc010qhx.1_Missense_Mutation_p.K1340N|PCDH15_uc010qhy.1_Missense_Mutation_p.K1416N|PCDH15_uc010qhz.1_Missense_Mutation_p.K1411N|PCDH15_uc010qia.1_Missense_Mutation_p.K1389N|PCDH15_uc010qib.1_Missense_Mutation_p.K1386N	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1411	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCGTGCAGTCTTTGTACACT	0.393000										HNSCC(58;0.16)			17	65					5.03518e-11	2.98862e-10	0.000958276	1	0
FAM13C	220965	broad.mit.edu	37	10	61062601	61062601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:61062601G>A	uc001jkn.2	-	6	601	c.467C>T	c.(466-468)TCG>TTG	p.S156L	FAM13C_uc001jko.2_Missense_Mutation_p.S156L|FAM13C_uc010qid.1_Missense_Mutation_p.S73L|FAM13C_uc010qie.1_Missense_Mutation_p.S73L|FAM13C_uc010qif.1_Missense_Mutation_p.S178L|FAM13C_uc001jkp.2_Missense_Mutation_p.S73L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	156										ovary(2)	2						ATCCTTTGGCGAAATGGCAGT	0.353000													10	102					0	0	0.00136819	0	0
SLC16A9	220963	broad.mit.edu	37	10	61413579	61413579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:61413579G>A	uc010qig.1	-	5	1654	c.1205C>T	c.(1204-1206)TCT>TTT	p.S402F		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	402	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						TAGGATCCCAGAAAGCAACGC	0.408000													10	50					0	0	0.000978159	0	0
ANK3	288	broad.mit.edu	37	10	61834170	61834170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:61834170G>A	uc001jky.2	-	37	6661	c.6469C>T	c.(6469-6471)CCC>TCC	p.P2157S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2157					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGAGGGATGGGAACTTCATGA	0.478000													12	53					0	0	0.000422831	0	0
ANK3	288	broad.mit.edu	37	10	61835456	61835456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:61835456G>A	uc001jky.2	-	37	5375	c.5183C>T	c.(5182-5184)TCC>TTC	p.S1728F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1728	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TAAAGTTGAGGATGATGGATA	0.438000													4	31					0	0	0.000602214	0	0
LRRTM3	347731	broad.mit.edu	37	10	68857444	68857444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:68857444G>A	uc001jmz.1	+	3	2186	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	546	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TAAGTCCTTTGAAACGAATGC	0.458000													5	25					0	0	0.000602214	0	0
VPS26A	9559	broad.mit.edu	37	10	70916813	70916813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:70916813G>A	uc001jpb.2	+	4	406	c.280G>A	c.(280-282)GAA>AAA	p.E94K	VPS26A_uc001jpc.2_Missense_Mutation_p.E94K|VPS26A_uc009xqa.2_Missense_Mutation_p.E87K|VPS26A_uc001jpd.2_5'UTR	NM_004896	NP_004887	O75436	VP26A_HUMAN	vacuolar protein sorting 26 A isoform 1	94					retrograde transport, endosome to Golgi|vacuolar transport	cytosol|endosome membrane|retromer complex|vesicle	protein binding|protein transporter activity				0						CCTAGTGAAAGAACTAGCCTT	0.338000													7	43					0	0	0.000157383	0	0
NEUROG3	50674	broad.mit.edu	37	10	71332748	71332748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:71332748C>T	uc001jpp.2	-	2	210	c.52G>A	c.(52-54)GAG>AAG	p.E18K		NM_020999	NP_066279	Q9Y4Z2	NGN3_HUMAN	neurogenin 3	18					central nervous system development|endocrine pancreas development|peripheral nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	transcription coactivator activity				0						AAGGACCGCTCCGTCTCACGG	0.672000													13	51					0	0	0.000151284	0	0
CDH23	64072	broad.mit.edu	37	10	73562739	73562739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:73562739C>T	uc001jrx.3	+	52	7944	c.7567C>T	c.(7567-7569)CCG>TCG	p.P2523S	CDH23_uc001jsg.3_Missense_Mutation_p.P283S|CDH23_uc001jsh.3_Missense_Mutation_p.P283S|CDH23_uc001jsi.3_Missense_Mutation_p.P283S	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2523	Cadherin 24.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						TGAGAATGAGCCGGCGGGCAC	0.577000													5	29					0	0	0.000602214	0	0
ASCC1	51008	broad.mit.edu	37	10	73887915	73887915	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:73887915C>T	uc001jst.1	-	10	1074	c.966G>A	c.(964-966)AGG>AGA	p.R322R	ASCC1_uc001jsr.1_Silent_p.R209R|ASCC1_uc001jss.1_Silent_p.R294R|ASCC1_uc001jsu.1_Silent_p.R294R|ASCC1_uc010qju.1_Silent_p.R315R			Q8N9N2	ASCC1_HUMAN	RecName: Full=Activating signal cointegrator 1 complex subunit 1; AltName: Full=ASC-1 complex subunit p50; AltName: Full=Trip4 complex subunit p50;	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	RNA binding				0						AGAGATTGTACCTGCCTTCAG	0.363000													9	58					0	0	0.00136819	0	0
MAT1A	4143	broad.mit.edu	37	10	82036311	82036311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:82036311G>A	uc001kbw.2	-	6	844	c.589C>T	c.(589-591)CCT>TCT	p.P197S		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	197					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	ATGCGCACAGGGATGACTGCG	0.577000													9	49					0	0	0.000673444	0	0
GRID1	2894	broad.mit.edu	37	10	87614358	87614358	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:87614358G>A	uc001kdl.1	-	8	1229	c.1128C>T	c.(1126-1128)GGC>GGT	p.G376G	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	376	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCCCAGTGAGGCCAGTGATGT	0.493000										Multiple Myeloma(13;0.14)			7	34					0	0	8.12818e-05	0	0
IDE	3416	broad.mit.edu	37	10	94223509	94223510	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:94223509_94223510GG>TT	uc001kia.2	-	21	2815_2816	c.2739_2740CC>AA	c.(2737-2742)TCCCAG>TCAAAG	p.Q914K	IDE_uc010qnp.1_Missense_Mutation_p.Q359K|IDE_uc001khz.2_Missense_Mutation_p.Q359K	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	914					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTATATTGCTGGGAGATGATTT	0.381000													10	364					0	0	6.4e-05	0	0
PLCE1	51196	broad.mit.edu	37	10	96066191	96066191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:96066191C>T	uc001kjk.2	+	26	6264	c.5630C>T	c.(5629-5631)TCT>TTT	p.S1877F	PLCE1_uc010qnx.1_Missense_Mutation_p.S1861F|PLCE1_uc001kjm.2_Missense_Mutation_p.S1569F|PLCE1_uc001kjp.2_Missense_Mutation_p.S235F	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1877	C2.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				TAGATTGTCTCTGGTCAGAAT	0.522000													7	53					0	0	0.000442599	0	0
CYP2C18	1562	broad.mit.edu	37	10	96447635	96447635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:96447635G>A	uc001kjv.3	+	2	603	c.277G>A	c.(277-279)GAG>AAG	p.E93K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E93K|CYP2C19_uc009xus.1_5'Flank|CYP2C19_uc010qny.1_5'Flank	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	93					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TCATGGAGAGGAGTTTTCTGG	0.443000													7	51					0	0	0.000157383	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698494	96698494	+	Missense_Mutation	SNP	C	T	T	rs67807361		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:96698494C>T	uc001kka.3	+	1	80	c.55C>T	c.(55-57)CTC>TTC	p.L19F	CYP2C9_uc009xut.2_Missense_Mutation_p.L19F|CYP2C9_uc001kjz.2_Missense_Mutation_p.L19F	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	19			L -> I (in allele CYP2C9*7).		exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCTCCTTTCACTCTGGAGACA	0.473000													7	52					0	0	0.000274275	0	0
CYP2C9	1559	broad.mit.edu	37	10	96698519	96698519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:96698519G>A	uc001kka.3	+	1	105	c.80G>A	c.(79-81)GGA>GAA	p.G27E	CYP2C9_uc009xut.2_Missense_Mutation_p.G27E|CYP2C9_uc001kjz.2_Missense_Mutation_p.G27E	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	27					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	TCTGGGAGAGGAAAACTCCCT	0.458000													5	43					0	0	0.00116845	0	0
TLL2	7093	broad.mit.edu	37	10	98154991	98154991	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:98154991G>A	uc001kml.1	-	13	1905	c.1679C>T	c.(1678-1680)TCC>TTC	p.S560F	TLL2_uc009xvf.1_Missense_Mutation_p.S538F	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	560	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		AGAGCCATCGGACACAAACTT	0.473000													24	85					0	0	0.000720815	0	0
LOXL4	84171	broad.mit.edu	37	10	100020801	100020801	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:100020801C>T	uc001kpa.1	-	4	691	c.540G>A	c.(538-540)GAG>GAA	p.E180E		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	180	SRCR 2.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		CATACTTCACCTCCACGGCTC	0.667000													6	28					0	0	0.000157383	0	0
INA	9118	broad.mit.edu	37	10	105048203	105048203	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:105048203T>G	uc001kws.2	+	3	1326	c.1277T>G	c.(1276-1278)CTG>CGG	p.L426R		NM_032727	NP_116116	Q16352	AINX_HUMAN	internexin neuronal intermediate filament	426	Tail.				cell differentiation|nervous system development	neurofilament	structural constituent of cytoskeleton			ovary(1)|breast(1)	2				Epithelial(162;3.45e-09)|all cancers(201;9.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.198)		CCAAGTTACCTGCTCCCACCT	0.498000													15	74					0	0	0.000566183	0	0
PDCD11	22984	broad.mit.edu	37	10	105162956	105162956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:105162956C>T	uc001kwy.1	+	4	403	c.316C>T	c.(316-318)CTC>TTC	p.L106F		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	106	S1 motif 1.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		CCCCAATGGCCTCCAGGGCTT	0.468000													18	129					0	0	0.00121646	0	0
CALHM1	255022	broad.mit.edu	37	10	105215178	105215178	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:105215178C>T	uc001kxe.2	-	2	1022	c.882G>A	c.(880-882)ACG>ACA	p.T294T	CALHM2_uc001kxd.1_5'Flank	NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	294						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						TGCCTTGATCCGTGATGCCAC	0.667000													5	37					0	0	0.00116845	0	0
SORCS3	22986	broad.mit.edu	37	10	106865183	106865183	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:106865183G>A	uc001kyi.1	+	7	1349	c.1122G>A	c.(1120-1122)CAG>CAA	p.Q374Q		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	374	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GCAGGATCCAGGAATGTGCCG	0.478000													3	10					0	0	6.4e-05	0	0
TDRD1	56165	broad.mit.edu	37	10	115978251	115978251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:115978251G>A	uc001lbg.1	+	18	2555	c.2402G>A	c.(2401-2403)GGA>GAA	p.G801E	TDRD1_uc001lbf.2_Intron|TDRD1_uc001lbh.1_Missense_Mutation_p.G792E|TDRD1_uc001lbi.1_Missense_Mutation_p.G792E|TDRD1_uc010qsc.1_Missense_Mutation_p.G405E|TDRD1_uc001lbj.2_Missense_Mutation_p.G510E	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	801	Tudor 3.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GTGGATTATGGAAACATCGAA	0.383000													5	55					0	0	0.000602214	0	0
WDR11	55717	broad.mit.edu	37	10	122624714	122624714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:122624714C>T	uc010qtf.1	+	6	1107	c.869C>T	c.(868-870)CCA>CTA	p.P290L	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	290						integral to membrane					0						ACAGGAGTTCCATTTTTACAG	0.358000													7	51					0	0	8.12818e-05	0	0
DMBT1	1755	broad.mit.edu	37	10	124336133	124336133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:124336133G>A	uc001lgk.1	+	7	608	c.502G>A	c.(502-504)GAT>AAT	p.D168N	DMBT1_uc001lgl.1_Missense_Mutation_p.D168N|DMBT1_uc001lgm.1_Missense_Mutation_p.D168N|DMBT1_uc009xzz.1_Missense_Mutation_p.D168N|DMBT1_uc010qtx.1_Missense_Mutation_p.D168N|DMBT1_uc009yaa.1_Missense_Mutation_p.D20N	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	168	SRCR 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TGCCCTGGATGATGTGCGCTG	0.582000													10	60					0	0	0.000442599	0	0
DMBT1	1755	broad.mit.edu	37	10	124399773	124399773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr10:124399773C>T	uc001lgk.1	+	52	6879	c.6773C>T	c.(6772-6774)TCC>TTC	p.S2258F	DMBT1_uc001lgl.1_Missense_Mutation_p.S2248F|DMBT1_uc001lgm.1_Missense_Mutation_p.S1630F|DMBT1_uc009xzz.1_Missense_Mutation_p.S2257F|DMBT1_uc010qtx.1_Missense_Mutation_p.S978F|DMBT1_uc009yab.1_Missense_Mutation_p.S961F|DMBT1_uc009yac.1_Missense_Mutation_p.S552F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2258	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTGAACATTTCCTTTTATACT	0.463000													14	78					0	0	0.000219431	0	0
BRSK2	9024	broad.mit.edu	37	11	1459553	1459553	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:1459553G>A	uc001lti.2	+	3	590	c.204G>A	c.(202-204)GCG>GCA	p.A68A	BRSK2_uc009ycv.1_Silent_p.A68A|BRSK2_uc001lth.1_Silent_p.A68A|BRSK2_uc001ltj.2_Silent_p.A68A|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Silent_p.A68A|BRSK2_uc001ltm.2_Silent_p.A114A|BRSK2_uc001ltn.2_RNA	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	68	Protein kinase.				establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		GGGAGATCGCGATCCTGAAGC	0.557000													11	51					0	0	0.000219431	0	0
NAP1L4	4676	broad.mit.edu	37	11	2979666	2979667	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:2979666_2979667GG>TT	uc001lxc.2	-	10	995_996	c.854_855CC>AA	c.(853-855)CCC>CAA	p.P285Q	NAP1L4_uc009ydt.2_RNA|NAP1L4_uc010qxm.1_Missense_Mutation_p.P285Q|NAP1L4_uc010qxn.1_Missense_Mutation_p.P285Q	NM_005969	NP_005960	Q99733	NP1L4_HUMAN	nucleosome assembly protein 1-like 4	285					nucleosome assembly	chromatin assembly complex|cytoplasm	unfolded protein binding			ovary(1)	1		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00301)|LUSC - Lung squamous cell carcinoma(625;0.211)		AGGACTCATTGGGTACTTGTTT	0.342000													14	481					0	0	6.4e-05	0	0
OR51E1	143503	broad.mit.edu	37	11	4674660	4674660	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:4674660C>T	uc001lzi.3	+	2	1048	c.904C>T	c.(904-906)CGA>TGA	p.R302*		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	301	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R301*(1)		large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAAGGAGATTCGACAGCGCAT	0.507000													19	73					0	0	0.00152264	0	0
OR51E2	81285	broad.mit.edu	37	11	4703459	4703459	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:4703459C>T	uc001lzk.2	-	2	727	c.483G>A	c.(481-483)CTG>CTA	p.L161L		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		GCCGCTTGATCAGCAGAGGCA	0.537000													8	34					0	0	0.000274275	0	0
OR51F1	256892	broad.mit.edu	37	11	4790235	4790235	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:4790235T>A	uc010qyl.1	-	1	913	c.913A>T	c.(913-915)ATG>TTG	p.M305L		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	305						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		AGACTGAGCATAGCCTTGCGG	0.418000													8	33					0	0	0.000274275	0	0
OR51S1	119692	broad.mit.edu	37	11	4869588	4869588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:4869588G>A	uc010qyo.1	-	1	851	c.851C>T	c.(850-852)TCC>TTC	p.S284F		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGGACATAGGATAGAAGAGT	0.448000													8	39					0	0	0.000274275	0	0
OR51A4	401666	broad.mit.edu	37	11	4967848	4967848	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:4967848G>A	uc010qys.1	-	1	483	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAGTGAAAGGGAAGGGAAGAA	0.433000													19	133					0	0	0.00152264	0	0
OR52L1	338751	broad.mit.edu	37	11	6007440	6007440	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:6007440G>A	uc001mcd.2	-	1	776	c.721C>T	c.(721-723)CAG>TAG	p.Q241*		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCACTGCCTGGAGGATGTGG	0.512000													10	56					0	0	0.00136819	0	0
TRIM3	10612	broad.mit.edu	37	11	6477301	6477301	+	Splice_Site	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:6477301C>T	uc001mdh.2	-	8	1920	c.1533_splice	c.e8+1	p.Q511_splice	TRIM3_uc001mdi.2_Splice_Site_p.Q511_splice|TRIM3_uc010raj.1_Splice_Site_p.Q392_splice|TRIM3_uc009yfd.2_Splice_Site_p.Q511_splice|TRIM3_uc010rak.1_Splice_Site_p.Q511_splice	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3						nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGGTGCTTACCTGAATACAC	0.488000													6	33					0	0	8.12818e-05	0	0
DCHS1	8642	broad.mit.edu	37	11	6662608	6662608	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:6662608G>A	uc001mem.1	-	2	647	c.237C>T	c.(235-237)TTC>TTT	p.F79F		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	79	Cadherin 1.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGCAGAGATGAAGTACATGA	0.627000													6	16					0	0	8.12818e-05	0	0
OR10A4	283297	broad.mit.edu	37	11	6898777	6898777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:6898777C>T	uc010rat.1	+	1	899	c.899C>T	c.(898-900)GCT>GTT	p.A300V		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GAAGTGAAGGCTGCACTGAAG	0.468000													10	66					0	0	0.00136819	0	0
TUB	7275	broad.mit.edu	37	11	8111203	8111203	+	Missense_Mutation	SNP	C	T	T	rs139035034		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:8111203C>T	uc001mga.2	+	2	234	c.85C>T	c.(85-87)CGG>TGG	p.R29W	TUB_uc010rbk.1_Missense_Mutation_p.R35W|TUB_uc001mfy.2_Missense_Mutation_p.R84W	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	29					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		GAAGCTTGATCGGCAGGTGAG	0.592000													6	40					0	0	0.000673444	0	0
STK33	65975	broad.mit.edu	37	11	8435184	8435184	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:8435184C>T	uc001mgi.1	-	11	2121	c.1202G>A	c.(1201-1203)TGG>TAG	p.W401*	STK33_uc001mgj.1_Nonsense_Mutation_p.W401*|STK33_uc001mgk.1_Nonsense_Mutation_p.W401*|STK33_uc010rbn.1_Nonsense_Mutation_p.W360*|STK33_uc001mgl.3_Nonsense_Mutation_p.W214*	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	401						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity	p.W401*(1)		ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		GTTATTTTTCCATTCCTTCAT	0.358000													7	53					0	0	8.12818e-05	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956283	18956283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:18956283C>T	uc001mpg.2	-	1	267	c.49G>A	c.(49-51)GGA>AGA	p.G17R		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	17	Extracellular (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TCCTCAGTTCCGTTGATTGGT	0.517000													14	150					0	0	0.00074312	0	0
SLC6A5	9152	broad.mit.edu	37	11	20673884	20673885	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:20673884_20673885CT>TA	uc001mqd.2	+	15	2393_2394	c.2120_2121CT>TA	c.(2119-2121)TCT>TTA	p.S707L	SLC6A5_uc009yic.2_Missense_Mutation_p.S472L	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	707					synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	ACCTATGGCTCTTACCGCTATC	0.475000													14	69					0	0	6.4e-05	0	0
ANO5	203859	broad.mit.edu	37	11	22296268	22296268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:22296268G>A	uc001mqi.2	+	20	2706	c.2389G>A	c.(2389-2391)GAA>AAA	p.E797K	ANO5_uc001mqj.2_Missense_Mutation_p.E796K	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	797	Extracellular (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TGCACCTTCGGAAAAACGAGA	0.373000													6	43					0	0	0.00116845	0	0
SLC17A6	57084	broad.mit.edu	37	11	22363231	22363231	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:22363231T>A	uc001mqk.2	+	2	657	c.244T>A	c.(244-246)TGC>AGC	p.C82S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	82	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CCTGGGCTTCTGCATCTCCTT	0.642000													7	22					0	0	0.000157383	0	0
SLC5A12	159963	broad.mit.edu	37	11	26694959	26694959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:26694959C>T	uc001mra.2	-	14	2010	c.1697G>A	c.(1696-1698)GGG>GAG	p.G566E	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	566	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						CTGCTCTGTCCCACTGTCATG	0.413000													6	34					0	0	8.12818e-05	0	0
DCDC1	341019	broad.mit.edu	37	11	31312296	31312296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:31312296C>T	uc001msv.2	-	7	1060	c.858G>A	c.(856-858)ATG>ATA	p.M286I	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	286					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					TAAGTTTCTTCATTCTAATAG	0.383000													11	37					0	0	0.00136819	0	0
NAT10	55226	broad.mit.edu	37	11	34129802	34129802	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:34129802C>T	uc001mvk.2	+	2	274	c.30C>T	c.(28-30)ATC>ATT	p.I10I	NAT10_uc010ren.1_Intron	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	10						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				ATAACCGAATCCGGATTCTCA	0.418000													16	124					0	0	0.000958276	0	0
ALX4	60529	broad.mit.edu	37	11	44286723	44286723	+	Missense_Mutation	SNP	G	A	A	rs149897209	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:44286723G>A	uc001myb.2	-	4	1021	c.917C>T	c.(916-918)CCG>CTG	p.P306L		NM_021926	NP_068745	Q9H161	ALX4_HUMAN	aristaless-like homeobox 4	306					hair follicle development						0						GAGCCAGGACGGGTTCTGAAT	0.682000													4	11					0	0	0.000602214	0	0
CHRM4	1132	broad.mit.edu	37	11	46406977	46406977	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:46406977G>A	uc001nct.1	-	1	1131	c.1131C>T	c.(1129-1131)TTC>TTT	p.F377F		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	377	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	CGATGCTGGCGAACTTGCGGG	0.612000													13	79					0	0	0.00136819	0	0
CKAP5	9793	broad.mit.edu	37	11	46800125	46800125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:46800125G>A	uc001ndi.1	-	21	2568	c.2458C>T	c.(2458-2460)CCA>TCA	p.P820S	CKAP5_uc009ylg.1_Missense_Mutation_p.P706S|CKAP5_uc001ndj.1_Missense_Mutation_p.P820S	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	820					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						CCTCTGGTTGGAGCAGGTGGA	0.428000													15	47					0	0	0.00074312	0	0
AGBL2	79841	broad.mit.edu	37	11	47698906	47698906	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:47698906G>A	uc001ngg.2	-	13	2164	c.2064C>T	c.(2062-2064)ATC>ATT	p.I688I	AGBL2_uc001ngf.2_RNA|AGBL2_uc010rhq.1_Silent_p.I650I|AGBL2_uc001ngh.1_Intron	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	688					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						ATTTCTTGTGGATTTCCTGTC	0.323000													5	34					0	0	0.00116845	0	0
OR4A47	403253	broad.mit.edu	37	11	48510633	48510633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:48510633G>A	uc010rhx.1	+	1	289	c.289G>A	c.(289-291)GCC>ACC	p.A97T		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATCTTGCATGGCCCAGCTCTT	0.423000													4	42					0	0	0.00116845	0	0
TRIM48	79097	broad.mit.edu	37	11	55032413	55032413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:55032413G>A	uc010rid.1	+	2	168	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	12						intracellular	zinc ion binding				0						CTTCCAGAGGGAACTCACCTG	0.483000													9	49					0	0	0.000274275	0	0
OR5D13	390142	broad.mit.edu	37	11	55541205	55541205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:55541205G>A	uc010ril.1	+	1	292	c.292G>A	c.(292-294)GGT>AGT	p.G98S		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				CTCTTTCTCTGGTTGCATCAT	0.408000													10	52					0	0	0.000151284	0	0
OR5J2	282775	broad.mit.edu	37	11	55944456	55944456	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:55944456C>T	uc010rjb.1	+	1	363	c.363C>T	c.(361-363)GAC>GAT	p.D121D		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					TGGCCTATGACCGCTATGTGG	0.453000													13	59					0	0	0.000151284	0	0
OR8J1	219477	broad.mit.edu	37	11	56128424	56128424	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:56128424G>A	uc010rjh.1	+	1	702	c.702G>A	c.(700-702)AGG>AGA	p.R234R		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					CAGAAGGAAGGAAAAAAGCCT	0.348000													7	29					0	0	8.12818e-05	0	0
OR5M1	390168	broad.mit.edu	37	11	56380970	56380970	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:56380970G>A	uc001nja.1	-	1	9	c.9C>T	c.(7-9)TCC>TCT	p.S3S		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TGTGGTTTGGGGAGAACATCT	0.413000													5	28					0	0	0.000602214	0	0
SERPING1	710	broad.mit.edu	37	11	57379302	57379302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:57379302C>T	uc001nkp.1	+	7	1333	c.1142C>T	c.(1141-1143)GCC>GTC	p.A381V	SERPING1_uc001nkq.1_Missense_Mutation_p.A344V|SERPING1_uc010rju.1_Missense_Mutation_p.A329V|SERPING1_uc010rjv.1_Missense_Mutation_p.A386V|SERPING1_uc001nkr.1_Missense_Mutation_p.A381V|SERPING1_uc009ymi.1_Missense_Mutation_p.A390V|SERPING1_uc009ymj.1_Intron|SERPING1_uc001nks.1_Missense_Mutation_p.A72V	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	381					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						GTTTTCAAGGCCATCATGGAG	0.507000									Hereditary_Angioedema				20	52					0	0	0.00121646	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958248	57958248	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:57958248C>T	uc010rka.1	+	1	286	c.286C>T	c.(286-288)CGC>TGC	p.R96C		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				CTCCCAGGCTCGCTGTGCAGC	0.592000													12	64					0	0	0.000219431	0	0
OR5B12	390191	broad.mit.edu	37	11	58207292	58207292	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:58207292G>A	uc010rkh.1	-	1	333	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ATGCCAGGAGGAAACTTTCTG	0.443000													5	44					0	0	0.000602214	0	0
OR5B12	390191	broad.mit.edu	37	11	58207622	58207622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:58207622C>T	uc010rkh.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGTTGTTCTCCATTGGGAATT	0.428000													11	32					0	0	0.000673444	0	0
GLYATL2	219970	broad.mit.edu	37	11	58601914	58601914	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:58601914C>T	uc001nnd.3	-	6	1004	c.873G>A	c.(871-873)AAG>AAA	p.K291K	GLYATL2_uc009ymq.2_Silent_p.K291K	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	291						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AACAATATTTCTTGGGGGTGC	0.363000													7	28					0	0	8.12818e-05	0	0
GLYATL2	219970	broad.mit.edu	37	11	58602030	58602030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:58602030C>T	uc001nnd.3	-	6	888	c.757G>A	c.(757-759)GAA>AAA	p.E253K	GLYATL2_uc009ymq.2_Missense_Mutation_p.E253K	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	253						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AATGGGATTTCTTTCTGAGAA	0.398000													7	53					0	0	0.000274275	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996992	62996992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:62996992G>A	uc001nwr.1	-	1	133	c.133C>T	c.(133-135)CTT>TTT	p.L45F	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.L45F	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	45	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CGATGATCAAGTATGAATGCT	0.483000													6	47					0	0	8.12818e-05	0	0
FLRT1	23769	broad.mit.edu	37	11	63884172	63884172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:63884172G>A	uc001nyi.1	+	2	774	c.433G>A	c.(433-435)GAC>AAC	p.D145N	MACROD1_uc001nyh.2_Intron	NM_013280	NP_037412	Q9NZU1	FLRT1_HUMAN	fibronectin leucine rich transmembrane protein	117	LRR 3.|Extracellular (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity				0						CATTGCCAGGGACTCGCTGGC	0.607000													5	29					0	0	0.00116845	0	0
POLA2	23649	broad.mit.edu	37	11	65046388	65046388	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:65046388C>T	uc001odj.2	+	6	991	c.649C>T	c.(649-651)CGA>TGA	p.R217*	POLA2_uc009yqf.1_Nonsense_Mutation_p.R217*|POLA2_uc010rod.1_Nonsense_Mutation_p.R9*|POLA2_uc001odk.2_5'Flank	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	217					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	CCCAGACATTCGAGAAGGTGA	0.463000													8	53					0	0	0.000157383	0	0
MALAT1	378938	broad.mit.edu	37	11	65268186	65268186	+	RNA	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:65268186C>T	uc010roh.1	+	1		c.2954C>T			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GTAGAGGATCCTAGACCAGCA	0.532000													12	46					0	0	0.000978159	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793416	65793416	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:65793416C>T	uc001ogt.2	-	1	573	c.435G>A	c.(433-435)AGG>AGA	p.R145R		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	145	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						GGTGAGACCCCCTATGGTAAT	0.557000													7	35					0	0	8.12818e-05	0	0
CD248	57124	broad.mit.edu	37	11	66083678	66083679	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:66083678_66083679GG>AA	uc001ohm.1	-	1	837_838	c.820_821CC>TT	c.(820-822)CCC>TTC	p.P274F		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	274	Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	CTGGGCACAGGGGTCCTCGCAA	0.673000													6	20					0	0	6.4e-05	0	0
ALDH3B1	221	broad.mit.edu	37	11	67789249	67789249	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:67789249C>T	uc010rpy.1	+	8	974	c.858C>T	c.(856-858)ATC>ATT	p.I286I	ALDH3B1_uc001omz.2_Silent_p.I286I|ALDH3B1_uc001ona.2_Silent_p.I249I|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	286					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	GCCGCATCATCAACCAGAAAC	0.637000											OREG0021141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	77					0	0	0.000295444	0	0
LRP5	4041	broad.mit.edu	37	11	68216286	68216286	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:68216286C>T	uc001ont.2	+	23	4671	c.4596C>T	c.(4594-4596)ATC>ATT	p.I1532I	LRP5_uc009ysg.2_Silent_p.I942I	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1532	Pro-rich.|Cytoplasmic (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GGCCCTACATCATTCGAGGAA	0.632000													6	31					0	0	0.000157383	0	0
LRP5	4041	broad.mit.edu	37	11	68216416	68216416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:68216416C>T	uc001ont.2	+	23	4801	c.4726C>T	c.(4726-4728)CCA>TCA	p.P1576S	LRP5_uc009ysg.2_Missense_Mutation_p.P986S	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1576	PPPSP motif C.|Cytoplasmic (Potential).|Pro-rich.				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CTATCCACCCCCACCCACGCC	0.657000													8	21					0	0	0.000673444	0	0
P2RY6	5031	broad.mit.edu	37	11	73007862	73007862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:73007862G>A	uc001otm.2	+	4	704	c.299G>A	c.(298-300)CGC>CAC	p.R100H	P2RY6_uc001otn.2_Missense_Mutation_p.R100H|P2RY6_uc001oto.2_Missense_Mutation_p.R100H|P2RY6_uc001otp.2_Missense_Mutation_p.R100H|P2RY6_uc001otq.2_Missense_Mutation_p.R100H|P2RY6_uc001otr.2_Missense_Mutation_p.R100H|P2RY6_uc001ots.2_Missense_Mutation_p.R100H	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	100	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						TTCGCCTGCCGCCTGGTCCGC	0.607000													13	67					0	0	0.00136819	0	0
P4HA3	283208	broad.mit.edu	37	11	74013503	74013503	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:74013503G>A	uc001ouz.2	-	3	521	c.478C>T	c.(478-480)CAG>TAG	p.Q160*	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Nonsense_Mutation_p.Q160*	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	160						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					GTGACTCTCTGAAAGACACCT	0.547000													19	74					0	0	0.00152264	0	0
NEU3	10825	broad.mit.edu	37	11	74716820	74716820	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:74716820C>T	uc001ovw.2	+	3	825	c.669C>T	c.(667-669)TTC>TTT	p.F223F	NEU3_uc001ovv.2_Silent_p.F213F|NEU3_uc010rrl.1_Silent_p.F114F	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	223										ovary(2)	2						TCTTTTGCTTCCAGCTACCAT	0.517000													11	54					0	0	0.000673444	0	0
LRRC32	2615	broad.mit.edu	37	11	76372307	76372307	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:76372307C>T	uc001oxq.3	-	3	573	c.330G>A	c.(328-330)GCG>GCA	p.A110A	LRRC32_uc001oxr.3_Silent_p.A110A|LRRC32_uc010rsf.1_Silent_p.A110A	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	110	LRR 3.|Extracellular (Potential).					integral to plasma membrane					0						CAGTGGCCATCGCCAGCCGGT	0.672000													8	34					0	0	0.000157383	0	0
MYO7A	4647	broad.mit.edu	37	11	76868390	76868390	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:76868390G>A	uc001oyb.2	+	8	1073	c.801G>A	c.(799-801)AAG>AAA	p.K267K	MYO7A_uc010rsl.1_Silent_p.K267K|MYO7A_uc010rsm.1_Silent_p.K256K|MYO7A_uc001oyc.2_Silent_p.K267K	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	267	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AGGATCAGAAGAAGAAGCTGG	0.592000													5	9					0	0	8.12818e-05	0	0
CCDC81	60494	broad.mit.edu	37	11	86120405	86120405	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:86120405T>C	uc001pbx.1	+	10	1644	c.1216T>C	c.(1216-1218)TAT>CAT	p.Y406H	CCDC81_uc001pbw.1_Missense_Mutation_p.Y316H|CCDC81_uc010rtq.1_Missense_Mutation_p.Y189H|CCDC81_uc001pby.1_Missense_Mutation_p.Y141H	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1	406										skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				ACCGGAATTTTATGTAAGTCT	0.383000													8	41					0	0	0.000157383	0	0
FOLH1B	219595	broad.mit.edu	37	11	89402614	89402614	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:89402614G>T	uc001pda.2	+	3	564	c.38G>T	c.(37-39)GGA>GTA	p.G13V		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	13					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGCTGGAGAGGAAGTCTCAAA	0.383000													10	68					1.08611e-07	6.43437e-07	0.000978159	1	0
Unknown	0	broad.mit.edu	37	11	89774485	89774485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:89774485G>A	uc010rua.1	+	7	1249	c.1126G>A	c.(1126-1128)GGA>AGA	p.G376R		NM_020358	NP_065091			ring finger protein 18																		TGGAAAGGAGGGACTCTTTCT	0.448000													6	40					0	0	8.12818e-05	0	0
NAALAD2	10003	broad.mit.edu	37	11	89896572	89896572	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:89896572G>A	uc001pdf.3	+	10	1279	c.1170G>A	c.(1168-1170)CGG>CGA	p.R390R	NAALAD2_uc009yvx.2_Silent_p.R357R|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pde.2_Silent_p.R297R	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	390	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				AAATTGCCCGGAGTTTTGGAA	0.413000													19	95					0	0	0.000295444	0	0
CHORDC1	26973	broad.mit.edu	37	11	89936519	89936519	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:89936519T>C	uc001pdg.2	-	9	1156	c.746A>G	c.(745-747)AAC>AGC	p.N249S	CHORDC1_uc009yvz.2_Missense_Mutation_p.N230S	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	249	Interaction with HSP90AA1 and HSP90AB1 (By similarity).|CS.				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				TGGAAGTGAGTTTTTAGCATA	0.353000													16	52					0	0	0.00074312	0	0
SLC36A4	120103	broad.mit.edu	37	11	92918935	92918936	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:92918935_92918936CC>AA	uc001pdn.2	-	2	197_198	c.100_101GG>TT	c.(100-102)GGG>TTG	p.G34L	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	34					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATCTGATGTCCCATCAAAATTC	0.351000													12	473					0	0	6.4e-05	0	0
BIRC3	330	broad.mit.edu	37	11	102195745	102195745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:102195745G>A	uc001pgx.2	+	3	727	c.505G>A	c.(505-507)GAA>AAA	p.E169K		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	169	BIR 2.				anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		AATGAATAACGAAAATGCCAG	0.413000			T	MALT1	MALT								12	86					0	0	0.00136819	0	0
MMP1	4312	broad.mit.edu	37	11	102662100	102662100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:102662100C>T	uc001phi.2	-	8	1303	c.1160G>A	c.(1159-1161)GGA>GAA	p.G387E	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.G321E	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	387	Hemopexin-like 3.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		GTAGGTTTTTCCAGTGTTTTC	0.418000													11	60					0	0	0.000151284	0	0
DRD2	1813	broad.mit.edu	37	11	113286168	113286168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:113286168C>T	uc001pnz.2	-	4	1019	c.698G>A	c.(697-699)AGG>AAG	p.R233K	DRD2_uc010rwv.1_Missense_Mutation_p.R232K|DRD2_uc001poa.3_Missense_Mutation_p.R233K|DRD2_uc001pob.3_Missense_Mutation_p.R233K|DRD2_uc009yyr.1_Missense_Mutation_p.R233K	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	233	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	CAGGTGGGCCCTGAAAGCTCG	0.562000													8	58					0	0	0.000673444	0	0
USP28	57646	broad.mit.edu	37	11	113672311	113672311	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:113672311G>A	uc001poh.2	-	24	2985	c.2952C>T	c.(2950-2952)ATC>ATT	p.I984I	USP28_uc001pog.2_Silent_p.I660I|USP28_uc010rwy.1_Silent_p.I827I|USP28_uc001poi.2_Silent_p.I307I	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	984					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		GAATGCAGGGGATGATCAGTT	0.403000													12	32					0	0	0.00136819	0	0
AMICA1	120425	broad.mit.edu	37	11	118085557	118085557	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:118085557G>A	uc001psk.2	-	2	199	c.25C>T	c.(25-27)CTG>TTG	p.L9L	AMICA1_uc001psh.2_5'Flank|AMICA1_uc009yzw.1_5'Flank|AMICA1_uc001psi.2_5'Flank|AMICA1_uc001psj.2_Silent_p.L9L|AMICA1_uc010rxw.1_Intron|AMICA1_uc010rxx.1_Silent_p.L9L|AMICA1_uc001psl.1_5'Flank	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	9					blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		ACTGGCAGCAGGATGAGTTTC	0.358000													12	67					0	0	0.000219431	0	0
BCL9L	283149	broad.mit.edu	37	11	118769574	118769574	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:118769574G>A	uc001pug.2	-	8	5015	c.4050C>T	c.(4048-4050)CCC>CCT	p.P1350P	BCL9L_uc009zal.2_Silent_p.P1345P	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1350	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		GCTGAGCCTTGGGGGGCTGGT	0.622000													11	46					0	0	0.000978159	0	0
DPAGT1	1798	broad.mit.edu	37	11	118969132	118969132	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:118969132C>A	uc001pvi.2	-	5	1129	c.709G>T	c.(709-711)GGA>TGA	p.G237*	H2AFX_uc001pvg.2_5'Flank|H2AFX_uc001pvh.1_5'Flank|DPAGT1_uc001pvj.2_Nonsense_Mutation_p.G130*|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Nonsense_Mutation_p.G65*|DPAGT1_uc010ryz.1_Nonsense_Mutation_p.G237*|DPAGT1_uc001pvm.1_Nonsense_Mutation_p.G130*|DPAGT1_uc010rza.1_Nonsense_Mutation_p.G130*	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	237	Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		TAGAGCAATCCCAAAGTGGTG	0.438000													8	98					0.000442599	0.00258052	0.000442599	1	0
TECTA	7007	broad.mit.edu	37	11	120980003	120980003	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:120980003C>T	uc010rzo.1	+	3	282	c.282C>T	c.(280-282)GCC>GCT	p.A94A		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	94					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ATGGGAGAGCCTTCGTCGCCC	0.493000													5	26					0	0	0.00116845	0	0
TECTA	7007	broad.mit.edu	37	11	120996548	120996548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:120996548C>T	uc010rzo.1	+	7	1741	c.1741C>T	c.(1741-1743)CCA>TCA	p.P581S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	581					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CCTTGGCATTCCAATTGGAGA	0.592000													5	22					0	0	0.000602214	0	0
SORL1	6653	broad.mit.edu	37	11	121492969	121492969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:121492969G>A	uc001pxx.2	+	45	6243	c.6163G>A	c.(6163-6165)GAA>AAA	p.E2055K	SORL1_uc010rzp.1_Missense_Mutation_p.E901K|SORL1_uc010rzq.1_Missense_Mutation_p.E670K	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	2055	Extracellular (Potential).|Fibronectin type-III 6.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCATTTTAATGAAAGCAGGGT	0.363000													10	33					0	0	0.000673444	0	0
HSPA8	3312	broad.mit.edu	37	11	122929032	122929032	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:122929032C>T	uc001pyo.2	-	8	1761	c.1683G>A	c.(1681-1683)AAG>AAA	p.K561K	HSPA8_uc009zbc.2_Silent_p.K325K|HSPA8_uc001pyp.2_Intron|HSPA8_uc010rzu.1_Silent_p.K484K	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	561					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CATCGTTAATCTTGCCTTGAA	0.363000													9	102					0	0	0.000442599	0	0
OR8B8	26493	broad.mit.edu	37	11	124310158	124310158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:124310158G>A	uc010sal.1	-	1	824	c.824C>T	c.(823-825)TCC>TTC	p.S275F		NM_012378	NP_036510	Q15620	OR8B8_HUMAN	olfactory receptor, family 8, subfamily B,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATAGAATAGGGAAGACACCTT	0.413000													9	33					0	0	0.000274275	0	0
PRDM10	56980	broad.mit.edu	37	11	129795050	129795050	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr11:129795050G>A	uc001qfm.2	-	13	1849	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F	PRDM10_uc001qfj.2_Silent_p.F453F|PRDM10_uc001qfk.2_Silent_p.F449F|PRDM10_uc001qfl.2_Silent_p.F453F|PRDM10_uc010sbx.1_Silent_p.F449F|PRDM10_uc001qfn.2_Silent_p.F535F	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	539	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		CCTTTTCCCGGAAGGCCTTCC	0.502000													21	76					0	0	0.000229342	0	0
CCDC77	84318	broad.mit.edu	37	12	542444	542444	+	Silent	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:542444T>C	uc001qig.2	+	9	957	c.777T>C	c.(775-777)GTT>GTC	p.V259V	CCDC77_uc009zdk.2_Silent_p.V227V|CCDC77_uc010sdp.1_Silent_p.V227V|CCDC77_uc010sdq.1_Silent_p.V227V	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	259	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			AAATACAAGTTCAGCACCAGA	0.428000													4	64					0	0	0.00024832	0	0
CACNA1C	775	broad.mit.edu	37	12	2693694	2693694	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:2693694C>T	uc009zdu.1	+	16	2563	c.2250C>T	c.(2248-2250)GCC>GCT	p.A750A	CACNA1C_uc009zdv.1_Silent_p.A747A|CACNA1C_uc001qkb.2_Silent_p.A750A|CACNA1C_uc001qkc.2_Silent_p.A750A|CACNA1C_uc001qke.2_Silent_p.A750A|CACNA1C_uc001qkf.2_Silent_p.A750A|CACNA1C_uc001qjz.2_Silent_p.A750A|CACNA1C_uc001qkd.2_Silent_p.A750A|CACNA1C_uc001qkg.2_Silent_p.A750A|CACNA1C_uc009zdw.1_Silent_p.A750A|CACNA1C_uc001qkh.2_Silent_p.A750A|CACNA1C_uc001qkl.2_Silent_p.A750A|CACNA1C_uc001qkn.2_Silent_p.A750A|CACNA1C_uc001qko.2_Silent_p.A750A|CACNA1C_uc001qkp.2_Silent_p.A750A|CACNA1C_uc001qkr.2_Silent_p.A750A|CACNA1C_uc001qku.2_Silent_p.A750A|CACNA1C_uc001qkq.2_Silent_p.A750A|CACNA1C_uc001qks.2_Silent_p.A750A|CACNA1C_uc001qkt.2_Silent_p.A750A|CACNA1C_uc001qka.1_Silent_p.A285A|CACNA1C_uc001qki.1_Silent_p.A486A|CACNA1C_uc001qkj.1_Silent_p.A486A|CACNA1C_uc001qkk.1_Silent_p.A486A|CACNA1C_uc001qkm.1_Silent_p.A486A|CACNA1C_uc001qkw.2_Silent_p.A39A	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	750	Helical; Name=S6 of repeat II; (Potential).|II.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TGTTCTTGGCCATTGCTGTGG	0.433000													6	28					0	0	0.00116845	0	0
CACNA1C	775	broad.mit.edu	37	12	2778159	2778159	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:2778159C>T	uc009zdu.1	+	40	5141	c.4828C>T	c.(4828-4830)CTG>TTG	p.L1610L	CACNA1C_uc009zdv.1_Silent_p.L1559L|CACNA1C_uc001qkb.2_Silent_p.L1562L|CACNA1C_uc001qkc.2_Silent_p.L1562L|CACNA1C_uc001qke.2_Silent_p.L1551L|CACNA1C_uc001qkf.2_Silent_p.L1551L|CACNA1C_uc001qjz.2_Silent_p.L1562L|CACNA1C_uc001qkd.2_Silent_p.L1562L|CACNA1C_uc001qkg.2_Silent_p.L1549L|CACNA1C_uc009zdw.1_Silent_p.L1584L|CACNA1C_uc001qkh.2_Silent_p.L1551L|CACNA1C_uc001qkl.2_Silent_p.L1610L|CACNA1C_uc001qkn.2_Silent_p.L1562L|CACNA1C_uc001qko.2_Silent_p.L1582L|CACNA1C_uc001qkp.2_Silent_p.L1562L|CACNA1C_uc001qkr.2_Silent_p.L1579L|CACNA1C_uc001qku.2_Silent_p.L1562L|CACNA1C_uc001qkq.2_Silent_p.L1590L|CACNA1C_uc001qks.2_Silent_p.L1562L|CACNA1C_uc001qkt.2_Silent_p.L1562L|CACNA1C_uc001qki.1_Silent_p.L1298L|CACNA1C_uc001qkj.1_Silent_p.L1298L|CACNA1C_uc001qkk.1_Silent_p.L1298L|CACNA1C_uc001qkm.1_Silent_p.L1287L|CACNA1C_uc010sea.1_Silent_p.L253L	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1610	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CAATGCCACCCTGTTTGCCCT	0.567000													4	72					0	0	8.12818e-05	0	0
LEPREL2	10536	broad.mit.edu	37	12	6943129	6943129	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:6943129C>T	uc001qra.1	+	11	1408	c.1374C>T	c.(1372-1374)TCC>TCT	p.S458S	LEPREL2_uc001qqz.1_Silent_p.S265S|LEPREL2_uc001qrb.1_Silent_p.S265S	NM_014262	NP_055077	Q8IVL6	P3H3_HUMAN	leprecan-like 2 precursor	458					negative regulation of cell proliferation	endoplasmic reticulum	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity				0					L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CCCAGGATTCCAGGCAGCTGA	0.617000													18	45					0	0	0.000295444	0	0
CD163L1	283316	broad.mit.edu	37	12	7550882	7550882	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:7550882C>T	uc001qsy.2	-	7	1733	c.1707G>A	c.(1705-1707)GAG>GAA	p.E569E	CD163L1_uc010sge.1_Silent_p.E579E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	569	SRCR 5.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CAATCACATCCTCTCTGTGTA	0.353000													8	41					0	0	0.000157383	0	0
CD163	9332	broad.mit.edu	37	12	7651781	7651781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:7651781C>T	uc001qsz.3	-	4	589	c.461G>A	c.(460-462)GGA>GAA	p.G154E	CD163_uc001qta.3_Missense_Mutation_p.G154E|CD163_uc009zfw.2_Missense_Mutation_p.G154E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	154	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CAAATTGGATCCATCTGGAGC	0.413000													8	81					0	0	0.000274275	0	0
GDF3	9573	broad.mit.edu	37	12	7842822	7842822	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:7842822C>T	uc001qte.2	-	2	783	c.747G>A	c.(745-747)AGG>AGA	p.R249R		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	249					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						TGGCTGCTCTCCTTTTCCGAG	0.537000													8	47					0	0	0.000442599	0	0
GPRC5D	55507	broad.mit.edu	37	12	13102984	13102984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:13102984G>A	uc010shp.1	-	1	335	c.335C>T	c.(334-336)TCC>TTC	p.S112F		NM_018654	NP_061124	Q9NZD1	GPC5D_HUMAN	G protein-coupled receptor, family C, group 5,	112	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		CACTAGATTGGAGGCATGAGC	0.478000													9	38					0	0	0.000442599	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21015471	21015471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:21015471G>A	uc001rek.2	+	6	733	c.607G>A	c.(607-609)GGA>AGA	p.G203R	SLCO1B3_uc001rel.2_Missense_Mutation_p.G203R|SLCO1B3_uc010sil.1_Missense_Mutation_p.G203R|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G28R	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	203	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TGCAAAAGAAGGACATTCTTC	0.353000													11	41					0	0	0.000978159	0	0
GOLT1B	51026	broad.mit.edu	37	12	21661379	21661379	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:21661379C>T	uc001rez.2	+	3	339	c.180C>T	c.(178-180)TTC>TTT	p.F60F	GOLT1B_uc009zis.2_RNA|GOLT1B_uc009zit.2_RNA|GOLT1B_uc009ziu.2_Intron	NM_016072	NP_057156	Q9Y3E0	GOT1B_HUMAN	golgi transport 1 homolog B	60	Phe-rich.|Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport|vesicle-mediated transport	endoplasmic reticulum|Golgi membrane|integral to membrane	signal transducer activity				0						GATTCTTCTTCCAAAAACATA	0.338000													10	47					0	0	0.000442599	0	0
SOX5	6660	broad.mit.edu	37	12	23699249	23699250	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:23699249_23699250CC>TT	uc001rfw.2	-	12	1699	c.1597_splice	c.e12+1	p.G533_splice	SOX5_uc001rfx.2_Splice_Site_p.G520_splice|SOX5_uc001rfy.2_Splice_Site_p.G412_splice|SOX5_uc001rfv.2_Splice_Site_p.G147_splice|SOX5_uc010siv.1_Splice_Site_p.G520_splice|SOX5_uc010siw.1_Intron|SOX5_uc001rfz.1_Splice_Site_p.G485_splice	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a						transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						TTTTCACAAACCATCAGAATCT	0.371000													6	56					0	0	6.4e-05	0	0
PPFIBP1	8496	broad.mit.edu	37	12	27820138	27820138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:27820138C>T	uc001ric.1	+	13	1459	c.1082C>T	c.(1081-1083)TCC>TTC	p.S361F	PPFIBP1_uc010sjr.1_Missense_Mutation_p.S192F|PPFIBP1_uc001rib.1_Missense_Mutation_p.S344F|PPFIBP1_uc001ria.2_Missense_Mutation_p.S330F|PPFIBP1_uc001rid.1_Missense_Mutation_p.S208F	NM_003622	NP_003613	Q86W92	LIPB1_HUMAN	PTPRF interacting protein binding protein 1	361	Potential.				cell adhesion	plasma membrane	protein binding		PPFIBP1/ALK(3)	soft_tissue(3)|kidney(1)|skin(1)	5	Lung SC(9;0.0873)					AATTCCAGTTCCATCTCCTCT	0.413000													6	29					0	0	0.00116845	0	0
PTHLH	5744	broad.mit.edu	37	12	28116391	28116391	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:28116391C>T	uc001rik.2	-	3	717	c.414G>A	c.(412-414)AAG>AAA	p.K138K	PTHLH_uc001ril.2_Silent_p.K138K|PTHLH_uc001rim.2_Silent_p.K138K|PTHLH_uc001rin.2_Silent_p.K138K	NM_198966	NP_945317	P12272	PTHR_HUMAN	parathyroid hormone-like hormone isoform 1	138					activation of adenylate cyclase activity by G-protein signaling pathway|cAMP metabolic process|cell-cell signaling|epidermis development|female pregnancy|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation	cytoplasm|extracellular space|nucleus	hormone activity|peptide hormone receptor binding			breast(1)	1	Lung SC(9;0.184)					GCCGTTTTTTCTTTTCCTGCT	0.547000													7	46					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	12	31300958	31300958	+	Silent	SNP	C	T	T	rs145176193	by1000genomes	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:31300958C>T	uc010sjy.1	-	11	1302	c.1302G>A	c.(1300-1302)ACG>ACA	p.T434T						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		GGAAGCTGTTCGTTCGGGAGT	0.463000													15	207					0	0	0.00074312	0	0
PPHLN1	51535	broad.mit.edu	37	12	42729760	42729760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:42729760C>T	uc001rng.1	+	2	161	c.56C>T	c.(55-57)CCT>CTT	p.P19L	PPHLN1_uc001rmy.2_Missense_Mutation_p.P37L|PPHLN1_uc001rna.2_Missense_Mutation_p.P26L|PPHLN1_uc001rne.2_Missense_Mutation_p.P26L|PPHLN1_uc001rnb.2_Missense_Mutation_p.P26L|PPHLN1_uc001rnd.2_Missense_Mutation_p.P26L|PPHLN1_uc001rnc.2_Missense_Mutation_p.P19L|PPHLN1_uc001rnf.2_Missense_Mutation_p.P19L|PPHLN1_uc010skq.1_Missense_Mutation_p.P19L|PPHLN1_uc010skr.1_Missense_Mutation_p.P19L|PPHLN1_uc010sks.1_Missense_Mutation_p.P19L|PPHLN1_uc010skt.1_Intron|PPHLN1_uc001rni.1_Missense_Mutation_p.P19L|PPHLN1_uc001rnh.1_RNA|PPHLN1_uc010sku.1_Missense_Mutation_p.P26L	NM_016488	NP_057572	Q8NEY8	PPHLN_HUMAN	periphilin 1 isoform 1	19					keratinization	cytoplasm|nucleus				ovary(1)|breast(1)	2	all_cancers(12;0.00049)|Breast(8;0.165)	Lung NSC(34;0.123)		GBM - Glioblastoma multiforme(48;0.0875)		CGAGCACCTCCTCGAAGTCAT	0.373000													22	93					0	0	0.000295444	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826561	43826561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:43826561C>T	uc010skx.1	-	20	2774	c.2774G>A	c.(2773-2775)AGA>AAA	p.R925K	ADAMTS20_uc001rno.1_Missense_Mutation_p.R79K|ADAMTS20_uc001rnp.1_Missense_Mutation_p.R79K	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	925	TSP type-1 3.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTCCAAGGTTCTATATCCTTG	0.383000													16	108					0	0	0.000958276	0	0
IRAK4	51135	broad.mit.edu	37	12	44165028	44165028	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:44165028T>A	uc001rnu.3	+	4	297	c.167T>A	c.(166-168)TTT>TAT	p.F56Y	IRAK4_uc001rnt.3_Missense_Mutation_p.F56Y|IRAK4_uc001rnx.3_Intron|IRAK4_uc001rny.3_Intron|IRAK4_uc010sky.1_Intron|IRAK4_uc001rnv.3_Translation_Start_Site|IRAK4_uc001rnw.3_Translation_Start_Site	NM_001114182	NP_001107654	Q9NWZ3	IRAK4_HUMAN	interleukin-1 receptor-associated kinase 4	56	Death.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0	all_cancers(12;0.00149)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.04)		TTAAGGAGATTTGAAGCATTA	0.254000													5	30					0	0	0.000602214	0	0
MLL2	8085	broad.mit.edu	37	12	49445207	49445207	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:49445207G>A	uc001rta.3	-	10	2259	c.2259C>T	c.(2257-2259)TCC>TCT	p.S753S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	753	Pro-rich.			Missing (in Ref. 1; AAC51734).	chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGGCCGGGGGGACAGGTGCG	0.692000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			4	33					0	0	0.000602214	0	0
TROAP	10024	broad.mit.edu	37	12	49721110	49721110	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:49721110C>T	uc001rtx.3	+	8	1055	c.888C>T	c.(886-888)ACC>ACT	p.T296T	TROAP_uc009zlh.2_Silent_p.T296T|TROAP_uc001rty.2_Silent_p.T4T	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	296					cell adhesion	cytoplasm				ovary(1)	1						TGTCACATACCAGGGTGAGAT	0.527000													7	62					0	0	0.000274275	0	0
SLC4A8	9498	broad.mit.edu	37	12	51856188	51856188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:51856188G>A	uc001rys.1	+	10	1374	c.1196G>A	c.(1195-1197)GGA>GAA	p.G399E	SLC4A8_uc010sni.1_Missense_Mutation_p.G346E|SLC4A8_uc001rym.2_Missense_Mutation_p.G346E|SLC4A8_uc001ryn.2_Missense_Mutation_p.G346E|SLC4A8_uc001ryo.2_Missense_Mutation_p.G346E|SLC4A8_uc001ryp.1_3'UTR|SLC4A8_uc010snj.1_Missense_Mutation_p.G426E|SLC4A8_uc001ryq.3_Missense_Mutation_p.G399E|SLC4A8_uc001ryr.2_Missense_Mutation_p.G399E|SLC4A8_uc010snk.1_Missense_Mutation_p.G346E	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	399	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		CTCCCTCCAGGAGAGTGGGAT	0.488000													5	25					0	0	0.000602214	0	0
SCN8A	6334	broad.mit.edu	37	12	52159652	52159652	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:52159652C>T	uc001ryw.2	+	16	2920	c.2742C>T	c.(2740-2742)CTC>CTT	p.L914L	SCN8A_uc010snl.1_Silent_p.L779L|SCN8A_uc001ryy.2_Silent_p.L779L	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	914	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	ACTGTGAACTCCCTCGCTGGC	0.488000													20	72					0	0	0.00121646	0	0
KRT77	374454	broad.mit.edu	37	12	53096842	53096842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:53096842C>T	uc001saw.2	-	1	406	c.377G>A	c.(376-378)GGC>GAC	p.G126D	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	126	Head.					keratin filament	structural molecule activity			ovary(1)	1						AGGACCAAAGCCCCCAAGCCC	0.582000													5	17					0	0	0.000602214	0	0
TARBP2	6895	broad.mit.edu	37	12	53898929	53898929	+	Silent	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:53898929T>G	uc001sdo.2	+	7	1112	c.624T>G	c.(622-624)ACT>ACG	p.T208T	TARBP2_uc001sdp.2_Silent_p.T187T|TARBP2_uc001sdq.2_Silent_p.T64T|TARBP2_uc001sdr.2_Silent_p.T64T|TARBP2_uc001sds.2_Intron|TARBP2_uc001sdt.2_Silent_p.T187T|TARBP2_uc001sdu.2_Silent_p.T64T|TARBP2_uc001sdv.2_RNA	NM_134323	NP_599150	Q15633	TRBP2_HUMAN	TAR RNA binding protein 2 isoform a	208	Sufficient for interaction with PRKRA.|DRBM 2.				miRNA loading onto RISC involved in gene silencing by miRNA|negative regulation of defense response to virus by host|negative regulation of protein kinase activity|positive regulation of viral genome replication|pre-miRNA processing|production of siRNA involved in RNA interference|regulation of transcription from RNA polymerase II promoter|regulation of translation|regulation of viral transcription|targeting of mRNA for destruction involved in RNA interference	cytosol|nucleus|perinuclear region of cytoplasm|RNA-induced silencing complex	double-stranded RNA binding|protein homodimerization activity|siRNA binding			central_nervous_system(1)	1						GGAGTGGCACTTCCAAAAAAT	0.577000													8	75					0	0	0.000442599	0	0
PDE1B	5153	broad.mit.edu	37	12	54966983	54966983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:54966983C>T	uc001sgd.1	+	8	953	c.787C>T	c.(787-789)CAT>TAT	p.H263Y	PDE1B_uc010soz.1_Missense_Mutation_p.H126Y|PDE1B_uc010spa.1_Missense_Mutation_p.H222Y|PDE1B_uc001sgf.2_Missense_Mutation_p.H126Y|PDE1B_uc001sge.2_Missense_Mutation_p.H243Y|PDE1B_uc009znq.2_Missense_Mutation_p.H59Y	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	263	Catalytic (By similarity).	Divalent metal cation 1.			activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						TGCAGCTATCCATGATTATGA	0.572000													15	77					0	0	0.00121646	0	0
OR6C1	390321	broad.mit.edu	37	12	55714509	55714509	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:55714509C>T	uc010spi.1	+	1	126	c.126C>T	c.(124-126)ACC>ACT	p.T42T		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	42	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						GGAACCTGACCCTTATCACAA	0.423000													5	24					0	0	0.000602214	0	0
OR6C65	403282	broad.mit.edu	37	12	55795116	55795116	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:55795116G>A	uc010spl.1	+	1	804	c.804G>A	c.(802-804)TTG>TTA	p.L268L		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTATGGCTTTGAGCAAAGGTG	0.388000													10	52					0	0	0.000978159	0	0
ITGA7	3679	broad.mit.edu	37	12	56087071	56087071	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:56087071G>A	uc001shh.2	-	20	2798	c.2578C>T	c.(2578-2580)CTG>TTG	p.L860L	ITGA7_uc001shg.2_Silent_p.L856L|ITGA7_uc010sps.1_Silent_p.L763L|ITGA7_uc009znw.2_Silent_p.L103L|ITGA7_uc009znx.2_Silent_p.L737L	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	900	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCAGAGCCCAGGGTTCTGAGC	0.483000													11	40					0	0	0.000978159	0	0
GPR182	11318	broad.mit.edu	37	12	57389215	57389215	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:57389215G>A	uc001smk.2	+	2	316	c.222G>A	c.(220-222)GTG>GTA	p.V74V	RDH16_uc010sqx.1_Intron	NM_007264	NP_009195	O15218	GP182_HUMAN	G protein-coupled receptor 182	74	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(1)	1						ACCTCCTGGTGATATGCGTCA	0.617000													21	96					0	0	0.000375601	0	0
KIF5A	3798	broad.mit.edu	37	12	57960968	57960968	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:57960968G>A	uc001sor.1	+	7	769	c.561G>A	c.(559-561)GGG>GGA	p.G187G	KIF5A_uc010srr.1_Silent_p.G98G	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	187	Kinesin-motor.|Microtubule-binding.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TTGATGAAGGGAAATCAAATC	0.507000													10	65					0	0	0.000978159	0	0
LIN7A	8825	broad.mit.edu	37	12	81205453	81205453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:81205453C>T	uc001szj.1	-	5	686	c.493G>A	c.(493-495)GGA>AGA	p.G165R	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	165	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						TGGTGTTCTCCTTCCACACTC	0.433000													12	40					0	0	0.000219431	0	0
KERA	11081	broad.mit.edu	37	12	91449292	91449292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:91449292G>A	uc001tbl.2	-	2	1386	c.767C>T	c.(766-768)TCA>TTA	p.S256L		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	256	LRR 8.				response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						AAATCCTCTTGATGGGAGACC	0.393000													6	24					0	0	0.00116845	0	0
PLXNC1	10154	broad.mit.edu	37	12	94654615	94654615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:94654615G>A	uc001tdc.2	+	20	3698	c.3449G>A	c.(3448-3450)CGG>CAG	p.R1150Q	PLXNC1_uc010sut.1_Missense_Mutation_p.R197Q|PLXNC1_uc009zsv.2_5'Flank	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1150	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						GGATTTCTCCGGGTAAGTGTC	0.483000													4	19					0	0	0.00024832	0	0
NTN4	59277	broad.mit.edu	37	12	96076520	96076520	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:96076520C>T	uc001tei.2	-	7	1922	c.1473G>A	c.(1471-1473)TGG>TGA	p.W491*	NTN4_uc009ztf.2_Nonsense_Mutation_p.W491*|NTN4_uc009ztg.2_Nonsense_Mutation_p.W454*	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	491					axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCGCATCCTCCCACTCCCAGG	0.463000													10	53					0	0	0.000673444	0	0
AMDHD1	144193	broad.mit.edu	37	12	96348739	96348739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:96348739G>A	uc001tel.1	+	3	401	c.295G>A	c.(295-297)GAA>AAA	p.E99K	AMDHD1_uc009zth.1_Intron	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	99					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						AAGAGTTCACGAATTTGCAAT	0.358000													9	38					0	0	0.00136819	0	0
HAL	3034	broad.mit.edu	37	12	96389549	96389549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:96389549G>A	uc001tem.1	-	2	437	c.140C>T	c.(139-141)TCC>TTC	p.S47F	HAL_uc009zti.1_RNA|HAL_uc010suw.1_5'UTR|HAL_uc010sux.1_Missense_Mutation_p.S47F	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	47					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	GTCATCCACGGAGGTGAAGCC	0.647000													4	23					0	0	0.00024832	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100491171	100491171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:100491171G>A	uc001tgq.2	-	6	870	c.641C>T	c.(640-642)TCA>TTA	p.S214L	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.S214L	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	214										ovary(2)	2						TCTGATTTTTGATTGGTTGGT	0.338000													9	24					0	0	0.000274275	0	0
NFYB	4801	broad.mit.edu	37	12	104517131	104517131	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:104517131G>C	uc001tkl.1	-	5	503	c.302C>G	c.(301-303)GCA>GGA	p.A101G	NFYB_uc001tkk.1_Missense_Mutation_p.A99G	NM_006166	NP_006157	P25208	NFYB_HUMAN	nuclear transcription factor Y, beta	101	B domain.					CCAAT-binding factor complex	repressing transcription factor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						CCTTTCACTTGCTTCAGATGT	0.358000													14	58					0	0	0.000219431	0	0
TMEM119	338773	broad.mit.edu	37	12	108985499	108985499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:108985499C>T	uc001tng.2	-	2	824	c.661G>A	c.(661-663)GGA>AGA	p.G221R	TMEM119_uc001tnf.2_RNA	NM_181724	NP_859075	Q4V9L6	TM119_HUMAN	transmembrane protein 119 precursor	221	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						ACCCCATGTCCCTGGACTTCC	0.697000													4	39					0	0	0.00024832	0	0
ACACB	32	broad.mit.edu	37	12	109703001	109703001	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:109703001C>T	uc001tob.2	+	51	7148	c.7029C>T	c.(7027-7029)ATC>ATT	p.I2343I	ACACB_uc001toc.2_Silent_p.I2343I|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.I1009I	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	2343					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	AGCAGGAGATCCTGCAGGCCA	0.642000													7	35					0	0	8.12818e-05	0	0
CCDC60	160777	broad.mit.edu	37	12	119909919	119909919	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:119909919C>T	uc001txe.2	+	3	756	c.291C>T	c.(289-291)TTC>TTT	p.F97F	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	97	Potential.									ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GAAATAAATTCCAGCCAGCCG	0.428000													22	111					0	0	0.000375601	0	0
MSI1	4440	broad.mit.edu	37	12	120783433	120783433	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:120783433G>A	uc001tye.1	-	14	1114	c.1050C>T	c.(1048-1050)GGC>GGT	p.G350G		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	350					nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAATCAAAGGGCCCTGAAAAG	0.567000													9	67					0	0	0.000219431	0	0
LRRC43	254050	broad.mit.edu	37	12	122684825	122684825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:122684825C>T	uc009zxm.2	+	8	1464	c.1439C>T	c.(1438-1440)CCA>CTA	p.P480L	LRRC43_uc001ubw.3_Missense_Mutation_p.P295L|LRRC43_uc009zxn.2_Missense_Mutation_p.P241L	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	480											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		GACCTGGTCCCACTGAAGGCC	0.642000													10	52					0	0	0.000978159	0	0
RIMBP2	23504	broad.mit.edu	37	12	130884333	130884333	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr12:130884333A>G	uc001uil.2	-	18	3187	c.3023T>C	c.(3022-3024)CTT>CCT	p.L1008P		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	1008	SH3 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TGAGGGCACAAGGCCTTTCTG	0.458000													4	34					0	0	0.00024832	0	0
RNF17	56163	broad.mit.edu	37	13	25370427	25370427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:25370427G>A	uc001upr.2	+	11	1434	c.1393G>A	c.(1393-1395)GAA>AAA	p.E465K	RNF17_uc010tdd.1_Missense_Mutation_p.E324K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E465K|RNF17_uc001ups.2_Missense_Mutation_p.E404K|RNF17_uc001upq.1_3'UTR	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	465					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		AGACATTTTGGAACTAGGTAA	0.299000													7	50					0	0	8.12818e-05	0	0
MTUS2	23281	broad.mit.edu	37	13	30066824	30066824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:30066824G>A	uc001usl.3	+	10	3635	c.3577G>A	c.(3577-3579)GAA>AAA	p.E1193K	MTUS2_uc001usm.3_Missense_Mutation_p.E162K|MTUS2_uc010aau.2_Missense_Mutation_p.E72K	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1183	Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGAATTGGAAGAAAATTTTGA	0.343000													12	45					0	0	0.000151284	0	0
C13orf33	84935	broad.mit.edu	37	13	31495937	31495937	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:31495937C>T	uc001uth.3	+	4	1082	c.741C>T	c.(739-741)ATC>ATT	p.I247I	uc001utg.1_Intron	NM_032849	NP_116238	Q5VYS4	CM033_HUMAN	hypothetical protein LOC84935	247											0		Lung SC(185;0.0281)		all cancers(112;0.00914)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.0559)|GBM - Glioblastoma multiforme(144;0.244)		AGCCTTTAATCCGAAGGAGCA	0.358000													5	51					0	0	0.00116845	0	0
C13orf26	122046	broad.mit.edu	37	13	31513852	31513852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:31513852C>T	uc001uti.2	+	2	102	c.83C>T	c.(82-84)TCC>TTC	p.S28F		NM_152325	NP_689538	Q8N6G2	CM026_HUMAN	hypothetical protein LOC122046	28										ovary(2)|skin(1)	3		Lung SC(185;0.0281)		all cancers(112;0.0176)|Epithelial(112;0.0768)|OV - Ovarian serous cystadenocarcinoma(117;0.0852)		AACTGGGATTCCTATGCTACC	0.353000													5	50					0	0	0.000602214	0	0
RXFP2	122042	broad.mit.edu	37	13	32376410	32376410	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:32376410G>A	uc001utt.2	+	18	2204	c.2133G>A	c.(2131-2133)AGG>AGA	p.R711R	RXFP2_uc010aba.2_Silent_p.R670R	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	711	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		AACATCAGAGGAAATCAATTT	0.353000													22	88					0	0	0.00152264	0	0
FRY	10129	broad.mit.edu	37	13	32798487	32798487	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:32798487C>T	uc001utx.2	+	37	5377	c.4881C>T	c.(4879-4881)CTC>CTT	p.L1627L	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1627					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TTGACTATCTCCCGGAGACCA	0.562000													4	29					0	0	0.00024832	0	0
NBEA	26960	broad.mit.edu	37	13	36158098	36158098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:36158098G>A	uc001uvb.2	+	46	7305	c.7099G>A	c.(7099-7101)GAT>AAT	p.D2367N	NBEA_uc010abi.2_Missense_Mutation_p.D1023N|NBEA_uc010tee.1_Missense_Mutation_p.D160N|NBEA_uc010tef.1_Missense_Mutation_p.D160N|NBEA_uc010teg.1_Missense_Mutation_p.D160N	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2367	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GACATGGGAAGATGATCAAAG	0.368000													26	94					0	0	0.000720815	0	0
FREM2	341640	broad.mit.edu	37	13	39263573	39263573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:39263573C>T	uc001uwv.2	+	1	2401	c.2092C>T	c.(2092-2094)CGC>TGC	p.R698C		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	698	CSPG 4.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TCCTGTGGATCGCCTCCCTCC	0.557000													9	44					0	0	0.000274275	0	0
SIAH3	283514	broad.mit.edu	37	13	46357980	46357980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:46357980C>T	uc001vap.2	-	2	430	c.348G>A	c.(346-348)TGG>TGA	p.W116*		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	116	SIAH-type; degenerate.				multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						GGCGGCCTTCCCACTGGCAGG	0.562000													12	47					0	0	0.000308642	0	0
ATP7B	540	broad.mit.edu	37	13	52508944	52508944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:52508944C>T	uc001vfw.2	-	21	4503	c.4346G>A	c.(4345-4347)GGG>GAG	p.G1449E	ATP7B_uc010adv.2_Missense_Mutation_p.G1019E|ATP7B_uc001vfx.2_Missense_Mutation_p.G1242E|ATP7B_uc001vfy.2_Missense_Mutation_p.G1338E|ATP7B_uc010tgt.1_Missense_Mutation_p.G1384E|ATP7B_uc010tgu.1_Missense_Mutation_p.G1401E|ATP7B_uc010tgv.1_Missense_Mutation_p.G1371E|ATP7B_uc001vfv.2_Missense_Mutation_p.G721E|ATP7B_uc010tgs.1_Missense_Mutation_p.G660E	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1449	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CCACTTGTCCCCATCATCGTC	0.617000									Wilson_disease				7	38					0	0	8.12818e-05	0	0
KLHL1	57626	broad.mit.edu	37	13	70549773	70549773	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:70549773T>C	uc001vip.2	-	2	1453	c.659A>G	c.(658-660)AAC>AGC	p.N220S	KLHL1_uc010thm.1_Intron	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	220	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TATCTTTCGGTTCCCAACAAT	0.408000													8	56					0	0	0.000442599	0	0
RNF219	79596	broad.mit.edu	37	13	79190253	79190253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:79190253G>A	uc001vkw.1	-	6	1702	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.S358L|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	548	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		GCTGTTGTCTGACTCTGACAT	0.423000													19	102					0	0	0.00121646	0	0
SPRY2	10253	broad.mit.edu	37	13	80911527	80911527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:80911527G>A	uc001vli.2	-	2	1292	c.314C>T	c.(313-315)GCC>GTC	p.A105V	SPRY2_uc001vlj.2_Missense_Mutation_p.A105V	NM_005842	NP_005833	O43597	SPY2_HUMAN	sprouty 2	105					epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein kinase B signaling cascade	cytosol|microtubule|ruffle membrane	protein serine/threonine kinase activator activity			ovary(1)|lung(1)	2	Medulloblastoma(90;0.18)	Acute lymphoblastic leukemia(28;0.218)|Breast(118;0.244)		GBM - Glioblastoma multiforme(99;0.0318)		GGACAGAGGGGCTCGTGCAGA	0.602000													11	56					0	0	0.000151284	0	0
RAB20	55647	broad.mit.edu	37	13	111176065	111176065	+	Missense_Mutation	SNP	C	T	T	rs141229904		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:111176065C>T	uc001vqy.2	-	2	857	c.652G>A	c.(652-654)GAT>AAT	p.D218N		NM_017817	NP_060287	Q9NX57	RAB20_HUMAN	RAB20, member RAS oncogene family	218					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	all_cancers(4;1.54e-11)|all_epithelial(4;1.22e-06)|all_lung(23;1e-05)|Lung NSC(43;0.000453)|Colorectal(4;0.00323)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.197)			CTGGATATATCCACTGTGTGT	0.542000													4	24					0	0	0.00024832	0	0
FAM70B	348013	broad.mit.edu	37	13	114469202	114469202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:114469202C>T	uc001vuh.2	+	2	188	c.161C>T	c.(160-162)ACC>ATC	p.T54I	FAM70B_uc010tkh.1_Missense_Mutation_p.T54I	NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	54						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			GAGAATGTGACCGTTGGGGGC	0.652000													7	44					0	0	0.000157383	0	0
ZNF828	283489	broad.mit.edu	37	13	115090796	115090796	+	Silent	SNP	C	T	T	rs142049023		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr13:115090796C>T	uc010ahb.2	+	3	1808	c.1479C>T	c.(1477-1479)TTC>TTT	p.F493F	ZNF828_uc001vuv.2_Silent_p.F493F|ZNF828_uc010tko.1_Silent_p.F493F	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	493	Mediates localization to the spindle and the kinetochore and is required for the attachment of spindle microtubules to the kinetochore.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AACCTGTCTTCCCTGAGACCC	0.498000													26	157					0	0	0.000720815	0	0
P704P	641455	broad.mit.edu	37	14	20019837	20019837	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:20019837G>A	uc001vwc.3	-	1	436	c.384C>T	c.(382-384)TTC>TTT	p.F128F	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	128											0						TCGGCTCCATGAAAGCGCTGT	0.602000													13	131					0	0	0.000422831	0	0
CCNB1IP1	57820	broad.mit.edu	37	14	20779823	20779823	+	Silent	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:20779823C>A	uc001vwv.2	-	7	1369	c.720G>T	c.(718-720)GCG>GCT	p.A240A	CCNB1IP1_uc001vww.2_Silent_p.A240A|CCNB1IP1_uc001vwx.2_Silent_p.A240A|CCNB1IP1_uc001vwy.2_Silent_p.A240A|CCNB1IP1_uc001vwz.2_Silent_p.A240A	NM_182851	NP_878271	Q9NPC3	CIP1_HUMAN	cyclin B1 interacting protein 1 isoform 3	240						chromosome|nucleus	ligase activity|metal ion binding|protein binding		HMGA2/CCNB1IP1(2)	soft_tissue(2)|ovary(1)	3	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;8.86e-07)|all cancers(55;4.98e-06)	GBM - Glioblastoma multiforme(265;0.0164)		TGGGAGAACCCGCAAAAAATG	0.458000			T	HMGA2	leiomyoma								9	124					0.000442599	0.00258052	0.000442599	1	0
RNASE3	6037	broad.mit.edu	37	14	21360228	21360228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:21360228G>A	uc001vyj.2	+	2	437	c.383G>A	c.(382-384)AGA>AAA	p.R128K		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	128					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	TATGCAGACAGACCAGGAAGG	0.473000													12	48					0	0	0.000978159	0	0
OR10G2	26534	broad.mit.edu	37	14	22102213	22102213	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:22102213G>A	uc010tmc.1	-	1	786	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	262	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TAAGGTAGATGAAAATACAGG	0.547000													7	41					0	0	0.000157383	0	0
OR4E2	26686	broad.mit.edu	37	14	22133973	22133973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:22133973G>A	uc010tmd.1	+	1	677	c.677G>A	c.(676-678)CGA>CAA	p.R226Q		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		GTTTCTCTTCGAAAACACTCA	0.502000													9	41					0	0	0.000442599	0	0
MYH6	4624	broad.mit.edu	37	14	23871969	23871969	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:23871969G>A	uc001wjv.2	-	11	1006	c.939C>T	c.(937-939)TTC>TTT	p.F313F	MYH6_uc010akp.1_Silent_p.F313F	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	313	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		CCTGAGACACGAAGGCGTAGT	0.458000													5	13					0	0	0.00116845	0	0
MYH7	4625	broad.mit.edu	37	14	23896073	23896073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:23896073C>T	uc001wjx.2	-	18	2063	c.1957G>A	c.(1957-1959)GAA>AAA	p.E653K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	653	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TTCAGATTTTCCTGTGGCCAA	0.348000													9	24					0	0	0.000274275	0	0
SCFD1	23256	broad.mit.edu	37	14	31191117	31191117	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:31191117C>T	uc001wqm.1	+	22	1788	c.1764C>T	c.(1762-1764)TTC>TTT	p.F588F	SCFD1_uc001wqn.1_Silent_p.F521F|SCFD1_uc010tpg.1_Silent_p.F529F|SCFD1_uc010tph.1_Silent_p.F403F|SCFD1_uc010amf.1_Silent_p.F403F|SCFD1_uc010tpi.1_Silent_p.F496F|SCFD1_uc010ame.1_Intron	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a	588					post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		AAAATCCATTCCAAGAGGTAA	0.333000													10	76					0	0	0.000673444	0	0
HEATR5A	25938	broad.mit.edu	37	14	31817009	31817009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:31817009G>A	uc001wrf.3	-	13	2011	c.1934C>T	c.(1933-1935)TCT>TTT	p.S645F	HEATR5A_uc010ami.2_Missense_Mutation_p.S543F|HEATR5A_uc001wrg.1_Missense_Mutation_p.S527F|HEATR5A_uc010tpk.1_Missense_Mutation_p.S938F	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	932							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		TCCAATACAAGAATTTAGGTG	0.428000													4	18					0	0	0.000602214	0	0
BAZ1A	11177	broad.mit.edu	37	14	35263973	35263973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:35263973G>A	uc001wsk.2	-	11	1913	c.1345C>T	c.(1345-1347)CCT>TCT	p.P449S	BAZ1A_uc001wsl.2_Missense_Mutation_p.P449S	NM_013448	NP_038476	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	449	DDT.				chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			lung(2)|central_nervous_system(2)|ovary(1)|breast(1)|skin(1)	7	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		ACTCCATCAGGAAACTCATCT	0.254000													11	75					0	0	0.000978159	0	0
PNN	5411	broad.mit.edu	37	14	39647078	39647079	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:39647078_39647079CC>AA	uc001wuw.3	+	6	553_554	c.456_457CC>AA	c.(454-459)ACCCTT>ACAATT	p.L153I		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	153	Necessary for interaction with RNPS1.|Necessary for mediating alternative 5' splicing.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		TGATGGGTACCCTTCAAAAATT	0.312000													10	326					0	0	6.4e-05	0	0
L2HGDH	79944	broad.mit.edu	37	14	50750674	50750674	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:50750674G>A	uc001wxu.2	-	5	697	c.618C>T	c.(616-618)TTC>TTT	p.F206F	L2HGDH_uc010tqn.1_Silent_p.F206F|L2HGDH_uc010tqo.1_Silent_p.F206F	NM_024884	NP_079160	Q9H9P8	L2HDH_HUMAN	L-2-hydroxyglutarate dehydrogenase precursor	206					2-oxoglutarate metabolic process|cellular protein metabolic process	integral to mitochondrial inner membrane	2-hydroxyglutarate dehydrogenase activity			ovary(2)	2	all_epithelial(31;0.000599)|Breast(41;0.0102)					CTGCTTCTTGGAAATCCTGGG	0.408000													10	63					0	0	0.00136819	0	0
TRIM9	114088	broad.mit.edu	37	14	51477128	51477128	+	Missense_Mutation	SNP	C	T	T	rs142156620		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:51477128C>T	uc001wyx.3	-	4	1891	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K	TRIM9_uc001wyy.2_Missense_Mutation_p.E376K|TRIM9_uc001wyz.3_Missense_Mutation_p.E376K	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	376	COS.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding	p.E376K(1)		skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GGATCATTTTCCTTAATCACC	0.418000													17	64					0	0	0.00152264	0	0
NID2	22795	broad.mit.edu	37	14	52472502	52472502	+	Missense_Mutation	SNP	C	T	T	rs149021065		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:52472502C>T	uc001wzo.2	-	21	4304	c.4070G>A	c.(4069-4071)CGA>CAA	p.R1357Q	NID2_uc010tqs.1_Missense_Mutation_p.R1309Q|NID2_uc010tqt.1_Missense_Mutation_p.R1357Q	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	1357	LDL-receptor class B 5.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GAGGTGAGATCGTTGTTCTGG	0.438000													7	39					0	0	0.000442599	0	0
C14orf101	54916	broad.mit.edu	37	14	57114104	57114104	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:57114104C>T	uc001xcm.2	+	16	2135	c.2013C>T	c.(2011-2013)TTC>TTT	p.F671F	C14orf101_uc001xcj.2_RNA|C14orf101_uc001xcn.2_RNA|C14orf101_uc010trf.1_Silent_p.F204F|C14orf101_uc001xco.2_Silent_p.F204F	NM_017799	NP_060269	Q9NX78	CN101_HUMAN	hypothetical protein LOC54916	671						integral to membrane				breast(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(311;0.226)		TCAGACATTTCCGTCTGTACT	0.463000													8	49					0	0	0.000157383	0	0
DHRS7	51635	broad.mit.edu	37	14	60616224	60616224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:60616224C>T	uc001xes.2	-	6	1003	c.819G>A	c.(817-819)ATG>ATA	p.M273I	C14orf135_uc001xeq.2_Intron|DHRS7_uc001xet.2_Missense_Mutation_p.M223I|DHRS7_uc001xeu.2_Missense_Mutation_p.M273I	NM_016029	NP_057113	Q9Y394	DHRS7_HUMAN	dehydrogenase/reductase (SDR family) member 7	273							binding|oxidoreductase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.121)		TGCTGATTAACATCAGCCGCA	0.403000													8	46					0	0	0.000274275	0	0
KCNH5	27133	broad.mit.edu	37	14	63174573	63174573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:63174573G>A	uc001xfx.2	-	11	2671	c.2620C>T	c.(2620-2622)CGT>TGT	p.R874C	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	874	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTATCCAAACGAAGGTCACTT	0.507000													11	48					0	0	0.00136819	0	0
SYNE2	23224	broad.mit.edu	37	14	64519011	64519011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:64519011C>T	uc001xgm.2	+	48	8610	c.8380C>T	c.(8380-8382)CCT>TCT	p.P2794S	SYNE2_uc001xgl.2_Missense_Mutation_p.P2794S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2794	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AGATAAGGTTCCTAGCCTTAC	0.408000													5	48					0	0	0.000602214	0	0
HSPA2	3306	broad.mit.edu	37	14	65008275	65008275	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:65008275C>T	uc001xhj.2	+	2	784	c.708C>T	c.(706-708)TTC>TTT	p.F236F	HSPA2_uc001xhk.3_Silent_p.F236F	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	236					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		GTGAGGACTTCGACAACCGCA	0.637000													8	66					0	0	0.000274275	0	0
ACTN1	87	broad.mit.edu	37	14	69371394	69371394	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:69371394G>A	uc001xkl.2	-	7	964	c.654C>T	c.(652-654)ATC>ATT	p.I218I	ACTN1_uc010ttb.1_Silent_p.I153I|ACTN1_uc001xkm.2_Silent_p.I218I|ACTN1_uc001xkn.2_Silent_p.I218I|ACTN1_uc001xko.1_Silent_p.I153I|ACTN1_uc010ttd.1_Silent_p.I197I	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	218	CH 2.|Actin-binding.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		GCATCTTGGGGATGTCCAGGT	0.542000													8	40					0	0	0.00136819	0	0
NRXN3	9369	broad.mit.edu	37	14	79175787	79175787	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:79175787G>A	uc001xun.2	+	4	821	c.330G>A	c.(328-330)CTG>CTA	p.L110L	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.L244L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	483	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CCAATGGCCTGATCCTCTTCA	0.517000													12	35					0	0	0.000219431	0	0
NRXN3	9369	broad.mit.edu	37	14	80164238	80164238	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:80164238G>A	uc001xun.2	+	15	3254	c.2763G>A	c.(2761-2763)GCG>GCA	p.A921A	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Silent_p.A289A|NRXN3_uc010asw.2_Silent_p.A319A|NRXN3_uc001xur.3_Silent_p.A289A	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1294	Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTACAATGGCGACTACCACAA	0.438000													5	12					0	0	0.00116845	0	0
GALC	2581	broad.mit.edu	37	14	88450795	88450795	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:88450795G>A	uc001xvt.2	-	5	924	c.525C>T	c.(523-525)GTC>GTT	p.V175V	GALC_uc010tvx.1_Silent_p.V149V|GALC_uc010tvy.1_Silent_p.V152V|GALC_uc010tvz.1_Silent_p.V119V|GALC_uc001xvu.1_Silent_p.V175V	NM_000153	NP_000144	P54803	GALC_HUMAN	galactosylceramidase isoform a precursor	175					carbohydrate metabolic process|galactosylceramide catabolic process	lysosome	cation binding|galactosylceramidase activity				0						TCCAGGTCACGACATAATAGG	0.433000													7	36					0	0	0.000157383	0	0
PTPN21	11099	broad.mit.edu	37	14	88945348	88945348	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:88945348G>A	uc001xwv.3	-	13	2758	c.2427C>T	c.(2425-2427)GCC>GCT	p.A809A	PTPN21_uc010twc.1_Silent_p.A605A	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	809						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						AGTCCCTCCGGGCTCGGTAGC	0.662000													6	51					0	0	0.00116845	0	0
C14orf102	55051	broad.mit.edu	37	14	90745472	90745472	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:90745472G>A	uc001xyi.1	-	13	3334	c.3303C>T	c.(3301-3303)TCC>TCT	p.S1101S	C14orf102_uc010atp.1_Silent_p.S606S|C14orf102_uc001xyj.1_Silent_p.S870S|C14orf102_uc001xyk.1_Silent_p.S293S	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	1101	HAT 5.						protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		TATTTCCTAAGGAAACCTGAG	0.468000													21	77					0	0	0.00152264	0	0
C14orf102	55051	broad.mit.edu	37	14	90798277	90798277	+	Translation_Start_Site	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:90798277T>C	uc001xyi.1	-	1	3	c.-28A>G	c.(-30--26)ATAGA>ATGGA		C14orf102_uc001xyj.1_Translation_Start_Site	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1								protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		CGTTCTTCTCTATAGGGATGG	0.647000													8	34					0	0	0.000157383	0	0
TTC7B	145567	broad.mit.edu	37	14	91124698	91124698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:91124698C>T	uc001xyp.2	-	10	1308	c.1186G>A	c.(1186-1188)GAA>AAA	p.E396K	TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	396	TPR 3.						binding			ovary(2)	2		Melanoma(154;0.222)				AGGTGGAATTCCTCAAAGGCA	0.463000													21	82					0	0	0.000295444	0	0
RTL1	388015	broad.mit.edu	37	14	101350937	101350937	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:101350937G>A	uc010txj.1	-	1	248	c.189C>T	c.(187-189)CTC>CTT	p.L63L	uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	63										pancreas(1)	1						CCATTTCCTGGAGTGGGCCAC	0.622000													6	28					0	0	0.00116845	0	0
RTL1	388015	broad.mit.edu	37	14	101350961	101350961	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:101350961C>T	uc010txj.1	-	1	224	c.165G>A	c.(163-165)AAG>AAA	p.K55K	uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	55										pancreas(1)	1						GGGGCTCCTTCTTTTCCTGGG	0.622000													5	18					0	0	0.000602214	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103440442	103440442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:103440442G>A	uc001ymi.1	-	12	1784	c.1552C>T	c.(1552-1554)CGC>TGC	p.R518C		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	518	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CGCTCTTGGCGAAGCGCCACT	0.557000													8	31					0	0	0.000157383	0	0
ADAM6	8755	broad.mit.edu	37	14	106208520	106208520	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:106208520G>A	uc010tyt.1	-	3627		c.58694C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_5'UTR|uc001ysf.2_5'UTR					Parts of antibodies, mostly variable regions.												0						GGGTTTTGGGGGGAAGAGGAA	0.617000													11	61					0	0	0.000308642	0	0
ADAM6	8755	broad.mit.edu	37	14	106235703	106235703	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr14:106235703G>A	uc010tyt.1	-	3617		c.58144C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						TGCTGTAGAGGAAGAAGGAGC	0.602000													17	124					0	0	0.00152264	0	0
Unknown	0	broad.mit.edu	37	15	20644853	20644853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:20644853C>T	uc001ytg.2	-	21	3114	c.2405G>A	c.(2404-2406)AGG>AAG	p.R802K	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.R802K|uc010tyy.1_Missense_Mutation_p.R802K					RecName: Full=Putative HERC2-like protein 3;																		GTCCCTCGCCCTTTCGGTCTT	0.453000													9	41					0	0	0.00136819	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414343	22414343	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:22414343G>A	uc001yuf.2	+	1	642	c.642G>A	c.(640-642)GTG>GTA	p.V214V		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						ACCAGGAAGTGAAAGCTTCCA	0.363000													5	35					0	0	0.000602214	0	0
C15orf2	23742	broad.mit.edu	37	15	24921801	24921801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:24921801C>T	uc001ywo.2	+	1	1261	c.787C>T	c.(787-789)CCT>TCT	p.P263S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	263					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		AACAGCGCCCCCTGAGCCAGC	0.642000													5	44					0	0	0.000602214	0	0
C15orf2	23742	broad.mit.edu	37	15	24922351	24922351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:24922351C>T	uc001ywo.2	+	1	1811	c.1337C>T	c.(1336-1338)ACC>ATC	p.T446I		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	446	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCACTTTCCACCACACCAAAA	0.507000													9	77					0	0	0.000442599	0	0
C15orf2	23742	broad.mit.edu	37	15	24924364	24924364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:24924364C>T	uc001ywo.2	+	1	3824	c.3350C>T	c.(3349-3351)CCT>CTT	p.P1117L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1117					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCTTGTGTTCCTGCTTTTCAA	0.488000													16	51					0	0	0.000566183	0	0
TRPM1	4308	broad.mit.edu	37	15	31342697	31342697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:31342697C>T	uc001zfm.2	-	11	1414	c.1286G>A	c.(1285-1287)GGA>GAA	p.G429E	TRPM1_uc010azy.2_Missense_Mutation_p.G336E|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	429	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		tttcccttttcctcttcctcc	0.413000													11	29					0	0	0.000673444	0	0
TUBGCP4	27229	broad.mit.edu	37	15	43692279	43692279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:43692279C>T	uc001zro.2	+	14	1699	c.1459C>T	c.(1459-1461)CGG>TGG	p.R487W	TUBGCP4_uc001zrn.2_Missense_Mutation_p.R486W|TUBGCP4_uc010bdh.2_RNA	NM_014444	NP_055259	Q9UGJ1	GCP4_HUMAN	tubulin, gamma complex associated protein 4	487					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	structural constituent of cytoskeleton			ovary(3)	3		all_cancers(109;1.27e-10)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.72e-06)|all_lung(180;1.59e-05)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;3.53e-07)		GAGTGTGCGCCGGGTGCAAGC	0.483000													4	25					0	0	0.00024832	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827390	43827390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:43827390G>A	uc001zrw.2	-	31	3967	c.3784C>T	c.(3784-3786)CCT>TCT	p.P1262S	PPIP5K1_uc001zrx.1_Missense_Mutation_p.P1235S|PPIP5K1_uc001zru.2_Missense_Mutation_p.P1237S|PPIP5K1_uc001zry.3_Missense_Mutation_p.P1237S|PPIP5K1_uc001zrv.2_Missense_Mutation_p.P1023S	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1262					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						CTGATGTCAGGGACCTCCTGA	0.562000													7	39					0	0	8.12818e-05	0	0
FBN1	2200	broad.mit.edu	37	15	48704768	48704768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:48704768C>T	uc001zwx.1	-	65	8552	c.8224G>A	c.(8224-8226)GAG>AAG	p.E2742K	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2742					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TGACCCACCTCGATATTGGAG	0.498000													11	41					0	0	0.000151284	0	0
FGF7	2252	broad.mit.edu	37	15	49776595	49776595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:49776595G>A	uc001zxn.2	+	4	1008	c.479G>A	c.(478-480)GGA>GAA	p.G160E	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	160					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	ACACACAACGGAGGGGAAATG	0.353000													5	29					0	0	8.12818e-05	0	0
CGNL1	84952	broad.mit.edu	37	15	57731321	57731321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:57731321G>A	uc002aeg.2	+	2	1200	c.1124G>A	c.(1123-1125)CGA>CAA	p.R375Q	CGNL1_uc010bfw.2_Missense_Mutation_p.R375Q	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	375	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TCTGGGAAGCGAAACAGAATT	0.438000													28	45					0	0	0.00106085	0	0
IGDCC4	57722	broad.mit.edu	37	15	65677350	65677350	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:65677350G>T	uc002aou.1	-	19	3494	c.3284C>A	c.(3283-3285)CCC>CAC	p.P1095H	IGDCC4_uc002aot.1_Missense_Mutation_p.P683H	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1095	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TCCAGCAGGGGGCAGCAGGGC	0.672000											OREG0023195	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	45					2.21704e-12	1.31717e-11	0.000375601	1	0
ITGA11	22801	broad.mit.edu	37	15	68641217	68641217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:68641217G>A	uc002ari.2	-	10	1169	c.1082C>T	c.(1081-1083)TCC>TTC	p.S361F	ITGA11_uc010bib.2_Missense_Mutation_p.S361F	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	361	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	CAGCCCAAAGGAGGTCTCGTT	0.587000													5	11					0	0	0.000602214	0	0
UACA	55075	broad.mit.edu	37	15	70970503	70970503	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:70970503T>G	uc002asr.2	-	11	1038	c.934A>C	c.(934-936)AAA>CAA	p.K312Q	UACA_uc010uke.1_Missense_Mutation_p.K203Q|UACA_uc002asq.2_Missense_Mutation_p.K299Q|UACA_uc010bin.1_Missense_Mutation_p.K298Q	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	312	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						TGCTGAATTTTTCTCAACCTC	0.308000													30	58					0	0	0.000409698	0	0
THSD4	79875	broad.mit.edu	37	15	72050291	72050291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:72050291G>A	uc002atb.1	+	14	2545	c.2466G>A	c.(2464-2466)ATG>ATA	p.M822I	THSD4_uc002ate.2_Missense_Mutation_p.M462I|THSD4_uc002atg.1_Missense_Mutation_p.M25I	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	822	TSP type-1 4.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						TGGTGTGCATGACCAACCATG	0.657000													13	17					0	0	0.000566183	0	0
Unknown	0	broad.mit.edu	37	15	73191932	73191932	+	RNA	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:73191932C>T	uc002avl.1	-	1		c.760G>A								full-length cDNA clone CS0DI007YP06 of Placenta Cot 25-normalized of Homo sapiens (human).																		TTTTTTTTTTCCTGTTTCTTG	0.373000													6	6					0	0	0.00116845	0	0
SH2D7	646892	broad.mit.edu	37	15	78390920	78390920	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:78390920C>T	uc010blb.1	+	4	627	c.627C>T	c.(625-627)TCC>TCT	p.S209S		NM_001101404	NP_001094874	A6NKC9	SH2D7_HUMAN	SH2 domain containing 7	209											0						GGAACCTCTCCCAGGAGGAAA	0.617000													3	7					0	0	6.4e-05	0	0
IREB2	3658	broad.mit.edu	37	15	78786279	78786279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:78786279G>A	uc002bdr.2	+	19	2515	c.2353G>A	c.(2353-2355)GGA>AGA	p.G785R	IREB2_uc010unb.1_Missense_Mutation_p.G535R	NM_004136	NP_004127	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	785							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		CAACTCTTACGGAGCTCGAAG	0.358000													9	70					0	0	0.000978159	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635163	82635163	+	RNA	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:82635163C>G	uc002bgx.2	-	5		c.417G>C						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						CCCTGTTCTCCGCAGCCCGAA	0.478000													7	11					0	0	8.12818e-05	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581959	84581959	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:84581959G>A	uc002bjz.3	+	16	2040	c.1816G>A	c.(1816-1818)GAG>AAG	p.E606K	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.E606K|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.E606K	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	606	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGAGCTGCCCGAGGAAGAGTG	0.637000													12	41					0	0	0.000978159	0	0
ALPK3	57538	broad.mit.edu	37	15	85411358	85411358	+	Missense_Mutation	SNP	G	A	A	rs34851446		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:85411358G>A	uc002ble.2	+	14	5562	c.5395G>A	c.(5395-5397)GAA>AAA	p.E1799K	ALPK3_uc010upc.1_Missense_Mutation_p.E100K	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1799	Alpha-type protein kinase.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GGGCCTCAAGGAAAGCTGCTT	0.637000													13	96					0	0	0.000422831	0	0
BLM	641	broad.mit.edu	37	15	91293016	91293017	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:91293016_91293017CC>AA	uc002bpr.2	+	3	615_616	c.518_519CC>AA	c.(517-519)CCC>CAA	p.P173Q	BLM_uc010uqh.1_Missense_Mutation_p.P173Q|BLM_uc010uqi.1_5'UTR|BLM_uc010bnx.2_Missense_Mutation_p.P173Q	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	173					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			GTTACACCACCCCAAAGTCACT	0.347000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				13	531					0	0	6.4e-05	0	0
BLM	641	broad.mit.edu	37	15	91346911	91346912	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:91346911_91346912CG>AT	uc002bpr.2	+	18	3616_3617	c.3519_3520CG>AT	c.(3517-3522)CTCGGA>CTATGA	p.G1174*	BLM_uc010uqh.1_Nonsense_Mutation_p.G1174*|BLM_uc010uqi.1_Nonsense_Mutation_p.G799*|BLM_uc010bnx.2_Intron|BLM_uc002bpt.2_Nonsense_Mutation_p.G149*	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	1174					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			ATGTGATGCTCGGAAATAAAGC	0.317000			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				12	602					0	0	6.4e-05	0	0
MAN2A2	4122	broad.mit.edu	37	15	91449666	91449667	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:91449666_91449667CC>AA	uc010bnz.2	+	6	889_890	c.774_775CC>AA	c.(772-777)TCCCAC>TCAAAC	p.H259N	MAN2A2_uc010boa.2_Missense_Mutation_p.H301N|MAN2A2_uc002bqc.2_Missense_Mutation_p.H259N|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	259	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			AGGCCAATTCCCACTACTTTGC	0.569000													11	415					0	0	6.4e-05	0	0
PRC1	9055	broad.mit.edu	37	15	91523483	91523484	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:91523483_91523484GG>TT	uc002bqm.2	-	7	1115_1116	c.958_959CC>AA	c.(958-960)CCT>AAT	p.P320N	PRC1_uc002bqn.2_Missense_Mutation_p.P320N|PRC1_uc002bqo.2_Missense_Mutation_p.P320N|PRC1_uc010uqs.1_Missense_Mutation_p.P279N	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	320	Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					AGCACAGAAAGGGGCAAAAGCT	0.317000													10	288					0	0	6.4e-05	0	0
SV2B	9899	broad.mit.edu	37	15	91835696	91835697	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:91835696_91835697CC>AA	uc002bqv.2	+	12	2357_2358	c.1966_1967CC>AA	c.(1966-1968)CCC>AAC	p.P656N	SV2B_uc010uqv.1_Missense_Mutation_p.P505N|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	656	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CAAAGTGGTCCCCATCCTTCTG	0.510000													11	473					0	0	6.4e-05	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981673	92981673	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:92981673C>T	uc002bra.2	+	4	536	c.381C>T	c.(379-381)TTC>TTT	p.F127F	ST8SIA2_uc002brb.2_Silent_p.F106F	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	127	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			ATTACATCTTCGATCGAGACA	0.463000													20	140					0	0	0.00121646	0	0
OR4F6	390648	broad.mit.edu	37	15	102346078	102346078	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:102346078C>T	uc010utr.1	+	1	156	c.156C>T	c.(154-156)GAC>GAT	p.D52D		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TGACCTCTGACCCTCGTTTAC	0.468000													76	154					0	0	0.000781405	0	0
OR4F6	390648	broad.mit.edu	37	15	102346092	102346092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr15:102346092C>T	uc010utr.1	+	1	170	c.170C>T	c.(169-171)TCC>TTC	p.S57F		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	57	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CGTTTACAGTCCCCCATGTAC	0.463000													75	153					0	0	0.000781405	0	0
GRIN2A	2903	broad.mit.edu	37	16	10273953	10273953	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:10273953G>A	uc002czo.3	-	2	864	c.316C>T	c.(316-318)CAG>TAG	p.Q106*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.Q106*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.Q106*|GRIN2A_uc010buk.2_Nonsense_Mutation_p.Q106*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	106	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACGGCCTCCTGGTCCGTGTCG	0.602000													12	52					0	0	0.000219431	0	0
CIITA	4261	broad.mit.edu	37	16	11001701	11001701	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:11001701G>A	uc002dai.3	+	11	2485	c.2352G>A	c.(2350-2352)AGG>AGA	p.R784R	CIITA_uc002daj.3_Silent_p.R785R|CIITA_uc002dak.3_Intron|CIITA_uc002dag.2_Silent_p.R784R|CIITA_uc002dah.2_Silent_p.R736R|CIITA_uc010bup.1_Intron	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	784					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						CGGTGGACAGGAAGCAGAAGG	0.706000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								11	41					0	0	0.000673444	0	0
TNFRSF17	608	broad.mit.edu	37	16	12060121	12060121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:12060121C>T	uc002dbv.2	+	2	418	c.200C>T	c.(199-201)TCT>TTT	p.S67F	TNFRSF17_uc010buy.2_Missense_Mutation_p.S67F|TNFRSF17_uc010buz.2_Intron	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	67	Helical; Signal-anchor for type III membrane protein; (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						TTAATAATTTCTTTGGCAGTT	0.373000			T	IL2	intestinal T-cell lymphoma								15	47					0	0	0.000566183	0	0
MKL2	57496	broad.mit.edu	37	16	14306221	14306221	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:14306221C>T	uc010uza.1	+	5	386	c.231C>T	c.(229-231)AGC>AGT	p.S77S	MKL2_uc002dcg.2_Silent_p.S77S|MKL2_uc002dch.2_Silent_p.S66S|MKL2_uc010uzb.1_Silent_p.S26S	NM_014048	NP_054767	Q9ULH7	MKL2_HUMAN	megakaryoblastic leukemia 2 protein	66					cell differentiation|muscle organ development|positive regulation of striated muscle tissue development|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		identical protein binding|nucleic acid binding|transcription coactivator activity			ovary(3)|kidney(1)|pancreas(1)	5						CTTTGAAGAGCCCAGCGGCAT	0.378000													6	35					0	0	0.000157383	0	0
TMC5	79838	broad.mit.edu	37	16	19471576	19471576	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:19471576C>T	uc002dgc.3	+	6	1817	c.1068C>T	c.(1066-1068)TCC>TCT	p.S356S	TMC5_uc010vaq.1_Silent_p.S356S|TMC5_uc002dgb.3_Silent_p.S356S|TMC5_uc010var.1_Silent_p.S356S|TMC5_uc002dgd.1_Silent_p.S110S|TMC5_uc002dge.3_Silent_p.S110S|TMC5_uc002dgf.3_Silent_p.S18S|TMC5_uc002dgg.3_5'UTR	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	356	Extracellular (Potential).					integral to membrane				skin(1)	1						TAATCGCATCCCTTATACCCA	0.388000													5	39					0	0	0.00116845	0	0
ACSM2B	348158	broad.mit.edu	37	16	20563565	20563565	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:20563565C>T	uc002dhj.3	-	7	1005	c.795G>A	c.(793-795)TGG>TGA	p.W265*	ACSM2B_uc002dhk.3_Nonsense_Mutation_p.W265*|ACSM2B_uc010bwf.1_Nonsense_Mutation_p.W265*	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	265					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGTTCAGTATCCAACCTGTGT	0.433000													17	75					0	0	0.00121646	0	0
DNAH3	55567	broad.mit.edu	37	16	21042505	21042505	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:21042505C>T	uc010vbe.1	-	37	5301	c.5301G>A	c.(5299-5301)TGG>TGA	p.W1767*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1767	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CACCATCCATCCACTCGTGGC	0.502000													7	61					0	0	0.000274275	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24942649	24942649	+	Silent	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:24942649T>A	uc002dnb.2	-	19	2064	c.1971A>T	c.(1969-1971)TCA>TCT	p.S657S	ARHGAP17_uc002dmx.2_5'UTR|ARHGAP17_uc002dmw.2_5'UTR|ARHGAP17_uc002dmy.2_Silent_p.S102S|ARHGAP17_uc002dmz.2_Silent_p.S181S|ARHGAP17_uc002dna.2_Silent_p.S384S|ARHGAP17_uc002dnc.2_Silent_p.S579S|ARHGAP17_uc010vcf.1_Silent_p.S400S|ARHGAP17_uc002dne.1_5'UTR	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	657	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		GAGATGTTCCTGAAGAACTCT	0.597000													11	82					0	0	0.000673444	0	0
C16orf82	162083	broad.mit.edu	37	16	27078340	27078340	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:27078340C>T	uc010vcm.1	+	1	122	c.24C>T	c.(22-24)CCC>CCT	p.P8P		NM_001145545	NP_001139017	Q7Z2V1	TNT_HUMAN	hypothetical protein LOC162083	71											0						TTCAGCTGCCCCCCATTTTTC	0.567000													7	20					0	0	0.000274275	0	0
KIAA0556	23247	broad.mit.edu	37	16	27786297	27786297	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:27786297C>T	uc002dow.2	+	24	4365	c.4341C>T	c.(4339-4341)TCC>TCT	p.S1447S		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1447										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						GCGTGAACTCCCTGGAGGGTG	0.617000													11	36					0	0	0.00136819	0	0
MVP	9961	broad.mit.edu	37	16	29848075	29848075	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:29848075C>T	uc002dui.2	+	7	789	c.705C>T	c.(703-705)TTC>TTT	p.F235F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Silent_p.F235F|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	235	MVP 5.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GGCGGAACTTCCGGGACTTCA	0.627000													9	24					0	0	0.000274275	0	0
SNX20	124460	broad.mit.edu	37	16	50711414	50711414	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:50711414C>T	uc002egk.2	-	2	197	c.24G>A	c.(22-24)GGG>GGA	p.G8G	SNX20_uc010vgp.1_Silent_p.G8G|SNX20_uc002egi.3_Silent_p.G8G	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	8					cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						AGCCAGGGCTCCCAGGGTGCT	0.657000													7	45					0	0	0.000157383	0	0
LPCAT2	54947	broad.mit.edu	37	16	55559453	55559453	+	Missense_Mutation	SNP	C	T	T	rs143609573		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:55559453C>T	uc002eie.3	+	2	386	c.205C>T	c.(205-207)CGT>TGT	p.R69C		NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	69	Helical; Signal-anchor for type II membrane protein; (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						GCTTCCAATTCGTGTCTTATT	0.358000													10	40					0	0	0.000978159	0	0
RSPRY1	89970	broad.mit.edu	37	16	57243085	57243085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:57243085C>T	uc002elb.2	+	4	780	c.502C>T	c.(502-504)CCA>TCA	p.P168S	RSPRY1_uc002elc.2_Missense_Mutation_p.P168S|RSPRY1_uc002eld.2_Missense_Mutation_p.P168S	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	168						extracellular region	zinc ion binding			ovary(1)	1						AGATGAATGTCCATTGCCCAC	0.348000													17	103					0	0	0.000958276	0	0
MMP15	4324	broad.mit.edu	37	16	58072257	58072257	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:58072257C>T	uc002ena.2	+	3	1372	c.399C>T	c.(397-399)GCC>GCT	p.A133A		NM_002428	NP_002419	P51511	MMP15_HUMAN	matrix metalloproteinase 15 preproprotein	133	Extracellular (Potential).				protein modification process|proteolysis	extracellular matrix|integral to plasma membrane	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|protein binding|zinc ion binding			central_nervous_system(2)|breast(1)	3						AGCGCTACGCCCTCACCGGGA	0.652000													10	53					0	0	0.000978159	0	0
CDH8	1006	broad.mit.edu	37	16	61687944	61687944	+	Missense_Mutation	SNP	A	T	T	rs143586940	by1000genomes	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:61687944A>T	uc002eog.1	-	12	2220	c.1968T>A	c.(1966-1968)GAT>GAA	p.D656E		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	656	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		CGTCTTCATCATCTTTGATAA	0.403000													14	62					0	0	0.000219431	0	0
C16orf48	84080	broad.mit.edu	37	16	67698988	67698988	+	Silent	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:67698988G>T	uc002etw.1	-	3	647	c.364C>A	c.(364-366)CGG>AGG	p.R122R	C16orf48_uc002etv.1_5'Flank|C16orf48_uc010cem.1_Silent_p.R122R|C16orf86_uc002etx.1_5'Flank|C16orf86_uc002ety.2_5'Flank|C16orf86_uc002etz.2_5'Flank	NM_032140	NP_115516	Q9H0I2	CP048_HUMAN	hypothetical protein LOC84080	122						microtubule cytoskeleton	protein binding				0		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCCTGCTCCCGGCTGCGCTCC	0.612000													16	101					8.60227e-14	5.12044e-13	0.000422831	1	0
EDC4	23644	broad.mit.edu	37	16	67914622	67914622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:67914622C>T	uc002eur.2	+	18	2426	c.2260C>T	c.(2260-2262)CGT>TGT	p.R754C	EDC4_uc010cer.2_Missense_Mutation_p.R373C|EDC4_uc002eus.2_Missense_Mutation_p.R484C|EDC4_uc002eut.1_5'Flank	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	754					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GGCCCTGTCCCGTGGTTTTGG	0.647000													17	126					0	0	0.00121646	0	0
PDPR	55066	broad.mit.edu	37	16	70190389	70190389	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:70190389C>T	uc002eyf.1	+	19	3204	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Silent_p.F649F|PDPR_uc002eyg.1_Silent_p.F416F|PDPR_uc002eyh.2_Silent_p.F94F|PDPR_uc010vls.1_Silent_p.F94F	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	749					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		GCATGGATTTCATTGGTCGCG	0.552000													12	82					0	0	0.000151284	0	0
CHST4	10164	broad.mit.edu	37	16	71570920	71570920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:71570920G>A	uc002fan.2	+	2	521	c.340G>A	c.(340-342)GAA>AAA	p.E114K	CHST4_uc002fao.2_Missense_Mutation_p.E114K	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	114	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						TGCCTACATGGAACCTGGTCC	0.567000													8	43					0	0	0.000673444	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76572111	76572111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:76572111C>T	uc002feu.1	+	21	3479	c.3094C>T	c.(3094-3096)CAT>TAT	p.H1032Y	CNTNAP4_uc002fev.1_Missense_Mutation_p.H896Y|CNTNAP4_uc010chb.1_Missense_Mutation_p.H959Y|CNTNAP4_uc002fex.1_Missense_Mutation_p.H1035Y	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	1032	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGCTTCATTTCATGGTGATAT	0.368000													14	43					0	0	0.000151284	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033081	82033081	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:82033081G>A	uc002fgu.2	-	3	945	c.817C>T	c.(817-819)CTG>TTG	p.L273L		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	273					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GTGTAGCCCAGGCCCTCAACC	0.522000													5	37					0	0	0.00116845	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84906696	84906696	+	Silent	SNP	G	A	A	rs143175101		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:84906696G>A	uc010voh.1	+	10	1307	c.1080G>A	c.(1078-1080)GTG>GTA	p.V360V	CRISPLD2_uc010vog.1_Intron|CRISPLD2_uc002fio.2_Silent_p.V359V|CRISPLD2_uc002fim.2_Silent_p.V360V|CRISPLD2_uc002fin.3_Silent_p.V360V	NM_031476	NP_113664	Q9H0B8	CRLD2_HUMAN	cysteine-rich secretory protein LCCL domain	360	LCCL 1.					extracellular region|transport vesicle					0						CCTTCTTCGTGAAGTCTGAGA	0.537000													7	54					0	0	0.000157383	0	0
SGSM2	9905	broad.mit.edu	37	17	2266311	2266311	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:2266311G>A	uc002fun.3	+	6	730	c.555G>A	c.(553-555)AAG>AAA	p.K185K	SGSM2_uc002fum.3_Silent_p.K185K|SGSM2_uc010vqw.1_Silent_p.K185K	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	185	RUN.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		AATACACTAAGCTCAAGACAG	0.617000													9	38					0	0	0.000978159	0	0
OR1G1	8390	broad.mit.edu	37	17	3030680	3030680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:3030680G>A	uc002fvc.1	-	1	166	c.166C>T	c.(166-168)CAT>TAT	p.H56Y		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	56	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGGGGGTATGGAGTTGAGTG	0.507000													9	51					0	0	0.000442599	0	0
TRPV3	162514	broad.mit.edu	37	17	3417291	3417291	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:3417291G>T	uc002fvt.1	-	18	2615	c.2293C>A	c.(2293-2295)CAA>AAA	p.Q765K	SPATA22_uc010vrg.1_5'Flank|TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.Q749K|TRPV3_uc010vri.1_Missense_Mutation_p.Q720K|TRPV3_uc010vrj.1_Missense_Mutation_p.Q749K|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.Q750K|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.Q766K	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	765	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	GAAGAATCTTGGATTTTGTTG	0.318000													9	48					1.12685e-05	6.62554e-05	0.000274275	1	0
ZFP3	124961	broad.mit.edu	37	17	4995975	4995975	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:4995975C>T	uc002gaq.2	+	2	1301	c.1176C>T	c.(1174-1176)CCC>CCT	p.P392P		NM_153018	NP_694563	Q96NJ6	ZFP3_HUMAN	zinc finger protein-3	392					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGAGAAACCCTATGAATGCT	0.453000													10	32					0	0	0.000673444	0	0
USP6	9098	broad.mit.edu	37	17	5039961	5039961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:5039961G>A	uc002gau.1	+	18	2921	c.691G>A	c.(691-693)GTC>ATC	p.V231I	USP6_uc002gav.1_Missense_Mutation_p.V231I|USP6_uc010ckz.1_5'UTR|uc002gbb.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	231	Rab-GAP TBC.				protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						TGGTGGGACAGTCCAGGGGCT	0.562000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								8	105					0	0	0.000274275	0	0
KDM6B	23135	broad.mit.edu	37	17	7748977	7748977	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:7748977C>T	uc002giw.1	+	4	481	c.105C>T	c.(103-105)CCC>CCT	p.P35P	KDM6B_uc002gix.2_5'Flank	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	35	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						CGCCTCATCCCCCTCCTCGTA	0.652000													11	73					0	0	0.000151284	0	0
ALOXE3	59344	broad.mit.edu	37	17	8015463	8015463	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:8015463C>T	uc010cnr.2	-	7	1102	c.732G>A	c.(730-732)AAG>AAA	p.K244K	ALOXE3_uc002gka.2_Silent_p.K400K|ALOXE3_uc010vuo.1_Silent_p.K376K|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	244	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						CATCCAGCTTCTTCCAGGAGC	0.542000													20	134					0	0	0.000878237	0	0
C17orf68	80169	broad.mit.edu	37	17	8141408	8141408	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:8141408G>A	uc002gkq.3	-	4	647	c.588C>T	c.(586-588)GGC>GGT	p.G196G	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	196					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						GCGTGACGGGGCCAGGACTGA	0.592000													6	36					0	0	0.00116845	0	0
MYH8	4626	broad.mit.edu	37	17	10304459	10304459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:10304459C>T	uc002gmm.2	-	25	3253	c.3158G>A	c.(3157-3159)AGA>AAA	p.R1053K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1053	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCGCTTTGCTCTTTCTAGATC	0.348000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				15	54					0	0	0.000219431	0	0
MYH4	4622	broad.mit.edu	37	17	10357143	10357143	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:10357143G>A	uc002gmn.2	-	23	2862	c.2751C>T	c.(2749-2751)ATC>ATT	p.I917I	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	917	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCTCAAGTTGGATTTTGGTTT	0.413000													28	167					0	0	0.00127121	0	0
MYH4	4622	broad.mit.edu	37	17	10358013	10358013	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:10358013C>T	uc002gmn.2	-	22	2661	c.2550G>A	c.(2548-2550)GAG>GAA	p.E850E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	850	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCATCTCCTTCTCTGTCTCTG	0.453000													17	74					0	0	0.000958276	0	0
MYH1	4619	broad.mit.edu	37	17	10404624	10404624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:10404624C>T	uc002gmo.2	-	27	3635	c.3541G>A	c.(3541-3543)GAC>AAC	p.D1181N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1181	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCCAGGTCCCTGCGCATT	0.597000													10	69					0	0	0.000442599	0	0
MYH2	4620	broad.mit.edu	37	17	10440749	10440749	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:10440749G>A	uc010coi.2	-	16	1826	c.1698C>T	c.(1696-1698)TTC>TTT	p.F566F	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.F566F|MYH2_uc010coj.2_Silent_p.F566F	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	566	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGGGCTTCTGGAAGTTGGCAG	0.527000													11	58					0	0	0.000673444	0	0
MYOCD	93649	broad.mit.edu	37	17	12655756	12655756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:12655756G>A	uc002gnn.2	+	10	1450	c.1151G>A	c.(1150-1152)CGA>CAA	p.R384Q	MYOCD_uc002gno.2_Missense_Mutation_p.R384Q|MYOCD_uc002gnp.1_Missense_Mutation_p.R288Q|MYOCD_uc002gnq.2_Missense_Mutation_p.R103Q	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	384	SAP.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		CAACAGCTTCGAATTCGGGGC	0.453000													10	41					0	0	0.000978159	0	0
MYO15A	51168	broad.mit.edu	37	17	18053778	18053778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:18053778G>A	uc010vxh.1	+	35	7586	c.7248G>A	c.(7246-7248)ATG>ATA	p.M2416I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	2416	Tail.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCTACCGCATGAAAGGGGGAG	0.602000													7	28					0	0	8.12818e-05	0	0
FLII	2314	broad.mit.edu	37	17	18150579	18150580	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:18150579_18150580GG>AA	uc002gsr.1	-	21	2630_2631	c.2579_2580CC>TT	c.(2578-2580)TCC>TTT	p.S860F	FLII_uc002gsq.1_Missense_Mutation_p.S731F|FLII_uc010cpy.1_Missense_Mutation_p.S849F|FLII_uc010vxn.1_Missense_Mutation_p.S829F|FLII_uc010vxo.1_Missense_Mutation_p.S805F|FLII_uc002gss.1_Missense_Mutation_p.S859F	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	860					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					TCACCTTCCCGGAGAGACCCGG	0.599000													9	49					0	0	6.4e-05	0	0
VTN	7448	broad.mit.edu	37	17	26696681	26696681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:26696681C>T	uc002hbc.2	-	3	525	c.376G>A	c.(376-378)GAG>AAG	p.E126K	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	126					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	GCGCCCACCTCAGGCGCAGGG	0.632000													7	18					0	0	8.12818e-05	0	0
SLC13A2	9058	broad.mit.edu	37	17	26817538	26817538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:26817538G>A	uc002hbh.2	+	3	365	c.298G>A	c.(298-300)GTG>ATG	p.V100M	SLC13A2_uc010wal.1_Missense_Mutation_p.V57M|SLC13A2_uc010wam.1_Missense_Mutation_p.V56M|SLC13A2_uc010wan.1_Missense_Mutation_p.V149M|SLC13A2_uc010wao.1_Missense_Mutation_p.V57M|SLC13A2_uc002hbi.2_Missense_Mutation_p.V29M	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	100	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	GGCCATCGCGGTGGAACACTG	0.627000													10	31					0	0	0.000978159	0	0
UNC45B	146862	broad.mit.edu	37	17	33495231	33495231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:33495231G>A	uc002hja.2	+	10	1400	c.1303G>A	c.(1303-1305)GAG>AAG	p.E435K	UNC45B_uc002hjb.2_Missense_Mutation_p.E435K|UNC45B_uc002hjc.2_Missense_Mutation_p.E435K|UNC45B_uc010cto.2_Missense_Mutation_p.E435K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	435					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CTCAGAGCGCGAGACGGACCA	0.597000													6	27					0	0	0.00116845	0	0
SLFN11	91607	broad.mit.edu	37	17	33680383	33680383	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:33680383C>T	uc010ctp.2	-	6	2336	c.1894G>A	c.(1894-1896)GAA>AAA	p.E632K	SLFN11_uc010ctq.2_Missense_Mutation_p.E632K|SLFN11_uc002hjh.3_Missense_Mutation_p.E632K|SLFN11_uc002hjg.3_Missense_Mutation_p.E632K|SLFN11_uc010ctr.2_Missense_Mutation_p.E632K	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	632						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGCTGGTTTTCACAAACGTAG	0.428000													9	40					0	0	0.000978159	0	0
SRCIN1	80725	broad.mit.edu	37	17	36700076	36700076	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:36700076C>T	uc002hqd.2	-	18	3624	c.3399G>A	c.(3397-3399)CGG>CGA	p.R1133R	SRCIN1_uc002hqf.1_Silent_p.R1005R|SRCIN1_uc002hqe.2_Silent_p.R1028R	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	1005					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GGGCCTGGATCCGCATGTACT	0.706000													4	16					0	0	0.00024832	0	0
SRCIN1	80725	broad.mit.edu	37	17	36708189	36708190	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:36708189_36708190CC>TT	uc002hqd.2	-	14	2884_2885	c.2659_2660GG>AA	c.(2659-2661)GGG>AAG	p.G887K	SRCIN1_uc002hqf.1_Missense_Mutation_p.G759K|SRCIN1_uc002hqe.2_Missense_Mutation_p.G741K|SRCIN1_uc002hqg.2_Missense_Mutation_p.G193K	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	759					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						GGGGTTGCCCCCCTTGGGGGTA	0.624000													7	34					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	17	37188291	37188291	+	RNA	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:37188291C>T	uc002hrd.1	+	1		c.2133C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		GATGTTAAACCGTCTCCAACC	0.498000													8	49					0	0	0.000442599	0	0
KRT32	3882	broad.mit.edu	37	17	39623149	39623149	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:39623149G>A	uc002hwr.2	-	1	490	c.429C>T	c.(427-429)TAC>TAT	p.Y143Y		NM_002278	NP_002269	Q14532	K1H2_HUMAN	keratin 32	143	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000812)				AATGAGACTGGTAGTCAGGAG	0.587000													7	25					0	0	0.000274275	0	0
VAT1	10493	broad.mit.edu	37	17	41174290	41174290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:41174290G>A	uc002icm.1	-	1	170	c.50C>T	c.(49-51)TCT>TTT	p.S17F	VAT1_uc010cyw.1_5'Flank|VAT1_uc010whk.1_Missense_Mutation_p.S17F|RND2_uc002icn.2_5'Flank	NM_006373	NP_006364	Q99536	VAT1_HUMAN	vesicle amine transport protein 1	17						cytoplasm|integral to membrane	oxidoreductase activity|zinc ion binding				0		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.156)		AGGCGGCGAAGAGGCGTCTTC	0.572000													4	12					0	0	0.000602214	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335162	42335162	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:42335162C>T	uc002igf.3	-	12	1445	c.1296G>A	c.(1294-1296)CGG>CGA	p.R432R	SLC4A1_uc002igg.3_Silent_p.R432R	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	432	Membrane (anion exchange).		R -> W (in ELO antigen).		bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCATCTGGTTCCGGGTCTTTT	0.587000													11	24					0	0	0.00136819	0	0
SLC4A1	6521	broad.mit.edu	37	17	42338085	42338085	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:42338085C>T	uc002igf.3	-	5	416	c.267G>A	c.(265-267)GGG>GGA	p.G89G	SLC4A1_uc002igg.3_Silent_p.G89G	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	89	Cytoplasmic.				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCCCATTCTCCCCCAGGTTCT	0.627000													6	21					0	0	0.00116845	0	0
WNT3	7473	broad.mit.edu	37	17	44845865	44845865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:44845865C>T	uc002ikv.2	-	4	1008	c.889G>A	c.(889-891)GAC>AAC	p.D297N		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	297					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			CAAGTCCGGTCCCTTGTGCCA	0.592000													16	84					0	0	0.00074312	0	0
HOXB1	3211	broad.mit.edu	37	17	46607031	46607031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:46607031C>T	uc002ink.1	-	2	790	c.784G>A	c.(784-786)GAG>AAG	p.E262K		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	262	Homeobox.					nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCTCTCGCTCGCGCTTCTTC	0.632000													19	86					0	0	0.00121646	0	0
HOXB3	3213	broad.mit.edu	37	17	46627737	46627737	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:46627737G>A	uc002inn.2	-	2	1655	c.1255C>T	c.(1255-1257)CAG>TAG	p.Q419*	HOXB3_uc010wlm.1_Nonsense_Mutation_p.Q346*|HOXB3_uc010dbf.2_Nonsense_Mutation_p.Q419*|HOXB3_uc010dbg.2_Nonsense_Mutation_p.Q419*|HOXB3_uc002ino.2_Nonsense_Mutation_p.Q419*|HOXB3_uc010wlk.1_Nonsense_Mutation_p.Q287*|HOXB3_uc010wll.1_Nonsense_Mutation_p.Q346*	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	419					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ATTCTACCCTGAGGAGGAGGC	0.612000											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	66					0	0	0.000978159	0	0
COL1A1	1277	broad.mit.edu	37	17	48268826	48268826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:48268826G>A	uc002iqm.2	-	32	2279	c.2153C>T	c.(2152-2154)CCC>CTC	p.P718L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	718	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CTGGCTACCGGGAGCTCCAGG	0.622000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						7	41					0	0	0.000442599	0	0
DGKE	8526	broad.mit.edu	37	17	54925305	54925305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:54925305C>T	uc002iur.2	+	5	947	c.767C>T	c.(766-768)CCT>CTT	p.P256L	DGKE_uc002ius.1_Missense_Mutation_p.P256L	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	256	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					ACTAAAACTCCTCCTATCAAA	0.388000													6	55					0	0	0.000157383	0	0
TEX14	56155	broad.mit.edu	37	17	56679173	56679173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:56679173C>T	uc010dcz.1	-	13	1808	c.1690G>A	c.(1690-1692)GAA>AAA	p.E564K	TEX14_uc002iwr.1_Missense_Mutation_p.E558K|TEX14_uc002iws.1_Missense_Mutation_p.E558K|TEX14_uc010dda.1_Missense_Mutation_p.E338K	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	564						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ATACCCATTTCCTTTAGTTCT	0.428000													5	57					0	0	0.00116845	0	0
PPM1E	22843	broad.mit.edu	37	17	57043131	57043131	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:57043131C>T	uc002iwx.2	+	3	787	c.660C>T	c.(658-660)TTC>TTT	p.F220F	PPM1E_uc010ddd.2_Intron	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	229					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			TGAAAGACTTCCCCCTCCGCA	0.473000													18	86					0	0	0.00074312	0	0
DHX40	79665	broad.mit.edu	37	17	57665345	57665345	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:57665345C>T	uc002ixn.1	+	12	1660	c.1513C>T	c.(1513-1515)CTG>TTG	p.L505L	DHX40_uc010woe.1_Silent_p.L428L|DHX40_uc010wof.1_Silent_p.L20L	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	505							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					AGCTGCTTCCCTGGATTGTGA	0.398000													23	90					0	0	0.000375601	0	0
DHX40P1	653645	broad.mit.edu	37	17	58079048	58079048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:58079048C>T	uc002iyf.2	-	5	395	c.160G>A	c.(160-162)GAG>AAG	p.E54K		NR_002924				Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene, mRNA (cDNA clone IMAGE:5170263).												0						TTTAAATGCTCCTTCCTATTA	0.353000													11	46					0	0	0.000978159	0	0
KCNH6	81033	broad.mit.edu	37	17	61607722	61607722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:61607722G>A	uc002jay.2	+	4	574	c.494G>A	c.(493-495)GGA>GAA	p.G165E	KCNH6_uc002jax.1_Missense_Mutation_p.G165E|KCNH6_uc010wpl.1_Missense_Mutation_p.G42E|KCNH6_uc010wpm.1_Missense_Mutation_p.G165E|KCNH6_uc002jaz.1_Missense_Mutation_p.G165E	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	165	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	AGGCCAGGCGGACCAGGGCCA	0.637000													12	46					0	0	0.00136819	0	0
PITPNC1	26207	broad.mit.edu	37	17	65688717	65688717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:65688717G>A	uc002jgc.2	+	9	1059	c.712G>A	c.(712-714)GAA>AAA	p.E238K	PITPNC1_uc002jgb.2_3'UTR	NM_012417	NP_036549	Q9UKF7	PITC1_HUMAN	phosphatidylinositol transfer protein,	238					signal transduction	cytoplasm	lipid binding|phosphatidylinositol transporter activity|protein binding			skin(1)	1	all_cancers(12;3.03e-10)		BRCA - Breast invasive adenocarcinoma(8;2.08e-08)|Colorectal(3;0.198)			CCGAGAATTTGAACGAGCCAC	0.453000													17	68					0	0	0.000958276	0	0
NOL11	25926	broad.mit.edu	37	17	65714118	65714119	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:65714118_65714119CC>AT	uc002jgd.1	+	1	58_59	c.55_56CC>AT	c.(55-57)CCT>ATT	p.P19I	NOL11_uc010wql.1_5'UTR|NOL11_uc010deu.1_5'Flank	NM_015462	NP_056277	Q9H8H0	NOL11_HUMAN	nucleolar protein 11	19						nucleolus					0	all_cancers(12;1.54e-10)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0518)|COAD - Colon adenocarcinoma(4;0.0977)|LUSC - Lung squamous cell carcinoma(166;0.24)			GAGCGCCGGGCCTGAAGGACTC	0.564000											OREG0024682	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	51					0	0	6.4e-05	0	0
ABCA8	10351	broad.mit.edu	37	17	66914290	66914290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:66914290G>A	uc002jhp.2	-	14	2004	c.1825C>T	c.(1825-1827)CCC>TCC	p.P609S	ABCA8_uc002jhq.2_Missense_Mutation_p.P649S|ABCA8_uc010wqq.1_Missense_Mutation_p.P649S|ABCA8_uc010wqr.1_Missense_Mutation_p.P588S|ABCA8_uc002jhr.2_Missense_Mutation_p.P649S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	609	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					CTTGAAAAGGGATCCAATCCA	0.453000													9	40					0	0	0.000442599	0	0
ABCA10	10349	broad.mit.edu	37	17	67218787	67218788	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:67218787_67218788GG>AA	uc010dfa.1	-	5	964_965	c.85_86CC>TT	c.(85-87)CCA>TTA	p.P29L	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfc.1_5'UTR	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	29					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					GTATTTTTTTGGAAGTTCTATA	0.337000													10	46					0	0	6.4e-05	0	0
SDK2	54549	broad.mit.edu	37	17	71418541	71418541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:71418541C>T	uc010dfm.2	-	15	1930	c.1930G>A	c.(1930-1932)GAC>AAC	p.D644N	SDK2_uc010dfn.2_Missense_Mutation_p.D323N	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	644	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion	integral to membrane				ovary(2)	2						GCTTTGGGGTCCACACTGGCC	0.577000													9	56					0	0	0.000978159	0	0
KIF19	124602	broad.mit.edu	37	17	72349661	72349661	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:72349661G>A	uc002jkm.3	+	17	2387	c.2249G>A	c.(2248-2250)TGG>TAG	p.W750*		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	750					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTGGGCAGCTGGATCAACTCT	0.617000													6	21					0	0	8.12818e-05	0	0
TSEN54	283989	broad.mit.edu	37	17	73515125	73515125	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:73515125C>A	uc002jof.1	+	6	551	c.518C>A	c.(517-519)CCA>CAA	p.P173Q	TSEN54_uc002joe.1_Silent_p.T170T	NM_207346	NP_997229	Q7Z6J9	SEN54_HUMAN	tRNA splicing endonuclease 54 homolog	173					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	nucleolus				ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGATTCCAACCAAGGTAAATC	0.458000													8	111					6.40141e-05	0.000375325	0.000978159	1	0
TRIM47	91107	broad.mit.edu	37	17	73870972	73870972	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:73870972G>A	uc002jpw.2	-	6	1536	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S	TRIM47_uc002jpv.2_Silent_p.S265S	NM_033452	NP_258411	Q96LD4	TRI47_HUMAN	tripartite motif-containing 47	503	B30.2/SPRY.					cytoplasm|nucleus	zinc ion binding			ovary(2)|prostate(1)|lung(1)|breast(1)	5			Epithelial(20;4.23e-06)|all cancers(21;5.24e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCTCTTGTGGGGAGAAGTCTT	0.652000													10	46					0	0	0.00136819	0	0
ENGASE	64772	broad.mit.edu	37	17	77081374	77081374	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr17:77081374C>T	uc002jwv.2	+	12	1658	c.1650C>T	c.(1648-1650)GCC>GCT	p.A550A	ENGASE_uc002jww.2_Silent_p.A255A	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	550						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CCAAGCTGGCCAGATGGGTGG	0.592000													6	31					0	0	0.000157383	0	0
YES1	7525	broad.mit.edu	37	18	756706	756706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:756706G>A	uc002kky.2	-	2	343	c.122C>T	c.(121-123)CCA>CTA	p.P41L	YES1_uc002kkz.2_Missense_Mutation_p.P41L	NM_005433	NP_005424	P07947	YES_HUMAN	viral oncogene yes-1 homolog 1	41					blood coagulation|leukocyte migration|regulation of vascular permeability|T cell costimulation	cytosol|plasma membrane	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|ovary(1)	3					Dasatinib(DB01254)	TGACGGACATGGTGACACTGT	0.463000													13	118					0	0	0.000566183	0	0
PTPRM	5797	broad.mit.edu	37	18	8379258	8379258	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:8379258C>T	uc002knn.3	+	26	4170	c.3667C>T	c.(3667-3669)CTG>TTG	p.L1223L	PTPRM_uc010dkv.2_Silent_p.L1236L|PTPRM_uc010wzl.1_Silent_p.L1010L	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1223	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				CATGGACATCCTGCCCCCAGA	0.597000													6	24					0	0	0.00116845	0	0
CEP192	55125	broad.mit.edu	37	18	13056570	13056570	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:13056570C>T	uc010xac.1	+	19	4061	c.3981C>T	c.(3979-3981)TCC>TCT	p.S1327S	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Silent_p.S852S|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_5'UTR|CEP192_uc002krs.1_Silent_p.S1068S	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1327										ovary(4)|pancreas(1)	5						GTACCTCTTCCCTCTGTAACC	0.458000													13	66					0	0	0.00136819	0	0
ESCO1	114799	broad.mit.edu	37	18	19153719	19153719	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:19153719A>G	uc002kth.1	-	4	2020	c.1086T>C	c.(1084-1086)TGT>TGC	p.C362C	ESCO1_uc002kti.1_RNA	NM_052911	NP_443143	Q5FWF5	ESCO1_HUMAN	establishment of cohesion 1 homolog 1	362					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding				0						AAAAACGATTACATTGCACAT	0.348000													20	98					0	0	0.000229342	0	0
LAMA3	3909	broad.mit.edu	37	18	21404447	21404447	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:21404447T>G	uc002kuq.2	+	21	2575	c.2489T>G	c.(2488-2490)GTC>GGC	p.V830G	LAMA3_uc002kur.2_Missense_Mutation_p.V830G	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	830	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTGTCACTGTCCCTGGAAAT	0.428000													3	65					0	0	6.4e-05	0	0
CDH2	1000	broad.mit.edu	37	18	25565542	25565542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:25565542G>A	uc002kwg.2	-	12	2384	c.1925C>T	c.(1924-1926)CCT>CTT	p.P642L	CDH2_uc010xbn.1_Missense_Mutation_p.P611L	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	642	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						TGGAGATAAAGGAAGATCAAA	0.368000													12	43					0	0	0.000219431	0	0
DSG4	147409	broad.mit.edu	37	18	28971161	28971161	+	Silent	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:28971161T>C	uc002kwq.2	+	7	940	c.805T>C	c.(805-807)TTA>CTA	p.L269L	DSG4_uc002kwr.2_Silent_p.L269L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	269	Cadherin 2.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTTCCCCACCTTAGAGAAAAC	0.398000													6	34					0	0	0.000442599	0	0
DSG3	1830	broad.mit.edu	37	18	29046573	29046573	+	Missense_Mutation	SNP	G	A	A	rs145720587	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:29046573G>A	uc002kws.2	+	11	1601	c.1492G>A	c.(1492-1494)GAA>AAA	p.E498K		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	498	Cadherin 4.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGCTGTCCTCGAAAAAGATGC	0.418000													12	87					0	0	0.000151284	0	0
KLHL14	57565	broad.mit.edu	37	18	30260436	30260436	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:30260436G>A	uc002kxm.1	-	6	1753	c.1365C>T	c.(1363-1365)TCC>TCT	p.S455S	KLHL14_uc010dmd.1_Missense_Mutation_p.P3L	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	455	Kelch 3.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GTGGCAAAGAGGACACATAGC	0.458000													5	49					0	0	0.00116845	0	0
ASXL3	80816	broad.mit.edu	37	18	31323920	31323920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:31323920C>T	uc010dmg.1	+	12	4163	c.4108C>T	c.(4108-4110)CCT>TCT	p.P1370S	ASXL3_uc002kxq.2_Missense_Mutation_p.P1077S	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CAACAGATTTCCTTCTGAGAA	0.498000											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	77					0	0	0.000437636	0	0
RIT2	6014	broad.mit.edu	37	18	40554088	40554088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:40554088C>T	uc002lav.2	-	3	358	c.185G>A	c.(184-186)AGG>AAG	p.R62K	RIT2_uc010dnf.2_Missense_Mutation_p.R62K	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	62					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						ATTGTCAATCCTGACCTGGGT	0.363000													4	12					0	0	0.00024832	0	0
SLC14A2	8170	broad.mit.edu	37	18	43221247	43221247	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:43221247C>T	uc010dnj.2	+	9	1386	c.1065C>T	c.(1063-1065)ATC>ATT	p.I355I	SLC14A2_uc002lbb.2_Silent_p.I355I|SLC14A2_uc002lbe.2_Silent_p.I355I	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	355	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TCTCCTGCATCGCCATCGGAG	0.552000													10	29					0	0	0.000442599	0	0
KIAA1632	57724	broad.mit.edu	37	18	43446814	43446814	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:43446814G>A	uc002lbm.2	-	38	6670	c.6570C>T	c.(6568-6570)CTC>CTT	p.L2190L	KIAA1632_uc010xcq.1_Silent_p.L744L|KIAA1632_uc010xcr.1_RNA|KIAA1632_uc010xcs.1_RNA|KIAA1632_uc002lbn.2_Silent_p.L1065L	NM_020964	NP_066015	Q9HCE0	EPG5_HUMAN	hypothetical protein LOC57724	2190					autophagy						0						ACACTTTTAGGAGCTTCATGA	0.438000													22	122					0	0	0.000295444	0	0
MYO5B	4645	broad.mit.edu	37	18	47421396	47421396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:47421396C>T	uc002leb.2	-	22	3248	c.2960G>A	c.(2959-2961)AGC>AAC	p.S987N	MYO5B_uc002lea.2_Missense_Mutation_p.S128N	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	987	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTGCGCAGGCTCTCCACCTC	0.612000													5	29					0	0	8.12818e-05	0	0
MAPK4	5596	broad.mit.edu	37	18	48190682	48190682	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:48190682G>A	uc002lev.2	+	2	1354	c.354G>A	c.(352-354)CAG>CAA	p.Q118Q	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.Q118Q	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	118	Protein kinase.				cell cycle		ATP binding|MAP kinase activity	p.Q118Q(1)		lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		TGCTGGAGCAGGGCACGCTGG	0.612000													6	29					0	0	0.00116845	0	0
DCC	1630	broad.mit.edu	37	18	50929236	50929236	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:50929236C>T	uc002lfe.1	+	19	3495	c.2908C>T	c.(2908-2910)CCC>TCC	p.P970S	DCC_uc010xdr.1_Missense_Mutation_p.P798S|DCC_uc010dpf.1_Missense_Mutation_p.P605S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	970	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TTGGCAGCCTCCCTTGGAAGC	0.522000													14	102					0	0	0.000566183	0	0
ALPK2	115701	broad.mit.edu	37	18	56246161	56246161	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:56246161T>A	uc002lhj.3	-	4	2061	c.1847A>T	c.(1846-1848)CAA>CTA	p.Q616L		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	616							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGTTGAAGTTTGAAGGGTTTT	0.468000											OREG0025011	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	78					0	0	0.000978159	0	0
MALT1	10892	broad.mit.edu	37	18	56402458	56402458	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:56402458A>T	uc002lhm.1	+	13	1758	c.1500A>T	c.(1498-1500)GAA>GAT	p.E500D	MALT1_uc002lhn.1_Missense_Mutation_p.E489D	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	500	Caspase-like.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						AAGCTTTTGAAATCCAGCATT	0.209000			T	BIRC3	MALT								14	49					0	0	0.000219431	0	0
ZNF516	9658	broad.mit.edu	37	18	74091449	74091449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr18:74091449G>A	uc010dqx.1	-	3	2856	c.2621C>T	c.(2620-2622)CCC>CTC	p.P874L	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	874					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CAGAGCGCAGGGACCTCCGGA	0.647000													20	93					0	0	0.000295444	0	0
MIER2	54531	broad.mit.edu	37	19	308851	308851	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:308851G>A	uc002lok.1	-	11	1068	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	353					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTGCTGGGCGAAGTAGTCGT	0.672000													7	35					0	0	8.12818e-05	0	0
SAFB2	9667	broad.mit.edu	37	19	5594006	5594006	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:5594006C>T	uc002mcd.2	-	15	2315	c.2103G>A	c.(2101-2103)GAG>GAA	p.E701E		NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	701	Arg-rich.|Interacts with SAFB1.|Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		TGCGCTCCTGCTCCTTCCTGC	0.741000													5	6					0	0	0.000602214	0	0
TMEM146	257062	broad.mit.edu	37	19	5748225	5748225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:5748225C>T	uc002mda.2	+	10	924	c.863C>T	c.(862-864)TCC>TTC	p.S288F	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	288	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTGTTTTCTTCCATTTTTGAA	0.507000													17	56					0	0	0.00074312	0	0
TUBB4	10382	broad.mit.edu	37	19	6501323	6501323	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:6501323G>A	uc002mfg.1	-	3	359	c.252C>T	c.(250-252)ATC>ATT	p.I84I	TUBB4_uc002mff.1_Silent_p.I12I	NM_006087	NP_006078	P04350	TBB4_HUMAN	tubulin, beta 4	84					'de novo' posttranslational protein folding|G2/M transition of mitotic cell cycle|microtubule-based movement|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(2)	2		Hepatocellular(1079;0.00213)|Renal(1328;0.0183)		Lung(535;3.23e-05)|STAD - Stomach adenocarcinoma(1328;8.24e-05)|GBM - Glioblastoma multiforme(1328;0.00839)|READ - Rectum adenocarcinoma(264;0.155)		CCGGCCGAAAGATCTGACCGA	0.577000													6	19					0	0	0.000157383	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665134	6665134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:6665134C>T	uc002mfk.1	-	5	908	c.526G>A	c.(526-528)GAG>AAG	p.E176K	TNFSF14_uc002mfj.1_Missense_Mutation_p.E140K	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	176	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						AGCTCCAGCTCCTCGGGGTAG	0.677000													9	40					0	0	0.000442599	0	0
KIAA1543	57662	broad.mit.edu	37	19	7676625	7676625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:7676625G>A	uc002mgv.3	+	11	1347	c.1246G>A	c.(1246-1248)GAC>AAC	p.D416N	KIAA1543_uc002mgu.3_Missense_Mutation_p.D443N|KIAA1543_uc002mgw.2_5'Flank	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	416					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CCTGGACAGCGACGTGGATGT	0.731000											OREG0007838	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=KIAA1543|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	5	14					0	0	0.000602214	0	0
FBN3	84467	broad.mit.edu	37	19	8154824	8154824	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:8154824G>A	uc002mjf.2	-	49	6225	c.6204C>T	c.(6202-6204)TGC>TGT	p.C2068C	FBN3_uc002mje.2_5'UTR	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2068	TB 8.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGCCAAAGGGGCAGAGCTCCT	0.637000													4	14					0	0	0.000602214	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8661990	8661990	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:8661990G>A	uc002mkj.1	-	8	1195	c.921C>T	c.(919-921)GCC>GCT	p.A307A	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	307	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GGGACTTCCCGGCATGGTGGG	0.582000													7	48					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	8994489	8994489	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:8994489G>A	uc002mkp.2	-	64	41607	c.41403C>T	c.(41401-41403)AAC>AAT	p.N13801N	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.N618N|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13803	Extracellular (Potential).|SEA 12.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATACCGCAGGTTAGTGATGG	0.507000													9	41					0	0	0.000274275	0	0
OR7G1	125962	broad.mit.edu	37	19	9226251	9226251	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:9226251G>A	uc002mks.1	-	1	189	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AGAGATTAAAGAGAAGGAAGT	0.483000													14	93					0	0	0.000151284	0	0
OR7G3	390883	broad.mit.edu	37	19	9237444	9237444	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:9237444G>A	uc010xkl.1	-	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001001958	NP_001001958	Q8NG95	OR7G3_HUMAN	olfactory receptor, family 7, subfamily G,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TAGAGAGGAGGAAGTACATGG	0.537000													6	38					0	0	8.12818e-05	0	0
ZNF426	79088	broad.mit.edu	37	19	9646888	9646888	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:9646888G>A	uc002mlq.2	-	3	285	c.21C>T	c.(19-21)TCC>TCT	p.S7S	ZNF426_uc010dws.2_5'UTR|uc002mlr.2_5'Flank|uc002mls.2_5'Flank	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	7					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCTTACCATGGGACAAATCAG	0.463000													11	32					0	0	0.000978159	0	0
COL5A3	50509	broad.mit.edu	37	19	10071562	10071562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:10071562G>A	uc002mmq.1	-	66	4942	c.4856C>T	c.(4855-4857)TCC>TTC	p.S1619F		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1619	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GTCCACGTAGGAGAACTGGTG	0.592000													13	52					0	0	0.000151284	0	0
SMARCA4	6597	broad.mit.edu	37	19	11113773	11113773	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:11113773C>T	uc002mqf.3	+	12	2165	c.1881C>T	c.(1879-1881)ATC>ATT	p.I627I	SMARCA4_uc010dxp.2_Silent_p.I627I|SMARCA4_uc010dxo.2_Silent_p.I627I|SMARCA4_uc002mqg.1_Silent_p.I627I|SMARCA4_uc010dxq.2_Silent_p.I627I|SMARCA4_uc010dxr.2_Silent_p.I627I|SMARCA4_uc002mqj.3_Silent_p.I627I|SMARCA4_uc010dxs.2_Silent_p.I627I	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	627					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GTGGGAAGATCCTCACAGGCA	0.597000			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				11	46					0	0	0.00136819	0	0
ACP5	54	broad.mit.edu	37	19	11687164	11687164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:11687164G>A	uc002msg.3	-	4	775	c.629C>T	c.(628-630)TCC>TTC	p.S210F	ACP5_uc002msh.3_Missense_Mutation_p.S210F|ACP5_uc002msi.3_Missense_Mutation_p.S210F|ACP5_uc002msj.3_Missense_Mutation_p.S210F	NM_001611	NP_001602	P13686	PPA5_HUMAN	acid phosphatase 5, tartrate resistant	210					water-soluble vitamin metabolic process	cytosol|integral to membrane|lysosome	acid phosphatase activity|ferric iron binding|ferrous iron binding			central_nervous_system(1)	1						CTCGGCTATGGACCACACGGG	0.647000													7	14					0	0	0.000157383	0	0
ACP5	54	broad.mit.edu	37	19	11688000	11688000	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:11688000C>A	uc002msg.3	-	2	279	c.133G>T	c.(133-135)GCC>TCC	p.A45S	ACP5_uc002msh.3_Missense_Mutation_p.A45S|ACP5_uc002msi.3_Missense_Mutation_p.A45S|ACP5_uc002msj.3_Missense_Mutation_p.A45S|ACP5_uc010dye.1_Missense_Mutation_p.A45S	NM_001611	NP_001602	P13686	PPA5_HUMAN	acid phosphatase 5, tartrate resistant	45				AR -> GP (in Ref. 1; AAA76849).	water-soluble vitamin metabolic process	cytosol|integral to membrane|lysosome	acid phosphatase activity|ferric iron binding|ferrous iron binding			central_nervous_system(1)	1						ATTTCCCGGGCCGTGTGGAAT	0.592000													8	27					1.12685e-05	6.62554e-05	0.000274275	1	0
CC2D1A	54862	broad.mit.edu	37	19	14031571	14031571	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:14031571C>T	uc002mxo.2	+	14	1776	c.1477C>T	c.(1477-1479)CAG>TAG	p.Q493*	CC2D1A_uc002mxp.2_Nonsense_Mutation_p.Q493*|CC2D1A_uc010dzh.2_Nonsense_Mutation_p.Q62*|CC2D1A_uc002mxq.1_Nonsense_Mutation_p.Q138*	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	493	Potential.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			AGCCCAGCAGCAGCTGGCCTT	0.647000													7	11					0	0	8.12818e-05	0	0
PRKACA	5566	broad.mit.edu	37	19	14213634	14213635	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:14213634_14213635GG>AA	uc002myc.2	-	4	529_530	c.329_330CC>TT	c.(328-330)TCC>TTT	p.S110F	PRKACA_uc002myb.2_Missense_Mutation_p.S102F|PRKACA_uc010xnm.1_Missense_Mutation_p.S52F|PRKACA_uc002myd.2_Missense_Mutation_p.S52F	NM_002730	NP_002721	P17612	KAPCA_HUMAN	cAMP-dependent protein kinase catalytic subunit	110	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding			lung(1)	1						CCACCTTGAAGGAGAACTCGAG	0.584000													7	52					0	0	6.4e-05	0	0
OR7C2	26658	broad.mit.edu	37	19	15052941	15052941	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:15052941T>A	uc010xoc.1	+	1	641	c.641T>A	c.(640-642)ATC>AAC	p.I214N		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					CTCTGTGGAATCCTATTCTCT	0.478000													10	57					0	0	0.000673444	0	0
CYP4F12	66002	broad.mit.edu	37	19	15807819	15807819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:15807819G>A	uc002nbl.2	+	13	1560	c.1499G>A	c.(1498-1500)AGG>AAG	p.R500K		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GAGCCCCGCAGGAAGCTGGAA	0.597000													10	37					0	0	0.000978159	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000293	16000293	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:16000293G>A	uc002nbs.1	-	7	908	c.858C>T	c.(856-858)TTC>TTT	p.F286F	CYP4F2_uc010xot.1_Silent_p.F137F|CYP4F2_uc010xou.1_Silent_p.F137F	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	286					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						TGGCTTGGAGGAAGTCATCAA	0.572000													10	46					0	0	0.000151284	0	0
OR10H4	126541	broad.mit.edu	37	19	16060702	16060702	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:16060702G>A	uc010xov.1	+	1	885	c.885G>A	c.(883-885)AGG>AGA	p.R295R		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TCAGCCTAAGGAACAAGGAGC	0.438000													12	45					0	0	0.000151284	0	0
ANO8	57719	broad.mit.edu	37	19	17434401	17434401	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:17434401G>A	uc002ngf.2	-	18	3783	c.3624C>T	c.(3622-3624)CCC>CCT	p.P1208P	ANO8_uc010eap.2_RNA	NM_020959	NP_066010	Q9HCE9	ANO8_HUMAN	anoctamin 8	1208	Pro-rich.|Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(3)	3						gggtctcgaggggatccgagg	0.433000													4	8					0	0	0.00024832	0	0
UNC13A	23025	broad.mit.edu	37	19	17752275	17752275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:17752275C>T	uc002nhd.2	-	21	2827	c.2827G>A	c.(2827-2829)GAT>AAT	p.D943N		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	855					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						GCTGTCTCATCGTAGTAAACC	0.562000													5	28					0	0	0.00116845	0	0
JAK3	3718	broad.mit.edu	37	19	17949183	17949183	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:17949183G>A	uc002nhn.3	-	11	1558	c.1458C>T	c.(1456-1458)ATC>ATT	p.I486I	JAK3_uc010ebh.2_RNA|JAK3_uc002nho.2_Silent_p.I486I|JAK3_uc010xpx.1_3'UTR	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	486					B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						TCTGGACCACGATCAGGTTGG	0.463000		2	Mis		acute megakaryocytic leukemia|								12	69					0	0	0.00136819	0	0
CILP2	148113	broad.mit.edu	37	19	19654824	19654824	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:19654824C>T	uc002nmv.3	+	8	1555	c.1470C>T	c.(1468-1470)TTC>TTT	p.F490F	CILP2_uc002nmw.3_Silent_p.F496F	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	490						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGCTACGCTTCGCCAGGATTC	0.667000													7	30					0	0	0.000274275	0	0
ZBTB32	27033	broad.mit.edu	37	19	36206302	36206302	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:36206302C>T	uc002oay.2	+	2	984	c.774C>T	c.(772-774)GGC>GGT	p.G258G	ZBTB32_uc002oaz.2_RNA|MLL4_uc010eei.2_5'Flank	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	258					DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGTGGGGGGCCAGCCTGCCC	0.677000													11	42					0	0	0.000219431	0	0
MLL4	9757	broad.mit.edu	37	19	36218841	36218841	+	Silent	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:36218841C>G	uc010eei.2	+	19	4452	c.4452C>G	c.(4450-4452)ACC>ACG	p.T1484T		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1484					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGGGAGAGACCCCGGACCGCC	0.632000													3	16					0	0	6.4e-05	0	0
PRODH2	58510	broad.mit.edu	37	19	36304054	36304054	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:36304054A>G	uc002obx.1	-	1	148	c.130T>C	c.(130-132)TGC>CGC	p.C44R		NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	44					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			cttttgtggcaattgcttcct	0.045000													9	59					0	0	0.00136819	0	0
WDR62	284403	broad.mit.edu	37	19	36590354	36590354	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:36590354C>T	uc002odc.2	+	22	2665	c.2574C>T	c.(2572-2574)TAC>TAT	p.Y858Y	WDR62_uc002odd.2_Silent_p.Y858Y	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	858					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			AGCGCAGCTACCAGCCCCACG	0.622000													7	21					0	0	0.000157383	0	0
ZNF569	148266	broad.mit.edu	37	19	37916859	37916859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:37916859G>A	uc002ogi.2	-	5	707	c.149C>T	c.(148-150)CCG>CTG	p.P50L	ZNF569_uc002ogh.2_Intron|ZNF569_uc002ogj.2_Missense_Mutation_p.P74L	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	50	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTTGGTGAACGGATAGCCTGT	0.443000													32	170					0	0	0.00178596	0	0
RYR1	6261	broad.mit.edu	37	19	38983130	38983130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:38983130G>A	uc002oit.2	+	38	6258	c.6128G>A	c.(6127-6129)GGA>GAA	p.G2043E	RYR1_uc002oiu.2_Missense_Mutation_p.G2043E	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2043	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCACTTCCAGGAATTCAGCTA	0.358000													12	35					0	0	0.00136819	0	0
CAPN12	147968	broad.mit.edu	37	19	39230712	39230713	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:39230712_39230713GG>AA	uc002ojd.1	-	5	1016_1017	c.707_708CC>TT	c.(706-708)TCC>TTT	p.S236F		NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	236	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CGCCCACGAGGGACTCCTTGGC	0.639000													5	23					0	0	6.4e-05	0	0
SPTBN4	57731	broad.mit.edu	37	19	41077962	41077962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:41077962G>A	uc002ony.2	+	34	7443	c.7357G>A	c.(7357-7359)GAA>AAA	p.E2453K	SPTBN4_uc002onz.2_Missense_Mutation_p.E2453K|SPTBN4_uc010egx.2_Missense_Mutation_p.E1196K	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2453	PH.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TAGTAAGGGGGAACTGGGCTT	0.597000													45	195					0	0	0.000781405	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442010	41442010	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:41442010G>A	uc010ehg.1	+	2	188	c.180G>A	c.(178-180)GAG>GAA	p.E60E	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.E60E|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						AGTTCCGAGAGAAATATGGGG	0.418000													5	18					0	0	0.000602214	0	0
ATP1A3	478	broad.mit.edu	37	19	42471437	42471437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:42471437C>T	uc002osg.2	-	22	3131	c.2977G>A	c.(2977-2979)GAA>AAA	p.E993K	ATP1A3_uc010xwf.1_Missense_Mutation_p.E1004K|ATP1A3_uc010xwg.1_Missense_Mutation_p.E963K|ATP1A3_uc010xwh.1_Missense_Mutation_p.E1006K|ATP1A3_uc002osh.2_Missense_Mutation_p.E993K	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	993	Helical; (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						TTGCGGATTTCGTCGTAGACG	0.652000													5	22					0	0	0.00116845	0	0
ZNF574	64763	broad.mit.edu	37	19	42583936	42583936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:42583936C>T	uc002osm.3	+	2	1347	c.1178C>T	c.(1177-1179)TCA>TTA	p.S393L	ZNF574_uc002osk.3_Missense_Mutation_p.S483L	NM_022752	NP_073589	Q6ZN55	ZN574_HUMAN	zinc finger protein 574	393	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.059)				CCTCTGCATTCATGTCCATGT	0.592000													11	65					0	0	0.000978159	0	0
MEGF8	1954	broad.mit.edu	37	19	42879760	42879760	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:42879760C>T	uc002otl.3	+	41	7805	c.7170C>T	c.(7168-7170)TCC>TCT	p.S2390S	MEGF8_uc002otm.3_Silent_p.S1998S|MEGF8_uc002otn.3_Silent_p.S51S	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2457	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				ACCCCACGTCCCAGACCAACT	0.657000													4	11					0	0	0.00024832	0	0
PSG4	5672	broad.mit.edu	37	19	43698625	43698625	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:43698625C>T	uc002ovy.2	-	5	1212	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Silent_p.G277G|PSG4_uc002ovz.2_Silent_p.G277G	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	370	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GCTGAAACTTCCCATTAATTG	0.458000													23	89					0	0	0.000586117	0	0
ZNF235	9310	broad.mit.edu	37	19	44792362	44792362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:44792362C>T	uc002oza.3	-	5	1329	c.1226G>A	c.(1225-1227)GGG>GAG	p.G409E	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.G405E|ZNF235_uc010xwx.1_Missense_Mutation_p.G323E	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	409	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				GAAGCCCTTCCCACACACCTC	0.438000													5	28					0	0	0.000602214	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45731010	45731010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:45731010C>T	uc002pay.1	-	5	355	c.314G>A	c.(313-315)CGA>CAA	p.R105Q		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	105										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		CTCATGGAATCGCTCCACACG	0.622000													9	25					0	0	0.00136819	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49355541	49355541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:49355541C>T	uc002pkx.2	-	13	1920	c.1369G>A	c.(1369-1371)GAG>AAG	p.E457K	PLEKHA4_uc002pkw.1_5'UTR|PLEKHA4_uc010eml.2_Missense_Mutation_p.E432K	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	457						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GTGCCCAGCTCCTGCTCCAGG	0.582000													8	34					0	0	0.000157383	0	0
FUZ	80199	broad.mit.edu	37	19	50315587	50315587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:50315587G>A	uc002ppq.1	-	3	344	c.239C>T	c.(238-240)ACC>ATC	p.T80I	FUZ_uc002ppr.1_5'UTR|FUZ_uc002pps.1_Intron|FUZ_uc002ppt.1_Intron|FUZ_uc002ppu.1_Intron|FUZ_uc002ppv.1_Missense_Mutation_p.T30I|FUZ_uc010ybd.1_Missense_Mutation_p.T80I	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	80					cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		AACAATGAGGGTGATGCTGTG	0.463000													9	23					0	0	0.000978159	0	0
KLK15	55554	broad.mit.edu	37	19	51330339	51330339	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:51330339G>A	uc002ptl.2	-	3	307	c.276C>T	c.(274-276)GTC>GTT	p.V92V	KLK15_uc002ptm.2_Silent_p.V92V|KLK15_uc002ptn.2_Silent_p.V92V|KLK15_uc002pto.2_Silent_p.V91V|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Silent_p.V91V|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	92	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		GGTGTGGAATGACCCGAGACG	0.662000													9	44					0	0	0.000442599	0	0
SIGLEC6	946	broad.mit.edu	37	19	52034553	52034553	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:52034553G>A	uc002pwy.2	-	2	450	c.288C>T	c.(286-288)CTC>CTT	p.L96L	SIGLEC6_uc002pwz.2_Silent_p.L96L|SIGLEC6_uc002pxa.2_Silent_p.L96L|SIGLEC6_uc010ydb.1_Silent_p.L49L|SIGLEC6_uc010ydc.1_Silent_p.L85L|SIGLEC6_uc010eoz.1_Silent_p.L85L|SIGLEC6_uc010epb.1_Silent_p.L49L|SIGLEC6_uc010epa.1_Silent_p.L85L	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	96	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		TGGGATCCCAGAGGAGGTGGA	0.547000													6	50					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	19	52196141	52196141	+	RNA	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:52196141C>A	uc002pxg.1	-	1		c.569G>T			uc002pxj.1_5'Flank|MIR125A_hsa-mir-125a|MI0000469_5'Flank|NCRNA00085_uc002pxk.3_5'Flank|NCRNA00085_uc002pxl.3_5'Flank					Homo sapiens cDNA FLJ44008 fis, clone TESTI4023942.																		GGGACGGGGCCCGGCGGGGAC	0.662000													9	19					0.000442599	0.00258052	0.000442599	1	0
FPR2	2358	broad.mit.edu	37	19	52272265	52272265	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:52272265C>T	uc002pxr.2	+	2	399	c.354C>T	c.(352-354)TTC>TTT	p.F118F	FPR2_uc002pxs.3_Silent_p.F118F|FPR2_uc010epf.2_Silent_p.F118F	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	118	Helical; Name=3; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGATTGGTTTCATTGCACTGG	0.507000													10	56					0	0	0.000673444	0	0
LILRB4	11006	broad.mit.edu	37	19	55175422	55175422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:55175422G>A	uc002qgp.2	+	3	643	c.281G>A	c.(280-282)GGG>GAG	p.G94E	LILRB4_uc002qgo.1_Missense_Mutation_p.G135E|LILRB4_uc002qgq.2_Missense_Mutation_p.G94E|LILRB4_uc010ers.1_Missense_Mutation_p.G7E|LILRB4_uc002qgr.2_Missense_Mutation_p.G135E|LILRB4_uc010ert.2_Missense_Mutation_p.G135E|LILRB4_uc010eru.2_Missense_Mutation_p.G123E	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	94	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GACTATGCAGGGAGATACCGC	0.577000													18	53					0	0	0.00074312	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55247512	55247512	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:55247512C>T	uc002qgu.1	+	8	1200	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	KIR2DL3_uc002qgv.2_Intron|KIR2DL3_uc002qgx.2_5'Flank|KIR2DL3_uc002qgy.2_5'Flank|KIR2DL3_uc010erw.1_5'Flank	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	394	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		AGAGAAAAATCACTCGCCCTT	0.507000													18	58					0	0	0.00047179	0	0
PPP1R12C	54776	broad.mit.edu	37	19	55614869	55614869	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:55614869C>T	uc002qix.2	-	4	655	c.639G>A	c.(637-639)CTG>CTA	p.L213L	PPP1R12C_uc010yfs.1_Silent_p.L139L|PPP1R12C_uc002qiy.2_Silent_p.L213L	NM_017607	NP_060077	Q9BZL4	PP12C_HUMAN	protein phosphatase 1, regulatory subunit 12C	213						cytoplasm				ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0449)		CGCCCCCATTCAGCCAGCACC	0.617000													4	12					0	0	0.00024832	0	0
ZNF628	89887	broad.mit.edu	37	19	55994798	55994798	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:55994798C>T	uc002qld.2	+	3	2791	c.2226C>T	c.(2224-2226)CCC>CCT	p.P742P	NAT14_uc002qle.1_5'Flank	NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	742						nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		TCCTGCTGCCCTCCTCCAGTG	0.731000													4	9					0	0	0.000602214	0	0
NLRP4	147945	broad.mit.edu	37	19	56369493	56369493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:56369493C>T	uc002qmd.3	+	3	1156	c.734C>T	c.(733-735)TCG>TTG	p.S245L	NLRP4_uc002qmf.2_Missense_Mutation_p.S170L|NLRP4_uc010etf.2_Missense_Mutation_p.S76L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	245	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAACCCGATTCGGATCTGTGT	0.567000													21	57					0	0	0.000229342	0	0
NLRP5	126206	broad.mit.edu	37	19	56539808	56539808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:56539808C>T	uc002qmj.2	+	7	2209	c.2209C>T	c.(2209-2211)CGG>TGG	p.R737W	NLRP5_uc002qmi.2_Missense_Mutation_p.R718W	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	737	LRR 2.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GCGGAAAATTCGGGTGGATGT	0.498000													28	120					0	0	0.000720815	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56733670	56733670	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr19:56733670C>T	uc002qmq.2	-	5	931	c.765G>A	c.(763-765)GGG>GGA	p.G255G	ZSCAN5A_uc010ygi.1_Silent_p.G138G|ZSCAN5A_uc002qmr.2_Silent_p.G255G|ZSCAN5A_uc002qms.1_Silent_p.G254G	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	255					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGGGGTCCTTCCCCTCCTTTG	0.488000													15	51					0	0	0.000308642	0	0
ADAM17	6868	broad.mit.edu	37	2	9630376	9630376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:9630376C>T	uc002qzu.2	-	19	2588	c.2405G>A	c.(2404-2406)AGA>AAA	p.R802K	IAH1_uc010yiz.1_Intron|ADAM17_uc010ewy.2_Missense_Mutation_p.R785K|ADAM17_uc010ewz.2_Missense_Mutation_p.R145K	NM_003183	NP_003174	P78536	ADA17_HUMAN	a disintegrin and metalloprotease domain 17	802	Cytoplasmic (Potential).				B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			lung(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		CTTTTCACTTCTGGTGACCGG	0.478000													9	35					0	0	0.000978159	0	0
KLF11	8462	broad.mit.edu	37	2	10188285	10188285	+	Missense_Mutation	SNP	C	T	T	rs142673414		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:10188285C>T	uc002raf.1	+	3	983	c.821C>T	c.(820-822)CCT>CTT	p.P274L	KLF11_uc010yjc.1_Missense_Mutation_p.P257L	NM_003597	NP_003588	O14901	KLF11_HUMAN	Kruppel-like factor 11	274					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		AAAACCACCCCTCTGATTTCT	0.532000													42	204					0	0	0.000437636	0	0
ODC1	4953	broad.mit.edu	37	2	10580951	10580951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:10580951C>T	uc010exg.1	-	12	1719	c.1285G>A	c.(1285-1287)GTA>ATA	p.V429I	ODC1_uc002ran.1_Missense_Mutation_p.V115I|ODC1_uc002rao.1_Missense_Mutation_p.V429I|ODC1_uc010yjd.1_Missense_Mutation_p.V299I	NM_002539	NP_002530	P11926	DCOR_HUMAN	ornithine decarboxylase 1	429					polyamine biosynthetic process|regulation of cellular amino acid metabolic process|response to virus	cytosol	ornithine decarboxylase activity|protein binding			ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.161)	Pyridoxal Phosphate(DB00114)|Spermine(DB00127)	TGTTCCTCTACTTCGGGTGGG	0.512000													6	66					0	0	0.000157383	0	0
ROCK2	9475	broad.mit.edu	37	2	11354554	11354554	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:11354554C>G	uc002rbd.1	-	17	2421	c.1972G>C	c.(1972-1974)GGC>CGC	p.G658R		NM_004850	NP_004841	O75116	ROCK2_HUMAN	Rho-associated, coiled-coil containing protein	658	Potential.|Interaction with PPP1R12A.				axon guidance|cytokinesis|intracellular signal transduction	cytosol|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|structural molecule activity			stomach(2)|skin(2)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.137)|OV - Ovarian serous cystadenocarcinoma(76;0.162)		AAGATTTTGCCGTTCTTTAAA	0.303000													3	55					0	0	6.4e-05	0	0
GREB1	9687	broad.mit.edu	37	2	11765422	11765423	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:11765422_11765423GG>TT	uc002rbk.1	+	24	4590_4591	c.4290_4291GG>TT	c.(4288-4293)CAGGGT>CATTGT	p.1430_1431QG>HC	GREB1_uc002rbp.1_Missense_Mutation_p.428_429QG>HC	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1430_1431						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CGCACTATCAGGGTATAAAGAG	0.480000													8	166					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21229223	21229223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:21229223G>A	uc002red.2	-	26	10645	c.10517C>T	c.(10516-10518)TCT>TTT	p.S3506F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3506	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATATTCCCGAGAAAGAACCGA	0.453000													41	254					0	0	0.00170553	0	0
CENPO	79172	broad.mit.edu	37	2	25016811	25016811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:25016811G>A	uc002rfo.1	+	2	212	c.23G>A	c.(22-24)CGT>CAT	p.R8H	CENPO_uc002rfn.2_Missense_Mutation_p.R8H|CENPO_uc002rfp.1_Intron|CENPO_uc002rfq.1_Missense_Mutation_p.R8H|C2orf79_uc002rfm.2_5'Flank	NM_024322	NP_077298	Q9BU64	CENPO_HUMAN	centromere protein O	8					cell division|CenH3-containing nucleosome assembly at centromere|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					AACCCTTTACGTCCAGATGGC	0.557000													18	67					0	0	0.00152264	0	0
EMILIN1	11117	broad.mit.edu	37	2	27306388	27306388	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:27306388T>G	uc002rii.3	+	4	2377	c.1949T>G	c.(1948-1950)GTT>GGT	p.V650G	EMILIN1_uc002rik.3_5'Flank	NM_007046	NP_008977	Q9Y6C2	EMIL1_HUMAN	elastin microfibril interfacer 1 precursor	650					cell adhesion	collagen				pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCTCTGAGGTTATTCTCAGC	0.632000													9	40					0	0	0.000274275	0	0
SPDYA	245711	broad.mit.edu	37	2	29072743	29072743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:29072743G>A	uc002rmj.2	+	8	1084	c.878G>A	c.(877-879)GGA>GAA	p.G293E	SPDYA_uc002rmk.2_Missense_Mutation_p.G293E|TRMT61B_uc002rmm.2_3'UTR|TRMT61B_uc002rmn.2_3'UTR|TRMT61B_uc010ezk.2_RNA	NM_182756	NP_877433	Q5MJ70	SPDYA_HUMAN	speedy homolog A isoform 1	293					G1/S transition of mitotic cell cycle|multicellular organismal development|positive regulation of cell proliferation|response to DNA damage stimulus	nucleus	protein kinase binding			upper_aerodigestive_tract(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TCAAATAAAGGAAAGAAAACT	0.289000													9	47					0	0	0.000442599	0	0
C2orf71	388939	broad.mit.edu	37	2	29296040	29296040	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:29296040T>C	uc002rmt.1	-	1	1088	c.1088A>G	c.(1087-1089)GAC>GGC	p.D363G		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	363					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GCCCAGCTTGTCCACCGACTG	0.612000													8	42					0	0	0.000274275	0	0
YPEL5	51646	broad.mit.edu	37	2	30379532	30379532	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:30379532C>T	uc002rna.3	+	4	576	c.15C>T	c.(13-15)TTC>TTT	p.F5F	YPEL5_uc002rnb.3_Silent_p.F5F|YPEL5_uc002rnc.3_Silent_p.F5F|YPEL5_uc002rmz.3_Silent_p.F5F|YPEL5_uc010ezn.2_Intron|YPEL5_uc002rnd.2_Silent_p.F5F	NM_001127401	NP_001120873	P62699	YPEL5_HUMAN	yippee-like 5	5							peptide-methionine-(S)-S-oxide reductase activity				0	Acute lymphoblastic leukemia(172;0.155)					GCAGAATTTTCCTTGATCATA	0.418000													12	95					0	0	0.000219431	0	0
TTC27	55622	broad.mit.edu	37	2	33036214	33036214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:33036214G>A	uc002rom.2	+	17	2353	c.2122G>A	c.(2122-2124)GAT>AAT	p.D708N	TTC27_uc010ymx.1_Missense_Mutation_p.D658N|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	708	HAT 3.						protein binding			central_nervous_system(1)	1						AGTGACAAATGATGGAGAAAT	0.458000													12	30					0	0	0.000219431	0	0
RASGRP3	25780	broad.mit.edu	37	2	33752258	33752258	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:33752258C>G	uc002rox.2	+	11	1489	c.862C>G	c.(862-864)CGC>GGC	p.R288G	RASGRP3_uc010ync.1_Missense_Mutation_p.R288G|RASGRP3_uc002roy.2_Missense_Mutation_p.R288G	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	288	Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					CTGCAATTACCGCAAGGCCTT	0.453000													3	45					0	0	0.00024832	0	0
MAP4K3	8491	broad.mit.edu	37	2	39499519	39499519	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:39499519G>A	uc002rro.2	-	26	1969	c.1878C>T	c.(1876-1878)TCC>TCT	p.S626S	MAP4K3_uc002rrp.2_Silent_p.S605S|MAP4K3_uc010yns.1_Silent_p.S179S	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	626	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				GTAAATTATGGGAATAAAGCT	0.318000													21	65					0	0	0.00152264	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366764	40366764	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:40366764G>A	uc002rrx.2	-	9	2346	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.F769F|SLC8A1_uc002rrz.2_Silent_p.F761F|SLC8A1_uc002rsa.2_Silent_p.F738F|SLC8A1_uc002rsd.3_Silent_p.F738F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	774	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCACGTAATCGAAACAGGAGG	0.502000													10	38					0	0	0.000978159	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808326	48808326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:48808326C>T	uc010yol.1	+	1	601	c.554C>T	c.(553-555)CCA>CTA	p.P185L	STON1_uc002rwo.3_Missense_Mutation_p.P185L|STON1_uc010fbm.2_Missense_Mutation_p.P185L|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.P185L|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.P185L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	185					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TTTTCAAGTCCATTTTGGAAA	0.433000													9	31					0	0	0.000274275	0	0
LHCGR	3973	broad.mit.edu	37	2	48936151	48936151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:48936151C>T	uc002rwu.3	-	8	686	c.616G>A	c.(616-618)GAA>AAA	p.E206K	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	206	Extracellular (Potential).|LRR 5.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TGTACGTTTTCCTTTAGCTCC	0.507000									Familial_Male-Limited_Precocious_Puberty				7	32					0	0	0.000157383	0	0
NRXN1	9378	broad.mit.edu	37	2	50724759	50724759	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:50724759T>C	uc010fbq.2	-	14	4188	c.2711A>G	c.(2710-2712)AAC>AGC	p.N904S	NRXN1_uc002rxb.3_Missense_Mutation_p.N536S|NRXN1_uc002rxe.3_Missense_Mutation_p.N864S|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			TCCAATGAAGTTGGAGGGGAC	0.428000													5	24					0	0	0.000602214	0	0
BCL11A	53335	broad.mit.edu	37	2	60688272	60688272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:60688272C>T	uc002sae.1	-	4	2003	c.1775G>A	c.(1774-1776)GGC>GAC	p.G592D	BCL11A_uc002sab.2_Missense_Mutation_p.G592D|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.G261D|BCL11A_uc010ypj.1_Missense_Mutation_p.G558D|BCL11A_uc002sad.1_Missense_Mutation_p.G440D|BCL11A_uc002saf.1_Missense_Mutation_p.G558D	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	592					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GTCCGACTCGCCGGCCACCGA	0.687000			T	IGH@	B-CLL								42	130					0	0	0.000781405	0	0
PEX13	5194	broad.mit.edu	37	2	61275798	61275798	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:61275798T>G	uc002sau.3	+	4	1188	c.1105T>G	c.(1105-1107)TCT>GCT	p.S369A		NM_002618	NP_002609	Q92968	PEX13_HUMAN	peroxisomal biogenesis factor 13	369	Cytoplasmic (Potential).				cerebral cortex cell migration|fatty acid alpha-oxidation|locomotory behavior|microtubule-based peroxisome localization|neuron migration|protein import into peroxisome matrix, docking|suckling behavior	integral to peroxisomal membrane|membrane fraction	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(5;2.05e-06)|Lung(5;3.13e-05)|Epithelial(17;0.114)			GGTTGCTGATTCTTTGGATGA	0.403000													14	56					0	0	0.000422831	0	0
KIAA1841	84542	broad.mit.edu	37	2	61345224	61345224	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:61345224C>T	uc002saw.3	+	20	2304	c.2001C>T	c.(1999-2001)GAC>GAT	p.D667D	KIAA1841_uc002sax.3_Silent_p.D521D|KIAA1841_uc002say.2_Silent_p.D667D	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	667											0			Epithelial(17;0.193)			GGGATCTGGACCGAGTCAAGT	0.358000													3	11					0	0	0.00024832	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188299	70188299	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:70188299G>A	uc002sfz.3	-	1	1099	c.522C>T	c.(520-522)GTC>GTT	p.V174V		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	174	Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						CAGCCCCAGGGACCCCAAAGG	0.592000													9	23					0	0	0.000442599	0	0
FIGLA	344018	broad.mit.edu	37	2	71012684	71012685	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:71012684_71012685GG>TT	uc002she.1	-	3	476_477	c.471_472CC>AA	c.(469-474)ACCCAA>ACAAAA	p.Q158K		NM_001004311	NP_001004311	Q6QHK4	FIGLA_HUMAN	factor in the germline alpha	158					multicellular organismal development|oocyte development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcription factor complex	DNA binding|transcription factor binding				0						CTGATATGTTGGGTGATGTTTC	0.485000													10	324					0	0	6.4e-05	0	0
ALMS1	7840	broad.mit.edu	37	2	73678771	73678771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:73678771C>T	uc002sje.1	+	10	5231	c.5120C>T	c.(5119-5121)TCA>TTA	p.S1707L	ALMS1_uc002sjf.1_Missense_Mutation_p.S1663L|ALMS1_uc002sjg.2_Missense_Mutation_p.S1093L|ALMS1_uc002sjh.1_Missense_Mutation_p.S1093L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1705	25.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						GAGACACCATCAGTATCCTCT	0.453000													11	42					0	0	0.000978159	0	0
SEMA4F	10505	broad.mit.edu	37	2	74902083	74902083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:74902083C>T	uc002sna.1	+	9	1181	c.1070C>T	c.(1069-1071)CCC>CTC	p.P357L	SEMA4F_uc010ffq.1_Missense_Mutation_p.P324L|SEMA4F_uc010ffr.1_5'UTR|SEMA4F_uc002snb.1_5'UTR|SEMA4F_uc002snc.1_Missense_Mutation_p.P202L	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	357	Sema.|Extracellular (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CTGAATGGTCCCTTCAGAGAA	0.532000											OREG0014721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	34					0	0	8.12818e-05	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88890083	88890084	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:88890083_88890084CC>TT	uc002stc.3	-	6	1244_1245	c.1042_1043GG>AA	c.(1042-1044)GGG>AAG	p.G348K		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	348	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						AATGACTTTCCCATCCTTAAGT	0.356000													27	187					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	2	90211769	90211769	+	RNA	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:90211769C>T	uc010fhm.2	+	25		c.3362C>T								Parts of antibodies, mostly variable regions.																		TTCTCTTCCTCCTGCTACTCT	0.517000													9	55					0	0	0.000673444	0	0
ASTL	431705	broad.mit.edu	37	2	96803328	96803328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:96803328G>A	uc010yui.1	-	2	167	c.167C>T	c.(166-168)CCT>CTT	p.P56L		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	56					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GTTAATTGCAGGAATGTCCTT	0.597000													10	74					0	0	0.000673444	0	0
IL18R1	8809	broad.mit.edu	37	2	103006665	103006665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:103006665G>A	uc002tbw.3	+	9	1249	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	IL18R1_uc010ywc.1_Missense_Mutation_p.E366K|IL18R1_uc010ywd.1_Missense_Mutation_p.E211K|IL18R1_uc010fiy.2_Missense_Mutation_p.E367K	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	367	Cytoplasmic (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						GAGAAGAGATGAAACATTAAC	0.333000													11	52					0	0	0.000978159	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459497	107459497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:107459497C>T	uc002tdq.2	-	2	1056	c.937G>A	c.(937-939)GAA>AAA	p.E313K	ST6GAL2_uc002tdr.2_Missense_Mutation_p.E313K|ST6GAL2_uc002tds.3_Missense_Mutation_p.E313K	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	313	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTACCTATTTCCTCGCCCAAG	0.667000													5	14					0	0	0.00116845	0	0
RGPD4	285190	broad.mit.edu	37	2	108488584	108488584	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:108488584A>T	uc010ywk.1	+	20	4206	c.4124A>T	c.(4123-4125)AAA>ATA	p.K1375I	RGPD4_uc002tdu.2_Missense_Mutation_p.K562I|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1375	RanBD1 2.				intracellular transport		binding			skin(2)	2						GGTCAATGGAAAGAAAGGGGC	0.353000													26	104					0	0	0.000491102	0	0
RGPD4	285190	broad.mit.edu	37	2	108496444	108496444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:108496444G>A	uc010ywk.1	+	21	5027	c.4945G>A	c.(4945-4947)GAA>AAA	p.E1649K	RGPD4_uc002tdu.2_Missense_Mutation_p.E836K|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1649					intracellular transport		binding			skin(2)	2						ATGGCATGCTGAATTTACCAA	0.378000													7	44					0	0	0.000566183	0	0
GCC2	9648	broad.mit.edu	37	2	109116207	109116207	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:109116207C>T	uc002tec.2	+	22	5135	c.4981C>T	c.(4981-4983)CAA>TAA	p.Q1661*	GCC2_uc002ted.2_Nonsense_Mutation_p.Q1560*	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1661	Mediates interaction with RAB9A.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TGCGGTTGCTCAAGGTGGGTA	0.408000													15	129					0	0	0.000295444	0	0
RANBP2	5903	broad.mit.edu	37	2	109384422	109384422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:109384422C>T	uc002tem.3	+	20	7553	c.7427C>T	c.(7426-7428)ACA>ATA	p.T2476I		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2476					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GAAGAAACCACAAGAGAGAGG	0.423000													39	171					0	0	0.000781405	0	0
EDAR	10913	broad.mit.edu	37	2	109524406	109524406	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:109524406G>A	uc002teq.3	-	10	1304	c.873C>T	c.(871-873)GCC>GCT	p.A291A	EDAR_uc010fjn.2_Silent_p.A323A|EDAR_uc010yws.1_Silent_p.A323A	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	291	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GCTTGTCAGGGGCGGGCTCCT	0.617000													5	18					0	0	0.00116845	0	0
PSD4	23550	broad.mit.edu	37	2	113943574	113943574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:113943574G>A	uc002tjc.2	+	5	1553	c.1370G>A	c.(1369-1371)GGT>GAT	p.G457D	PSD4_uc002tjd.2_Missense_Mutation_p.G78D|PSD4_uc002tje.2_Missense_Mutation_p.G428D|PSD4_uc002tjf.2_Missense_Mutation_p.G78D	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	457					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGAGGCCCTGGTCCCAGGCCC	0.622000													6	28					0	0	8.12818e-05	0	0
STEAP3	55240	broad.mit.edu	37	2	120003228	120003228	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:120003228C>T	uc002tlp.2	+	3	313	c.156C>T	c.(154-156)TTC>TTT	p.F52F	STEAP3_uc002tlq.2_Silent_p.F62F|STEAP3_uc002tlr.2_Silent_p.F52F|STEAP3_uc010fle.2_Silent_p.F52F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	52	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						GCTCTGGCTTCAAAGTGGTGG	0.652000													9	28					0	0	0.000673444	0	0
PCDP1	200373	broad.mit.edu	37	2	120383201	120383201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:120383201C>T	uc002tmb.2	+	16	1687	c.595C>T	c.(595-597)CGT>TGT	p.R199C	PCDP1_uc010yyq.1_Missense_Mutation_p.R329C	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	485						cilium	calmodulin binding				0	Colorectal(110;0.196)					GAGTGCTGTTCGTGAAATGGA	0.403000													5	16					0	0	0.00116845	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521715	125521715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:125521715G>A	uc002tno.2	+	16	2885	c.2521G>A	c.(2521-2523)GAA>AAA	p.E841K	CNTNAP5_uc010flu.2_Missense_Mutation_p.E842K	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	841	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CATTCGACTCGAAATAAGCTG	0.279000													11	30					0	0	0.000151284	0	0
YSK4	80122	broad.mit.edu	37	2	135756509	135756509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:135756509C>T	uc002tue.1	-	5	404	c.373G>A	c.(373-375)GAA>AAA	p.E125K	YSK4_uc010fne.1_Missense_Mutation_p.E97K|YSK4_uc002tuf.1_Missense_Mutation_p.E125K|YSK4_uc010fnc.1_Missense_Mutation_p.E125K|YSK4_uc010fnd.1_Intron|YSK4_uc010zbg.1_Missense_Mutation_p.E125K|YSK4_uc002tui.3_Missense_Mutation_p.E142K	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	125							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		GTTTCTATTTCATTTGGATGA	0.443000													6	38					0	0	0.00116845	0	0
SPOPL	339745	broad.mit.edu	37	2	139308617	139308617	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:139308617A>T	uc002tvh.2	+	4	745	c.345A>T	c.(343-345)AAA>AAT	p.K115N		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	115	MATH.					nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		AAGAAACAAAAGCAATGGGTA	0.353000													6	48					0	0	8.12818e-05	0	0
LRP1B	53353	broad.mit.edu	37	2	141607863	141607863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:141607863C>T	uc002tvj.1	-	29	5719	c.4747G>A	c.(4747-4749)GAA>AAA	p.E1583K	LRP1B_uc010fnl.1_Missense_Mutation_p.E765K	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1583	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTCTGATTTCAGAACGTCTT	0.333000										TSP Lung(27;0.18)			9	22					0	0	0.000442599	0	0
NEB	4703	broad.mit.edu	37	2	152369315	152369315	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:152369315T>C	uc010fnx.2	-	133	18366	c.18175A>G	c.(18175-18177)AAT>GAT	p.N6059D	NEB_uc002txr.2_Missense_Mutation_p.N2482D|NEB_uc002txt.3_Missense_Mutation_p.N564D	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6059					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAAGTGAAATTGGCTTTCTCC	0.393000													7	29					0	0	0.000274275	0	0
NEB	4703	broad.mit.edu	37	2	152373030	152373030	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:152373030C>T	uc010fnx.2	-	129	17936	c.17745G>A	c.(17743-17745)CTG>CTA	p.L5915L	NEB_uc002txr.2_Silent_p.L2338L|NEB_uc002txt.3_Silent_p.L420L	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5915	Nebulin 162.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTTCAAAGTCCAGCATGGGTT	0.428000													3	11					0	0	0.00116845	0	0
NEB	4703	broad.mit.edu	37	2	152404824	152404824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:152404824C>T	uc010fnx.2	-	103	15243	c.15052G>A	c.(15052-15054)GAG>AAG	p.E5018K	NEB_uc002txr.2_Missense_Mutation_p.E1441K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5018	Nebulin 137.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCAGGTACCTCGCTGGTAACA	0.403000													6	30					0	0	8.12818e-05	0	0
NEB	4703	broad.mit.edu	37	2	152506845	152506845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:152506845G>A	uc010fnx.2	-	54	7467	c.7276C>T	c.(7276-7278)CCC>TCC	p.P2426S		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2426	Nebulin 65.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GAACCCAAGGGACTCCATCCT	0.458000													7	42					0	0	0.000157383	0	0
ACVR1	90	broad.mit.edu	37	2	158637084	158637084	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:158637084G>A	uc002tzm.3	-	5	435	c.96C>T	c.(94-96)CTC>CTT	p.L32L	ACVR1_uc002tzn.3_Silent_p.L32L|ACVR1_uc010fog.2_Silent_p.L32L	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	32	Extracellular (Potential).				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	CACACATGTAGAGTTTGGGGT	0.468000													6	31					0	0	8.12818e-05	0	0
LY75	4065	broad.mit.edu	37	2	160676288	160676288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:160676288C>T	uc002ubc.3	-	29	4171	c.4102G>A	c.(4102-4104)GAA>AAA	p.E1368K	LY75_uc002ubb.3_Missense_Mutation_p.E1368K|LY75_uc010fos.2_Missense_Mutation_p.E1368K	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1368	Extracellular (Potential).|C-type lectin 8.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		TAAACTGCTTCTTCAATAACT	0.343000													6	78					0	0	0.000673444	0	0
SCN1A	6323	broad.mit.edu	37	2	166930023	166930023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:166930023G>A	uc010zcz.1	-	1	127	c.109C>T	c.(109-111)CCC>TCC	p.P37S		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	37						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TCTGGTTTGGGATTCTTTGCC	0.438000													23	140					0	0	0.000586117	0	0
SCN9A	6335	broad.mit.edu	37	2	167142981	167142981	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:167142981G>A	uc010fpl.2	-	11	1808	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	uc002udp.2_Intron|SCN9A_uc002udr.1_Silent_p.S360S|SCN9A_uc002uds.1_Silent_p.S360S|SCN9A_uc002udt.1_Silent_p.S360S	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	489						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCTCTCCACTGGAGAGCTTCT	0.423000													14	59					0	0	0.000151284	0	0
KLHL23	151230	broad.mit.edu	37	2	170591665	170591666	+	Missense_Mutation	DNP	TT	GC	GC			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:170591665_170591666TT>GC	uc002ufh.1	+	4	479_480	c.141_142TT>GC	c.(139-144)ATTTTC>ATGCTC	p.47_48IF>ML	KLHL23_uc002ufi.1_Missense_Mutation_p.47_48IF>ML	NM_144711	NP_653312	Q8NBE8	KLH23_HUMAN	kelch-like 23	47_48	BTB.										0						CAGGCATAATTTTCCATTGTCA	0.347000													24	141					0	0	6.4e-05	0	0
OSBPL6	114880	broad.mit.edu	37	2	179255912	179255912	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179255912T>G	uc002ulx.2	+	22	2792	c.2414T>G	c.(2413-2415)GTG>GGG	p.V805G	OSBPL6_uc002uly.2_Missense_Mutation_p.V830G|OSBPL6_uc010zfe.1_Missense_Mutation_p.V774G|OSBPL6_uc002ulz.2_Missense_Mutation_p.V769G|OSBPL6_uc002uma.2_Missense_Mutation_p.V809G	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	805					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TACTGTGGTGTGGCCCCCTCT	0.527000													7	43					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179430280	179430280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179430280C>T	uc010zfg.1	-	275	73099	c.72875G>A	c.(72874-72876)GGA>GAA	p.G24292E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17987E|TTN_uc010zfi.1_Missense_Mutation_p.G17920E|TTN_uc010zfj.1_Missense_Mutation_p.G17795E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25219							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCGCTTTTTCCTTTCTCATT	0.403000													9	46					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179558664	179558664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179558664C>T	uc010zfg.1	-	115	27990	c.27766G>A	c.(27766-27768)GAG>AAG	p.E9256K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5917K|TTN_uc010fre.1_Missense_Mutation_p.E367K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10183							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGACACCTCCTCCTCTGTG	0.393000													4	16					0	0	0.00024832	0	0
TTN	7273	broad.mit.edu	37	2	179604105	179604105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179604105C>T	uc010zfh.1	-	46	13566	c.13342G>A	c.(13342-13344)GAA>AAA	p.E4448K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4381K|TTN_uc010zfj.1_Missense_Mutation_p.E4256K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATCACCTTCCTCAGAAACA	0.413000													4	25					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179647604	179647604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179647604C>T	uc010zfg.1	-	18	3253	c.3029G>A	c.(3028-3030)AGC>AAC	p.S1010N	TTN_uc010zfh.1_Missense_Mutation_p.S964N|TTN_uc010zfi.1_Missense_Mutation_p.S964N|TTN_uc010zfj.1_Missense_Mutation_p.S964N|TTN_uc002unb.2_Missense_Mutation_p.S1010N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1010							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATCGCCCGCTGTCTTCCGC	0.498000													8	19					0	0	0.000274275	0	0
CCDC141	285025	broad.mit.edu	37	2	179720257	179720257	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:179720257C>T	uc002unf.1	-	9	1209	c.1152G>A	c.(1150-1152)AGG>AGA	p.R384R		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	384	Potential.						protein binding	p.R384R(1)		ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTTCCATTTTCCTTTTCAAAG	0.274000													4	35					0	0	0.00024832	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800571	185800571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:185800571G>A	uc002uph.2	+	4	1042	c.448G>A	c.(448-450)GAA>AAA	p.E150K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	150						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAACTGTAATGAAATTTCCCA	0.373000													5	42					0	0	0.00116845	0	0
DNAH7	56171	broad.mit.edu	37	2	196723507	196723507	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:196723507C>T	uc002utj.3	-	43	7859	c.7758G>A	c.(7756-7758)AAG>AAA	p.K2586K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2586	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTTCATATCTCTTTTTCATTT	0.373000													6	55					0	0	0.00116845	0	0
HECW2	57520	broad.mit.edu	37	2	197297889	197297889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:197297889C>T	uc002utm.1	-	2	442	c.259G>A	c.(259-261)GAC>AAC	p.D87N		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	87					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TCACTGGGGTCCACCTCCTCT	0.463000													5	36					0	0	8.12818e-05	0	0
AOX1	316	broad.mit.edu	37	2	201469527	201469527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:201469527C>T	uc002uvx.2	+	9	879	c.778C>T	c.(778-780)CCC>TCC	p.P260S		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	260	FAD-binding PCMH-type.				inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	ATTCAAGTATCCCCAGGCTCC	0.488000													6	21					0	0	8.12818e-05	0	0
NBEAL1	65065	broad.mit.edu	37	2	204066299	204066300	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:204066299_204066300CG>AT	uc002uzt.3	+	49	7518_7519	c.7185_7186CG>AT	c.(7183-7188)CCCGGG>CCATGG	p.G2396W	NBEAL1_uc002uzs.3_Missense_Mutation_p.G1037W	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	2396							binding			ovary(1)|skin(1)	2						CTTTTGCTCCCGGGCTAGAGAT	0.376000													14	379					0	0	6.4e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207162009	207162010	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:207162009_207162010AG>GA	uc002vbp.2	+	4	350_351	c.100_101AG>GA	c.(100-102)AGT>GAT	p.S34D		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	34	DBF4-type.						nucleic acid binding|zinc ion binding			ovary(3)	3						GACCAGACAGAGTAGACGTCAA	0.327000													8	41					0	0	6.4e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174927	207174927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:207174927C>T	uc002vbp.2	+	5	5925	c.5675C>T	c.(5674-5676)GCT>GTT	p.A1892V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1892							nucleic acid binding|zinc ion binding			ovary(3)	3						CCAACTCAAGCTGTGTCAGAG	0.443000													8	27					0	0	0.000274275	0	0
SPEG	10290	broad.mit.edu	37	2	220315923	220315923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:220315923C>T	uc010fwg.2	+	5	2179	c.2179C>T	c.(2179-2181)CCC>TCC	p.P727S	SPEG_uc002vlm.2_RNA|SPEG_uc010fwh.1_5'UTR|SPEG_uc002vln.1_5'UTR|SPEG_uc002vlp.1_5'UTR	NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	727	Ig-like 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GTTTGAGATCCCCCTGCAGAA	0.602000													13	49					0	0	0.000151284	0	0
ACCN4	55515	broad.mit.edu	37	2	220396802	220396802	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:220396802C>T	uc002vma.2	+	3	1202	c.1188C>T	c.(1186-1188)TTC>TTT	p.F396F	ACCN4_uc010fwi.1_Silent_p.F396F|ACCN4_uc010fwj.1_Silent_p.F396F|ACCN4_uc002vly.1_Silent_p.F396F|ACCN4_uc002vlz.2_Silent_p.F396F|ACCN4_uc002vmb.2_Silent_p.F50F	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	396	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		AGCTGGGGTTCGGGGTGTCCC	0.622000													12	54					0	0	0.000151284	0	0
MOGAT1	116255	broad.mit.edu	37	2	223559127	223559127	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:223559127G>A	uc010fws.1	+	4	573	c.525G>A	c.(523-525)AAG>AAA	p.K175K	MOGAT1_uc010fwt.1_Silent_p.K135K	NM_058165	NP_477513	Q96PD6	MOGT1_HUMAN	monoacylglycerol O-acyltransferase 1	175					glycerol metabolic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity			breast(1)	1		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;2.06e-07)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0105)		TGGTAAGCAAGGAGGGAGGTG	0.418000													13	31					0	0	0.000219431	0	0
NMUR1	10316	broad.mit.edu	37	2	232389792	232389792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:232389792C>T	uc002vry.3	-	3	1353	c.1243G>A	c.(1243-1245)GAT>AAT	p.D415N		NM_006056	NP_006047	Q9HB89	NMUR1_HUMAN	neuromedin U receptor 1	415	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|calcium ion transport|calcium-mediated signaling|chloride transport|smooth muscle contraction	integral to plasma membrane|membrane fraction	neuromedin U receptor activity			lung(3)|central_nervous_system(1)|pancreas(1)	5		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;8.37e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		TCTGGGCCATCGTTCCCAGCC	0.652000													6	29					0	0	0.00116845	0	0
COL6A3	1293	broad.mit.edu	37	2	238253407	238253407	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:238253407G>A	uc002vwl.2	-	36	7539	c.7254C>T	c.(7252-7254)TTC>TTT	p.F2418F	COL6A3_uc002vwo.2_Silent_p.F2212F|COL6A3_uc010znj.1_Silent_p.F1811F|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Silent_p.F239F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2418	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GCATCCGGCCGAAAGTGTCTT	0.567000													14	65					0	0	0.000219431	0	0
ILKAP	80895	broad.mit.edu	37	2	239092683	239092683	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:239092683A>G	uc002vxv.2	-	7	734	c.604T>C	c.(604-606)TTC>CTC	p.F202L	ILKAP_uc010zns.1_Missense_Mutation_p.F134L|ILKAP_uc002vxw.2_Missense_Mutation_p.F82L|ILKAP_uc010znt.1_Missense_Mutation_p.F82L	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	202	PP2C-like.					cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		TGTTTAAGGAACTCTTCATCA	0.393000													13	88					0	0	0.000151284	0	0
GPR35	2859	broad.mit.edu	37	2	241569699	241569699	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:241569699C>T	uc002vzs.1	+	1	905	c.330C>T	c.(328-330)ATC>ATT	p.I110I	GPR35_uc010fzh.1_Silent_p.I141I|GPR35_uc010fzi.1_Silent_p.I141I	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	110	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		TCACGGCCATCGCCGTGGACC	0.697000													7	20					0	0	0.000274275	0	0
AQP12B	653437	broad.mit.edu	37	2	241622137	241622137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:241622137C>T	uc010fzj.2	-	1	181	c.118G>A	c.(118-120)GAG>AAG	p.E40K	AQP12B_uc002vzt.2_Intron	NM_001102467	NP_001095937	A6NM10	AQ12B_HUMAN	aquaporin 12B	40						integral to membrane	transporter activity				0		all_epithelial(40;1.71e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		CCCACCGCCTCCCGGGCGAAG	0.682000													7	16					0	0	8.12818e-05	0	0
FARP2	9855	broad.mit.edu	37	2	242373582	242373582	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr2:242373582C>A	uc002wbi.1	+	10	994	c.877C>A	c.(877-879)CAG>AAG	p.Q293K	FARP2_uc010zoq.1_Missense_Mutation_p.Q293K|FARP2_uc010zor.1_Missense_Mutation_p.Q293K	NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	293	FERM.				axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		GGGACCTTACCAGGACACATT	0.363000													6	106					0.000442599	0.00258052	0.000442599	1	0
SIRPB1	10326	broad.mit.edu	37	20	1551704	1551704	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:1551704G>A	uc010gai.2	-	4	930	c.831C>T	c.(829-831)TTC>TTT	p.F277F	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	277	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CCCGGGGGTAGAAATTGCTCA	0.537000													5	27					0	0	0.00116845	0	0
NOP56	10528	broad.mit.edu	37	20	2636275	2636275	+	Silent	SNP	C	T	T	rs147425088	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:2636275C>T	uc002wgh.2	+	7	845	c.792C>T	c.(790-792)ATC>ATT	p.I264I	NOP56_uc010zpy.1_RNA|NOP56_uc002wgi.2_Silent_p.I98I|NOP56_uc002wgm.1_Silent_p.I11I|SNORD86_uc010gaq.1_5'Flank|SNORD56_uc010gar.2_5'Flank|SNORD57_uc002wgo.1_5'Flank	NM_006392	NP_006383	O00567	NOP56_HUMAN	nucleolar protein 5A	264	Nop.				rRNA processing	box C/D snoRNP complex|pre-snoRNP complex	protein binding|snoRNA binding			ovary(1)|pancreas(1)	2						TGATAAACATCGAGAGCTTCT	0.498000													15	81					0	0	0.000566183	0	0
MAVS	57506	broad.mit.edu	37	20	3842943	3842943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:3842943C>T	uc002wjw.3	+	5	677	c.508C>T	c.(508-510)CCA>TCA	p.P170S	MAVS_uc010zqn.1_Missense_Mutation_p.P112L|MAVS_uc002wjx.3_Missense_Mutation_p.P29S|MAVS_uc002wjy.3_5'UTR	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	170	Cytoplasmic (Probable).				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						CAGAGCCATCCCAAGGAATCC	0.587000													4	32					0	0	0.000602214	0	0
CDS2	8760	broad.mit.edu	37	20	5157336	5157336	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:5157336A>C	uc002wls.2	+	4	591	c.334A>C	c.(334-336)ATT>CTT	p.I112L	CDS2_uc002wlr.1_Missense_Mutation_p.I34L|CDS2_uc010zqt.1_RNA|CDS2_uc002wlu.2_Missense_Mutation_p.I57L|CDS2_uc010zqu.1_Intron|CDS2_uc002wlv.2_Missense_Mutation_p.I14L|CDS2_uc010zqv.1_5'Flank	NM_003818	NP_003809	O95674	CDS2_HUMAN	phosphatidate cytidylyltransferase 2	112					phospholipid biosynthetic process	integral to membrane|mitochondrial inner membrane	phosphatidate cytidylyltransferase activity				0						GATAATCACTATTGGCTACAA	0.448000													16	125					0	0	0.000422831	0	0
PLCB1	23236	broad.mit.edu	37	20	8717790	8717790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:8717790G>A	uc002wnb.2	+	20	2162	c.2159G>A	c.(2158-2160)GGA>GAA	p.G720E	PLCB1_uc010zrb.1_Missense_Mutation_p.G619E|PLCB1_uc002wna.2_Missense_Mutation_p.G720E|PLCB1_uc002wnc.1_Missense_Mutation_p.G619E|PLCB1_uc002wnd.1_Missense_Mutation_p.G297E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	720	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ACATCCCAAGGAAATGCTGTG	0.383000													6	51					0	0	8.12818e-05	0	0
PLCB1	23236	broad.mit.edu	37	20	8755313	8755313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:8755313C>T	uc002wnb.2	+	27	3061	c.3058C>T	c.(3058-3060)CGG>TGG	p.R1020W	PLCB1_uc010zrb.1_Missense_Mutation_p.R919W|PLCB1_uc002wna.2_Missense_Mutation_p.R1020W|PLCB1_uc002wnc.1_Missense_Mutation_p.R919W|PLCB1_uc002wnd.1_Missense_Mutation_p.R597W	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1020					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GCTTAATCTTCGGCAAGAACA	0.408000													6	42					0	0	8.12818e-05	0	0
C20orf103	24141	broad.mit.edu	37	20	9498701	9498701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:9498701G>A	uc002wni.1	+	5	719	c.490G>A	c.(490-492)GCC>ACC	p.A164T	C20orf103_uc010zrc.1_Missense_Mutation_p.A120T	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	164	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GAAGCACACAGCCAACTCGCA	0.527000													5	23					0	0	0.000157383	0	0
CST8	10047	broad.mit.edu	37	20	23472382	23472382	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:23472382G>A	uc002wth.1	+	2	435	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	26						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					ACCCAAAAAAGAATGAGACAG	0.532000													8	48					0	0	0.000274275	0	0
DEFB119	245932	broad.mit.edu	37	20	29965099	29965099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:29965099C>T	uc002wvt.2	-	2	325	c.205G>A	c.(205-207)GAG>AAG	p.E69K	DEFB119_uc002wvs.2_3'UTR	NM_153289	NP_695021	Q8N690	DB119_HUMAN	defensin, beta 119 isoform a precursor	69					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			GTATTTTCCTCTTTGCCAGAA	0.488000													29	67					0	0	0.000339439	0	0
TM9SF4	9777	broad.mit.edu	37	20	30745652	30745652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:30745652C>T	uc002wxj.2	+	14	1620	c.1385C>T	c.(1384-1386)CCC>CTC	p.P462L	TM9SF4_uc010zts.1_Missense_Mutation_p.P369L|TM9SF4_uc002wxk.2_Missense_Mutation_p.P445L|TM9SF4_uc010gdz.2_Missense_Mutation_p.P341L	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	462	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ATCTCCCTGCCCCTCGTCTAC	0.622000													13	90					0	0	0.000219431	0	0
SAMHD1	25939	broad.mit.edu	37	20	35533826	35533826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:35533826G>A	uc002xgh.1	-	12	1481	c.1351C>T	c.(1351-1353)CGT>TGT	p.R451C	SAMHD1_uc010gft.1_RNA	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	451					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				AATAGATTACGGTATTCAATT	0.348000													29	77					0	0	0.001512	0	0
EMILIN3	90187	broad.mit.edu	37	20	39991017	39991018	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:39991017_39991018GG>AA	uc002xjy.1	-	4	1415_1416	c.1191_1192CC>TT	c.(1189-1194)GGCCTT>GGTTTT	p.L398F		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	398						proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GCCCTCTCAAGGCCATCCATAC	0.663000													15	32					0	0	6.4e-05	0	0
PTPRT	11122	broad.mit.edu	37	20	40735465	40735466	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:40735465_40735466AC>TT	uc002xkg.2	-	24	3534_3535	c.3350_3351GT>AA	c.(3349-3351)CGT>CAA	p.R1117Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R1136Q|PTPRT_uc010ggi.2_Missense_Mutation_p.R320Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1117	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CCCGGAGCTCACGCACGCAGTT	0.579000													11	59					0	0	6.4e-05	0	0
SGK2	10110	broad.mit.edu	37	20	42195112	42195112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:42195112G>A	uc002xkv.2	+	1	376	c.157G>A	c.(157-159)GAG>AAG	p.E53K	SGK2_uc002xkt.2_Splice_Site|SGK2_uc002xkr.2_Splice_Site|SGK2_uc010ggm.2_Splice_Site|SGK2_uc002xks.2_Splice_Site|SGK2_uc002xku.2_Splice_Site|SGK2_uc002xkq.1_Splice_Site	NM_016276	NP_057360	Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2 isoform	53					intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			lung(3)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	6		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TGTCCCCCCAGAGCTGCCTGA	0.617000													6	54					0	0	0.000157383	0	0
SEMG2	6407	broad.mit.edu	37	20	43850925	43850925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:43850925G>A	uc010ggz.2	+	2	709	c.652G>A	c.(652-654)GGG>AGG	p.G218R	SEMG2_uc002xnk.2_Missense_Mutation_p.G218R|SEMG2_uc002xnl.2_Missense_Mutation_p.G218R	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	218	2-2.|Repeat-rich region.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TCAAAATAAAGGGCATTACCA	0.393000													14	70					0	0	0.000151284	0	0
NCOA3	8202	broad.mit.edu	37	20	46277849	46277849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:46277849C>T	uc002xtk.2	+	19	3852	c.3647C>T	c.(3646-3648)TCC>TTC	p.S1216F	NCOA3_uc010ght.1_Intron|NCOA3_uc002xtl.2_Intron|NCOA3_uc002xtm.2_Intron|NCOA3_uc002xtn.2_Missense_Mutation_p.S1216F|NCOA3_uc010zyc.1_Missense_Mutation_p.S1011F	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	1216	Acetyltransferase.				androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						CAGgtgagctcccaggtgagg	0.234000													4	22					0	0	0.000602214	0	0
PREX1	57580	broad.mit.edu	37	20	47305214	47305214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:47305214G>A	uc002xtw.1	-	10	1338	c.1315C>T	c.(1315-1317)CCC>TCC	p.P439S		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	439	DEP 1.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			AAGCACTTGGGGACAGTGCTC	0.557000													6	28					0	0	0.000157383	0	0
KCNG1	3755	broad.mit.edu	37	20	49626525	49626525	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:49626525G>A	uc002xwa.3	-	2	646	c.351C>T	c.(349-351)TTC>TTT	p.F117F	KCNG1_uc002xwb.2_Silent_p.F117F	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	117	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						GGTTGCGGTCGAAGAAGAACT	0.647000													6	44					0	0	0.00116845	0	0
ZFP64	55734	broad.mit.edu	37	20	50769848	50769848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:50769848G>A	uc002xwl.2	-	6	1232	c.883C>T	c.(883-885)CGC>TGC	p.R295C	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Missense_Mutation_p.R293C|ZFP64_uc002xwn.2_Missense_Mutation_p.R241C	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	295	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ATGGTGCAGCGGACATTGCAG	0.537000													10	30					0	0	0.000978159	0	0
BCAS1	8537	broad.mit.edu	37	20	52601928	52601928	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:52601928C>T	uc002xws.2	-	7	1376	c.1038G>A	c.(1036-1038)TCG>TCA	p.S346S	BCAS1_uc010zza.1_Silent_p.S104S|BCAS1_uc010zzb.1_Silent_p.S294S|BCAS1_uc010gim.2_Silent_p.S294S|BCAS1_uc002xwt.2_Silent_p.S346S|BCAS1_uc010gil.1_Silent_p.S346S	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	346						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GTGTGTGCCCCGATGGGTTGC	0.532000													26	72					0	0	0.001512	0	0
BCAS1	8537	broad.mit.edu	37	20	52644981	52644982	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:52644981_52644982CC>AT	uc002xws.2	-	4	1010_1011	c.672_673GG>AT	c.(670-675)GTGGAT>GTATAT	p.D225Y	BCAS1_uc010zzb.1_Missense_Mutation_p.D128Y|BCAS1_uc010gim.2_Missense_Mutation_p.D128Y|BCAS1_uc002xwt.2_Missense_Mutation_p.D225Y|BCAS1_uc010gil.1_Missense_Mutation_p.D225Y|BCAS1_uc010zzc.1_Missense_Mutation_p.D128Y	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	225						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GGAACCTCATCCACCTTGTCTT	0.530000													20	126					0	0	6.4e-05	0	0
CBLN4	140689	broad.mit.edu	37	20	54579025	54579025	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:54579025T>C	uc002xxa.2	-	1	988	c.203A>G	c.(202-204)AAC>AGC	p.N68S		NM_080617	NP_542184	Q9NTU7	CBLN4_HUMAN	cerebellin 4 precursor	68	C1q.					cell junction|extracellular region|synapse				ovary(3)|pancreas(1)	4			Colorectal(105;0.202)			GACCTTGGAGTTGGCCGCCCG	0.637000													16	85					0	0	0.00074312	0	0
C20orf107	388799	broad.mit.edu	37	20	55111330	55111330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:55111330G>A	uc010zzh.1	+	2	432	c.352G>A	c.(352-354)GAA>AAA	p.E118K	C20orf107_uc002xxz.2_Missense_Mutation_p.E118K	NM_001013646	NP_001013668	Q5JX69	CT107_HUMAN	hypothetical protein LOC388799 precursor	118	Cytoplasmic (Potential).					integral to membrane					0			Colorectal(105;0.202)			TACCTTAAACGAACTTGAAGT	0.443000													20	63					0	0	0.00121646	0	0
ZNF831	128611	broad.mit.edu	37	20	57828981	57828981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:57828981G>A	uc002yan.2	+	5	4217	c.4217G>A	c.(4216-4218)GGT>GAT	p.G1406D		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1406						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGTGAGCATGGTGACTGTACT	0.473000													8	50					0	0	0.000157383	0	0
EDN3	1908	broad.mit.edu	37	20	57876762	57876762	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:57876762G>A	uc002yap.2	+	2	719	c.350G>A	c.(349-351)TGG>TAG	p.W117*	EDN3_uc002yao.1_Nonsense_Mutation_p.W117*|EDN3_uc002yaq.2_Nonsense_Mutation_p.W117*|EDN3_uc002yar.2_Nonsense_Mutation_p.W117*|EDN3_uc002yas.2_Nonsense_Mutation_p.W117*	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	117		Cleavage; by KEL.			cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					GACATCATTTGGATCAACACT	0.597000													23	62					0	0	0.000720815	0	0
PHACTR3	116154	broad.mit.edu	37	20	58342270	58342270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:58342270G>A	uc002yau.2	+	5	1038	c.571G>A	c.(571-573)GAA>AAA	p.E191K	PHACTR3_uc002yat.2_Missense_Mutation_p.E188K|PHACTR3_uc010zzw.1_Missense_Mutation_p.E150K|PHACTR3_uc002yav.2_Missense_Mutation_p.E150K|PHACTR3_uc002yaw.2_Missense_Mutation_p.E150K|PHACTR3_uc002yax.2_Intron	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	191						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CAGTGGTGAAGAAGCAGACGC	0.542000													5	34					0	0	0.00116845	0	0
DIDO1	11083	broad.mit.edu	37	20	61511132	61511132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:61511132G>A	uc002ydr.1	-	16	6440	c.6176C>T	c.(6175-6177)CCC>CTC	p.P2059L	DIDO1_uc002yds.1_Missense_Mutation_p.P2059L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2059					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GTCGGCCTCGGGGCCCTGTCC	0.687000													20	107					0	0	0.000229342	0	0
DIDO1	11083	broad.mit.edu	37	20	61527641	61527641	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:61527641G>C	uc002ydr.1	-	8	2422	c.2158C>G	c.(2158-2160)CGC>GGC	p.R720G	DIDO1_uc002yds.1_Missense_Mutation_p.R720G|DIDO1_uc002ydt.1_Missense_Mutation_p.R720G|DIDO1_uc002ydu.1_Missense_Mutation_p.R720G	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	720	TFIIS central.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTCTTGTAGCGATTATCTGTA	0.408000													3	47					0	0	6.4e-05	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737326	62737326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr20:62737326C>T	uc011abt.1	-	1	859	c.859G>A	c.(859-861)GAC>AAC	p.D287N		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	287	Extracellular (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					TGGGGCAGGTCCGTGGTCAGG	0.637000													10	29					0	0	0.000673444	0	0
GCFC1	94104	broad.mit.edu	37	21	34133374	34133375	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:34133374_34133375GG>TT	uc002yqn.2	-	5	1160_1161	c.970_971CC>AA	c.(970-972)CCT>AAT	p.P324N	GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.P324N|GCFC1_uc002yqr.2_Missense_Mutation_p.P324N	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	324						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TCGTACCTGAGGGATATTAATT	0.342000													12	229					0	0	6.4e-05	0	0
GART	2618	broad.mit.edu	37	21	34882224	34882224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:34882224G>A	uc002yrx.2	-	18	2453	c.2318C>T	c.(2317-2319)TCC>TTC	p.S773F	GART_uc002yrz.2_Missense_Mutation_p.S773F|GART_uc010gmd.2_Missense_Mutation_p.S435F|GART_uc002yry.2_Missense_Mutation_p.S773F	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	773	AIRS.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	CACACGTGGGGAACCTTCATT	0.303000													6	36					0	0	0.00116845	0	0
DOPEY2	9980	broad.mit.edu	37	21	37591781	37591781	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:37591781C>A	uc002yvg.2	+	10	1320	c.1241C>A	c.(1240-1242)TCG>TAG	p.S414*	DOPEY2_uc011aeb.1_Nonsense_Mutation_p.S414*	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	414					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGTGGAAATTCGCTGATAAGG	0.438000													8	46					3.09899e-07	1.83244e-06	0.000274275	1	0
DSCAM	1826	broad.mit.edu	37	21	41452109	41452109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:41452109C>T	uc002yyq.1	-	25	4842	c.4390G>A	c.(4390-4392)GAA>AAA	p.E1464K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1464	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCTATGATTTCACTTATGCGC	0.458000													13	75					0	0	0.00136819	0	0
UMODL1	89766	broad.mit.edu	37	21	43504230	43504231	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:43504230_43504231GG>TA	uc002zaf.1	+	3	356_357	c.356_357GG>TA	c.(355-357)GGG>GTA	p.G119V	UMODL1_uc002zad.1_Missense_Mutation_p.G47V|UMODL1_uc002zae.1_Missense_Mutation_p.G47V|UMODL1_uc002zag.1_Missense_Mutation_p.G119V|UMODL1_uc010gow.1_5'Flank|UMODL1_uc002zai.1_5'Flank|UMODL1_uc010gox.1_5'Flank|UMODL1_uc010goy.1_5'Flank|UMODL1_uc002zaj.1_5'Flank|UMODL1_uc010goz.1_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	119	Extracellular (Potential).|WAP.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TCAAGACCTGGGGCCTGCCCCG	0.574000													9	67					0	0	6.4e-05	0	0
SLC37A1	54020	broad.mit.edu	37	21	43959705	43959705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:43959705G>A	uc002zbi.2	+	7	846	c.434G>A	c.(433-435)GGC>GAC	p.G145D	SLC37A1_uc002zbj.2_Missense_Mutation_p.G145D	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	145	Helical; (Potential).				carbohydrate transport|transmembrane transport	integral to membrane					0						GCCCTGTTCGGCTTAGGGTAT	0.537000													8	35					0	0	0.000673444	0	0
C21orf29	54084	broad.mit.edu	37	21	45941994	45941994	+	Silent	SNP	G	T	T	rs148471285		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:45941994G>T	uc002zfe.1	-	9	1404	c.1338C>A	c.(1336-1338)GGC>GGA	p.G446G	C21orf29_uc010gpv.1_Silent_p.G378G	NM_144991	NP_659428	Q8WU66	TSEAR_HUMAN	chromosome 21 open reading frame 29 precursor	446	EAR 3.				cell adhesion	extracellular region	structural molecule activity				0						TGTGGTTGTCGCCTGGAACCA	0.647000													8	54					0.000274275	0.00160511	0.000274275	1	0
MCM3AP	8888	broad.mit.edu	37	21	47699992	47699992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr21:47699992G>A	uc002zir.1	-	4	1618	c.1582C>T	c.(1582-1584)CCG>TCG	p.P528S		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	528					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TCTGTGCTCGGGCTGACTTCA	0.537000													20	87					0	0	0.00152264	0	0
psiTPTE22	387590	broad.mit.edu	37	22	17178545	17178545	+	RNA	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:17178545C>T	uc002zls.1	+	3		c.627C>T								Homo sapiens cDNA FLJ10437 fis, clone NT2RP1000581.												0						TCCGGGACATCCGTTGGGGCT	0.582000													7	27					0	0	0.000274275	0	0
CECR1	51816	broad.mit.edu	37	22	17688089	17688089	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:17688089G>A	uc002zmk.1	-	2	626	c.414C>T	c.(412-414)TTC>TTT	p.F138F	CECR1_uc010gqu.1_Silent_p.F138F|CECR1_uc011agi.1_Silent_p.F96F|CECR1_uc011agj.1_Silent_p.F96F	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	138	PRB domain.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				CCCTTGGGGTGAAACAGATGT	0.542000													24	34					0	0	0.00106085	0	0
GGT3P	2679	broad.mit.edu	37	22	18769697	18769697	+	RNA	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:18769697A>G	uc010gri.1	-	1		c.148T>C			GGT3P_uc011ago.1_RNA|GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						GTTTTCCAGGACTGCCGCCAA	0.682000													3	81					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													3	16					0	0	6.4e-05	0	0
KLHL22	84861	broad.mit.edu	37	22	20819739	20819739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:20819739G>A	uc002zsl.1	-	4	627	c.518C>T	c.(517-519)ACC>ATC	p.T173I	KLHL22_uc011ahr.1_Missense_Mutation_p.T30I|KLHL22_uc002zsm.1_Missense_Mutation_p.T173I	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	173					cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GAGGATATAGGTGTCCAGTTG	0.527000													32	49					0	0	0.00111076	0	0
TOP3B	8940	broad.mit.edu	37	22	22323083	22323083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:22323083G>A	uc002zvs.2	-	7	1081	c.646C>T	c.(646-648)CCG>TCG	p.P216S	TOP3B_uc010gtm.1_5'Flank|TOP3B_uc002zvr.2_5'UTR|TOP3B_uc010gtl.2_Missense_Mutation_p.P216S|TOP3B_uc002zvt.3_Missense_Mutation_p.P216S	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	216					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		GTCTGACACGGCCCAAAGGAG	0.478000													15	34					0	0	0.000219431	0	0
PIWIL3	440822	broad.mit.edu	37	22	25144949	25144949	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:25144949C>T	uc003abd.1	-	12	1791	c.1374G>A	c.(1372-1374)TTG>TTA	p.L458L	PIWIL3_uc011ajx.1_Silent_p.L349L|PIWIL3_uc011ajy.1_Silent_p.L349L|PIWIL3_uc010gut.1_Silent_p.L458L	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	458					cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						TATCAAATTTCAAATCCCAGA	0.348000													23	45					0	0	0.00047179	0	0
SYN3	8224	broad.mit.edu	37	22	33327390	33327390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:33327390C>T	uc003amx.2	-	3	605	c.446G>A	c.(445-447)GGG>GAG	p.G149E	SYN3_uc003amy.2_Missense_Mutation_p.G149E|SYN3_uc003amz.2_Missense_Mutation_p.G149E	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	149	C; actin-binding and synaptic-vesicle binding.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						CACTTTGGTCCCATTTCTCAC	0.488000													22	50					0	0	0.000375601	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37499285	37499285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:37499285G>A	uc003aqs.1	-	2	314	c.200C>T	c.(199-201)TCG>TTG	p.S67L	TMPRSS6_uc003aqt.1_Missense_Mutation_p.S58L|TMPRSS6_uc003aqu.2_Missense_Mutation_p.S58L	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	67	Helical; Signal-anchor for type II membrane protein; (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CACCCCCGCCGAAGCCAGCAC	0.547000													21	22					0	0	0.000229342	0	0
CDC42EP1	11135	broad.mit.edu	37	22	37962530	37962530	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:37962530C>T	uc003asz.3	+	2	577	c.174C>T	c.(172-174)TTC>TTT	p.F58F		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	58					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					GGGATGTCTTCGGGGACACGT	0.652000													12	22					0	0	0.000219431	0	0
KCNJ4	3761	broad.mit.edu	37	22	38823144	38823144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:38823144C>T	uc003avs.1	-	2	1091	c.994G>A	c.(994-996)GAC>AAC	p.D332N	KCNJ4_uc003avt.1_Missense_Mutation_p.D332N	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	332	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					CGTGAGTAGTCCACCTTGTAG	0.642000													12	20					0	0	0.00136819	0	0
KCNJ4	3761	broad.mit.edu	37	22	38824022	38824022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:38824022G>A	uc003avs.1	-	2	213	c.116C>T	c.(115-117)TCG>TTG	p.S39L	KCNJ4_uc003avt.1_Missense_Mutation_p.S39L	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	39	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					GTAGCGCTGCGACTTGTTGCT	0.617000													86	117					0	0	0.000781405	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42537223	42537223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:42537223G>A	uc003bci.2	-	7	1223	c.842C>T	c.(841-843)CCC>CTC	p.P281L	CYP2D7P1_uc003bcg.2_Missense_Mutation_p.P25L|CYP2D7P1_uc003bch.2_Missense_Mutation_p.P25L|CYP2D7P1_uc010gyv.2_Missense_Mutation_p.P65L|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_3'UTR	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						CACACTCAGGGGGATGATGTC	0.602000													5	9					0	0	0.000602214	0	0
ARSA	410	broad.mit.edu	37	22	51064619	51064619	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr22:51064619C>T	uc003bnb.3	-	6	1189	c.936G>A	c.(934-936)GAG>GAA	p.E312E	ARSA_uc003bna.3_Silent_p.E228E|ARSA_uc003bnc.3_Silent_p.E312E|ARSA_uc003bnd.3_Silent_p.E312E|ARSA_uc003bmz.3_Silent_p.E312E	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	312			E -> D (in MLD; low amounts of residual enzyme activity; leads to a decreased stability of the mutant enzyme).			lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	CCAAGGCAGGCTCTCGGACAC	0.642000													8	11					0	0	0.000157383	0	0
CHL1	10752	broad.mit.edu	37	3	367692	367692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:367692C>T	uc003bou.2	+	4	413	c.142C>T	c.(142-144)CCC>TCC	p.P48S	CHL1_uc003bot.2_Missense_Mutation_p.P48S|CHL1_uc003bow.1_Missense_Mutation_p.P48S|CHL1_uc011asi.1_Missense_Mutation_p.P48S	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	48	Ig-like C2-type 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AGTTGCCTTTCCCTTCGATGA	0.343000													6	20					0	0	8.12818e-05	0	0
NUP210	23225	broad.mit.edu	37	3	13381526	13381526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:13381526G>A	uc003bxv.1	-	25	3382	c.3299C>T	c.(3298-3300)TCC>TTC	p.S1100F		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1100	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GCCGCCCTCGGAGGTGACCTG	0.667000													9	54					0	0	0.000673444	0	0
COLQ	8292	broad.mit.edu	37	3	15507869	15507869	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:15507869G>A	uc003bzx.2	-	12	919	c.793C>T	c.(793-795)CCC>TCC	p.P265S	COLQ_uc003bzv.2_Missense_Mutation_p.P255S|COLQ_uc003bzz.2_Missense_Mutation_p.P256S|COLQ_uc010heo.2_Missense_Mutation_p.P231S|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.P124S|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	265	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						GGGCCTGGGGGCCCCGGACGG	0.617000													7	34					0	0	0.000157383	0	0
GALNTL2	117248	broad.mit.edu	37	3	16242266	16242266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:16242266G>A	uc003car.3	+	3	1322	c.847G>A	c.(847-849)GAT>AAT	p.D283N	GALNTL2_uc003caq.3_Missense_Mutation_p.D16N	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	283	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CGTCTTCATGGATGCCCACTG	0.612000													6	18					0	0	0.000157383	0	0
SGOL1	151648	broad.mit.edu	37	3	20219763	20219763	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:20219763G>T	uc003cbs.2	-	4	603	c.416C>A	c.(415-417)CCG>CAG	p.P139Q	SGOL1_uc003cbr.2_Missense_Mutation_p.P139Q|SGOL1_uc010hfa.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbt.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbu.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbv.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbw.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbx.2_Missense_Mutation_p.P139Q|SGOL1_uc003cby.2_Missense_Mutation_p.P139Q|SGOL1_uc003cbz.2_Missense_Mutation_p.P139Q|SGOL1_uc003cca.2_Missense_Mutation_p.P139Q|SGOL1_uc003ccb.2_Missense_Mutation_p.P139Q|SGOL1_uc003ccc.2_Missense_Mutation_p.P139Q	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	139	Necessary for interaction with PPP2CA and PPP2R1A.				attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						TGATACTAACGGTAAATCCTT	0.303000													8	99					1.12685e-05	6.62554e-05	0.000274275	1	0
ZNF385D	79750	broad.mit.edu	37	3	21467107	21467107	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:21467107G>A	uc003cce.2	-	6	1137	c.729C>T	c.(727-729)GCC>GCT	p.A243A		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	243						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						CCCTAGGAAAGGCTTTGATAG	0.373000													5	31					0	0	8.12818e-05	0	0
TGFBR2	7048	broad.mit.edu	37	3	30691871	30691871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:30691871G>A	uc003ceo.2	+	3	755	c.373G>A	c.(373-375)GAA>AAA	p.E125K	TGFBR2_uc003cen.2_Missense_Mutation_p.E150K	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	125	Extracellular (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						CATTATGAAGGAAAAAAAAAA	0.418000													8	47					0	0	0.000274275	0	0
FBXL2	25827	broad.mit.edu	37	3	33425589	33425589	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:33425589A>G	uc003cfp.2	+	14	1131	c.1060A>G	c.(1060-1062)ATC>GTC	p.I354V	FBXL2_uc011axm.1_RNA|FBXL2_uc011axn.1_RNA|FBXL2_uc011axo.1_Missense_Mutation_p.I249V|FBXL2_uc011axp.1_Missense_Mutation_p.I270V|FBXL2_uc011axq.1_RNA|FBXL2_uc011axr.1_RNA|FBXL2_uc011axs.1_RNA	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2	354	LRR 12.				interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						CTGCCTCCTCATCACTGATGT	0.582000													7	35					0	0	8.12818e-05	0	0
TRANK1	9881	broad.mit.edu	37	3	36893645	36893645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:36893645C>T	uc003cgj.2	-	4	3261	c.2959G>A	c.(2959-2961)GCC>ACC	p.A987T		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1537					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						ACCTGGTGGGCTCCAAATTCA	0.388000													7	23					0	0	8.12818e-05	0	0
TRANK1	9881	broad.mit.edu	37	3	36899218	36899218	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:36899218C>T	uc003cgj.2	-	3	515	c.213G>A	c.(211-213)GGG>GGA	p.G71G		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	621					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTGAGAGCTTCCCCAGGTGGG	0.572000													12	65					0	0	0.00136819	0	0
ITGA9	3680	broad.mit.edu	37	3	37778443	37778443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:37778443G>A	uc003chd.2	+	20	2256	c.2203G>A	c.(2203-2205)GAA>AAA	p.E735K		NM_002207	NP_002198	Q13797	ITA9_HUMAN	integrin, alpha 9 precursor	735	Extracellular (Potential).				axon guidance|cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(3)|pancreas(1)|lung(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.165)|Kidney(284;0.197)		TGGGGAAGAGGAAGTTCTCAG	0.433000													6	50					0	0	0.000157383	0	0
XYLB	9942	broad.mit.edu	37	3	38411643	38411643	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:38411643C>A	uc003cic.2	+	9	852	c.743C>A	c.(742-744)CCA>CAA	p.P248Q	XYLB_uc011ayp.1_Missense_Mutation_p.P111Q|XYLB_uc003cid.1_Missense_Mutation_p.P170Q	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	248					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		CTTAGCCCACCAGTACCATCA	0.473000													10	36					3.07112e-06	1.81083e-05	0.000978159	1	0
SCN10A	6336	broad.mit.edu	37	3	38738878	38738878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:38738878C>T	uc003ciq.2	-	27	5833	c.5833G>A	c.(5833-5835)GAA>AAA	p.E1945K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1945					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CTGGTGGCTTCATCTTCATTT	0.478000													12	55					0	0	0.000978159	0	0
SCN10A	6336	broad.mit.edu	37	3	38739953	38739953	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:38739953C>T	uc003ciq.2	-	27	4758	c.4758G>A	c.(4756-4758)CTG>CTA	p.L1586L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1586	IV.|Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CCGCTCGGATCAGTCTGAGGA	0.527000													7	39					0	0	8.12818e-05	0	0
SCN11A	11280	broad.mit.edu	37	3	38888258	38888258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:38888258G>A	uc011ays.1	-	26	5502	c.5303C>T	c.(5302-5304)TCA>TTA	p.S1768L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1768					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTGGAGTGGTGAATGAGGCCC	0.428000													9	32					0	0	0.000442599	0	0
SCN11A	11280	broad.mit.edu	37	3	38949533	38949533	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:38949533G>A	uc011ays.1	-	10	1579	c.1380C>T	c.(1378-1380)CTC>CTT	p.L460L		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	460					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TATTACCAAAGAGCTTTCTCT	0.398000													8	56					0	0	0.000157383	0	0
XIRP1	165904	broad.mit.edu	37	3	39226633	39226633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:39226633G>A	uc003cjk.1	-	2	4525	c.4304C>T	c.(4303-4305)CCC>CTC	p.P1435L	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.P118L	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1435							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		TGGTGAGGTGGGATCATGGTT	0.642000													9	70					0	0	0.000673444	0	0
ZNF619	285267	broad.mit.edu	37	3	40528402	40528403	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:40528402_40528403CC>TT	uc011azb.1	+	6	799_800	c.521_522CC>TT	c.(520-522)CCC>CTT	p.P174L	ZNF619_uc010hhz.2_Missense_Mutation_p.P125L|ZNF619_uc003ckj.2_Missense_Mutation_p.P118L|ZNF619_uc011azc.1_Missense_Mutation_p.P134L|ZNF619_uc011azd.1_Missense_Mutation_p.P90L|ZNF619_uc011aza.1_Missense_Mutation_p.P76L	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	174					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		ATGGACGTTCCCCAGCACCCTG	0.446000													8	32					0	0	6.4e-05	0	0
TRAK1	22906	broad.mit.edu	37	3	42230613	42230613	+	Silent	SNP	C	T	T	rs141503991	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:42230613C>T	uc003cky.2	+	6	903	c.687C>T	c.(685-687)TCC>TCT	p.S229S	TRAK1_uc011azh.1_Silent_p.S229S|TRAK1_uc011azi.1_Silent_p.S229S|TRAK1_uc003ckz.3_Silent_p.S155S|TRAK1_uc011azj.1_Silent_p.S155S|TRAK1_uc003cla.2_Silent_p.S171S	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	229	Potential.|HAP1 N-terminal.				endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						TACTTCGATCCGAGGTGATGT	0.493000													6	32					0	0	8.12818e-05	0	0
CELSR3	1951	broad.mit.edu	37	3	48668507	48668507	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:48668507G>A	uc003cuf.1	-	45	11268	c.11268C>T	c.(11266-11268)ATC>ATT	p.I3756I	SLC26A6_uc003cug.2_Silent_p.I330I|SLC26A6_uc003cuh.2_Silent_p.I351I|SLC26A6_uc010hke.2_Silent_p.I202I|SLC26A6_uc003cuk.2_Silent_p.I244I|SLC26A6_uc003cui.2_Silent_p.I351I|SLC26A6_uc003cuj.2_Silent_p.I351I|SLC26A6_uc011bbp.1_Silent_p.I315I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAACCACAGCGATGGTGAAGG	0.612000													14	50					0	0	0.000219431	0	0
BSN	8927	broad.mit.edu	37	3	49691254	49691254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:49691254G>A	uc003cxe.3	+	5	4379	c.4265G>A	c.(4264-4266)AGC>AAC	p.S1422N		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1422					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TATGGACACAGCCCAACCACT	0.592000													16	62					0	0	0.00152264	0	0
DOCK3	1795	broad.mit.edu	37	3	51264839	51264839	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:51264839G>A	uc011bds.1	+	16	1526	c.1503G>A	c.(1501-1503)CGG>CGA	p.R501R		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	501	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ACCGGTTCCGGGGCTCCCACC	0.478000													7	42					0	0	8.12818e-05	0	0
ITIH1	3697	broad.mit.edu	37	3	52816017	52816017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:52816017C>T	uc003dfs.2	+	7	773	c.749C>T	c.(748-750)TCC>TTC	p.S250F	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	250					hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TGCTCTACATCCTTACTGAAC	0.572000													16	34					0	0	0.000422831	0	0
EPHA3	2042	broad.mit.edu	37	3	89259296	89259296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:89259296C>T	uc003dqy.2	+	3	665	c.440C>T	c.(439-441)GCA>GTA	p.A147V	EPHA3_uc003dqx.1_Missense_Mutation_p.A147V|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	147	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GACACCATTGCAGCTGATGAA	0.418000										TSP Lung(6;0.00050)			12	72					0	0	0.000151284	0	0
EPHA3	2042	broad.mit.edu	37	3	89521623	89521623	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:89521623C>T	uc003dqy.2	+	16	2925	c.2700C>T	c.(2698-2700)AAC>AAT	p.N900N	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	900	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GGCCATCAAACCTTCTTCTGG	0.468000										TSP Lung(6;0.00050)			12	75					0	0	0.000308642	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806672	97806672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:97806672C>T	uc011bgs.1	+	1	656	c.656C>T	c.(655-657)TCT>TTT	p.S219F		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATCATAATCTCTTATACTCGT	0.368000													4	40					0	0	0.00024832	0	0
OR5H6	79295	broad.mit.edu	37	3	97983289	97983289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:97983289C>T	uc003dsi.1	+	1	161	c.161C>T	c.(160-162)ACC>ATC	p.T54I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	54	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						TATCTCATCACCATCATGGGG	0.408000													10	79					0	0	0.000673444	0	0
COL8A1	1295	broad.mit.edu	37	3	99513167	99513167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:99513167G>A	uc003dtg.1	+	5	667	c.422G>A	c.(421-423)GGG>GAG	p.G141E	COL8A1_uc003dth.1_Missense_Mutation_p.G141E|COL8A1_uc003dti.1_Missense_Mutation_p.G142E	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	141	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						CCAGGTCATGGGATACCTGGA	0.567000													5	30					0	0	0.000602214	0	0
RETNLB	84666	broad.mit.edu	37	3	108475997	108475997	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:108475997G>A	uc003dxh.2	-	1	134	c.36C>T	c.(34-36)ATC>ATT	p.I12I		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	12					cell proliferation	extracellular region	hormone activity			skin(1)	1						GGAGAAGGGGGATTAGGATGA	0.507000													6	29					0	0	8.12818e-05	0	0
TRAT1	50852	broad.mit.edu	37	3	108568021	108568021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:108568021G>A	uc003dxi.1	+	5	367	c.223G>A	c.(223-225)GAT>AAT	p.D75N	TRAT1_uc010hpx.1_Missense_Mutation_p.D38N	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	75	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						AGAACCAATGGATGAAAATTG	0.338000													7	41					0	0	8.12818e-05	0	0
MORC1	27136	broad.mit.edu	37	3	108773644	108773644	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:108773644G>A	uc003dxl.2	-	14	1348	c.1261C>T	c.(1261-1263)CAA>TAA	p.Q421*	MORC1_uc011bhn.1_Nonsense_Mutation_p.Q421*	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	421					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TTATACTCTTGGACATTGAGA	0.408000													5	60					0	0	0.00116845	0	0
ZBED2	79413	broad.mit.edu	37	3	111312559	111312559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:111312559C>T	uc003dxy.2	-	2	1375	c.490G>A	c.(490-492)GAA>AAA	p.E164K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	164							DNA binding|metal ion binding			skin(1)	1						ACTGCCCTTTCCCTCCTAAGC	0.607000													17	50					0	0	0.000958276	0	0
KIAA1407	57577	broad.mit.edu	37	3	113737574	113737574	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:113737574A>G	uc003eax.2	-	8	1261	c.1114T>C	c.(1114-1116)TTG>CTG	p.L372L	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Silent_p.L350L|KIAA1407_uc011bip.1_Silent_p.L359L	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	372	Potential.									ovary(2)	2						TCCCGCTCCAACTTCTGGAAT	0.438000													19	108					0	0	0.000295444	0	0
DRD3	1814	broad.mit.edu	37	3	113890765	113890765	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:113890765C>T	uc003ebd.2	-	3	498	c.75G>A	c.(73-75)CAG>CAA	p.Q25Q	DRD3_uc010hqn.1_Silent_p.Q25Q|DRD3_uc003ebb.1_Silent_p.Q25Q|DRD3_uc003ebc.1_Silent_p.Q25Q	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	25	Extracellular (Probable).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	GTGGGCGGGCCTGGCTGGCAC	0.627000													4	13					0	0	0.00024832	0	0
C3orf15	89876	broad.mit.edu	37	3	119451185	119451185	+	Silent	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:119451185T>C	uc003ede.3	+	9	1140	c.1063T>C	c.(1063-1065)TTG>CTG	p.L355L	C3orf15_uc010hqy.1_Silent_p.L355L|C3orf15_uc010hqz.2_Silent_p.L293L|C3orf15_uc011bjd.1_Silent_p.L229L|C3orf15_uc011bje.1_Silent_p.L335L|C3orf15_uc010hra.1_Silent_p.L116L	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		AGAAGGGAAGTTGGAGAGAAG	0.363000													23	94					0	0	0.000720815	0	0
ARGFX	503582	broad.mit.edu	37	3	121304947	121304947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:121304947C>T	uc003eef.2	+	5	543	c.448C>T	c.(448-450)CCA>TCA	p.P150S		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	150						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		CCAGATCCTTCCATCCAAGAA	0.512000													10	43					0	0	0.000442599	0	0
CASR	846	broad.mit.edu	37	3	121980683	121980683	+	Silent	SNP	C	T	T	rs148721982		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:121980683C>T	uc003eev.3	+	4	1173	c.801C>T	c.(799-801)ATC>ATT	p.I267I	CASR_uc003eew.3_Silent_p.I267I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	267	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity	p.I267I(1)		ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCAAAGTCATCGTGGTTTTCT	0.527000													25	73					0	0	0.000375601	0	0
CASR	846	broad.mit.edu	37	3	121980842	121980842	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:121980842C>T	uc003eev.3	+	4	1332	c.960C>T	c.(958-960)TTC>TTT	p.F320F	CASR_uc003eew.3_Silent_p.F320F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	320	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCATTGGATTCGCTCTGAAGG	0.577000													7	38					0	0	0.000157383	0	0
MUC13	56667	broad.mit.edu	37	3	124627012	124627012	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:124627012C>A	uc003ehq.1	-	11	1542	c.1518G>T	c.(1516-1518)ATG>ATT	p.M506I		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	506	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane					0						CAGGGCGGGGCATGCTGCTGT	0.517000													6	23					2.0095e-06	1.1871e-05	8.12818e-05	1	0
ALDH1L1	10840	broad.mit.edu	37	3	125831648	125831648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:125831648G>A	uc003eim.1	-	19	2348	c.2158C>T	c.(2158-2160)CAT>TAT	p.H720Y	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.H619Y|ALDH1L1_uc003ein.1_Missense_Mutation_p.H255Y	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	720	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	AACTCATCATGAATGGAGTCC	0.562000													5	43					0	0	8.12818e-05	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642866	127642866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:127642866G>A	uc010hsr.2	+	1	965	c.962G>A	c.(961-963)GGA>GAA	p.G321E	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Missense_Mutation_p.G321E	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	321										ovary(1)	1						GAGGGTTTAGGAACTGTGTGT	0.403000													11	57					0	0	0.000978159	0	0
CNBP	7555	broad.mit.edu	37	3	128890366	128890366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:128890366G>A	uc003elq.3	-	3	346	c.140C>T	c.(139-141)TCC>TTC	p.S47F	CNBP_uc003elr.3_Missense_Mutation_p.S40F|CNBP_uc011bku.1_Intron	NM_003418	NP_003409	P62633	CNBP_HUMAN	zinc finger protein 9 isoform 3	47					cholesterol biosynthetic process	endoplasmic reticulum	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AAGAGACGAGGAAACAAACTG	0.383000													8	43					0	0	0.000157383	0	0
Unknown	0	broad.mit.edu	37	3	129130042	129130042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:129130042C>T	uc003emg.2	-	5	1157	c.994G>A	c.(994-996)GAA>AAA	p.E332K		NM_207307	NP_997190			hypothetical protein LOC90288																		TTGCCCACTTCCTCCATCTCC	0.512000													4	11					0	0	0.00024832	0	0
BFSP2	8419	broad.mit.edu	37	3	133119167	133119167	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:133119167C>T	uc003epn.1	+	1	378	c.240C>T	c.(238-240)ATC>ATT	p.I80I		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	80	Head.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						CCCTCGGCATCAGCAGTGTCT	0.657000													6	60					0	0	0.00116845	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133674003	133674003	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:133674003C>T	uc003eqa.3	-	4	706	c.432G>A	c.(430-432)CAG>CAA	p.Q144Q	SLCO2A1_uc003eqb.3_Intron|SLCO2A1_uc011blv.1_Intron|SLCO2A1_uc010htw.1_5'UTR	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	144	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GCCAATGCTTCTGGCAGAGCT	0.627000													4	22					0	0	0.00024832	0	0
ESYT3	83850	broad.mit.edu	37	3	138170899	138170899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:138170899C>T	uc003esk.2	+	2	563	c.337C>T	c.(337-339)CCG>TCG	p.P113S	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	113						integral to membrane|plasma membrane					0						GATCCACTTCCCGGACGTGGA	0.667000													24	93					0	0	0.00178596	0	0
ESYT3	83850	broad.mit.edu	37	3	138189779	138189779	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:138189779C>A	uc003esk.2	+	17	1877	c.1651C>A	c.(1651-1653)CTC>ATC	p.L551I	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	551						integral to membrane|plasma membrane					0						GTGCCAGATCCTCCCCTATGC	0.562000													37	187					2.87052e-16	1.71028e-15	0.00111076	1	0
XRN1	54464	broad.mit.edu	37	3	142089409	142089409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:142089409G>A	uc003eus.2	-	27	3189	c.3122C>T	c.(3121-3123)ACT>ATT	p.T1041I	XRN1_uc010huu.2_Missense_Mutation_p.T507I|XRN1_uc003eut.2_Missense_Mutation_p.T1041I|XRN1_uc003euu.2_Missense_Mutation_p.T1041I	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1041					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						ACGAGATAAAGTACTGACAGG	0.313000													10	34					0	0	0.000673444	0	0
PLSCR2	57047	broad.mit.edu	37	3	146173214	146173214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:146173214C>T	uc003evv.1	-	5	466	c.133G>A	c.(133-135)GAA>AAA	p.E45K	PLSCR2_uc003evw.1_Missense_Mutation_p.E114K	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	45	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						TTCTTGATTTCATACATGTTA	0.328000													14	80					0	0	0.000219431	0	0
MED12L	116931	broad.mit.edu	37	3	150911370	150911370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:150911370G>A	uc003eyp.2	+	14	2100	c.2062G>A	c.(2062-2064)GAA>AAA	p.E688K	MED12L_uc011bnz.1_Missense_Mutation_p.E548K|MED12L_uc003eyn.2_Missense_Mutation_p.E723K|MED12L_uc003eyo.2_Missense_Mutation_p.E688K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	688					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGTGAAGAGGGAAAAGCCAAG	0.408000													12	68					0	0	0.000151284	0	0
GPR171	29909	broad.mit.edu	37	3	150916261	150916261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:150916261C>T	uc003eyq.3	-	3	1153	c.913G>A	c.(913-915)GAG>AAG	p.E305K	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	305	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCCTTGGTCTCTTTAGGTGAG	0.413000													9	42					0	0	0.000442599	0	0
IFT80	57560	broad.mit.edu	37	3	160083916	160083916	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:160083916C>A	uc011boy.1	-	6	897	c.464G>T	c.(463-465)TGG>TTG	p.W155L	IFT80_uc003fda.2_RNA|IFT80_uc003fdb.1_Missense_Mutation_p.W18L|IFT80_uc003fdd.1_Intron|IFT80_uc003fde.1_Missense_Mutation_p.W18L	NM_020800	NP_065851	Q9P2H3	IFT80_HUMAN	WD repeat domain 56	155	WD 3.					cilium axoneme|microtubule basal body				ovary(1)	1			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			ATCAGGGCCCCACGCTACTGA	0.353000													6	52					0.00116845	0.00679981	0.00116845	1	0
SI	6476	broad.mit.edu	37	3	164772986	164772986	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:164772986C>T	uc003fei.2	-	13	1570	c.1508G>A	c.(1507-1509)TGG>TAG	p.W503*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	503	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACTTACAATCCAAAGTCCATC	0.323000										HNSCC(35;0.089)			9	40					0	0	0.000274275	0	0
SLITRK3	22865	broad.mit.edu	37	3	164908584	164908584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:164908584C>T	uc003fej.3	-	2	479	c.35G>A	c.(34-36)GGA>GAA	p.G12E	SLITRK3_uc003fek.2_Missense_Mutation_p.G12E	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	12						integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CAACATCCTTCCTCTGTGAAG	0.398000										HNSCC(40;0.11)			8	33					0	0	0.000157383	0	0
SERPINI1	5274	broad.mit.edu	37	3	167543099	167543099	+	Silent	SNP	C	T	T	rs149238028		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:167543099C>T	uc003ffa.3	+	9	1419	c.1221C>T	c.(1219-1221)TTC>TTT	p.F407F	SERPINI1_uc003ffb.3_Silent_p.F407F	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	407					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						GACATGATTTCGAAGAACTTT	0.338000													30	130					0	0	0.000409698	0	0
TNFSF10	8743	broad.mit.edu	37	3	172232725	172232725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:172232725C>T	uc003fid.2	-	2	291	c.196G>A	c.(196-198)GAC>AAC	p.D66N	TNFSF10_uc003fie.2_Missense_Mutation_p.D66N	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	66	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TCATTGGGGTCCCAATAACTG	0.448000													21	93					0	0	0.00152264	0	0
KCNMB2	10242	broad.mit.edu	37	3	178543499	178543499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:178543499G>A	uc003fjd.2	+	3	523	c.180G>A	c.(178-180)ATG>ATA	p.M60I	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Missense_Mutation_p.M60I|KCNMB2_uc003fjf.2_Missense_Mutation_p.M60I|KCNMB2_uc011bqa.1_Missense_Mutation_p.M60I|KCNMB2_uc011bqb.1_Intron	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	60	Helical; Name=1; (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			GCTCCATCATGATGTATTTTC	0.527000													22	97					0	0	0.000586117	0	0
TFRC	7037	broad.mit.edu	37	3	195799012	195799012	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:195799012T>C	uc003fvz.3	-	5	729	c.446A>G	c.(445-447)GAA>GGA	p.E149G	TFRC_uc003fwa.3_Missense_Mutation_p.E149G|TFRC_uc010hzy.2_Missense_Mutation_p.E68G|TFRC_uc011btr.1_5'UTR	NM_003234	NP_003225	P02786	TFR1_HUMAN	transferrin receptor	149	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|interspecies interaction between organisms|proteolysis|transferrin transport|transmembrane transport	coated pit|endosome|integral to plasma membrane|melanosome	peptidase activity|transferrin receptor activity			ovary(3)	3	all_cancers(143;1.94e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.36e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.17e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00233)		ATATGAATTTTCATTCAGCAG	0.323000			T	BCL6	NHL								16	52					0	0	0.00074312	0	0
MFI2	4241	broad.mit.edu	37	3	196737642	196737642	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:196737642G>A	uc003fxk.3	-	10	1370	c.1257C>T	c.(1255-1257)ACC>ACT	p.T419T		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	419	Transferrin-like 2.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CGCCACTCAGGGTCACAGCGT	0.667000													6	21					0	0	8.12818e-05	0	0
LETM1	3954	broad.mit.edu	37	4	1834655	1834655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:1834655C>T	uc003gdv.2	-	6	1193	c.896G>A	c.(895-897)AGG>AAG	p.R299K		NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	299	Mitochondrial matrix (Potential).|LETM1.				cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			ATTGCTGGGCCTCTCCCCTGT	0.597000													5	55					0	0	0.000602214	0	0
WHSC1	7468	broad.mit.edu	37	4	1902413	1902413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:1902413C>T	uc003gdz.3	+	2	208	c.32C>T	c.(31-33)TCT>TTT	p.S11F	WHSC1_uc003geb.3_Missense_Mutation_p.S11F|WHSC1_uc003gec.3_Missense_Mutation_p.S11F|WHSC1_uc003ged.3_Missense_Mutation_p.S11F|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Missense_Mutation_p.S11F|WHSC1_uc003gdy.1_Missense_Mutation_p.S11F|WHSC1_uc010icd.1_Missense_Mutation_p.S11F|WHSC1_uc003gea.1_Missense_Mutation_p.S11F|WHSC1_uc010ice.1_Missense_Mutation_p.S11F|WHSC1_uc003geg.1_Missense_Mutation_p.S11F|WHSC1_uc003geh.1_Missense_Mutation_p.S11F	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	11					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		AGTCCCCTTTCTGTTCAGAGT	0.448000			T	IGH@	MM								18	82					0	0	0.00074312	0	0
WHSC1	7468	broad.mit.edu	37	4	1920195	1920195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:1920195G>A	uc003gdz.3	+	5	1431	c.1255G>A	c.(1255-1257)GGG>AGG	p.G419R	WHSC1_uc003geb.3_Missense_Mutation_p.G419R|WHSC1_uc003gec.3_Missense_Mutation_p.G419R|WHSC1_uc003ged.3_Missense_Mutation_p.G419R|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gdx.2_Missense_Mutation_p.G419R|WHSC1_uc003gdy.1_Missense_Mutation_p.G419R|WHSC1_uc010icd.1_Missense_Mutation_p.G419R|WHSC1_uc003gea.1_Missense_Mutation_p.G419R|WHSC1_uc010ice.1_Missense_Mutation_p.G419R|WHSC1_uc003geh.1_Missense_Mutation_p.G419R	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	419					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		CCCCGACATAGGGAAGAGTAC	0.557000			T	IGH@	MM								4	18					0	0	0.00116845	0	0
HTT	3064	broad.mit.edu	37	4	3123101	3123101	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:3123101C>T	uc011bvq.1	+	10	1366	c.1221C>T	c.(1219-1221)ACC>ACT	p.T407T		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	405					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		GGCAGCTCACCGCTGCTAAGG	0.547000													9	23					0	0	0.000442599	0	0
LRPAP1	4043	broad.mit.edu	37	4	3516526	3516526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:3516526C>T	uc003ghi.2	-	7	1049	c.964G>A	c.(964-966)GAG>AAG	p.E322K		NM_002337	NP_002328	P30533	AMRP_HUMAN	low density lipoprotein receptor-related protein	322	LDL receptor binding (Potential).				negative regulation of protein binding|negative regulation of very-low-density lipoprotein particle clearance|protein folding|vesicle-mediated transport	cell surface|integral to membrane|plasma membrane	asialoglycoprotein receptor activity|heparin binding|low-density lipoprotein particle receptor binding|receptor antagonist activity|unfolded protein binding|very-low-density lipoprotein particle receptor binding			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.165)		GCGTGCTTCTCGCGGCTGCGG	0.662000													12	52					0	0	0.000978159	0	0
BOD1L	259282	broad.mit.edu	37	4	13604640	13604640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:13604640G>A	uc003gmz.1	-	10	4001	c.3884C>T	c.(3883-3885)TCG>TTG	p.S1295L	BOD1L_uc010idr.1_Missense_Mutation_p.S632L	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1295							DNA binding			ovary(5)|breast(1)	6						TGGATCATACGATTCCCTCAG	0.463000													6	38					0	0	0.00116845	0	0
SLIT2	9353	broad.mit.edu	37	4	20521064	20521064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:20521064C>T	uc003gpr.1	+	12	1322	c.1118C>T	c.(1117-1119)TCC>TTC	p.S373F	SLIT2_uc003gps.1_Missense_Mutation_p.S373F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	373	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGACTGTTTTCCTTACAGCTC	0.308000													9	54					0	0	0.000673444	0	0
SLIT2	9353	broad.mit.edu	37	4	20568947	20568947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:20568947G>A	uc003gpr.1	+	27	2992	c.2788G>A	c.(2788-2790)GAT>AAT	p.D930N	SLIT2_uc003gps.1_Missense_Mutation_p.D922N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	930	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GTGTAAAAATGATGGCACATG	0.383000													13	65					0	0	0.00136819	0	0
SLC34A2	10568	broad.mit.edu	37	4	25664130	25664130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:25664130C>T	uc003grr.2	+	2	89	c.8C>T	c.(7-9)CCC>CTC	p.P3L	SLC34A2_uc003grs.2_Missense_Mutation_p.P3L|SLC34A2_uc010iev.2_Missense_Mutation_p.P3L	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	3	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				ACCATGGCTCCCTGGCCTGAA	0.532000													4	34					0	0	0.00024832	0	0
SEL1L3	23231	broad.mit.edu	37	4	25783942	25783942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:25783942C>T	uc003gru.3	-	15	2531	c.2379G>A	c.(2377-2379)ATG>ATA	p.M793I	SEL1L3_uc003grv.2_Missense_Mutation_p.M200I	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	793	Sel1-like 5.					integral to membrane	binding				0						CTGGGTTCCCCATTTCTTCTG	0.463000													5	44					0	0	0.000602214	0	0
TMEM156	80008	broad.mit.edu	37	4	39000431	39000431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:39000431G>A	uc003gto.2	-	2	295	c.187C>T	c.(187-189)CCA>TCA	p.P63S	TMEM156_uc010ifj.2_Missense_Mutation_p.P63S	NM_024943	NP_079219	Q8N614	TM156_HUMAN	transmembrane protein 156	63	Extracellular (Potential).					integral to membrane				skin(1)	1						TCCCTTACTGGTTGCAGAAAA	0.358000													4	18					0	0	0.00024832	0	0
PDS5A	23244	broad.mit.edu	37	4	39910119	39910119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:39910119G>A	uc003guv.3	-	11	1669	c.1129C>T	c.(1129-1131)CGT>TGT	p.R377C	PDS5A_uc010ifo.2_Missense_Mutation_p.R337C|PDS5A_uc003guw.3_Missense_Mutation_p.R377C	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	377					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						ACATCATGACGAATAGCTTCT	0.348000													26	91					0	0	0.000586117	0	0
N4BP2	55728	broad.mit.edu	37	4	40123874	40123874	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:40123874C>T	uc003guy.3	+	9	4481	c.4143C>T	c.(4141-4143)CCC>CCT	p.P1381P	N4BP2_uc010ifq.2_Silent_p.P1301P|N4BP2_uc010ifr.2_Silent_p.P1301P	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	1381						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						TGGCATTACCCCCTGAACTGG	0.418000													11	78					0	0	0.000978159	0	0
GABRB1	2560	broad.mit.edu	37	4	47033990	47033990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:47033990G>A	uc003gxh.2	+	2	514	c.140G>A	c.(139-141)GGA>GAA	p.G47E	GABRB1_uc011bze.1_5'UTR|GABRB1_uc011bzd.1_Missense_Mutation_p.G47E|GABRB1_uc010igg.2_RNA	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	47	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTGCTCAAAGGATATGACATT	0.443000													29	110					0	0	0.000491102	0	0
GABRB1	2560	broad.mit.edu	37	4	47405408	47405408	+	Silent	SNP	C	T	T	rs6286		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:47405408C>T	uc003gxh.2	+	6	992	c.618C>T	c.(616-618)ATC>ATT	p.I206I	GABRB1_uc011bze.1_Silent_p.I136I	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	206	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTAATAAAATCGAACTTCCTC	0.413000													7	27					0	0	8.12818e-05	0	0
ATP10D	57205	broad.mit.edu	37	4	47589102	47589102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:47589102G>A	uc003gxk.1	+	22	3984	c.3820G>A	c.(3820-3822)GGA>AGA	p.G1274R	ATP10D_uc003gxl.1_Missense_Mutation_p.G522R	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1274	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CATAGTTTTTGGAGCCATGTG	0.418000													11	64					0	0	0.000978159	0	0
FRYL	285527	broad.mit.edu	37	4	48542951	48542951	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:48542951C>A	uc003gyh.1	-	46	6319	c.5714G>T	c.(5713-5715)GGA>GTA	p.G1905V	FRYL_uc003gyg.1_Missense_Mutation_p.G601V|FRYL_uc003gyi.1_Missense_Mutation_p.G793V|FRYL_uc003gyj.1_Missense_Mutation_p.G200V	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1905					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						ATACTTGTTTCCCATTATAGG	0.333000													8	26					2.17888e-05	0.000127991	0.000442599	1	0
SMR3B	10879	broad.mit.edu	37	4	71255473	71255473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:71255473C>T	uc011cas.1	+	3	229	c.148C>T	c.(148-150)CCT>TCT	p.P50S	SMR3B_uc003hfh.2_Missense_Mutation_p.P50S	NM_006685	NP_006676	P02814	SMR3B_HUMAN	submaxillary gland androgen regulated protein 3	50	Poly-Pro.|Pro-rich.					extracellular space				skin(1)	1		all_hematologic(202;0.196)				TCCACCACCTCCTCCTCCACC	0.602000													6	24					0	0	0.00116845	0	0
ANKRD17	26057	broad.mit.edu	37	4	73956802	73956802	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:73956802G>A	uc003hgp.2	-	29	6660	c.6543C>T	c.(6541-6543)CCC>CCT	p.P2181P	ANKRD17_uc003hgo.2_Silent_p.P2068P|ANKRD17_uc003hgq.2_Silent_p.P1930P|ANKRD17_uc003hgr.2_Silent_p.P2180P	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2181					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGCCATGAGGGGGTGGTCTAA	0.502000													18	94					0	0	0.000958276	0	0
USO1	8615	broad.mit.edu	37	4	76650020	76650020	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:76650020G>C	uc003hiu.2	+	1	192	c.17G>C	c.(16-18)GGG>GCG	p.G6A	uc010iiy.2_5'Flank	NM_003715	NP_003706	O60763	USO1_HUMAN	USO1 homolog, vesicle docking protein	6	Globular head.				intracellular protein transport|vesicle fusion with Golgi apparatus	cytosol|Golgi membrane	protein binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTCCTCCGCGGGGTAATGGGG	0.652000													3	38					0	0	0.000602214	0	0
FRAS1	80144	broad.mit.edu	37	4	79373450	79373450	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:79373450G>A	uc003hlb.2	+	47	7145	c.6705G>A	c.(6703-6705)TTG>TTA	p.L2235L		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2234	CSPG 10.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTACAGAATTGATCTACAGAA	0.473000													5	17					0	0	0.000602214	0	0
PTPN13	5783	broad.mit.edu	37	4	87690977	87690977	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:87690977T>A	uc003hpz.2	+	29	5025	c.4545T>A	c.(4543-4545)TTT>TTA	p.F1515L	PTPN13_uc003hpy.2_Missense_Mutation_p.F1520L|PTPN13_uc003hqa.2_Missense_Mutation_p.F1496L|PTPN13_uc003hqb.2_Missense_Mutation_p.F1324L|PTPN13_uc003hqc.1_5'UTR	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	1515	PDZ 3.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		GATTCAGTTTTTCTCGAGAAG	0.318000													9	40					0	0	0.000978159	0	0
AFF1	4299	broad.mit.edu	37	4	87968715	87968715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:87968715C>T	uc003hqj.3	+	3	1414	c.1007C>T	c.(1006-1008)ACC>ATC	p.T336I	AFF1_uc011ccx.1_Missense_Mutation_p.T277I|AFF1_uc003hqh.1_Missense_Mutation_p.T343I|AFF1_uc011ccy.1_Missense_Mutation_p.T343I|AFF1_uc011ccz.1_Missense_Mutation_p.T343I|AFF1_uc003hqk.3_Missense_Mutation_p.T336I|AFF1_uc011cda.1_Intron	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	336						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		GCCAAGCTCACCAAACTGAAG	0.473000													11	94					0	0	0.00136819	0	0
PKD2	5311	broad.mit.edu	37	4	88967960	88967960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:88967960C>T	uc003hre.2	+	6	1552	c.1486C>T	c.(1486-1488)CGC>TGC	p.R496C	PKD2_uc011cdf.1_Intron	NM_000297	NP_000288	Q13563	PKD2_HUMAN	polycystin 2	496	Cytoplasmic (Potential).					basal cortex|basal plasma membrane|endoplasmic reticulum|integral to membrane|lamellipodium|microtubule basal body	calcium ion binding|cytoskeletal protein binding|voltage-gated chloride channel activity|voltage-gated sodium channel activity			skin(1)	1		Hepatocellular(203;0.114)|Acute lymphoblastic leukemia(40;0.221)		OV - Ovarian serous cystadenocarcinoma(123;9.98e-10)|COAD - Colon adenocarcinoma(81;0.0237)		ATTGGAAATTCGCATTCACAA	0.368000													13	73					0	0	0.000308642	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169028	90169028	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:90169028A>C	uc003hsm.1	-	2	2753	c.2234T>G	c.(2233-2235)CTC>CGC	p.L745R		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	745										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		CCTTCCTCTGAGCTTCTTATT	0.463000													18	68					0	0	0.000958276	0	0
FAM190A	401145	broad.mit.edu	37	4	91229510	91229510	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:91229510A>G	uc003hsv.3	+	2	415	c.75A>G	c.(73-75)AGA>AGG	p.R25R	FAM190A_uc003hsu.3_Silent_p.R25R|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Silent_p.R25R	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	25	Ser-rich.									large_intestine(1)|ovary(1)	2						TTAACAGAAGACATGATTCTC	0.463000													5	19					0	0	0.000602214	0	0
ADH1B	125	broad.mit.edu	37	4	100239275	100239275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:100239275G>A	uc003hus.3	-	3	271	c.187C>T	c.(187-189)CCT>TCT	p.P63S	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.P23S|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.P23S	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	63					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	AAAATCACAGGAAGGGGGGTC	0.507000													6	44					0	0	0.00116845	0	0
COL25A1	84570	broad.mit.edu	37	4	109817828	109817828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:109817828C>T	uc003hze.1	-	15	1432	c.901G>A	c.(901-903)GAA>AAA	p.E301K	COL25A1_uc003hzg.2_Missense_Mutation_p.E301K|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Missense_Mutation_p.E82K	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	301	Extracellular (Potential).|Collagen-like 3.					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		TGTACCTTTTCGCCTGTGTCA	0.423000													7	51					0	0	0.000274275	0	0
ENPEP	2028	broad.mit.edu	37	4	111398146	111398146	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:111398146C>T	uc003iab.3	+	1	918	c.576C>T	c.(574-576)TTC>TTT	p.F192F		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	192	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CCATGGAGTTCGCCGGCTGGC	0.507000													9	43					0	0	0.000978159	0	0
ANK2	287	broad.mit.edu	37	4	114274821	114274821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:114274821C>T	uc003ibe.3	+	38	5147	c.5047C>T	c.(5047-5049)CCC>TCC	p.P1683S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.P1698S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1650					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAAAGACATACCCCCAGATGA	0.443000													3	13					0	0	0.00024832	0	0
SEC24D	9871	broad.mit.edu	37	4	119745841	119745842	+	Missense_Mutation	DNP	GG	AA	AA	rs143180885	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:119745841_119745842GG>AA	uc003ici.3	-	3	453_454	c.181_182CC>TT	c.(181-183)CCC>TTC	p.P61F	SEC24D_uc003icj.3_Missense_Mutation_p.P61F|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	61	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						AGGAGGTGGGGGACCCGGAGGC	0.540000													9	86					0	0	6.4e-05	0	0
IL21	59067	broad.mit.edu	37	4	123536858	123536858	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:123536858C>T	uc003ies.2	-	3	384	c.339G>A	c.(337-339)GGG>GGA	p.G113G	IL21_uc010int.2_Silent_p.G106G	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	106					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						TCTGTCTTCTCCCTGCATTTG	0.348000													20	61					0	0	0.000295444	0	0
BBS12	166379	broad.mit.edu	37	4	123663309	123663309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:123663309C>T	uc003ieu.2	+	2	455	c.262C>T	c.(262-264)CTT>TTT	p.L88F		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	88					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						AATCAGTACTCTTTTGTTTCT	0.393000									Bardet-Biedl_syndrome				15	61					0	0	0.000566183	0	0
ANKRD50	57182	broad.mit.edu	37	4	125593057	125593057	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:125593057A>G	uc003ifg.3	-	3	1641	c.1375T>C	c.(1375-1377)TTA>CTA	p.L459L	ANKRD50_uc011cgo.1_Silent_p.L280L|ANKRD50_uc010inw.2_Silent_p.L459L	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	459										central_nervous_system(1)	1						GAGTTAATTAAGTGCAATGCA	0.388000													6	46					0	0	8.12818e-05	0	0
FAT4	79633	broad.mit.edu	37	4	126239578	126239578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:126239578C>T	uc003ifj.3	+	1	2012	c.2012C>T	c.(2011-2013)TCA>TTA	p.S671L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	671	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCCCAGTCATCAATGGCTCGC	0.488000													10	50					0	0	0.000978159	0	0
FAT4	79633	broad.mit.edu	37	4	126398441	126398441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:126398441G>A	uc003ifj.3	+	13	12425	c.12425G>A	c.(12424-12426)AGG>AAG	p.R4142K	FAT4_uc011cgp.1_Missense_Mutation_p.R2405K|FAT4_uc003ifi.1_Missense_Mutation_p.R1620K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4142	Laminin G-like 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTCAATGGAAGGCCTCTGGAA	0.413000													17	91					0	0	0.000566183	0	0
PLK4	10733	broad.mit.edu	37	4	128807865	128807865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:128807865C>T	uc003ifo.2	+	5	1585	c.1340C>T	c.(1339-1341)CCT>CTT	p.P447L	PLK4_uc011cgs.1_Missense_Mutation_p.P415L|PLK4_uc011cgt.1_Missense_Mutation_p.P406L	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	447					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						TTTGAAAGACCTGATAACAAT	0.358000													5	28					0	0	0.00116845	0	0
MAML3	55534	broad.mit.edu	37	4	140811010	140811010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:140811010G>A	uc003ihz.1	-	3	2320	c.1568C>T	c.(1567-1569)CCA>CTA	p.P523L	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	523	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					TGCTCCATATGGACTAGAGGG	0.328000													20	138					0	0	0.000958276	0	0
ABCE1	6059	broad.mit.edu	37	4	146042490	146042490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:146042490G>A	uc003ijx.2	+	13	1650	c.1210G>A	c.(1210-1212)GTA>ATA	p.V404I	ABCE1_uc003ijy.2_Missense_Mutation_p.V404I|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	404	ABC transporter 2.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					TGCAGGAGAAGTACCAGTTCT	0.284000													18	92					0	0	0.000295444	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504785	151504785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:151504785G>A	uc003ilw.2	+	1	1709	c.604G>A	c.(604-606)GAG>AAG	p.E202K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	202					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		TCGGGTGGCCGAGGTCAAGGC	0.647000													8	39					0	0	0.000157383	0	0
LRBA	987	broad.mit.edu	37	4	151791753	151791753	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:151791753A>G	uc010ipj.2	-	20	2847	c.2373T>C	c.(2371-2373)CTT>CTC	p.L791L	LRBA_uc003ilu.3_Silent_p.L791L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	791						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TCTGTTCTATAAGAATCTACA	0.308000													7	53					0	0	8.12818e-05	0	0
PET112L	5188	broad.mit.edu	37	4	152609888	152609888	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:152609888G>T	uc003iml.2	-	10	1237	c.1225C>A	c.(1225-1227)CAA>AAA	p.Q409K		NM_004564	NP_004555	O75879	GATB_HUMAN	PET112-like precursor	409						mitochondrion	ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor|translation factor activity, nucleic acid binding				0	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)			L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	ATCACATTTTGGAAGAACTCC	0.393000													16	74					9.7654e-05	0.000572026	0.000958276	1	0
SFRP2	6423	broad.mit.edu	37	4	154702830	154702830	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:154702830T>C	uc003inv.1	-	3	902	c.661A>G	c.(661-663)ATT>GTT	p.I221V		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	221	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				AGCTTGTAAATGGTCTTGCTC	0.468000													15	75					0	0	0.000958276	0	0
NPY2R	4887	broad.mit.edu	37	4	156136139	156136139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:156136139C>T	uc003ioq.2	+	2	1543	c.1048C>T	c.(1048-1050)CAC>TAC	p.H350Y	NPY2R_uc003ior.2_Missense_Mutation_p.H350Y	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	350	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GGATGCCATTCACTCTGAGGT	0.507000													9	52					0	0	0.000442599	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156638365	156638365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:156638365G>A	uc003iov.2	+	9	2163	c.1627G>A	c.(1627-1629)GAT>AAT	p.D543N	GUCY1A3_uc010iqc.2_Missense_Mutation_p.D543N|GUCY1A3_uc003iow.2_Missense_Mutation_p.D543N|GUCY1A3_uc010iqd.2_Missense_Mutation_p.D542N|GUCY1A3_uc003iox.2_Missense_Mutation_p.D543N|GUCY1A3_uc003ioz.2_Missense_Mutation_p.D308N|GUCY1A3_uc003ioy.2_Missense_Mutation_p.D543N|GUCY1A3_uc010iqe.2_Missense_Mutation_p.D308N|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.D543N	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	543	Guanylate cyclase.				blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CAAAGAGAGTGATACTCATGC	0.433000													7	18					0	0	8.12818e-05	0	0
GRIA2	2891	broad.mit.edu	37	4	158233926	158233926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:158233926G>A	uc003ipm.3	+	4	1024	c.565G>A	c.(565-567)GAT>AAT	p.D189N	GRIA2_uc011cit.1_Missense_Mutation_p.D142N|GRIA2_uc003ipl.3_Missense_Mutation_p.D189N|GRIA2_uc003ipk.3_Missense_Mutation_p.D142N|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	189	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGACAAGAAAGATGAGATGTA	0.408000													5	24					0	0	0.00116845	0	0
GRIA2	2891	broad.mit.edu	37	4	158257893	158257893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:158257893C>T	uc003ipm.3	+	11	2297	c.1838C>T	c.(1837-1839)TCG>TTG	p.S613L	GRIA2_uc011cit.1_Missense_Mutation_p.S566L|GRIA2_uc003ipl.3_Missense_Mutation_p.S613L|GRIA2_uc003ipk.3_Missense_Mutation_p.S566L|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	613	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	TGCGATATTTCGCCAAGGTTG	0.413000													8	56					0	0	0.000442599	0	0
NPY5R	4889	broad.mit.edu	37	4	164271626	164271626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:164271626G>A	uc003iqn.2	+	4	383	c.201G>A	c.(199-201)ATG>ATA	p.M67I		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	67	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TGGCTCTCATGAAAAAGCGTA	0.388000													30	125					0	0	0.00058488	0	0
CPE	1363	broad.mit.edu	37	4	166418673	166418673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:166418673G>A	uc003irg.3	+	9	1619	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	448					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGTTGATTTTGAACTGGAGTC	0.284000													23	120					0	0	0.000878237	0	0
PALLD	23022	broad.mit.edu	37	4	169812121	169812121	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:169812121G>A	uc011cjx.1	+	11	2224	c.2013G>A	c.(2011-2013)GAG>GAA	p.E671E	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Silent_p.E671E|PALLD_uc003irv.2_Silent_p.E289E|PALLD_uc003irw.2_Silent_p.E173E	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	895					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CCTCCGATGAGGAAATTCAAG	0.443000									Pancreatic_Cancer_Familial_Clustering_of				5	39					0	0	8.12818e-05	0	0
LOC285501	285501	broad.mit.edu	37	4	178897057	178897057	+	RNA	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:178897057A>T	uc010iru.2	+	5		c.726A>T				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		AGCCTACAGAATGTGTCTGAT	0.398000													9	62					0	0	0.000442599	0	0
TRIML1	339976	broad.mit.edu	37	4	189060954	189060954	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr4:189060954T>A	uc003izm.1	+	1	357	c.242T>A	c.(241-243)CTC>CAC	p.L81H		NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	81					multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		GCCAGGCAGCTCCGGTCCCAG	0.637000													5	34					0	0	0.000602214	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	163545	163545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:163545G>A	uc003jak.2	+	11	2340	c.2290G>A	c.(2290-2292)GAG>AAG	p.E764K		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	764					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TGTAGCCACAGAGAAGAAGCT	0.642000													16	43					0	0	0.000308642	0	0
DNAH5	1767	broad.mit.edu	37	5	13766189	13766189	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:13766189T>A	uc003jfd.2	-	59	10039	c.9997A>T	c.(9997-9999)AAA>TAA	p.K3333*	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3333	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCACTGACTTTCCTTTGAAAC	0.502000									Kartagener_syndrome				12	82					0	0	0.000422831	0	0
DNAH5	1767	broad.mit.edu	37	5	13766289	13766289	+	Splice_Site	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:13766289C>T	uc003jfd.2	-	59	9940	c.9898_splice	c.e59-1	p.T3300_splice	DNAH5_uc003jfc.2_Splice_Site	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCCTGATGGTCTGGGGGATGA	0.522000									Kartagener_syndrome				7	49					0	0	8.12818e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13830721	13830721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:13830721C>T	uc003jfd.2	-	36	6088	c.6046G>A	c.(6046-6048)GGA>AGA	p.G2016R		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2016	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAATCCGTCCAAGTCCTCGG	0.408000									Kartagener_syndrome				6	43					0	0	0.00116845	0	0
PRDM9	56979	broad.mit.edu	37	5	23526713	23526713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:23526713C>T	uc003jgo.2	+	11	1698	c.1516C>T	c.(1516-1518)CCA>TCA	p.P506S		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	506					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GAAAGTGAATCCAGGGAACAC	0.438000										HNSCC(3;0.000094)			10	15					0	0	0.000673444	0	0
CDH10	1008	broad.mit.edu	37	5	24537561	24537561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:24537561C>T	uc003jgr.1	-	3	786	c.454G>A	c.(454-456)GAT>AAT	p.D152N	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	152	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TCATTGATATCATGAATTTTG	0.413000										HNSCC(23;0.051)			7	28					0	0	8.12818e-05	0	0
CDH10	1008	broad.mit.edu	37	5	24593423	24593423	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:24593423A>T	uc003jgr.1	-	2	509	c.177T>A	c.(175-177)AAT>AAA	p.N59K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	59	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGAAAAATTGATTCCACATCC	0.383000										HNSCC(23;0.051)			12	81					0	0	0.000219431	0	0
Unknown	0	broad.mit.edu	37	5	33162516	33162516	+	RNA	SNP	G	A	A	rs11537867		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:33162516G>A	uc003jhx.2	+	1		c.251G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTAAAACAAGGATCATCGATG	0.502000													5	21					0	0	0.000602214	0	0
AGXT2	64902	broad.mit.edu	37	5	35037082	35037082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:35037082C>T	uc003jjf.2	-	4	530	c.451G>A	c.(451-453)GAG>AAG	p.E151K	AGXT2_uc011com.1_Missense_Mutation_p.E151K|AGXT2_uc011con.1_Missense_Mutation_p.E59K	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	151					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GCAAGCTTCTCTGCATATTCA	0.502000													15	64					0	0	0.000566183	0	0
SPEF2	79925	broad.mit.edu	37	5	35700732	35700732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:35700732C>T	uc003jjo.2	+	16	2387	c.2276C>T	c.(2275-2277)TCC>TTC	p.S759F	SPEF2_uc003jjq.3_Missense_Mutation_p.S754F|SPEF2_uc003jjp.1_Missense_Mutation_p.S245F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	759					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCACAAAAATCCACATTGGCT	0.388000													5	27					0	0	0.000602214	0	0
CAPSL	133690	broad.mit.edu	37	5	35910584	35910584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:35910584C>T	uc003jjt.1	-	3	294	c.199G>A	c.(199-201)GGG>AGG	p.G67R	CAPSL_uc003jju.1_Missense_Mutation_p.G67R	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	67	EF-hand 1.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TCATTTAACCCTTTCATAAAT	0.318000													11	69					0	0	0.000978159	0	0
UGT3A1	133688	broad.mit.edu	37	5	35988570	35988570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:35988570C>T	uc003jjv.1	-	2	335	c.178G>A	c.(178-180)GGA>AGA	p.G60R	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.G60R|UGT3A1_uc011cor.1_Intron|UGT3A1_uc003jjy.1_Missense_Mutation_p.G6R	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	60	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAAACTTTCCACTCTGATGA	0.338000													10	24					0	0	0.000442599	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049059	36049059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:36049059G>A	uc003jjz.1	-	4	868	c.775C>T	c.(775-777)CGA>TGA	p.R259*	UGT3A2_uc011cos.1_Nonsense_Mutation_p.R225*|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	259	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCAGAGGTCGAGCAAAATCA	0.423000													5	39					0	0	0.000602214	0	0
UGT3A2	167127	broad.mit.edu	37	5	36052075	36052075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:36052075C>T	uc003jjz.1	-	3	301	c.208G>A	c.(208-210)GAA>AAA	p.E70K	UGT3A2_uc011cos.1_Missense_Mutation_p.E36K|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	70	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GATTTTTCTTCCTTTTTAAAA	0.284000													5	40					0	0	0.000157383	0	0
RANBP3L	202151	broad.mit.edu	37	5	36257607	36257607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:36257607C>T	uc003jkh.2	-	9	1214	c.721G>A	c.(721-723)GAA>AAA	p.E241K	RANBP3L_uc011cow.1_Missense_Mutation_p.E266K	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	241					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			AATGGTTTTTCCTTGGCATAT	0.308000													7	67					0	0	0.000157383	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427349	38427349	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:38427349C>T	uc003jlc.1	+	14	2373	c.2049C>T	c.(2047-2049)GTC>GTT	p.V683V	EGFLAM_uc003jlb.1_Silent_p.V683V|EGFLAM_uc003jle.1_Silent_p.V449V|EGFLAM_uc003jlf.1_Silent_p.V49V	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	683	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGACCGGTGTCCTCAGGTGAG	0.502000													10	91					0	0	0.000151284	0	0
OSMR	9180	broad.mit.edu	37	5	38881759	38881759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:38881759C>T	uc003jln.1	+	4	678	c.311C>T	c.(310-312)CCT>CTT	p.P104L	OSMR_uc003jlm.1_Missense_Mutation_p.P104L	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	104	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TCTGAGCTCCCTTTGGAATGT	0.468000													6	59					0	0	0.00116845	0	0
C7	730	broad.mit.edu	37	5	40947853	40947853	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:40947853C>T	uc003jmh.2	+	8	1002	c.888C>T	c.(886-888)ATC>ATT	p.I296I	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	296	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GAAGATTAATCGACCAGTACG	0.408000													6	43					0	0	0.00116845	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41010127	41010127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:41010127C>T	uc003jmj.3	-	31	3680	c.3190G>A	c.(3190-3192)GAA>AAA	p.E1064K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E619K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1064							binding			ovary(6)|central_nervous_system(2)	8						AAACTTTCTTCTTTTTGTCTG	0.403000													8	40					0	0	0.000274275	0	0
DDX4	54514	broad.mit.edu	37	5	55075797	55075797	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:55075797C>T	uc003jqg.3	+	8	474	c.400C>T	c.(400-402)CGA>TGA	p.R134*	DDX4_uc010ivz.2_Nonsense_Mutation_p.R114*|DDX4_uc003jqh.3_Intron|DDX4_uc003jqj.2_Intron	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	134	Gly-rich.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TATAGGCTATCGAGATGGAAA	0.393000													5	30					0	0	0.000602214	0	0
MARVELD2	153562	broad.mit.edu	37	5	68737430	68737430	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:68737430A>C	uc003jwq.2	+	7	1685	c.1626A>C	c.(1624-1626)AGA>AGC	p.R542S	MARVELD2_uc010ixf.2_Missense_Mutation_p.R530S|MARVELD2_uc003jwr.1_Intron|MARVELD2_uc003jws.1_RNA	NM_001038603	NP_001033692	Q8N4S9	MALD2_HUMAN	MARVEL domain containing 2 isoform 1	542	Potential.|Cytoplasmic (Potential).				sensory perception of sound	integral to membrane|tight junction					0		Lung NSC(167;0.000937)|Prostate(74;0.0187)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;7.31e-57)|Epithelial(20;1.05e-52)|all cancers(19;2.63e-48)|Lung(70;0.0183)		TAAAGCAAAGAATTCAAGAAT	0.244000													11	52					0	0	0.000978159	0	0
AGGF1	55109	broad.mit.edu	37	5	76331503	76331504	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:76331503_76331504CC>AA	uc003ket.2	+	3	811_812	c.451_452CC>AA	c.(451-453)CCT>AAT	p.P151N	AGGF1_uc003kes.2_Missense_Mutation_p.P151N|AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	151					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		TGATGCTTACCCTGGTACCGAT	0.342000													13	404					0	0	6.4e-05	0	0
DMGDH	29958	broad.mit.edu	37	5	78347271	78347271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:78347271G>A	uc003kfs.2	-	5	590	c.584C>T	c.(583-585)CCT>CTT	p.P195L	DMGDH_uc011cte.1_Missense_Mutation_p.P45L|DMGDH_uc011ctf.1_Intron|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	195					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TAGAGAATAAGGATCAATGTG	0.388000													7	30					0	0	8.12818e-05	0	0
CMYA5	202333	broad.mit.edu	37	5	79027156	79027156	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:79027156C>T	uc003kgc.2	+	2	2640	c.2568C>T	c.(2566-2568)TTC>TTT	p.F856F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	856						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AACACTCTTTCCCACCACACA	0.488000													8	25					0	0	0.000274275	0	0
GPR98	84059	broad.mit.edu	37	5	90052371	90052371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:90052371C>T	uc003kju.2	+	56	11777	c.11681C>T	c.(11680-11682)CCC>CTC	p.P3894L	GPR98_uc003kjt.2_Missense_Mutation_p.P1600L|GPR98_uc003kjv.2_Missense_Mutation_p.P1494L	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3894	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTGCGGAGGCCCGGAATGGAA	0.413000													15	74					0	0	0.000219431	0	0
MCTP1	79772	broad.mit.edu	37	5	94288923	94288923	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:94288923C>T	uc003kkx.2	-	3	981	c.981G>A	c.(979-981)AAG>AAA	p.K327K	MCTP1_uc003kkv.2_Silent_p.K106K|MCTP1_uc003kkw.2_Silent_p.K106K|MCTP1_uc003kkz.2_5'UTR	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	327	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		AATGGCTCACCTTTATATACA	0.358000													7	15					0	0	0.000673444	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834543	101834543	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:101834543G>A	uc003knn.2	-	1	178	c.6C>T	c.(4-6)TTC>TTT	p.F2F	SLCO6A1_uc003kno.2_Silent_p.F2F|SLCO6A1_uc003knp.2_Silent_p.F2F|SLCO6A1_uc003knq.2_Silent_p.F2F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	2	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGACGCCTACGAACATGGCTC	0.711000													11	81					0	0	0.00136819	0	0
WDR36	134430	broad.mit.edu	37	5	110456205	110456205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:110456205C>T	uc003kpd.2	+	18	2201	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	695	WD 9.				response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TCCAATATTTCCCTGTATTCA	0.328000													11	57					0	0	0.000151284	0	0
CDO1	1036	broad.mit.edu	37	5	115151983	115151983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:115151983C>T	uc003krg.2	-	1	423	c.112G>A	c.(112-114)GAA>AAA	p.E38K		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	38					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	TCGTAGGCTTCCATGATGGCC	0.617000													16	75					0	0	0.000566183	0	0
FAM170A	340069	broad.mit.edu	37	5	118969896	118969896	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:118969896C>T	uc003ksm.2	+	3	663	c.453C>T	c.(451-453)TCC>TCT	p.S151S	FAM170A_uc003ksl.2_Silent_p.S151S|FAM170A_uc003ksn.2_Silent_p.S151S|FAM170A_uc003kso.2_Silent_p.S104S	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	151						intracellular	zinc ion binding			skin(1)	1						CTTTGGAGTCCTTAGAAAAGC	0.478000													14	59					0	0	0.000422831	0	0
FAM170A	340069	broad.mit.edu	37	5	118970319	118970319	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:118970319G>A	uc003ksm.2	+	3	1086	c.876G>A	c.(874-876)GAG>GAA	p.E292E	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Silent_p.E292E|FAM170A_uc003kso.2_Silent_p.E245E	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	292	Glu-rich.					intracellular	zinc ion binding	p.E292K(1)		skin(1)	1						aggaggaagagaaaccagaag	0.323000													7	55					0	0	0.000157383	0	0
FBN2	2201	broad.mit.edu	37	5	127622428	127622428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:127622428C>T	uc003kuu.2	-	55	7433	c.6994G>A	c.(6994-6996)GAT>AAT	p.D2332N		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2332	EGF-like 39; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CCTTCTCCATCGGGCCTTCGG	0.507000													6	26					0	0	0.00116845	0	0
GDF9	2661	broad.mit.edu	37	5	132200017	132200017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:132200017G>A	uc003kxz.1	-	1	461	c.209C>T	c.(208-210)TCT>TTT	p.S70F	GDF9_uc011cxj.1_Intron|UQCRQ_uc003kya.1_5'Flank	NM_005260	NP_005251	O60383	GDF9_HUMAN	growth differentiation factor 9 precursor	70					female gamete generation|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			skin(1)	1		all_cancers(142;0.105)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCGCCCAACAGATAGAACTTT	0.512000													13	58					0	0	0.000151284	0	0
PHF15	23338	broad.mit.edu	37	5	133914418	133914418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:133914418G>A	uc003kzo.1	+	11	1963	c.1784G>A	c.(1783-1785)CGA>CAA	p.R595Q	PHF15_uc011cxt.1_Missense_Mutation_p.R639Q|PHF15_uc003kzk.2_Missense_Mutation_p.R655Q|PHF15_uc003kzl.2_3'UTR|PHF15_uc003kzm.2_Missense_Mutation_p.R596Q|PHF15_uc003kzn.2_3'UTR	NM_015288	NP_056103	Q9NQC1	JADE2_HUMAN	PHD finger protein 15	595					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGGAAGGCCCGAGGCCGCACC	0.652000													5	14					0	0	0.000602214	0	0
PCDHA4	56144	broad.mit.edu	37	5	140186943	140186943	+	Silent	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140186943G>T	uc003lhi.2	+	1	272	c.171G>T	c.(169-171)GCG>GCT	p.A57A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.A57A|PCDHA4_uc011daa.1_Silent_p.A57A	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	57	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGCTGGCGGAGCTGGTGC	0.637000													23	75					2.21704e-12	1.31717e-11	0.000375601	1	0
PCDHA5	56143	broad.mit.edu	37	5	140202640	140202640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140202640G>A	uc003lhl.2	+	1	1280	c.1280G>A	c.(1279-1281)CGG>CAG	p.R427Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.R427Q|PCDHA5_uc003lhj.1_Missense_Mutation_p.R427Q	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	427	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGACCGCGCGGGACGGGGGC	0.642000													23	93					0	0	0.000586117	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208003	140208003	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140208003C>T	uc003lho.2	+	1	354	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.I109I|PCDHA6_uc011dab.1_Silent_p.I109I	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	109	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAGGTGATCGTGGACAGGC	0.557000													26	158					0	0	0.000692331	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209115	140209115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140209115G>A	uc003lho.2	+	1	1466	c.1439G>A	c.(1438-1440)CGA>CAA	p.R480Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.R480Q|PCDHA6_uc011dab.1_Missense_Mutation_p.R480Q	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	480	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTCTGCGCGAGACGCGGAC	0.647000													18	73					0	0	0.000958276	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209875	140209875	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140209875G>A	uc003lho.2	+	1	2226	c.2199G>A	c.(2197-2199)ACG>ACA	p.T733T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Silent_p.T733T	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	733	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGTGCACGGCGGACAAGC	0.687000													7	37					0	0	8.12818e-05	0	0
PCDHA7	56141	broad.mit.edu	37	5	140215568	140215568	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140215568C>T	uc003lhq.2	+	1	1600	c.1600C>T	c.(1600-1602)CAG>TAG	p.Q534*	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Nonsense_Mutation_p.Q534*	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	534	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGCAGTTCCAGGTGAGCGC	0.682000													27	105					0	0	0.00106085	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249718	140249718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140249718G>A	uc003lia.2	+	1	1888	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.D344N	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	344	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACACCAACGATAACTCTCC	0.512000													6	44					0	0	0.00116845	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307121	140307121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140307121G>A	uc003lih.2	+	1	820	c.644G>A	c.(643-645)GGA>GAA	p.G215E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.G215E	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	215	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCGCTCAGGAGACGCACAA	0.587000													10	36					0	0	0.000442599	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475257	140475257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140475257C>T	uc003lil.2	+	1	1021	c.883C>T	c.(883-885)CGA>TGA	p.R295*	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	295	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAAAACGTTTCGATTAAGTGC	0.428000													20	66					0	0	0.00121646	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516594	140516594	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140516594C>G	uc003liq.2	+	1	1795	c.1578C>G	c.(1576-1578)TTC>TTG	p.F526L		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	526	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCAGGCGTTCGAGTTCCGCG	0.687000													14	55					0	0	0.000219431	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558106	140558106	+	Missense_Mutation	SNP	G	A	A	rs150947375		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140558106G>A	uc011dai.1	+	1	677	c.491G>A	c.(490-492)GGC>GAC	p.G164D	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	164	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTAGATATAGGCCAAAACAAT	0.458000													14	84					0	0	0.00074312	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562564	140562564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140562564G>A	uc003liv.2	+	1	1585	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	144	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAAAATACCGGAAAACAGTCC	0.388000													7	46					0	0	8.12818e-05	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567945	140567945	+	Silent	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140567945A>C	uc003liw.1	+	1	1053	c.1053A>C	c.(1051-1053)TCA>TCC	p.S351S		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	351	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCATATCATCACTTTCCAACT	0.393000													9	57					0	0	0.000274275	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568886	140568886	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140568886C>T	uc003liw.1	+	3	1995	c.1995C>T	c.(1993-1995)GGC>GGT	p.G665G		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	665	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGTGGACGGCTTCTCCCAGC	0.692000													16	117					0	0	0.000958276	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580416	140580416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140580416C>T	uc003liy.2	+	1	1069	c.1069C>T	c.(1069-1071)CCA>TCA	p.P357S	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	357	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGTCCAATCCCAGAAAATAC	0.423000													10	74					0	0	0.000673444	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626826	140626826	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140626826C>T	uc003lje.2	+	1	1680	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	560	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGCTGTACC	0.721000													6	46					0	0	0.000157383	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711128	140711128	+	Missense_Mutation	SNP	C	T	T	rs145926133		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140711128C>T	uc003lji.1	+	1	877	c.877C>T	c.(877-879)CGT>TGT	p.R293C	PCDHGA1_uc011dan.1_Missense_Mutation_p.R293C	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	293	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAAATATTTCGTTTAGATTC	0.428000													7	35					0	0	8.12818e-05	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768692	140768692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140768692C>T	uc003lkc.1	+	1	1241	c.1241C>T	c.(1240-1242)CCA>CTA	p.P414L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.P414L	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	414	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCAGAATCCAGAGTACAAT	0.433000													19	122					0	0	0.000958276	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801557	140801557	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140801557A>T	uc003lkq.1	+	1	1021	c.763A>T	c.(763-765)AAC>TAC	p.N255Y	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.N255Y|PCDHGA11_uc003lkp.1_Missense_Mutation_p.N255Y	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	255	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCCAGAAAACATCAGCTC	0.483000													26	128					0	0	0.00106085	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140870576	140870576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:140870576C>T	uc003lla.1	+	1	1769	c.1769C>T	c.(1768-1770)ACC>ATC	p.T590I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Missense_Mutation_p.T590I	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	590	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCTTGGTCACCAAGGTGACA	0.607000													5	48					0	0	0.000602214	0	0
KCTD16	57528	broad.mit.edu	37	5	143853618	143853618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:143853618C>T	uc003lnm.1	+	4	1857	c.1228C>T	c.(1228-1230)CGG>TGG	p.R410W	KCTD16_uc003lnn.1_Missense_Mutation_p.R410W	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	410						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			AATTCCAGATCGGTTTCCTGA	0.383000													6	52					0	0	8.12818e-05	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147024427	147024427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:147024427C>T	uc003loq.1	-	6	1451	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E315K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E357K|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E357K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	357	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGAATTTTCCTTGGTAACG	0.408000													17	43					0	0	0.00152264	0	0
MIR584	693169	broad.mit.edu	37	5	148441898	148441898	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:148441898G>A	hsa-mir-584|MI0003591	-			c.75G>A			SH3TC2_uc003lpp.1_Intron|SH3TC2_uc003lpt.2_Intron|SH3TC2_uc010jgx.2_Intron|SH3TC2_uc003lpu.2_Intron|SH3TC2_uc003lpv.1_Intron|SH3TC2_uc011dbz.1_Intron|SH3TC2_uc003lpw.1_Intron|uc003lpx.1_5'Flank																	0						agaccaaccagcctggttggc	0.254000													8	18					0	0	0.000157383	0	0
TCOF1	6949	broad.mit.edu	37	5	149755020	149755020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:149755020C>T	uc003lry.2	+	11	1715	c.1607C>T	c.(1606-1608)GCC>GTC	p.A536V	TCOF1_uc003lrw.2_Missense_Mutation_p.A536V|TCOF1_uc011dch.1_Missense_Mutation_p.A536V|TCOF1_uc003lrz.2_Missense_Mutation_p.A536V|TCOF1_uc003lrx.2_Missense_Mutation_p.A459V|TCOF1_uc003lsa.2_Missense_Mutation_p.A459V|TCOF1_uc011dci.1_Missense_Mutation_p.A25V	NM_001135243	NP_001128715	Q13428	TCOF_HUMAN	Treacher Collins-Franceschetti syndrome 1	536					skeletal system development	nucleolus	protein binding|transporter activity			ovary(2)|large_intestine(1)	3		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCCCCTCAGCCCAGGTGGGG	0.662000													6	35					0	0	0.00116845	0	0
GM2A	2760	broad.mit.edu	37	5	150646988	150646988	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:150646988C>T	uc003ltr.3	+	4	723	c.558C>T	c.(556-558)ATC>ATT	p.I186I	GM2A_uc011dcs.1_RNA|GM2A_uc011dcr.1_Intron|GM2A_uc003ltu.1_5'Flank	NM_000405	NP_000396	P17900	SAP3_HUMAN	GM2 ganglioside activator precursor	186						lysosome|nucleolus	sphingolipid activator protein activity				0		Medulloblastoma(196;0.091)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCATCAAGATCGCTGCCTCTC	0.557000													5	26					0	0	0.00116845	0	0
FAT2	2196	broad.mit.edu	37	5	150924410	150924410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:150924410G>A	uc003lue.3	-	9	6291	c.6278C>T	c.(6277-6279)TCT>TTT	p.S2093F	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2093	Extracellular (Potential).|Cadherin 18.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ATCAGTGGCAGATACCTGAAA	0.443000													15	59					0	0	0.000566183	0	0
GRIA1	2890	broad.mit.edu	37	5	153190682	153190682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:153190682G>A	uc003lva.3	+	16	2983	c.2618G>A	c.(2617-2619)GGA>GAA	p.G873E	GRIA1_uc003luy.3_Missense_Mutation_p.G873E|GRIA1_uc003luz.3_Missense_Mutation_p.G778E|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.G793E|GRIA1_uc011dcx.1_Missense_Mutation_p.G804E|GRIA1_uc011dcy.1_Missense_Mutation_p.G883E|GRIA1_uc011dcz.1_Missense_Mutation_p.G883E	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	873	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCGGCAGTGGAGAGAATGGT	0.582000													4	17					0	0	0.000602214	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533972	156533972	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:156533972C>T	uc003lwk.1	-	2	204	c.60G>A	c.(58-60)AGG>AGA	p.R20R	HAVCR2_uc003lwl.2_Silent_p.R20R	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	20						integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTTCTGAGGACCCTGCATAGA	0.547000													26	130					0	0	0.000586117	0	0
GABRB2	2561	broad.mit.edu	37	5	160721399	160721399	+	Missense_Mutation	SNP	C	T	T	rs148772321		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:160721399C>T	uc003lys.1	-	11	1446	c.1228G>A	c.(1228-1230)GAG>AAG	p.E410K	GABRB2_uc011deh.1_Missense_Mutation_p.E211K|GABRB2_uc003lyr.1_Missense_Mutation_p.E372K|GABRB2_uc003lyt.1_Missense_Mutation_p.E372K|GABRB2_uc010jiu.1_Missense_Mutation_p.E309K	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	410	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TTTTTTATCTCGAGAGTGCTC	0.463000													6	34					0	0	0.000274275	0	0
GABRB2	2561	broad.mit.edu	37	5	160757949	160757949	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:160757949T>A	uc003lys.1	-	9	1236	c.1018A>T	c.(1018-1020)AAA>TAA	p.K340*	GABRB2_uc011deh.1_Nonsense_Mutation_p.K179*|GABRB2_uc003lyr.1_Nonsense_Mutation_p.K340*|GABRB2_uc003lyt.1_Nonsense_Mutation_p.K340*|GABRB2_uc010jiu.1_Nonsense_Mutation_p.K277*	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	340	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TCAGCTGCTTTCTTTTGGCGT	0.498000													12	84					0	0	0.000978159	0	0
GABRA6	2559	broad.mit.edu	37	5	161116329	161116329	+	Silent	SNP	C	T	T	rs139264126	by1000genomes	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:161116329C>T	uc003lyu.2	+	5	854	c.516C>T	c.(514-516)CTC>CTT	p.L172L	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	172	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTTGTCCACTCAAGTTTGGGA	0.393000										TCGA Ovarian(5;0.080)			7	61					0	0	8.12818e-05	0	0
GABRA6	2559	broad.mit.edu	37	5	161116664	161116664	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:161116664C>T	uc003lyu.2	+	6	890	c.552C>T	c.(550-552)ATC>ATT	p.I184I	GABRA6_uc003lyv.2_5'UTR	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	184	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AAAGTGAAATCATATATACGT	0.343000										TCGA Ovarian(5;0.080)			4	16					0	0	0.00024832	0	0
ODZ2	57451	broad.mit.edu	37	5	167517605	167517605	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:167517605G>A	uc010jjd.2	+	8	1542	c.1542G>A	c.(1540-1542)GGG>GGA	p.G514G	ODZ2_uc003lzq.2_Silent_p.G393G|ODZ2_uc003lzr.3_Silent_p.G282G|uc003lzs.1_Intron	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTCTGGACGGGAAGGAGAAGT	0.547000													5	42					0	0	0.000157383	0	0
ODZ2	57451	broad.mit.edu	37	5	167645536	167645536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:167645536C>T	uc010jjd.2	+	23	4613	c.4613C>T	c.(4612-4614)TCA>TTA	p.S1538L	ODZ2_uc003lzr.3_Missense_Mutation_p.S1308L|ODZ2_uc003lzt.3_Missense_Mutation_p.S911L|ODZ2_uc010jje.2_Missense_Mutation_p.S802L	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AATTCCCCATCATCCTTAGCT	0.493000													22	107					0	0	0.00047179	0	0
FBLL1	345630	broad.mit.edu	37	5	167957080	167957080	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:167957080G>C	uc011dep.1	+	1	499	c.286G>C	c.(286-288)GAC>CAC	p.D96H		NR_024356				RecName: Full=rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1;          EC=2.1.1.-;												0						CCATGTCTCCGACATCATTGG	0.657000													2	1					0	0	6.4e-05	0	0
FOXI1	2299	broad.mit.edu	37	5	169535321	169535321	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:169535321C>T	uc003mai.3	+	2	888	c.843C>T	c.(841-843)TTC>TTT	p.F281F	FOXI1_uc003maj.3_Intron	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	281					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTAACAGCTTCCTTTCCTCTA	0.642000									Pendred_syndrome				12	46					0	0	0.00136819	0	0
ZNF354B	117608	broad.mit.edu	37	5	178310136	178310136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:178310136C>T	uc003mjl.2	+	5	909	c.683C>T	c.(682-684)TCC>TTC	p.S228F	ZNF354B_uc003mjm.2_Missense_Mutation_p.S228F	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	228	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CACAATTCATCCCTTCGTAAA	0.313000													26	135					0	0	0.00127121	0	0
GRM6	2916	broad.mit.edu	37	5	178408731	178408731	+	Missense_Mutation	SNP	C	T	T	rs145110689		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:178408731C>T	uc003mjr.2	-	10	2740	c.2561G>A	c.(2560-2562)CGA>CAA	p.R854Q	GRM6_uc003mjq.2_Missense_Mutation_p.R257Q	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	854	Cytoplasmic (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GCTCCGCTTTCGCTTCTGCAC	0.612000													14	56					0	0	0.000219431	0	0
RNF130	55819	broad.mit.edu	37	5	179467603	179467603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:179467603G>A	uc003mll.1	-	2	699	c.292C>T	c.(292-294)CCT>TCT	p.P98S	RNF130_uc003mlm.1_Missense_Mutation_p.P98S	NM_018434	NP_060904	Q86XS8	GOLI_HUMAN	ring finger protein 130 precursor	98	Extracellular (Potential).				apoptosis	cytoplasm|integral to membrane|nucleus	ubiquitin-protein ligase activity|zinc ion binding			lung(2)|ovary(1)	3	all_cancers(89;5.49e-05)|all_epithelial(37;1.94e-05)|Renal(175;0.000159)|Lung NSC(126;0.00118)|all_lung(126;0.00212)	all_cancers(40;0.0294)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATATTAGGAGGGACAAAGAAC	0.413000													8	42					0	0	0.000442599	0	0
FLT4	2324	broad.mit.edu	37	5	180051011	180051011	+	Missense_Mutation	SNP	G	A	A	rs146167161	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr5:180051011G>A	uc003mma.3	-	11	1551	c.1472C>T	c.(1471-1473)GCG>GTG	p.A491V	FLT4_uc003mlz.3_Missense_Mutation_p.A491V|FLT4_uc003mmb.1_Missense_Mutation_p.A24V|FLT4_uc011dgy.1_Missense_Mutation_p.A491V	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	491	Ig-like C2-type 5.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CGTGGTCACCGCCCTCCAGTC	0.637000									Congenital_Hereditary_Lymphedema				7	43					0	0	0.000157383	0	0
MYLK4	340156	broad.mit.edu	37	6	2749435	2749435	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:2749435C>T	uc003mty.3	-	2	391	c.94G>A	c.(94-96)GAG>AAG	p.E32K		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	32							ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TTCACTTTCTCCACCTCTTCC	0.383000													16	65					0	0	0.00074312	0	0
DSP	1832	broad.mit.edu	37	6	7585740	7585740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:7585740G>A	uc003mxp.1	+	24	8524	c.8245G>A	c.(8245-8247)GAA>AAA	p.E2749K	DSP_uc003mxq.1_Missense_Mutation_p.E2150K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2749	Plectin 16.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		AAGCACCGAAGAAGCCATCCG	0.557000													13	75					0	0	0.000219431	0	0
NUP153	9972	broad.mit.edu	37	6	17665598	17665598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:17665598G>A	uc003ncd.1	-	9	1287	c.1087C>T	c.(1087-1089)CCT>TCT	p.P363S	NUP153_uc011dje.1_Missense_Mutation_p.P363S|NUP153_uc010jpl.1_Missense_Mutation_p.P363S	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	363					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			CTCTGAACAGGAGGATATTGA	0.338000													12	85					0	0	0.000219431	0	0
SLC17A3	10786	broad.mit.edu	37	6	25862519	25862519	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:25862519A>T	uc003nfi.3	-	3	355	c.245T>A	c.(244-246)GTG>GAG	p.V82E	SLC17A3_uc003nfk.3_Missense_Mutation_p.V82E|SLC17A3_uc011djz.1_Missense_Mutation_p.V82E|SLC17A3_uc011dka.1_Missense_Mutation_p.V82E	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	82					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						AACAGGCAGCACCTCAGAGGA	0.428000													9	32					0	0	0.000673444	0	0
BTN3A1	11119	broad.mit.edu	37	6	26413477	26413477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:26413477G>A	uc003nhv.2	+	10	1467	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K	BTN3A1_uc011dkj.1_3'UTR|BTN3A1_uc011dkk.1_Missense_Mutation_p.E315K|BTN3A1_uc010jqj.2_3'UTR	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	367	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCGTGCCAAGGAGCCCCAGGA	0.507000													10	79					0	0	0.000442599	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27834654	27834654	+	Silent	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:27834654G>C	uc003njx.2	-	1	706	c.654C>G	c.(652-654)GCC>GCG	p.A218A		NM_005322	NP_005313	P16401	H15_HUMAN	histone cluster 1, H1b	218				Missing (in Ref. 5; AA sequence).	nucleosome assembly	nucleosome|nucleus	DNA binding	p.A218A(1)		large_intestine(2)|lung(1)	3						CCGCCTTCTTGGCCTTTGCAG	0.527000													7	32					0	0	8.12818e-05	0	0
OR2B3	442184	broad.mit.edu	37	6	29054815	29054815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:29054815G>A	uc003nlx.2	-	1	276	c.211C>T	c.(211-213)CTC>TTC	p.L71F		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						GTATAGCAGAGATCTAAGATG	0.423000													10	64					0	0	0.000442599	0	0
HLA-G	3135	broad.mit.edu	37	6	29797309	29797309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:29797309G>A	uc003nnw.2	+	5	912	c.734G>A	c.(733-735)GGG>GAG	p.G245E	HLA-G_uc011dmb.1_Missense_Mutation_p.G217E|HLA-G_uc003raj.3_Missense_Mutation_p.G250E|HLA-G_uc003nnz.3_Missense_Mutation_p.G153E|HLA-G_uc010jrn.2_Intron|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_5'Flank	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	245	Extracellular (Potential).|Ig-like C1-type.|Alpha-3.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						CAGCGGGATGGGGAGGACCAG	0.632000													10	65					0	0	0.00136819	0	0
KIAA1949	170954	broad.mit.edu	37	6	30647097	30647097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:30647097C>T	uc003nra.2	-	3	1912	c.1681G>A	c.(1681-1683)GAG>AAG	p.E561K	KIAA1949_uc003nrb.3_Missense_Mutation_p.E561K	NM_001134870	NP_001128342	Q6NYC8	PHTNS_HUMAN	phostensin	561						cytoplasm|cytoskeleton	actin binding				0						CCCAGCTCCTCCAGTACCGAA	0.627000													8	32					0	0	0.000442599	0	0
BAT3	7917	broad.mit.edu	37	6	31613319	31613319	+	Silent	SNP	C	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:31613319C>A	uc003nvg.3	-	9	1313	c.999G>T	c.(997-999)CTG>CTT	p.L333L	BAT3_uc003nvf.3_Silent_p.L327L|BAT3_uc003nvh.3_Silent_p.L327L|BAT3_uc003nvi.3_Silent_p.L327L|BAT3_uc011dnw.1_Silent_p.L327L|BAT3_uc011dnx.1_Silent_p.L327L|BAT3_uc003nvj.1_Silent_p.L327L	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	333	4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						AGGTGTTGCCCAGCAGTCGCA	0.587000													9	248					0.000978159	0.00569773	0.000978159	1	0
SLC44A4	80736	broad.mit.edu	37	6	31844842	31844842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:31844842C>T	uc010jti.2	-	2	124	c.58G>A	c.(58-60)GAC>AAC	p.D20N	SLC44A4_uc011dol.1_5'UTR|SLC44A4_uc011dom.1_Missense_Mutation_p.D20N	NM_025257	NP_079533	Q53GD3	CTL4_HUMAN	choline transporter-like protein 4	20	Cytoplasmic (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4					Choline(DB00122)	AAGGAGGGGTCGTATTTGACT	0.577000													25	176					0	0	0.00106085	0	0
C2	717	broad.mit.edu	37	6	31903790	31903791	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:31903790_31903791CG>AT	uc003nyf.2	+	7	1204_1205	c.940_941CG>AT	c.(940-942)CGG>ATG	p.R314M	C2_uc003nyc.2_Missense_Mutation_p.R101M|C2_uc011doo.1_Missense_Mutation_p.R68M|C2_uc011dop.1_Intron|C2_uc010jtk.2_Missense_Mutation_p.R182M|C2_uc011doq.1_Missense_Mutation_p.R285M|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	314	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGACAACTCCCGGGATATGACT	0.505000													7	316					0	0	6.4e-05	0	0
STK19	8859	broad.mit.edu	37	6	31940123	31940123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:31940123G>A	uc003nyv.2	+	2	393	c.265G>A	c.(265-267)GAC>AAC	p.D89N	DOM3Z_uc003nyo.1_5'Flank|DOM3Z_uc003nyp.1_5'Flank|DOM3Z_uc003nyq.1_5'Flank|DOM3Z_uc003nyr.1_5'Flank|DOM3Z_uc003nys.1_5'Flank|DOM3Z_uc010jtl.1_5'Flank|STK19_uc003nyt.2_Missense_Mutation_p.D46N|DOM3Z_uc003nyu.1_5'Flank|STK19_uc011dow.1_Missense_Mutation_p.D89N|STK19_uc011dox.1_Missense_Mutation_p.D46N|STK19_uc003nyw.2_Missense_Mutation_p.D89N|STK19_uc010jtn.1_RNA	NM_032454	NP_115830	P49842	STK19_HUMAN	serine/threonine kinase 19 isoform 2	89			D -> N (in a metastatic melanoma sample; somatic mutation).			nucleus	ATP binding|protein binding|protein serine/threonine kinase activity	p.D89N(2)		skin(4)	4						TGCGCCGGAAGACCCTATTTT	0.582000													19	64					0	0	0.000229342	0	0
TNXB	7148	broad.mit.edu	37	6	32016248	32016249	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32016248_32016249GG>AA	uc003nzl.2	-	29	10132_10133	c.9930_9931CC>TT	c.(9928-9933)CTCCGA>CTTTGA	p.R3311*	TNXB_uc003nzg.1_5'Flank|TNXB_uc003nzh.1_5'Flank	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3358	Fibronectin type-III 25.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGACCGCTCGGAGGTCTCCGC	0.668000													23	181					0	0	6.4e-05	0	0
TNXB	7148	broad.mit.edu	37	6	32065690	32065690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32065690G>A	uc003nzl.2	-	2	488	c.286C>T	c.(286-288)CTT>TTT	p.L96F	TNXB_uc010jts.1_Missense_Mutation_p.L95F|ATF6B_uc003nzm.1_3'UTR	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	96					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCTGAAGCAAGGACTGGGGGC	0.612000													27	195					0	0	0.000878237	0	0
ATF6B	1388	broad.mit.edu	37	6	32088853	32088853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32088853G>A	uc003nzn.2	-	7	646	c.613C>T	c.(613-615)CCT>TCT	p.P205S	ATF6B_uc003nzo.2_Missense_Mutation_p.P202S|ATF6B_uc003nzp.1_5'Flank|ATF6B_uc011dpg.1_Missense_Mutation_p.P139S|ATF6B_uc011dph.1_Missense_Mutation_p.P205S	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	205	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CATCCTGAAGGGGACAGGGAC	0.547000													29	156					0	0	0.000409698	0	0
PSMB8	5696	broad.mit.edu	37	6	32810726	32810726	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32810726G>A	uc003oce.2	-	2	331	c.288C>T	c.(286-288)TCC>TCT	p.S96S	PSMB8_uc003ocf.2_Silent_p.S92S|PSMB8_uc011dqh.1_Silent_p.S96S	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	96					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						CACTAATGTAGGACCCAGCTG	0.547000													5	37					0	0	0.000602214	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32903125	32903125	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32903125A>C	uc003ocl.1	-	5	1002	c.769T>G	c.(769-771)TCA>GCA	p.S257A	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_RNA|HLA-DMB_uc010jud.1_Intron|HLA-DMB_uc010jue.1_Missense_Mutation_p.S87A|HLA-DMB_uc010juf.1_Intron	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	257	Cytoplasmic (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						TTACCTTCTGAATAATTGGAC	0.413000													8	31					0	0	0.000157383	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32903127	32903127	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:32903127T>A	uc003ocl.1	-	5	1000	c.767A>T	c.(766-768)TAT>TTT	p.Y256F	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_RNA|HLA-DMB_uc010jud.1_Intron|HLA-DMB_uc010jue.1_Missense_Mutation_p.Y86F|HLA-DMB_uc010juf.1_Intron	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	256	Cytoplasmic (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						ACCTTCTGAATAATTGGACCC	0.418000													8	32					0	0	0.000157383	0	0
KIFC1	3833	broad.mit.edu	37	6	33374649	33374649	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:33374649C>T	uc003oef.3	+	10	2424	c.1974C>T	c.(1972-1974)TCC>TCT	p.S658S	KIFC1_uc011drf.1_Silent_p.S650S	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	658					blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						GCTTTGCCTCCAAGGTGCGAT	0.517000													5	35					0	0	0.000602214	0	0
C6orf106	64771	broad.mit.edu	37	6	34622480	34622480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:34622480C>T	uc003ojr.2	-	2	480	c.235G>A	c.(235-237)GAA>AAA	p.E79K	C6orf106_uc003ojs.2_Missense_Mutation_p.E79K	NM_024294	NP_077270	Q9H6K1	CF106_HUMAN	chromosome 6 open reading frame 106 isoform a	79										skin(2)|ovary(1)	3						GTGACATCTTCAACAAAGGAC	0.438000													12	78					0	0	0.000978159	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34831899	34831900	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:34831899_34831900GG>AA	uc003oju.3	+	15	3570_3571	c.3336_3337GG>AA	c.(3334-3339)TTGGAT>TTAAAT	p.D1113N	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_Intron	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	1113										ovary(3)	3						GTGTCTCATTGGATAGCAGTGG	0.525000													19	109					0	0	6.4e-05	0	0
SCUBE3	222663	broad.mit.edu	37	6	35210459	35210459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:35210459G>A	uc003okf.1	+	14	1601	c.1595G>A	c.(1594-1596)CGG>CAG	p.R532Q	SCUBE3_uc003okg.1_Missense_Mutation_p.R531Q|SCUBE3_uc003okh.1_Missense_Mutation_p.R419Q	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	532					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GACTCCTCTCGGAAGGGCAAG	0.622000													12	84					0	0	0.000219431	0	0
C6orf81	221481	broad.mit.edu	37	6	35715079	35715079	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:35715079G>A	uc003ola.2	+	4	594	c.567G>A	c.(565-567)TGG>TGA	p.W189*	C6orf81_uc003olb.1_Nonsense_Mutation_p.W162*	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	162							binding			ovary(1)	1						CCACCATCTGGGACACGGAAC	0.493000													8	67					0	0	0.000978159	0	0
CPNE5	57699	broad.mit.edu	37	6	36714178	36714178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:36714178G>A	uc003omr.1	-	16	1262	c.1195C>T	c.(1195-1197)CCA>TCA	p.P399S	CPNE5_uc003omp.1_Missense_Mutation_p.P107S|CPNE5_uc010jwn.1_Missense_Mutation_p.P49S|CPNE5_uc003omq.1_Missense_Mutation_p.P49S	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	399	VWFA.									skin(1)	1						CCTACCAGTGGGAACTCGTGG	0.642000													11	33					0	0	0.000151284	0	0
CPNE5	57699	broad.mit.edu	37	6	36716016	36716016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:36716016C>T	uc003omr.1	-	15	1067	c.1000G>A	c.(1000-1002)GAT>AAT	p.D334N	CPNE5_uc003omp.1_Missense_Mutation_p.D42N|CPNE5_uc010jwn.1_5'UTR|CPNE5_uc003omq.1_5'UTR	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	334	VWFA.									skin(1)	1						GCAGTGAAATCAATGGCCACA	0.592000													12	88					0	0	0.000219431	0	0
PI16	221476	broad.mit.edu	37	6	36931667	36931667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:36931667C>T	uc003ona.2	+	6	1667	c.1339C>T	c.(1339-1341)CCT>TCT	p.P447S	PI16_uc003omz.1_Missense_Mutation_p.P254S|PI16_uc003onb.2_Missense_Mutation_p.P254S|PI16_uc011dts.1_Missense_Mutation_p.P218S	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	447	Helical; (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						TGTGTGGGGCCCTCTCCTGGG	0.617000													4	33					0	0	0.00024832	0	0
MDGA1	266727	broad.mit.edu	37	6	37626132	37626132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:37626132C>T	uc003onu.1	-	3	1450	c.271G>A	c.(271-273)GAG>AAG	p.E91K		NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	91	Ig-like 1.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						CGCAGCGTCTCGTTGAACACC	0.647000													11	38					0	0	0.000673444	0	0
DNAH8	1769	broad.mit.edu	37	6	38758067	38758067	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:38758067G>A	uc003ooe.1	+	18	2616	c.2016G>A	c.(2014-2016)GTG>GTA	p.V672V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTTTCTAGGTGGAATCTGTGT	0.353000													11	88					0	0	0.000978159	0	0
KIF6	221458	broad.mit.edu	37	6	39607510	39607510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:39607510G>A	uc003oot.2	-	4	370	c.275C>T	c.(274-276)ACC>ATC	p.T92I	KIF6_uc010jxa.1_5'UTR|KIF6_uc011dua.1_Missense_Mutation_p.T92I|KIF6_uc010jxb.1_Missense_Mutation_p.T92I	NM_145027	NP_659464	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	92	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)	3						TGCAAAGATGGTACCATTGTA	0.428000													5	34					0	0	0.000157383	0	0
TREML2	79865	broad.mit.edu	37	6	41165871	41165871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:41165871C>T	uc010jxm.1	-	2	531	c.352G>A	c.(352-354)GGC>AGC	p.G118S		NM_024807	NP_079083	Q5T2D2	TRML2_HUMAN	triggering receptor expressed on myeloid	118	Ig-like V-type.|Extracellular (Potential).				T cell activation	cell surface|integral to membrane|plasma membrane	protein binding|receptor activity			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGCTGGAAGCCCATCAAGGGG	0.597000													4	18					0	0	0.00116845	0	0
SLC22A7	10864	broad.mit.edu	37	6	43271893	43271893	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:43271893C>T	uc003out.2	+	10	1602	c.1503C>T	c.(1501-1503)ATC>ATT	p.I501I	SLC22A7_uc003ous.2_Silent_p.I499I	NM_153320	NP_696961	Q9Y694	S22A7_HUMAN	solute carrier family 22 member 7 isoform b	501	Helical; (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	anion:anion antiporter activity|sodium-independent organic anion transmembrane transporter activity				0			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00998)|OV - Ovarian serous cystadenocarcinoma(102;0.0305)			ATGGGGGGATCGCCCTGCTGG	0.652000													10	67					0	0	0.000442599	0	0
ABCC10	89845	broad.mit.edu	37	6	43412955	43412955	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:43412955A>G	uc003ouy.1	+	14	3148	c.2933A>G	c.(2932-2934)AAT>AGT	p.N978S	ABCC10_uc003ouz.1_Missense_Mutation_p.N950S|ABCC10_uc010jyo.1_Missense_Mutation_p.N84S	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	978	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			GCTGGTGTAAATTCCCTCTGC	0.587000													7	34					0	0	8.12818e-05	0	0
PGK2	5232	broad.mit.edu	37	6	49754123	49754123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:49754123C>T	uc003ozu.2	-	1	885	c.778G>A	c.(778-780)GAA>AAA	p.E260K		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	260					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					GCTCCCTCTTCATCAAACAGG	0.403000													6	40					0	0	0.00116845	0	0
TFAP2D	83741	broad.mit.edu	37	6	50696950	50696950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:50696950G>A	uc003paf.2	+	5	1320	c.808G>A	c.(808-810)GAT>AAT	p.D270N	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	270							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					AGAGAAATTGGATAGGCTTGG	0.388000													12	61					0	0	0.000219431	0	0
IL17A	3605	broad.mit.edu	37	6	52052552	52052552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:52052552C>T	uc003pak.1	+	2	224	c.179C>T	c.(178-180)CCC>CTC	p.P60L		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	60					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					AATACCAATCCCAAAAGGTCC	0.448000													10	69					0	0	0.000673444	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147023	55147023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:55147023G>A	uc003pcl.2	+	7	1421	c.1106G>A	c.(1105-1107)GGA>GAA	p.G369E	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	369	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TGTTTGCCAGGAAAATTTCGA	0.438000													4	19					0	0	0.00024832	0	0
GFRAL	389400	broad.mit.edu	37	6	55216067	55216067	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:55216067G>A	uc003pcm.1	+	5	473	c.387G>A	c.(385-387)TGG>TGA	p.W129*		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	129	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAGGGATGTGGTCCTGTTTGG	0.443000													8	67					0	0	0.000978159	0	0
EEF1A1	1915	broad.mit.edu	37	6	74229131	74229131	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:74229131A>G	uc003phi.2	-	2	290	c.253T>C	c.(253-255)TAC>CAC	p.Y85H	EEF1A1_uc003phd.2_5'Flank|EEF1A1_uc003phe.2_Missense_Mutation_p.Y85H|EEF1A1_uc003phf.2_Missense_Mutation_p.Y85H|EEF1A1_uc003phg.2_Missense_Mutation_p.Y85H|EEF1A1_uc003phh.2_Intron|EEF1A1_uc003phj.2_Missense_Mutation_p.Y85H|EEF1A1_uc003phk.2_Missense_Mutation_p.Y85H|EEF1A1_uc003phl.2_Splice_Site_p.N84_splice|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	85						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						GTCACATAGTACTTGCTGGTC	0.428000											OREG0003890	type=REGULATORY REGION|Gene=LOC477388|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	17	82					0	0	0.00152264	0	0
CD109	135228	broad.mit.edu	37	6	74497077	74497077	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:74497077T>G	uc003php.2	+	21	2883	c.2458T>G	c.(2458-2460)TTT>GTT	p.F820V	CD109_uc010kaz.2_Intron|CD109_uc003phq.2_Missense_Mutation_p.F820V|CD109_uc010kba.2_Missense_Mutation_p.F743V	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	820						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						AACTGTTCTTTTTCCCATCAG	0.443000													7	49					0	0	8.12818e-05	0	0
FILIP1	27145	broad.mit.edu	37	6	76023073	76023073	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:76023073C>T	uc003pia.2	-	5	2848	c.2475G>A	c.(2473-2475)CGG>CGA	p.R825R	FILIP1_uc003phy.1_Silent_p.R825R|FILIP1_uc003phz.2_Silent_p.R726R|FILIP1_uc010kbe.2_Silent_p.R828R|FILIP1_uc003pib.1_Silent_p.R577R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	825										skin(3)|ovary(1)	4						GGAAGGATTTCCGTATGAATA	0.463000													25	108					0	0	0.00127121	0	0
MYO6	4646	broad.mit.edu	37	6	76570771	76570771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:76570771G>A	uc003pih.1	+	15	1784	c.1505G>A	c.(1504-1506)GGT>GAT	p.G502D	MYO6_uc003pig.1_Missense_Mutation_p.G502D|MYO6_uc003pii.1_Missense_Mutation_p.G502D	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	502	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		GAAGGTTTAGGTGTTAATGAA	0.313000													17	63					0	0	0.000229342	0	0
IMPG1	3617	broad.mit.edu	37	6	76640691	76640691	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:76640691T>G	uc003pik.1	-	15	2352	c.2222A>C	c.(2221-2223)CAG>CCG	p.Q741P		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	741					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TCCCTTTCCCTGGAGGACCTC	0.537000													5	35					0	0	0.00116845	0	0
MRAP2	112609	broad.mit.edu	37	6	84772701	84772701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:84772701C>T	uc003pkg.3	+	3	407	c.217C>T	c.(217-219)CCA>TCA	p.P73S	MRAP2_uc010kbo.2_Intron	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	73					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						GACAGGAGCCCCACACCAAGA	0.468000													5	31					0	0	0.000602214	0	0
ZUFSP	221302	broad.mit.edu	37	6	116966922	116966922	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:116966922G>A	uc003pxf.1	-	9	1890	c.1644C>T	c.(1642-1644)TAC>TAT	p.Y548Y	ZUFSP_uc010kef.1_Silent_p.Y352Y	NM_145062	NP_659499	Q96AP4	ZUFSP_HUMAN	zinc finger with UFM1-specific peptidase domain	548						intracellular	zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(226;0.0258)|all cancers(137;0.0368)|OV - Ovarian serous cystadenocarcinoma(136;0.0464)|Epithelial(106;0.186)		CCAATATCTGGTATTGCTTAT	0.343000													18	48					0	0	0.00152264	0	0
PLG	5340	broad.mit.edu	37	6	161134046	161134046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:161134046G>A	uc003qtm.3	+	5	499	c.436G>A	c.(436-438)GGA>AGA	p.G146R		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	146	Kringle 1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CCCCTCAGAGGGACTGGAGGA	0.478000													8	38					0	0	0.000978159	0	0
PACRG	135138	broad.mit.edu	37	6	163483306	163483307	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:163483306_163483307GG>AA	uc003qua.2	+	4	640_641	c.416_417GG>AA	c.(415-417)GGG>GAA	p.G139E	PACRG_uc003qub.2_Missense_Mutation_p.G139E|PACRG_uc003quc.2_Missense_Mutation_p.G139E	NM_152410	NP_689623	Q96M98	PACRG_HUMAN	parkin co-regulated gene protein isoform 1	139											0		Breast(66;2.41e-05)|Ovarian(120;0.0245)|Prostate(117;0.0273)|all_neural(5;0.0416)|Glioma(2;0.203)		OV - Ovarian serous cystadenocarcinoma(33;4.31e-19)|GBM - Glioblastoma multiforme(2;7.42e-11)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)|KIRC - Kidney renal clear cell carcinoma(3;0.205)|Kidney(3;0.242)		GAACACGGTGGGAACAAGATCC	0.431000													6	21					0	0	6.4e-05	0	0
C6orf118	168090	broad.mit.edu	37	6	165715346	165715346	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:165715346C>T	uc003qum.3	-	2	501	c.465G>A	c.(463-465)GGG>GGA	p.G155G	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	155											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TTTCTTCCTTCCCCTCTCTGA	0.612000													10	40					0	0	0.000673444	0	0
THBS2	7058	broad.mit.edu	37	6	169648776	169648776	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr6:169648776G>A	uc003qwt.2	-	4	593	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	115	TSP N-terminal.|Heparin-binding (Potential).				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CGTTGGAGACGATCTCGAACT	0.657000													16	40					0	0	0.00074312	0	0
IQCE	23288	broad.mit.edu	37	7	2634551	2634551	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:2634551C>T	uc003smo.3	+	16	1565	c.1381C>T	c.(1381-1383)CAA>TAA	p.Q461*	IQCE_uc010ksm.1_Nonsense_Mutation_p.Q461*|IQCE_uc003sml.1_Nonsense_Mutation_p.Q461*|IQCE_uc011jvy.1_Nonsense_Mutation_p.Q445*|IQCE_uc011jvz.1_Nonsense_Mutation_p.Q396*|IQCE_uc003smk.3_Nonsense_Mutation_p.Q445*|IQCE_uc003smn.3_Nonsense_Mutation_p.Q396*	NM_152558	NP_689771	Q6IPM2	IQCE_HUMAN	IQ motif containing E isoform 1	461	Potential.										0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;1.23e-13)		CAGCAAGCTCCAAGAATTGCA	0.498000													20	114					0	0	0.000375601	0	0
SOSTDC1	25928	broad.mit.edu	37	7	16505095	16505095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:16505095G>A	uc003stg.2	-	1	380	c.199C>T	c.(199-201)CGG>TGG	p.R67W	SOSTDC1_uc003sth.2_Missense_Mutation_p.R67W	NM_015464	NP_056279	Q6X4U4	SOSD1_HUMAN	sclerostin domain containing 1 precursor	67					Wnt receptor signaling pathway					ovary(2)|central_nervous_system(1)	3	Lung NSC(10;0.185)			UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		TTACTGTTCCGATCCAGTCCA	0.408000													16	63					0	0	0.00152264	0	0
STK31	56164	broad.mit.edu	37	7	23826463	23826463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:23826463C>T	uc003sws.3	+	20	2474	c.2407C>T	c.(2407-2409)CCT>TCT	p.P803S	STK31_uc003swt.3_Missense_Mutation_p.P780S|STK31_uc011jze.1_Missense_Mutation_p.P803S|STK31_uc010kuq.2_Missense_Mutation_p.P780S|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	803	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTAGTCTGATCCTATGGCTTA	0.348000													10	58					0	0	0.000442599	0	0
CPVL	54504	broad.mit.edu	37	7	29152324	29152324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:29152324G>A	uc003szv.2	-	3	403	c.284C>T	c.(283-285)GCT>GTT	p.A95V	CPVL_uc003szw.2_Missense_Mutation_p.A95V|CPVL_uc003szx.2_Missense_Mutation_p.A95V	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	95					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						ACCTACCTGAGCTGGGAAGAA	0.483000													6	22					0	0	0.000157383	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31124435	31124435	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:31124435C>T	uc003tca.1	+	8	745	c.522C>T	c.(520-522)ATC>ATT	p.I174I	ADCYAP1R1_uc003tcb.1_Silent_p.I153I|ADCYAP1R1_uc003tcc.1_Silent_p.I174I|ADCYAP1R1_uc003tcd.1_Silent_p.I174I|ADCYAP1R1_uc003tce.1_Silent_p.I174I|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	174	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						CCATGGTCATCCTTTGTCGCT	0.572000													10	39					0	0	0.00136819	0	0
GPR141	353345	broad.mit.edu	37	7	37780129	37780129	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:37780129T>A	uc003tfm.1	+	1	134	c.134T>A	c.(133-135)ATG>AAG	p.M45K	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	45	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						CTGGTGAAAATGAACACCCGG	0.498000													6	28					0	0	0.00116845	0	0
GLI3	2737	broad.mit.edu	37	7	42004228	42004228	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:42004228G>A	uc011kbh.1	-	15	4534	c.4443C>T	c.(4441-4443)TCC>TCT	p.S1481S	GLI3_uc011kbg.1_Silent_p.S1422S	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1481					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						TAGCACCTGGGGAAAGTAACT	0.532000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				9	23					0	0	0.000274275	0	0
SEPT7P2	641977	broad.mit.edu	37	7	45798762	45798762	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:45798762G>A	uc003tnh.2	-	2		c.371C>T			SEPT7P2_uc003tnf.3_RNA	NR_024271				Homo sapiens mRNA; cDNA DKFZp313J1114 (from clone DKFZp313J1114).												0						TTAAAACTTTGGATTGTTCCA	0.383000													6	31					0	0	0.00116845	0	0
PCLO	27445	broad.mit.edu	37	7	82579979	82579979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:82579979C>T	uc003uhx.2	-	6	10214	c.9925G>A	c.(9925-9927)GAG>AAG	p.E3309K	PCLO_uc003uhv.2_Missense_Mutation_p.E3309K|PCLO_uc010lec.2_Missense_Mutation_p.E274K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3240	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCTTTTGCTCCTCCAGCTGC	0.493000													33	83					0	0	0.000409698	0	0
ADAM22	53616	broad.mit.edu	37	7	87785277	87785277	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:87785277C>T	uc003ujn.2	+	22	1942	c.1863C>T	c.(1861-1863)ATC>ATT	p.I621I	ADAM22_uc003ujk.1_Silent_p.I621I|ADAM22_uc003ujl.1_Silent_p.I621I|ADAM22_uc003ujm.2_Silent_p.I621I|ADAM22_uc003ujo.2_Silent_p.I621I|ADAM22_uc003ujp.1_Silent_p.I673I	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	621	Cys-rich.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			ATGGTGAAATCACATCTACTT	0.378000													20	33					0	0	0.00152264	0	0
ZNF804B	219578	broad.mit.edu	37	7	88956682	88956682	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:88956682G>A	uc011khi.1	+	3	812	c.274G>A	c.(274-276)GAA>AAA	p.E92K		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	92						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AAAGCAACGGGAATTTGCTCG	0.338000										HNSCC(36;0.09)			9	30					0	0	0.00136819	0	0
SAMD9	54809	broad.mit.edu	37	7	92731442	92731442	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:92731442G>A	uc003umf.2	-	3	4225	c.3969C>T	c.(3967-3969)TTC>TTT	p.F1323F	SAMD9_uc003umg.2_Silent_p.F1323F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1323						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GTGGCTCACTGAACTTTGATC	0.378000													15	116					0	0	0.000308642	0	0
COL1A2	1278	broad.mit.edu	37	7	94033878	94033878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:94033878G>A	uc003ung.1	+	7	761	c.290G>A	c.(289-291)GGA>GAA	p.G97E	COL1A2_uc011kib.1_Missense_Mutation_p.G97E|COL1A2_uc010lfh.1_5'Flank	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	97					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGCTTAATGGGACCTAGAGGC	0.443000										HNSCC(75;0.22)			24	30					0	0	0.000878237	0	0
LMTK2	22853	broad.mit.edu	37	7	97780697	97780697	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:97780697G>T	uc003upd.1	+	4	673	c.380G>T	c.(379-381)GGA>GTA	p.G127V		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	127					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					TCTACAGAGGGATTGAAGTCT	0.303000													13	60					3.27435e-08	1.94164e-07	0.000219431	1	0
TECPR1	25851	broad.mit.edu	37	7	97862900	97862900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:97862900G>A	uc003upg.2	-	11	1710	c.1505C>T	c.(1504-1506)TCG>TTG	p.S502L	TECPR1_uc003uph.1_Missense_Mutation_p.S432L	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	502						integral to membrane	protein binding			pancreas(1)	1						GCCAGCGGCCGAGTGGCTGGG	0.692000													11	29					0	0	0.00136819	0	0
PTCD1	26024	broad.mit.edu	37	7	99017659	99017660	+	Missense_Mutation	DNP	CC	TT	TT	rs150466149		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:99017659_99017660CC>TT	uc003uqh.2	-	8	2164_2165	c.2033_2034GG>AA	c.(2032-2034)CGG>CAA	p.R678Q	PTCD1_uc011kiw.1_Missense_Mutation_p.R727Q	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	678										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			GGGGCTTGGTCCGGAACTTCTG	0.614000													9	105					0	0	6.4e-05	0	0
CYP3A43	64816	broad.mit.edu	37	7	99445222	99445222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:99445222G>A	uc003urx.1	+	5	533	c.430G>A	c.(430-432)GAA>AAA	p.E144K	CYP3A43_uc003ury.1_Missense_Mutation_p.E144K|CYP3A43_uc003urz.1_Missense_Mutation_p.E144K|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Intron|CYP3A43_uc003usb.1_5'UTR	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	144			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AAAATTCAAGGAAGTAAGAAA	0.348000													46	86					0	0	0.000781405	0	0
MIR93	407050	broad.mit.edu	37	7	99691394	99691394	+	RNA	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:99691394G>A	hsa-mir-93|MI0000095	-			c.77G>A			MCM7_uc003usv.1_Intron|MCM7_uc003usw.1_Intron|MCM7_uc003usx.1_Intron|uc003usy.1_5'Flank|MIR25_hsa-mir-25|MI0000082_5'Flank|uc003usz.1_RNA																	0						ACGTGTCCCGGGGGCTCGGGA	0.587000													7	24					0	0	0.000442599	0	0
C7orf51	222950	broad.mit.edu	37	7	100086448	100086448	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:100086448C>T	uc003uvd.1	+	4	1263	c.1104C>T	c.(1102-1104)GGC>GGT	p.G368G	C7orf51_uc003uve.1_Silent_p.G150G	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	368	Pro-rich.									skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGCCAGCCGGCTCCACCCCAG	0.687000													15	21					0	0	0.000308642	0	0
MUC17	140453	broad.mit.edu	37	7	100684088	100684088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:100684088G>A	uc003uxp.1	+	3	9444	c.9391G>A	c.(9391-9393)GAC>AAC	p.D3131N	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3131	Extracellular (Potential).|Ser-rich.|50.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTGTTGACACCAGCAC	0.493000													88	165					0	0	0.000781405	0	0
MUC17	140453	broad.mit.edu	37	7	100687042	100687042	+	Silent	SNP	G	A	A	rs140217158		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:100687042G>A	uc003uxp.1	+	3	12398	c.12345G>A	c.(12343-12345)ACG>ACA	p.T4115T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4115	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity	p.T4115T(1)		ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTGTCCCCACGAATACTACAA	0.463000													16	27					0	0	0.000958276	0	0
RELN	5649	broad.mit.edu	37	7	103136310	103136310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:103136310G>A	uc003vca.2	-	57	9389	c.9229C>T	c.(9229-9231)CCT>TCT	p.P3077S	RELN_uc010liz.2_Missense_Mutation_p.P3077S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3077					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACAGCATTAGGGTAAAAACTC	0.408000													7	78					0	0	0.000157383	0	0
RELN	5649	broad.mit.edu	37	7	103341446	103341446	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:103341446A>G	uc003vca.2	-	9	973	c.813T>C	c.(811-813)GGT>GGC	p.G271G	RELN_uc010liz.2_Silent_p.G271G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	271					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGCGACATGAACCTGACCCTG	0.313000													27	34					0	0	0.00106085	0	0
PIK3CG	5294	broad.mit.edu	37	7	106513287	106513287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:106513287G>A	uc003vdv.3	+	4	2276	c.2191G>A	c.(2191-2193)GAC>AAC	p.D731N	PIK3CG_uc003vdu.2_Missense_Mutation_p.D731N|PIK3CG_uc003vdw.2_Missense_Mutation_p.D731N	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	731					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						CATGCTGCACGACTTTACCCA	0.473000													9	85					0	0	0.000442599	0	0
SLC26A4	5172	broad.mit.edu	37	7	107315535	107315535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:107315535G>A	uc003vep.2	+	6	970	c.746G>A	c.(745-747)GGA>GAA	p.G249E		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	249	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						AACTACAATGGAGTTCTCTCT	0.418000									Pendred_syndrome				15	110					0	0	0.000308642	0	0
SLC26A3	1811	broad.mit.edu	37	7	107432331	107432331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:107432331G>A	uc003ver.2	-	4	537	c.326C>T	c.(325-327)TCC>TTC	p.S109F	SLC26A3_uc003ves.2_Missense_Mutation_p.S74F	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	109	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TGGGAAAAAGGATGCATACAA	0.453000													39	59					0	0	0.000781405	0	0
LAMB4	22798	broad.mit.edu	37	7	107703302	107703302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:107703302C>T	uc010ljo.1	-	23	3283	c.3199G>A	c.(3199-3201)GGA>AGA	p.G1067R	LAMB4_uc003vey.2_Missense_Mutation_p.G1067R|LAMB4_uc010ljp.1_Missense_Mutation_p.G36R	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1067	Laminin EGF-like 11.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TTCCAGTATCCATCAGCACAA	0.557000													11	26					0	0	0.000978159	0	0
KCND2	3751	broad.mit.edu	37	7	119915147	119915147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:119915147C>T	uc003vjj.1	+	1	1426	c.461C>T	c.(460-462)ACC>ATC	p.T154I		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	154	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GACGCGGATACCGACACCGCT	0.622000													6	58					0	0	0.00116845	0	0
CADPS2	93664	broad.mit.edu	37	7	122194668	122194668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:122194668C>T	uc010lkp.2	-	8	1574	c.1411G>A	c.(1411-1413)GAT>AAT	p.D471N	CADPS2_uc003vkg.3_Missense_Mutation_p.D171N|CADPS2_uc010lkq.2_Missense_Mutation_p.D471N	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	471					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						AAGTCAGAATCCTGGCTATTT	0.353000													5	14					0	0	0.00116845	0	0
RBM28	55131	broad.mit.edu	37	7	127976096	127976096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:127976096C>T	uc003vmp.2	-	7	729	c.614G>A	c.(613-615)GGT>GAT	p.G205D	RBM28_uc003vmo.2_5'Flank|RBM28_uc011koj.1_Missense_Mutation_p.G64D|RBM28_uc011kok.1_Missense_Mutation_p.G152D	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	205					mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						CTTTTCCTCACCTATGGAGGG	0.333000													12	16					0	0	0.000566183	0	0
SMO	6608	broad.mit.edu	37	7	128846357	128846357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:128846357G>A	uc003vor.2	+	6	1473	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	SMO_uc003vos.2_Missense_Mutation_p.R73Q	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	398	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						AAGAACTACCGATACCGTGCG	0.602000			Mis		skin basal cell 								16	104					0	0	0.000422831	0	0
PLXNA4	91584	broad.mit.edu	37	7	131895803	131895803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:131895803C>T	uc003vra.3	-	10	2426	c.2197G>A	c.(2197-2199)GGG>AGG	p.G733R		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	733	Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCACGCTGCCCAGACTGGGGC	0.627000													4	8					0	0	0.00024832	0	0
KIAA1549	57670	broad.mit.edu	37	7	138566161	138566161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:138566161G>A	uc011kql.1	-	11	4251	c.4202C>T	c.(4201-4203)CCT>CTT	p.P1401L	KIAA1549_uc011kqi.1_Missense_Mutation_p.P185L|KIAA1549_uc003vuk.3_Missense_Mutation_p.P1351L|KIAA1549_uc011kqj.1_Missense_Mutation_p.P1401L|KIAA1549_uc011kqk.1_Missense_Mutation_p.P185L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1401						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						ATTCTTGGAAGGGATCTTTGA	0.473000			O	BRAF	pilocytic astrocytoma								18	96					0	0	0.00074312	0	0
HIPK2	28996	broad.mit.edu	37	7	139315928	139315928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:139315928G>A	uc003vvf.3	-	4	1504	c.1330C>T	c.(1330-1332)CCT>TCT	p.P444S	HIPK2_uc003vvd.3_Missense_Mutation_p.P444S	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	444	Protein kinase.|Interaction with DAXX.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					CTCCACAAAGGATATGGTGAG	0.502000													6	24					0	0	0.00116845	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	40					0	0	6.4e-05	0	0
OR9A4	130075	broad.mit.edu	37	7	141618714	141618714	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:141618714C>T	uc003vwu.1	+	1	39	c.39C>T	c.(37-39)CTC>CTT	p.L13L		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					AATTTTATCTCCTTGGCTTCC	0.378000													54	122					0	0	0.000781405	0	0
OR9A4	130075	broad.mit.edu	37	7	141618858	141618858	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:141618858C>T	uc003vwu.1	+	1	183	c.183C>T	c.(181-183)TTC>TTT	p.F61F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					TGTATTTCTTCCTCGGCCACC	0.463000													9	90					0	0	0.000442599	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672853	141672853	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:141672853A>C	uc003vwx.1	-	1	721	c.637T>G	c.(637-639)TCT>GCT	p.S213A		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	213	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					AGCATCCCAGAAGAAACCAGA	0.463000													6	40					0	0	8.12818e-05	0	0
EPHB6	2051	broad.mit.edu	37	7	142562206	142562206	+	Silent	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:142562206G>C	uc011kst.1	+	7	1435	c.648G>C	c.(646-648)ACG>ACC	p.T216T	EPHB6_uc011ksu.1_Silent_p.T216T|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_5'UTR|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	216	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TCCAGGACACGGGGGCCTGCC	0.657000													4	133					0	0	0.000602214	0	0
EPHB6	2051	broad.mit.edu	37	7	142566002	142566002	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:142566002G>C	uc011kst.1	+	14	2709	c.1922G>C	c.(1921-1923)GGG>GCG	p.G641A	EPHB6_uc011ksu.1_Missense_Mutation_p.G641A|EPHB6_uc003wbs.2_Missense_Mutation_p.G349A|EPHB6_uc003wbt.2_Missense_Mutation_p.G115A|EPHB6_uc003wbu.2_Missense_Mutation_p.G349A|EPHB6_uc003wbv.2_Missense_Mutation_p.G25A	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	641	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					CCAGGACTCGGGGTGAAGTAT	0.572000													3	58					0	0	0.00024832	0	0
TRPV6	55503	broad.mit.edu	37	7	142569537	142569537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:142569537C>T	uc003wbx.1	-	15	2317	c.2101G>A	c.(2101-2103)GGG>AGG	p.G701R	TRPV6_uc003wbw.1_Missense_Mutation_p.G487R|TRPV6_uc010lou.1_Missense_Mutation_p.G572R	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	701	Interaction with calmodulin.|Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CTCAGGGTCCCTTGCCGAAGC	0.587000													9	60					0	0	0.000442599	0	0
CLCN1	1180	broad.mit.edu	37	7	143027919	143027919	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:143027919G>A	uc003wcr.1	+	8	995	c.908G>A	c.(907-909)TGG>TAG	p.W303*	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Missense_Mutation_p.G99R	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	303	Helical; (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CGGAACTACTGGAGAGGATTC	0.552000													7	49					0	0	0.000157383	0	0
OR2A14	135941	broad.mit.edu	37	7	143826480	143826480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:143826480C>T	uc011kua.1	+	1	275	c.275C>T	c.(274-276)TCC>TTC	p.S92F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGCACCATCTCCTTTTTTCCA	0.438000													28	182					0	0	0.00178596	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:146997332G>A	uc003weu.1	+	9	1964	c.1448G>A	c.(1447-1449)CGA>CAA	p.R483Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	483	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCAGCAGTTCGAACTAATAGT	0.423000										HNSCC(39;0.1)			21	36					0	0	0.000229342	0	0
ZNF777	27153	broad.mit.edu	37	7	149152510	149152510	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:149152510G>A	uc003wfv.2	-	2	767	c.604C>T	c.(604-606)CAG>TAG	p.Q202*		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CTCATGGCCTGGGCCTCCAGC	0.602000													14	126					0	0	0.000308642	0	0
ZNF746	155061	broad.mit.edu	37	7	149171709	149171709	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:149171709G>A	uc003wfw.2	-	7	1972	c.1701C>T	c.(1699-1701)ACC>ACT	p.T567T	ZNF746_uc010lpi.2_Silent_p.T568T	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	567	C2H2-type 4.				negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			AGACGGTGCAGGTGAAGGGCC	0.672000													4	27					0	0	0.000602214	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164382	150164382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150164382C>T	uc003whj.2	+	2	926	c.596C>T	c.(595-597)CCC>CTC	p.P199L		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	199						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		AACGGAGGACCCTATCATGTG	0.413000													18	40					0	0	0.00152264	0	0
GIMAP2	26157	broad.mit.edu	37	7	150390337	150390337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150390337G>A	uc003who.2	+	3	1051	c.963G>A	c.(961-963)ATG>ATA	p.M321I	GIMAP1_uc003whp.2_Intron	NM_015660	NP_056475	Q9UG22	GIMA2_HUMAN	GTPase, IMAP family member 2	321						integral to membrane	GTP binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAAGTTAATGATATTTTTGA	0.328000													13	34					0	0	0.000219431	0	0
TMEM176B	28959	broad.mit.edu	37	7	150488702	150488702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150488702C>T	uc003wht.3	-	7	896	c.730G>A	c.(730-732)GGA>AGA	p.G244R	TMEM176B_uc003whu.3_Missense_Mutation_p.G244R|TMEM176B_uc003whv.3_Missense_Mutation_p.G207R|TMEM176B_uc003whw.3_Missense_Mutation_p.G244R	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	244					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTCTCTGATCCTTCCTCATTC	0.443000													5	39					0	0	0.000602214	0	0
ABP1	26	broad.mit.edu	37	7	150558278	150558278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150558278G>A	uc003why.1	+	6	6455	c.2237G>A	c.(2236-2238)GGG>GAG	p.G746E	ABP1_uc003whz.1_Missense_Mutation_p.G746E|ABP1_uc003wia.1_Missense_Mutation_p.G765E	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	746					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	AGCTACAATGGGACCTATAGA	0.512000													9	11					0	0	0.000274275	0	0
KCNH2	3757	broad.mit.edu	37	7	150647323	150647323	+	Silent	SNP	G	A	A	rs41307292		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150647323G>A	uc003wic.2	-	9	2344	c.2331C>T	c.(2329-2331)ACC>ACT	p.T777T	KCNH2_uc003wib.2_Silent_p.T437T|KCNH2_uc011kux.1_Silent_p.T681T|KCNH2_uc003wid.2_Silent_p.T437T|KCNH2_uc003wie.2_Silent_p.T777T	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	777	Cytoplasmic (Potential).|cNMP.				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	AGTACAGGGCGGTGAGCAGGT	0.662000													8	62					0	0	0.000157383	0	0
AGAP3	116988	broad.mit.edu	37	7	150831497	150831497	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:150831497A>G	uc003wjg.1	+	11	1340	c.1337A>G	c.(1336-1338)CAG>CGG	p.Q446R	AGAP3_uc003wje.1_Missense_Mutation_p.Q218R|AGAP3_uc003wjj.1_Missense_Mutation_p.Q2R	NM_031946	NP_114152	Q96P47	AGAP3_HUMAN	centaurin, gamma 3 isoform a	410	PH.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm|membrane	ARF GTPase activator activity|GTP binding|GTPase activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3						GATTACATGCAGAACATCCAC	0.612000													11	93					0	0	0.000151284	0	0
PRKAG2	51422	broad.mit.edu	37	7	151372708	151372708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:151372708G>A	uc003wkk.2	-	4	1093	c.482C>T	c.(481-483)TCC>TTC	p.S161F	PRKAG2_uc011kvl.1_Missense_Mutation_p.S37F|PRKAG2_uc003wkj.2_Missense_Mutation_p.S117F|PRKAG2_uc010lqe.1_RNA|PRKAG2_uc003wkm.1_Missense_Mutation_p.S161F	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	161					ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TGACGGAGAGGAGGAGAGGCC	0.587000													37	44					0	0	0.00170553	0	0
WDR60	55112	broad.mit.edu	37	7	158704297	158704297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:158704297C>T	uc003woe.3	+	12	1675	c.1517C>T	c.(1516-1518)TCT>TTT	p.S506F	WDR60_uc010lqv.2_RNA|WDR60_uc010lqw.2_Missense_Mutation_p.S138F	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	506										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		TTTACTTTCTCTCTCTTGGAT	0.323000													13	90					0	0	0.00136819	0	0
CSMD1	64478	broad.mit.edu	37	8	2967741	2967741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:2967741C>T	uc011kwk.1	-	43	6940	c.6550G>A	c.(6550-6552)GGA>AGA	p.G2184R	CSMD1_uc011kwj.1_Missense_Mutation_p.G1576R|CSMD1_uc010lrg.2_Missense_Mutation_p.G252R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2184	Extracellular (Potential).|CUB 13.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATGTAAACTCCGTGCCCTGGA	0.473000													4	12					0	0	0.000602214	0	0
ADAM28	10863	broad.mit.edu	37	8	24199170	24199170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:24199170G>A	uc003xdy.2	+	16	1813	c.1730G>A	c.(1729-1731)GGA>GAA	p.G577E	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.G264E	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	577	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		CCCTGGAAAGGACGGATAGTG	0.428000													18	74					0	0	0.00121646	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24254941	24254941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:24254941G>A	uc003xdz.2	+	6	819	c.599G>A	c.(598-600)CGA>CAA	p.R200Q	ADAMDEC1_uc010lub.2_Missense_Mutation_p.R121Q|ADAMDEC1_uc011lab.1_Missense_Mutation_p.R121Q	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	200					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GGCCCAATTCGAATCTCTAGA	0.428000													8	49					0	0	0.000274275	0	0
BRF2	55290	broad.mit.edu	37	8	37704688	37704688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:37704688G>A	uc003xkk.2	-	3	330	c.220C>T	c.(220-222)CGG>TGG	p.R74W		NM_018310	NP_060780	Q9HAW0	BRF2_HUMAN	RNA polymerase III transcription initiation	74	1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter|transcription initiation, DNA-dependent	nucleoplasm	protein binding|zinc ion binding				0		Lung NSC(58;0.118)|all_lung(54;0.195)	BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;1.81e-10)			CTCACTCGCCGGAGACCTAGG	0.502000													7	29					0	0	0.000157383	0	0
IDO2	169355	broad.mit.edu	37	8	39872789	39872789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:39872789G>A	uc010lwy.1	+	11	1173	c.931G>A	c.(931-933)GAT>AAT	p.D311N	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_Missense_Mutation_p.D52N|IDO2_uc003xnp.1_Missense_Mutation_p.D52N	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	298					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						CAGAATGAGGGATTACATGCC	0.443000													6	26					0	0	8.12818e-05	0	0
ST18	9705	broad.mit.edu	37	8	53076592	53076592	+	Nonsense_Mutation	SNP	G	A	A	rs149497456	byFrequency	TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:53076592G>A	uc003xqz.2	-	8	1510	c.1354C>T	c.(1354-1356)CAG>TAG	p.Q452*	ST18_uc011ldq.1_Nonsense_Mutation_p.Q99*|ST18_uc011ldr.1_Nonsense_Mutation_p.Q417*|ST18_uc011lds.1_Nonsense_Mutation_p.Q357*|ST18_uc003xra.2_Nonsense_Mutation_p.Q452*|ST18_uc003xrb.2_Nonsense_Mutation_p.Q452*	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	452						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GAATCAAGCTGATTTTTATCC	0.448000													8	80					0	0	0.000978159	0	0
C8orf46	254778	broad.mit.edu	37	8	67428239	67428239	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:67428239G>A	uc003xwg.2	+	6	945	c.552G>A	c.(550-552)CGG>CGA	p.R184R	C8orf46_uc003xwh.2_RNA|C8orf46_uc011let.1_3'UTR|C8orf46_uc003xwi.2_Silent_p.R49R	NM_152765	NP_689978	Q8TAG6	CH046_HUMAN	hypothetical protein LOC254778	184										skin(2)	2			Epithelial(68;0.0224)|BRCA - Breast invasive adenocarcinoma(89;0.0508)|all cancers(69;0.0558)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			GCATCCTCCGGAAAATGTGGA	0.547000													5	28					0	0	0.000602214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767189	77767189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:77767189C>T	uc003yav.2	+	10	8284	c.7897C>T	c.(7897-7899)CCG>TCG	p.P2633S	ZFHX4_uc003yau.1_Missense_Mutation_p.P2678S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2633S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2633	C2H2-type 17.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TAAACGGTGTCCGTTTTGCCG	0.547000										HNSCC(33;0.089)			15	42					0	0	0.00074312	0	0
CNGB3	54714	broad.mit.edu	37	8	87660058	87660058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:87660058G>A	uc003ydx.2	-	8	1007	c.961C>T	c.(961-963)CCA>TCA	p.P321S	CNGB3_uc010maj.2_Missense_Mutation_p.P183S	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	321	Helical; Name=H3; (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						CTAAACATTGGATTAAACCCA	0.303000													8	53					0	0	0.000978159	0	0
DPY19L4	286148	broad.mit.edu	37	8	95768263	95768264	+	Splice_Site	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:95768263_95768264GG>TT	uc003ygx.2	+	7	736	c.612_splice	c.e7-1	p.R204_splice		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4							integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GTTTATTTTAGGGTAGATACAA	0.213000													12	318					0	0	6.4e-05	0	0
DPY19L4	286148	broad.mit.edu	37	8	95800231	95800232	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:95800231_95800232CC>AA	uc003ygx.2	+	18	2082_2083	c.1958_1959CC>AA	c.(1957-1959)CCC>CAA	p.P653Q		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	653						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					GAGGTGGGACCCATGAGAGGCT	0.317000													10	342					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95839555	95839556	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:95839555_95839556GG>TT	uc003yhb.2	+	3	496_497	c.370_371GG>TT	c.(370-372)GGG>TTG	p.G124L	INTS8_uc003yha.1_Missense_Mutation_p.G124L|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_5'Flank	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	124					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					AGTTCCTCCTGGGACAAAGCAT	0.391000													13	468					0	0	6.4e-05	0	0
INTS8	55656	broad.mit.edu	37	8	95879562	95879563	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:95879562_95879563CC>AA	uc003yhb.2	+	20	2537_2538	c.2411_2412CC>AA	c.(2410-2412)CCC>CAA	p.P804Q	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P631Q	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	804					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TCTTCCATTCCCAAGTAAGTAG	0.302000													11	467					0	0	6.4e-05	0	0
CCNE2	9134	broad.mit.edu	37	8	95900275	95900276	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:95900275_95900276CC>AA	uc003yhc.2	-	7	588_589	c.479_480GG>TT	c.(478-480)AGG>ATT	p.R160I	CCNE2_uc003yhd.2_Missense_Mutation_p.R160I	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	160					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					AAAATGTTTCCCTATGAAGTGT	0.282000													16	384					0	0	6.4e-05	0	0
FZD6	8323	broad.mit.edu	37	8	104330892	104330892	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:104330892C>T	uc003ylh.2	+	3	536	c.252C>T	c.(250-252)ACC>ACT	p.T84T	FZD6_uc003yli.2_Silent_p.T84T|FZD6_uc003ylj.2_Silent_p.T84T|FZD6_uc011lhn.1_Silent_p.T50T|FZD6_uc011lho.1_Intron|FZD6_uc011lhp.1_Silent_p.T29T	NM_003506	NP_003497	O60353	FZD6_HUMAN	frizzled 6 isoform a precursor	84	FZ.|Extracellular (Potential).				angiogenesis|axonogenesis|cell proliferation in midbrain|establishment of planar polarity|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|inner ear morphogenesis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|neural tube closure|non-canonical Wnt receptor signaling pathway	apical part of cell|apicolateral plasma membrane|cytoplasm|integral to plasma membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.86e-05)|STAD - Stomach adenocarcinoma(118;0.197)			TTGTACCAACCTGCATAGAAC	0.363000													9	43					0	0	0.000978159	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814062	106814062	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:106814062C>T	uc003ymd.2	+	8	1775	c.1752C>T	c.(1750-1752)TTC>TTT	p.F584F	ZFPM2_uc011lhs.1_Silent_p.F315F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	584					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CCCCAGAGTTCCCTAGTGTGT	0.443000													11	73					0	0	0.000151284	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457202	110457202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:110457202G>A	uc003yne.2	+	38	5208	c.5104G>A	c.(5104-5106)GTT>ATT	p.V1702I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1702	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCCATGTAAAGTTCTATCAGT	0.448000										HNSCC(38;0.096)			29	122					0	0	0.000339439	0	0
CSMD3	114788	broad.mit.edu	37	8	113529367	113529367	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:113529367A>C	uc003ynu.2	-	28	4811	c.4652T>G	c.(4651-4653)GTT>GGT	p.V1551G	CSMD3_uc003yns.2_Missense_Mutation_p.V823G|CSMD3_uc003ynt.2_Missense_Mutation_p.V1511G|CSMD3_uc011lhx.1_Missense_Mutation_p.V1447G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1551	Extracellular (Potential).|Sushi 8.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACATTGAAAAACAACAGTGTC	0.498000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	38					0	0	0.00116845	0	0
RAD21	5885	broad.mit.edu	37	8	117870611	117870611	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:117870611A>G	uc003yod.2	-	5	749	c.461T>C	c.(460-462)ATT>ACT	p.I154T		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	154					apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					TTCTTGTAAAATACTGATGTT	0.333000													9	30					0	0	0.000673444	0	0
ADCY8	114	broad.mit.edu	37	8	131922098	131922098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:131922098C>T	uc003ytd.3	-	6	1752	c.1496G>A	c.(1495-1497)AGG>AAG	p.R499K	ADCY8_uc010mds.2_Missense_Mutation_p.R499K	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	499	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GTGTTTTGTCCTTGACCGCAC	0.448000										HNSCC(32;0.087)			5	33					0	0	8.12818e-05	0	0
COL22A1	169044	broad.mit.edu	37	8	139672713	139672713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:139672713C>T	uc003yvd.2	-	44	3698	c.3251G>A	c.(3250-3252)GGA>GAA	p.G1084E	COL22A1_uc011ljo.1_Missense_Mutation_p.G364E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1084	Pro-rich.|Gly-rich.|Collagen-like 9.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCCTGGATTTCCTGGTGCACC	0.398000										HNSCC(7;0.00092)			7	37					0	0	0.000157383	0	0
TOP1MT	116447	broad.mit.edu	37	8	144406777	144406777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr8:144406777G>A	uc003yxz.2	-	6	713	c.694C>T	c.(694-696)CCG>TCG	p.P232S	TOP1MT_uc011lkd.1_Missense_Mutation_p.P134S|TOP1MT_uc011lke.1_Missense_Mutation_p.P134S|TOP1MT_uc010mfb.2_Missense_Mutation_p.P134S|TOP1MT_uc011lkf.1_Missense_Mutation_p.P27S|TOP1MT_uc010mfd.1_Missense_Mutation_p.P27S	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	232					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	TGCCCCGCCGGCGGCTCGGGG	0.562000													16	92					0	0	0.000229342	0	0
DOCK8	81704	broad.mit.edu	37	9	325674	325674	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:325674C>T	uc003zgf.2	+	8	943	c.831C>T	c.(829-831)TTC>TTT	p.F277F	DOCK8_uc011lls.1_Silent_p.F277F|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Silent_p.F209F|DOCK8_uc003zgg.2_Silent_p.F209F|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	277					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		ATGGTAGGTTCGAGATTGAAA	0.358000													15	88					0	0	0.000958276	0	0
KDM4C	23081	broad.mit.edu	37	9	6888029	6888029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:6888029C>T	uc003zkh.2	+	7	1329	c.749C>T	c.(748-750)TCA>TTA	p.S250L	KDM4C_uc010mhu.2_Missense_Mutation_p.S272L|KDM4C_uc010mhw.2_Missense_Mutation_p.S250L|KDM4C_uc011lmi.1_Missense_Mutation_p.S250L|KDM4C_uc011lmj.1_RNA|KDM4C_uc003zkg.2_Missense_Mutation_p.S250L|KDM4C_uc011lmk.1_Missense_Mutation_p.S69L	NM_015061	NP_055876	Q9H3R0	KDM4C_HUMAN	jumonji domain containing 2C isoform 1	250	JmjC.				positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	nuclear chromatin	androgen receptor binding|enzyme binding|histone demethylase activity (H3-K9 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1						ATTTCTCCATCAGTATTGAAG	0.338000													9	54					0	0	0.000978159	0	0
ELAVL2	1993	broad.mit.edu	37	9	23701461	23701461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:23701461G>A	uc003zpu.2	-	5	904	c.629C>T	c.(628-630)ACC>ATC	p.T210I	ELAVL2_uc003zps.2_Missense_Mutation_p.T210I|ELAVL2_uc003zpt.2_Missense_Mutation_p.T210I|ELAVL2_uc003zpv.2_Missense_Mutation_p.T210I|ELAVL2_uc003zpw.2_Missense_Mutation_p.T210I	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	210					regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		GGCCTGATTGGTTTTTTGGCT	0.493000													8	88					0	0	0.000274275	0	0
C9orf11	54586	broad.mit.edu	37	9	27284922	27284922	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:27284922C>T	uc003zql.2	-	8	768	c.684G>A	c.(682-684)ACG>ACA	p.T228T	NCRNA00032_uc010mjd.1_5'Flank|C9orf11_uc011lnq.1_Silent_p.T199T	NM_020641	NP_065692	Q9NQ60	AFAF_HUMAN	Acr formation associated factor isoform 1	228	Cytoplasmic (Potential).					acrosomal membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(39;7.39e-08)|Lung(218;1.26e-05)|LUSC - Lung squamous cell carcinoma(38;0.000106)		AGTAAGACATCGTGGCCAGCT	0.378000													12	44					0	0	0.000978159	0	0
TAF1L	138474	broad.mit.edu	37	9	32634889	32634889	+	Missense_Mutation	SNP	G	A	A	rs142455268		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:32634889G>A	uc003zrg.1	-	1	779	c.689C>T	c.(688-690)CCA>CTA	p.P230L	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	230					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding	p.P230L(1)		lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCCAGCCAATGGAAGGGTCAG	0.463000													17	86					0	0	0.000958276	0	0
NFX1	4799	broad.mit.edu	37	9	33311157	33311157	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:33311157G>C	uc003zsq.2	+	6	1491	c.1430G>C	c.(1429-1431)TGT>TCT	p.C477S	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_Missense_Mutation_p.C477S|NFX1_uc003zso.2_Missense_Mutation_p.C477S|NFX1_uc003zsp.1_Missense_Mutation_p.C477S|NFX1_uc010mjr.1_Missense_Mutation_p.C477S|NFX1_uc003zsr.2_Missense_Mutation_p.C477S	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	477					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		ACAAAAACATGTGAATGTGGA	0.408000													22	101					0	0	0.000586117	0	0
PTENP1	11191	broad.mit.edu	37	9	33675964	33675964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:33675964G>A	uc003zth.3	-	1	1455	c.584C>T	c.(583-585)TCA>TTA	p.S195L		NR_023917				SubName: Full=Phosphatase and tensin homolog 2; Flags: Fragment;												0						TGTGGGTCCTGAATTGGAGGA	0.443000													16	62					0	0	0.00074312	0	0
ARID3C	138715	broad.mit.edu	37	9	34623474	34623474	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:34623474G>A	uc011lon.1	-	4	813	c.813C>T	c.(811-813)TCC>TCT	p.S271S	DCTN3_uc003zuw.1_5'Flank|DCTN3_uc003zux.1_5'Flank	NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	271	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		CTGGCAGGCCGGAGGTGGAAC	0.682000													9	51					0	0	0.000274275	0	0
UNC13B	10497	broad.mit.edu	37	9	35295814	35295814	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:35295814C>T	uc003zwq.2	+	8	940	c.648C>T	c.(646-648)TTC>TTT	p.F216F	UNC13B_uc010mkl.1_Silent_p.F216F|UNC13B_uc003zwr.2_Silent_p.F216F	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	216					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			TGCACCAGTTCCCTGTGCCGG	0.537000													8	37					0	0	0.000157383	0	0
RUSC2	9853	broad.mit.edu	37	9	35560484	35560484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:35560484G>A	uc003zww.2	+	10	4102	c.3847G>A	c.(3847-3849)GAT>AAT	p.D1283N	RUSC2_uc010mkq.2_RNA|RUSC2_uc003zwx.3_Missense_Mutation_p.D1283N	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	1283						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			GGTCTACATCGATGGCTCCAT	0.612000													10	47					0	0	0.00136819	0	0
NPR2	4882	broad.mit.edu	37	9	35809185	35809185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:35809185G>A	uc003zyd.2	+	21	3019	c.3019G>A	c.(3019-3021)GAT>AAT	p.D1007N	NPR2_uc010mlb.2_Missense_Mutation_p.D983N|SPAG8_uc003zye.2_Intron	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	1007	Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	TACCACCAAGGATGCCCTAGA	0.542000													27	89					0	0	0.001512	0	0
FAM75A3	727830	broad.mit.edu	37	9	40702725	40702725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:40702725G>A	uc010mmj.2	+	4	411	c.382G>A	c.(382-384)GAA>AAA	p.E128K		NM_001083124	NP_001076593	Q5VYP0	F75A3_HUMAN	hypothetical protein LOC727830	128	Pro-rich.					integral to membrane				ovary(2)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TGAGGTGGGCGAAAGAGCACC	0.602000													7	66					0	0	0.00136819	0	0
RORB	6096	broad.mit.edu	37	9	77257711	77257711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:77257711G>A	uc004aji.2	+	4	699	c.650G>A	c.(649-651)GGG>GAG	p.G217E	RORB_uc004ajh.2_Missense_Mutation_p.G206E	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	217	Hinge (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TTAGCACCAGGGATAACCATG	0.398000													9	57					0	0	0.00136819	0	0
PCSK5	5125	broad.mit.edu	37	9	78794523	78794523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:78794523C>T	uc004ajz.2	+	15	2450	c.1912C>T	c.(1912-1914)CCT>TCT	p.P638S	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_5'Flank	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	638	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TCCCTGCGACCCTGAGTGCAG	0.423000													4	32					0	0	0.000602214	0	0
PRUNE2	158471	broad.mit.edu	37	9	79441574	79441574	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:79441574G>A	uc010mpk.2	-	5	707	c.583C>T	c.(583-585)CTG>TTG	p.L195L	PRUNE2_uc004akn.2_Silent_p.L195L	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	195					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						TTTTCTTCCAGGATAGAAAGA	0.443000													9	47					0	0	0.000274275	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465444	79465444	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:79465444G>A	uc010mpk.2	-	3	403	c.279C>T	c.(277-279)AAC>AAT	p.N93N	PRUNE2_uc004akn.2_Silent_p.N93N	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	93					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GCTGATGCAGGTTAATTTCAT	0.413000													12	72					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	9	90746331	90746331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:90746331C>T	uc011lti.1	-	4	1650	c.1621G>A	c.(1621-1623)GGG>AGG	p.G541R						SubName: Full=cDNA FLJ59639;																		GAGGTCGCCCCCAGAACCTTC	0.522000													17	64					0	0	0.00121646	0	0
Unknown	0	broad.mit.edu	37	9	90746341	90746341	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:90746341C>T	uc011lti.1	-	4	1640	c.1611G>A	c.(1609-1611)GGG>GGA	p.G537G						SubName: Full=cDNA FLJ59639;																		CCAGAACCTTCCCTGGGAAGC	0.542000													13	62					0	0	0.000308642	0	0
C9orf21	195827	broad.mit.edu	37	9	99413953	99413953	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:99413953G>A	uc004awm.2	-	3	339	c.303C>T	c.(301-303)TAC>TAT	p.Y101Y		NM_153698	NP_714542	Q7RTV5	CI021_HUMAN	hypothetical protein LOC195827	101							antioxidant activity|oxidoreductase activity			large_intestine(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CAATATGATGGTAGGATGACT	0.299000													9	91					0	0	0.000978159	0	0
GABBR2	9568	broad.mit.edu	37	9	101073422	101073422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:101073422C>T	uc004ays.2	-	14	2115	c.1959G>A	c.(1957-1959)ATG>ATA	p.M653I		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	653	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	GCCAGATGGTCATATGGGTGT	0.552000													7	34					0	0	0.000274275	0	0
ALG2	85365	broad.mit.edu	37	9	101980325	101980325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:101980325G>A	uc004azf.2	-	2	1212	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F	ALG2_uc004azg.2_Missense_Mutation_p.S288F	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	381					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				GGCTTTTAAGGAAGGTTCACG	0.488000													10	71					0	0	0.000673444	0	0
OR13C3	138803	broad.mit.edu	37	9	107298727	107298727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:107298727G>A	uc004bcb.1	-	1	368	c.368C>T	c.(367-369)TCC>TTC	p.S123F		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	123	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						TCCAGAGAAGGAAATGTTTCT	0.443000													5	47					0	0	0.000602214	0	0
SVEP1	79987	broad.mit.edu	37	9	113173468	113173468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:113173468C>T	uc010mtz.2	-	37	6860	c.6523G>A	c.(6523-6525)GGG>AGG	p.G2175R	SVEP1_uc010mty.2_Missense_Mutation_p.G101R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2175	Sushi 13.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ATGTAGAACCCCTTGTTGCAG	0.532000													10	53					0	0	0.000673444	0	0
MUSK	4593	broad.mit.edu	37	9	113509934	113509934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:113509934C>T	uc004bey.2	+	7	865	c.767C>T	c.(766-768)TCC>TTC	p.S256F	MUSK_uc004bex.2_Missense_Mutation_p.S266F	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	256	Ig-like 3.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TCTTCTGGGTCCATTCAAGAG	0.413000													8	42					0	0	0.000274275	0	0
LPAR1	1902	broad.mit.edu	37	9	113704006	113704006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:113704006C>T	uc004bfa.2	-	4	743	c.488G>A	c.(487-489)CGG>CAG	p.R163Q	LPAR1_uc011lwm.1_Missense_Mutation_p.R164Q|LPAR1_uc004bfb.2_Missense_Mutation_p.R163Q|LPAR1_uc004bfc.2_Missense_Mutation_p.R163Q|LPAR1_uc011lwn.1_Missense_Mutation_p.R145Q|LPAR1_uc011lwo.1_Missense_Mutation_p.R164Q|LPAR1_uc010mub.2_Missense_Mutation_p.R163Q	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	163	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						CACCACTACCCGCCGGTTGCT	0.517000													6	31					0	0	0.00116845	0	0
KIAA1958	158405	broad.mit.edu	37	9	115421633	115421633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:115421633C>T	uc004bgf.1	+	4	1610	c.1435C>T	c.(1435-1437)CAT>TAT	p.H479Y	KIAA1958_uc011lwx.1_Missense_Mutation_p.H507Y	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	479										skin(1)	1						CACCTCGCTCCATGCTATTCG	0.547000													8	31					0	0	0.000157383	0	0
TLR4	7099	broad.mit.edu	37	9	120476546	120476546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:120476546C>T	uc004bjz.2	+	3	2431	c.2140C>T	c.(2140-2142)CCC>TCC	p.P714S	TLR4_uc004bka.2_Missense_Mutation_p.P674S|TLR4_uc004bkb.2_Missense_Mutation_p.P514S	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	714	Cytoplasmic (Potential).|TIR.			P->H,R,E: Abolishes MYD88-binding and LPS-response.	activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGACTTTATTCCCGGTGTGGC	0.493000													5	28					0	0	0.00116845	0	0
C5	727	broad.mit.edu	37	9	123753538	123753538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:123753538C>T	uc004bkv.2	-	23	2902	c.2872G>A	c.(2872-2874)GAG>AAG	p.E958K		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	958					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TATGGGAACTCCTTTCGTCTG	0.338000													16	91					0	0	0.00121646	0	0
PTGS1	5742	broad.mit.edu	37	9	125154609	125154609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:125154609C>T	uc004bmg.1	+	11	1721	c.1586C>T	c.(1585-1587)TCC>TTC	p.S529F	PTGS1_uc011lys.1_Missense_Mutation_p.S467F|PTGS1_uc010mwb.1_Missense_Mutation_p.S383F|PTGS1_uc004bmf.1_Missense_Mutation_p.S492F|PTGS1_uc004bmh.1_Missense_Mutation_p.S420F|PTGS1_uc011lyt.1_Missense_Mutation_p.S420F	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	529		Aspirin-acetylated serine.		S->N: Abolishes cyclooxygenase activity.	cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GCTCCCTTTTCCCTCAAGGGT	0.512000													12	86					0	0	0.000308642	0	0
OR1N2	138882	broad.mit.edu	37	9	125315853	125315853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:125315853G>A	uc011lyx.1	+	1	405	c.405G>A	c.(403-405)ATG>ATA	p.M135I		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	135	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TGGCTGTGATGGCATATGACC	0.502000													11	54					0	0	0.000673444	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377164	125377164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:125377164C>T	uc011lyy.1	+	1	148	c.148C>T	c.(148-150)CTC>TTC	p.L50F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CACACTGATTCTCTCTGCTCC	0.498000													16	75					0	0	0.00121646	0	0
GOLGA2	2801	broad.mit.edu	37	9	131021448	131021448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:131021448G>A	uc011maw.1	-	19	2027	c.2014C>T	c.(2014-2016)CAG>TAG	p.Q672*	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004buh.2_Nonsense_Mutation_p.Q145*	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	672	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						TCCCTCACCTGGGTTTCCTGC	0.632000													4	25					0	0	0.000602214	0	0
ODF2	4957	broad.mit.edu	37	9	131246222	131246222	+	Silent	SNP	A	G	G			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:131246222A>G	uc011mbd.1	+	11	1304	c.993A>G	c.(991-993)CAA>CAG	p.Q331Q	ODF2_uc011maz.1_Silent_p.Q331Q|ODF2_uc011mba.1_Silent_p.Q116Q|ODF2_uc010myb.2_Silent_p.Q307Q|ODF2_uc011mbb.1_Silent_p.Q265Q|ODF2_uc011mbc.1_Silent_p.Q250Q|ODF2_uc004bva.2_Silent_p.Q284Q|ODF2_uc004bvb.2_Silent_p.Q307Q|ODF2_uc011mbe.1_Silent_p.Q326Q|ODF2_uc004bvc.2_Silent_p.Q307Q|ODF2_uc010myc.2_Silent_p.Q274Q|ODF2_uc011mbf.1_Silent_p.Q312Q|ODF2_uc004bvd.3_Silent_p.Q331Q|ODF2_uc004bve.2_Silent_p.Q312Q|uc004bvg.2_5'Flank	NM_002540	NP_002531	Q5BJF6	ODFP2_HUMAN	outer dense fiber of sperm tails 2 isoform 1	331	Potential.				cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centriole|cilium|cytosol|microtubule|spindle pole	protein binding|structural molecule activity			ovary(1)	1						CACAGGCTCAAGCAAAGACAG	0.368000													11	57					0	0	0.000978159	0	0
SURF6	6838	broad.mit.edu	37	9	136201322	136201322	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:136201322C>T	uc004cdb.3	-	2	288	c.210G>A	c.(208-210)TTG>TTA	p.L70L		NM_006753	NP_006744	O75683	SURF6_HUMAN	surfeit 6	70						granular component	DNA binding|RNA binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.16e-06)|Epithelial(140;8.34e-06)|all cancers(34;7.08e-05)		ATTTCTCCCCCAAGGACTTGG	0.557000													13	63					0	0	0.000219431	0	0
COL5A1	1289	broad.mit.edu	37	9	137702115	137702115	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:137702115G>A	uc004cfe.2	+	44	3871	c.3489G>A	c.(3487-3489)GAG>GAA	p.E1163E		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1163	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGATCGGGGAGCCGGGGCAGA	0.592000													10	44					0	0	0.000673444	0	0
ZMYND19	116225	broad.mit.edu	37	9	140477022	140477022	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr9:140477022G>A	uc004cno.1	-	6	879	c.657C>T	c.(655-657)TTC>TTT	p.F219F		NM_138462	NP_612471	Q96E35	ZMY19_HUMAN	zinc finger, MYND domain containing 19	219						Golgi apparatus|plasma membrane	zinc ion binding			skin(1)	1	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000275)|Epithelial(140;0.00047)		GCTCATGCTGGAAGGGACGCT	0.647000													8	40					0	0	0.00136819	0	0
MXRA5	25878	broad.mit.edu	37	X	3238618	3238618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:3238618C>T	uc004crg.3	-	5	5265	c.5108G>A	c.(5107-5109)GGA>GAA	p.G1703E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1703						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTTGTTATTTCCAAACACTTT	0.433000													21	38					0	0	0.00152264	0	0
HCCS	3052	broad.mit.edu	37	X	11133033	11133033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:11133033C>T	uc004cuk.2	+	3	445	c.179C>T	c.(178-180)GCC>GTC	p.A60V	HCCS_uc004cuj.2_Missense_Mutation_p.A60V|HCCS_uc004cul.1_Missense_Mutation_p.A60V	NM_005333	NP_005324	P53701	CCHL_HUMAN	holocytochrome c synthase	60					organ morphogenesis|oxidation-reduction process	mitochondrial inner membrane	holocytochrome-c synthase activity|metal ion binding				0						CAGGAACGCGCCTATGAGTAC	0.468000													10	26					0	0	0.000978159	0	0
FRMPD4	9758	broad.mit.edu	37	X	12712497	12712497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:12712497G>A	uc004cuz.1	+	9	1363	c.857G>A	c.(856-858)CGA>CAA	p.R286Q	FRMPD4_uc011mij.1_Missense_Mutation_p.R278Q	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	286	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding	p.R286Q(1)		central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TGTCTTTTCCGAATTAGCTTC	0.428000													11	16					0	0	0.000978159	0	0
PHKA2	5256	broad.mit.edu	37	X	18942596	18942596	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:18942596G>A	uc004cyv.3	-	16	2047	c.1617C>T	c.(1615-1617)ATC>ATT	p.I539I	PHKA2_uc010nfg.1_Intron	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	539					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					GCATCTCCACGATCATCTCAT	0.552000													10	24					0	0	0.000442599	0	0
MAP3K15	389840	broad.mit.edu	37	X	19389505	19389505	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:19389505G>A	uc004czk.1	-	24	3314	c.1677C>T	c.(1675-1677)TCC>TCT	p.S559S	MAP3K15_uc004czj.1_Silent_p.S519S|MAP3K15_uc004czi.1_Silent_p.S18S	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1084							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					TCTGACTGATGGACGAGCTGT	0.532000													8	37					0	0	0.000274275	0	0
FAM47B	170062	broad.mit.edu	37	X	34961618	34961618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:34961618C>T	uc004ddi.1	+	1	688	c.670C>T	c.(670-672)CGC>TGC	p.R224C		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	224	Pro-rich.									ovary(3)|breast(1)	4						GTCCAGTCTCCGCCCAGAGCC	0.657000													6	15					0	0	0.00116845	0	0
FAM47C	442444	broad.mit.edu	37	X	37027432	37027432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:37027432C>T	uc004ddl.1	+	1	963	c.949C>T	c.(949-951)CAT>TAT	p.H317Y		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	317										ovary(3)	3						ACGCGTATCTCATCTCCGCCC	0.612000													7	26					0	0	8.12818e-05	0	0
MAOA	4128	broad.mit.edu	37	X	43542827	43542827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:43542827G>A	uc004dfy.2	+	2	321	c.140G>A	c.(139-141)AGG>AAG	p.R47K	MAOA_uc011mkw.1_5'UTR	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	47	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	GCTCGGGACAGGGTTGGAGGA	0.373000													10	26					0	0	0.00136819	0	0
CACNA1F	778	broad.mit.edu	37	X	49089751	49089751	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:49089751C>T	uc004dnb.2	-	1	83	c.21G>A	c.(19-21)GGG>GGA	p.G7G	CACNA1F_uc010nip.2_Silent_p.G7G|CCDC22_uc011mna.1_5'Flank|CCDC22_uc004dnc.1_5'Flank|CCDC22_uc004dnd.1_5'Flank	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	7	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TCTCACCTTTCCCGCCTTCAG	0.592000													4	16					0	0	0.00116845	0	0
GAGE2A	729447	broad.mit.edu	37	X	49355815	49355815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:49355815G>A	uc004doi.3	+	3	194	c.97G>A	c.(97-99)GAT>AAT	p.D33N	GAGE1_uc011mnu.1_Intron|GAGE1_uc004doj.2_Intron	NM_001127212	NP_001120684	Q6NT46	GAG2A_HUMAN	G antigen 2A	33											0	Ovarian(276;0.236)					GCAGTTCAGTGATGAAGTGGA	0.458000													11	132					0	0	0.000308642	0	0
Unknown	0	broad.mit.edu	37	X	51150672	51150672	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:51150672C>T	uc004dpj.2	+	1	906	c.804C>T	c.(802-804)CGC>CGT	p.R268R		NM_203407	NP_981952			hypothetical protein LOC340602																		GCCCTGCCCGCCGAGGCCGTG	0.711000													4	4					0	0	0.000602214	0	0
LPAR4	2846	broad.mit.edu	37	X	78010720	78010720	+	Silent	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:78010720C>T	uc010nme.2	+	2	759	c.354C>T	c.(352-354)TTC>TTT	p.F118F		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	118	Helical; Name=3; (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						GAACTGCATTCCTTACCAACA	0.418000													9	17					0	0	0.000673444	0	0
POF1B	79983	broad.mit.edu	37	X	84561284	84561284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:84561284G>A	uc004eer.2	-	12	1366	c.1220C>T	c.(1219-1221)TCT>TTT	p.S407F	POF1B_uc004ees.2_Missense_Mutation_p.S407F	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	407	Potential.						actin binding				0						ATGTCGAAGAGAGAGATTGTT	0.348000													9	21					0	0	0.000978159	0	0
TEX13A	56157	broad.mit.edu	37	X	104464113	104464113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:104464113C>T	uc004ema.2	-	5	875	c.763G>A	c.(763-765)GAA>AAA	p.E255K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Silent_p.R255R	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	255						intracellular	zinc ion binding			ovary(2)	2						GTGTACTTTTCCTGATCAGCA	0.577000													5	16					0	0	0.000602214	0	0
NRK	203447	broad.mit.edu	37	X	105181565	105181565	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:105181565A>T	uc004emd.2	+	22	4093	c.3790A>T	c.(3790-3792)ACC>TCC	p.T1264S	NRK_uc010npc.1_Missense_Mutation_p.T932S	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1264	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TTTGCTGATTACCATCTCAGG	0.373000										HNSCC(51;0.14)			5	9					0	0	0.00116845	0	0
CLDN2	9075	broad.mit.edu	37	X	106171884	106171884	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:106171884G>A	uc004emq.1	+	2	945	c.426G>A	c.(424-426)GGG>GGA	p.G142G	MORC4_uc004emp.3_Intron|CLDN2_uc004emt.1_Silent_p.G142G	NM_020384	NP_065117	P57739	CLD2_HUMAN	claudin 2	142	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						ATCTTCATGGGATCCTACGGG	0.502000													21	33					0	0	0.00047179	0	0
COL4A5	1287	broad.mit.edu	37	X	107814676	107814676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:107814676C>T	uc004enz.1	+	7	620	c.418C>T	c.(418-420)CCT>TCT	p.P140S	COL4A5_uc011mso.1_Missense_Mutation_p.P140S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	140	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCCCGGTTTTCCTGGTTTACA	0.388000									Alport_syndrome_with_Diffuse_Leiomyomatosis				26	64					0	0	0.00178596	0	0
KIAA1210	57481	broad.mit.edu	37	X	118222828	118222828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:118222828C>T	uc004era.3	-	11	2365	c.2365G>A	c.(2365-2367)GAG>AAG	p.E789K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	789										ovary(4)|skin(1)	5						CCATCCCCCTCCTCAGGAATA	0.453000													9	13					0	0	0.00136819	0	0
GRIA3	2892	broad.mit.edu	37	X	122551547	122551547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:122551547C>T	uc004etq.3	+	12	2088	c.1795C>T	c.(1795-1797)CCT>TCT	p.P599S	GRIA3_uc004etr.3_Missense_Mutation_p.P599S|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Missense_Mutation_p.P583S	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	599	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCCTCCTGATCCTCCAAATGA	0.418000													20	18					0	0	0.00152264	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969271	140969271	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:140969271C>T	uc011mwp.1	+	4	598	c.598C>T	c.(598-600)CAA>TAA	p.Q200*		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	200	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCTCAAATATCAAGCAAAAGA	0.458000													22	43					0	0	0.00106085	0	0
SLITRK4	139065	broad.mit.edu	37	X	142718884	142718884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:142718884G>A	uc004fbx.2	-	2	417	c.41C>T	c.(40-42)TCT>TTT	p.S14F	SLITRK4_uc004fby.2_Missense_Mutation_p.S14F	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	14						integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATTTGTCGAAGAAATCAGGGC	0.378000													8	13					0	0	0.000157383	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798377	148798377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:148798377C>T	uc004fdq.2	+	5	1333	c.1231C>T	c.(1231-1233)CCC>TCC	p.P411S	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.P382S	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	411	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					TGGGAGGGATCCCACTTCTTA	0.547000													23	33					0	0	0.000375601	0	0
PASD1	139135	broad.mit.edu	37	X	150839561	150839561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:150839561G>A	uc004fev.3	+	12	1455	c.1123G>A	c.(1123-1125)GAA>AAA	p.E375K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	375	Potential.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGGAACTGGAACTGATGAA	0.443000													20	61					0	0	0.000229342	0	0
PASD1	139135	broad.mit.edu	37	X	150842617	150842617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:150842617G>A	uc004fev.3	+	15	2466	c.2134G>A	c.(2134-2136)GAT>AAT	p.D712N		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	712						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TTGGTCTTGCGATGAGCAGGG	0.567000													10	32					0	0	0.000673444	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092175	151092175	+	Silent	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:151092175G>A	uc004fez.2	+	3	195	c.39G>A	c.(37-39)GAG>GAA	p.E13E	MAGEA4_uc004ffa.2_Silent_p.E13E|MAGEA4_uc004ffb.2_Silent_p.E13E|MAGEA4_uc004ffc.2_Silent_p.E13E|MAGEA4_uc004ffd.2_Silent_p.E13E	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	13							protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCAAGCCTGAGGAAGGCGTTG	0.602000													6	14					0	0	0.000274275	0	0
GABRE	2564	broad.mit.edu	37	X	151138795	151138795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:151138795C>T	uc004ffi.2	-	2	190	c.136G>A	c.(136-138)GAA>AAA	p.E46K	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	46	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTGATTTTCCAGAGGCTGG	0.502000													17	52					0	0	0.00152264	0	0
GABRA3	2556	broad.mit.edu	37	X	151336803	151336803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:151336803G>A	uc010ntk.1	-	10	1616	c.1376C>T	c.(1375-1377)TCC>TTC	p.S459F		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	459	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GATGATGCGGGAAATTTTGTC	0.498000													12	27					0	0	0.000151284	0	0
MAGEA1	4100	broad.mit.edu	37	X	152482212	152482212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrX:152482212C>T	uc004fhf.2	-	3	1019	c.799G>A	c.(799-801)GGT>AGT	p.G267S		NM_004988	NP_004979	P43355	MAGA1_HUMAN	melanoma antigen family A, 1	267	MAGE.					cytoplasm|plasma membrane				central_nervous_system(7)|ovary(1)|lung(1)|breast(1)	10	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCCTTGGACCCCACAGGAAC	0.552000													14	30					0	0	0.000151284	0	0
PCDH11Y	83259	broad.mit.edu	37	Y	4925192	4925192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chrY:4925192G>A	uc004fqo.2	+	1	1062	c.328G>A	c.(328-330)GAA>AAA	p.E110K	PCDH11Y_uc010nwg.1_Missense_Mutation_p.E99K|PCDH11Y_uc004fql.1_Missense_Mutation_p.E99K|PCDH11Y_uc004fqm.1_Missense_Mutation_p.E99K|PCDH11Y_uc004fqn.1_Missense_Mutation_p.E110K	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	110	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						GATTCGAATTGAAGAGGATAC	0.448000													17	33					0	0	0.000958276	0	0
RERE	473	broad.mit.edu	37	1	8418745	8418745	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr1:8418745delG	uc001ape.2	-	21	4660	c.3850delC	c.(3850-3852)CTGfs	p.L1284fs	RERE_uc001apf.2_Frame_Shift_Del_p.L1284fs|RERE_uc001apd.2_Frame_Shift_Del_p.L730fs	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1284					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		TAGGCCAGCAGGGGGTCCGTG	0.672													17	39	---	---	---	---					
BRD7	29117	broad.mit.edu	37	16	50357512	50357512	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:50357512delG	uc002egf.1	-	13	1496	c.1429delC	c.(1429-1431)CAAfs	p.Q477fs	BRD7_uc002ege.1_Frame_Shift_Del_p.Q477fs	NM_013263	NP_037395	Q9NPI1	BRD7_HUMAN	bromodomain containing 7	477					cell cycle|negative regulation of cell proliferation|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of histone acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleus	histone acetyl-lysine binding|p53 binding|transcription coactivator activity|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding				0		all_cancers(37;0.0127)				TCCATCTCTTGTAGGGTCCTG	0.403													7	34	---	---	---	---					
ANKRD11	29123	broad.mit.edu	37	16	89349891	89349895	+	Frame_Shift_Del	DEL	TTCCT	-	-			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr16:89349891_89349895delTTCCT	uc002fmx.1	-	9	3516_3520	c.3055_3059delAGGAA	c.(3055-3060)AGGAAGfs	p.R1019fs	ANKRD11_uc002fmy.1_Frame_Shift_Del_p.R1019fs|ANKRD11_uc002fnc.1_Frame_Shift_Del_p.R1019fs|ANKRD11_uc002fnb.1_Frame_Shift_Del_p.R976fs	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1019_1020	Lys-rich.					nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		TGTCTTCTCCTTCCTTTCCTTATCG	0.483													31	119	---	---	---	---					
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	-	-	rs76272937		TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:12046124_12046126delAGC	uc003bwm.2	+	1	263_265	c.99_101delAGC	c.(97-102)CAACCG>CAG	p.P40del	SYN2_uc003bwl.1_In_Frame_Del_p.P40del	NM_133625	NP_598328	Q92777	SYN2_HUMAN	synapsin II isoform IIa	40					neurotransmitter secretion	synaptic vesicle	ATP binding|ligase activity			ovary(1)|central_nervous_system(1)	2						AGCCCCAGCAAGCGCCGAcgccg	0.345													3	4	---	---	---	---					
RAD54L2	23132	broad.mit.edu	37	3	51675762	51675765	+	Splice_Site	DEL	CAGC	-	-			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr3:51675762_51675765delCAGC	uc011bdt.1	+	14	2357	c.2232_splice	c.e14-1	p.S744_splice	RAD54L2_uc003dbh.2_Splice_Site_p.S335_splice|RAD54L2_uc011bdu.1_Splice_Site_p.S438_splice|RAD54L2_uc003dbj.2_Splice_Site_p.S70_splice	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2							nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		TTTTCTGTTTCAGCCAGAGTCTTT	0.495													2	4	---	---	---	---					
FEZF1	389549	broad.mit.edu	37	7	121942979	121942980	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A183-06A-11D-A196-08	TCGA-EE-A183-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	f761a03e-2d52-41a7-85fb-c5ab379f9b6b	173c12cd-5c9d-4c23-a427-696a9a0adf39	g.chr7:121942979_121942980insT	uc003vkd.2	-	3	1016_1017	c.942_943insA	c.(940-945)AAACCTfs	p.K314fs	FEZF1_uc003vkc.2_Frame_Shift_Ins_p.K264fs|uc010lko.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	314_315					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						CATTTGTGAGGTTTTTCCTAAG	0.371													17	148	---	---	---	---					
