Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3328920	3328920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:3328920C>T	uc001akf.2	+	9	2239	c.2159C>T	c.(2158-2160)CCC>CTC	p.P720L	PRDM16_uc001akc.2_Missense_Mutation_p.P720L|PRDM16_uc001akd.2_Missense_Mutation_p.P720L|PRDM16_uc001ake.2_Missense_Mutation_p.P720L|PRDM16_uc009vlh.2_Missense_Mutation_p.P421L	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	720	Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GGCTCGCTCCCCTACCACTCG	0.637			T	EVI1	MDS|AML								5	26					0	0	0.000602	0	0
PRDM16	63976	broad.mit.edu	37	1	3348622	3348622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:3348622C>T	uc001akf.2	+	16	3694	c.3614C>T	c.(3613-3615)GCA>GTA	p.A1205V	PRDM16_uc001akc.2_Missense_Mutation_p.A1204V|PRDM16_uc001akd.2_Missense_Mutation_p.A1204V|PRDM16_uc001ake.2_Missense_Mutation_p.A1205V|PRDM16_uc009vlh.2_Missense_Mutation_p.A905V	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1205	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GCTGAGGAAGCATTTGAAGTT	0.527			T	EVI1	MDS|AML								10	35					0	0	0.000443	0	0
SLC2A7	155184	broad.mit.edu	37	1	9074868	9074868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:9074868C>T	uc009vmo.1	-	7	775	c.775G>A	c.(775-777)GAG>AAG	p.E259K		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	259	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		GCCCGGGCCTCCGCACGCATG	0.687													3	2					0	0	0.004672	0	0
KIF1B	23095	broad.mit.edu	37	1	10332333	10332333	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:10332333T>G	uc001aqx.3	+	9	1035	c.833T>G	c.(832-834)TTG>TGG	p.L278W	KIF1B_uc001aqv.3_Missense_Mutation_p.L278W|KIF1B_uc001aqw.3_Missense_Mutation_p.L278W|KIF1B_uc001aqy.2_Missense_Mutation_p.L278W|KIF1B_uc001aqz.2_Missense_Mutation_p.L278W|KIF1B_uc001ara.2_Missense_Mutation_p.L278W|KIF1B_uc001arb.2_Missense_Mutation_p.L278W|KIF1B_uc009vmt.2_RNA	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	278	Kinesin-motor.|Interaction with KBP.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CTTACAACTTTGGGCAAAGTC	0.318													5	71					0	0	0.000602	0	0
FBXO42	54455	broad.mit.edu	37	1	16577797	16577797	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:16577797G>A	uc001ayg.2	-	10	1738	c.1522C>T	c.(1522-1524)CCC>TCC	p.P508S	FBXO42_uc001aye.3_Missense_Mutation_p.P226S|FBXO42_uc001ayf.2_Missense_Mutation_p.P415S	NM_018994	NP_061867	Q6P3S6	FBX42_HUMAN	F-box protein 42	508										upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		CTGGAAGCGGGTTTCAGATCC	0.488													5	53					0	0	0.001168	0	0
ATP13A2	23400	broad.mit.edu	37	1	17322554	17322554	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:17322554G>A	uc001baa.2	-	15	1649	c.1459C>T	c.(1459-1461)CGA>TGA	p.R487*	ATP13A2_uc001bab.2_Nonsense_Mutation_p.R482*|ATP13A2_uc001bac.2_Nonsense_Mutation_p.R482*|ATP13A2_uc009vpa.1_Nonsense_Mutation_p.R163*|ATP13A2_uc001bad.1_Nonsense_Mutation_p.R200*	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	487	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		CTCCGCAGTCGGCTCTGGGCG	0.622													6	46					0	0	0.001984	0	0
UBR4	23352	broad.mit.edu	37	1	19441953	19441954	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:19441953_19441954GG>AA	uc001bbi.2	-	74	11005_11006	c.11001_11002CC>TT	c.(10999-11004)GTCCCT>GTTTCT	p.P3668S	UBR4_uc001bbj.1_Missense_Mutation_p.P83S	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3668					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GGGTTGGCAGGGACCGAGGCAC	0.54													6	37					0	0	0.004672	0	0
TMCO4	255104	broad.mit.edu	37	1	20066390	20066390	+	Missense_Mutation	SNP	G	A	A	rs145902797		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:20066390G>A	uc001bcn.2	-	12	1348	c.1106C>T	c.(1105-1107)CCC>CTC	p.P369L	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Missense_Mutation_p.P369L|TMCO4_uc001bcp.1_Missense_Mutation_p.P329L	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	369						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		CACCCCCCAGGGGTTGTCGAT	0.617													5	36					0	0	0.001984	0	0
NBPF3	84224	broad.mit.edu	37	1	21799391	21799391	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:21799391G>A	uc001ber.2	+	6	1067	c.717G>A	c.(715-717)CAG>CAA	p.Q239Q	NBPF3_uc001bes.2_Silent_p.Q183Q|NBPF3_uc009vqb.2_Silent_p.Q239Q|NBPF3_uc010odm.1_Silent_p.Q169Q	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	239	NBPF 1.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGAAAGTACAGGAATTATATG	0.413													7	30					0	0	0.003080	0	0
E2F2	1870	broad.mit.edu	37	1	23850914	23850915	+	Missense_Mutation	DNP	CC	TA	TA	rs67197567		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:23850914_23850915CC>TA	uc001bhe.1	-	2	746_747	c.318_319GG>TA	c.(316-321)AAGGGG>AATAGG	p.106_107KG>NR	uc001bhf.1_5'Flank	NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	106_107	Potential.				G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		ATGCACTTCCCCTTGGGGGTTG	0.624													8	15					0	0	0.004672	0	0
EIF2C4	192670	broad.mit.edu	37	1	36307284	36307284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:36307284G>A	uc001bzj.1	+	15	2298	c.2108G>A	c.(2107-2109)GGA>GAA	p.G703E		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	703	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TACCGGCCAGGAATAACTTAT	0.358													10	62					0	0	0.000673	0	0
GRIK3	2899	broad.mit.edu	37	1	37324727	37324727	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:37324727G>C	uc001caz.2	-	7	1221	c.1086C>G	c.(1084-1086)TTC>TTG	p.F362L	GRIK3_uc001cba.1_Missense_Mutation_p.F362L	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	362	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	TGAAGTTCATGAAGCGGCCGC	0.542													3	40					0	0	0.004672	0	0
EPHA10	284656	broad.mit.edu	37	1	38227564	38227564	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:38227564G>A	uc009vvi.2	-	3	449	c.363C>T	c.(361-363)ACC>ACT	p.T121T	EPHA10_uc001cbw.3_Silent_p.T121T	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	121	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCTCCTTGCAGGTACCCGCGG	0.652													9	57					0	0	0.000443	0	0
ZNF684	127396	broad.mit.edu	37	1	41012390	41012390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:41012390C>T	uc001cft.1	+	5	646	c.395C>T	c.(394-396)TCA>TTA	p.S132L		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	132					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			AGAAAAAAATCATATAAATCG	0.313													11	31					0	0	0.001368	0	0
CCDC30	728621	broad.mit.edu	37	1	43055041	43055042	+	Missense_Mutation	DNP	TT	CC	CC			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:43055041_43055042TT>CC	uc009vwk.1	+	9	1380_1381	c.1270_1271TT>CC	c.(1270-1272)TTA>CCA	p.L424P	CCDC30_uc001chm.2_Missense_Mutation_p.L122P|CCDC30_uc001chn.2_Missense_Mutation_p.L213P|CCDC30_uc001chp.2_Missense_Mutation_p.L238P	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	424	Potential.										0						AGTGAGAACCTTACAAGATAAA	0.356													7	36					0	0	0.004672	0	0
TIE1	7075	broad.mit.edu	37	1	43772851	43772851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:43772851G>A	uc001ciu.2	+	5	758	c.679G>A	c.(679-681)GAG>AAG	p.E227K	TIE1_uc010okd.1_Missense_Mutation_p.E227K|TIE1_uc010oke.1_Missense_Mutation_p.E182K|TIE1_uc009vwq.2_Intron|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'UTR|TIE1_uc010okc.1_Missense_Mutation_p.E227K	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	227	Extracellular (Potential).|EGF-like 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				CTGTACCAAGGAGTGCCCAGG	0.622													5	34					0	0	0.000602	0	0
ELAVL4	1996	broad.mit.edu	37	1	50610828	50610828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:50610828G>A	uc001csb.2	+	2	477	c.209G>A	c.(208-210)GGT>GAT	p.G70D	ELAVL4_uc001cry.3_Missense_Mutation_p.G73D|ELAVL4_uc001crz.3_Missense_Mutation_p.G70D|ELAVL4_uc001csa.3_Missense_Mutation_p.G87D|ELAVL4_uc001csc.3_Missense_Mutation_p.G70D|ELAVL4_uc009vyu.2_Missense_Mutation_p.G75D|ELAVL4_uc010omz.1_Missense_Mutation_p.G75D	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	70	RRM 1.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						GGGAGCATTGGTGAAATAGAA	0.423													7	47					0	0	0.003080	0	0
PCSK9	255738	broad.mit.edu	37	1	55525220	55525220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:55525220C>T	uc001cyf.1	+	10	1856	c.1565C>T	c.(1564-1566)GCC>GTC	p.A522V	PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	522			A -> T.		cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GGTGTCTACGCCATTGCCAGG	0.607													25	94					0	0	0.005443	0	0
AGL	178	broad.mit.edu	37	1	100327208	100327208	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:100327208G>A	uc001dsi.1	+	3	632	c.232G>A	c.(232-234)GAT>AAT	p.D78N	AGL_uc001dsj.1_Missense_Mutation_p.D78N|AGL_uc001dsk.1_Missense_Mutation_p.D78N|AGL_uc001dsl.1_Missense_Mutation_p.D78N|AGL_uc001dsm.1_Missense_Mutation_p.D62N|AGL_uc001dsn.1_Missense_Mutation_p.D61N	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	78	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		AGATGATTCTGATAAATACTG	0.323													6	44					0	0	0.001168	0	0
KIAA1324	57535	broad.mit.edu	37	1	109731788	109731788	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:109731788G>A	uc001dwq.2	+	11	1456	c.1320G>A	c.(1318-1320)GGG>GGA	p.G440G	KIAA1324_uc009wex.1_Silent_p.G390G|KIAA1324_uc009wey.2_Silent_p.G353G|KIAA1324_uc010ovg.1_Silent_p.G338G|KIAA1324_uc001dwr.2_Silent_p.G90G	NM_020775	NP_065826	Q6UXG2	K1324_HUMAN	hypothetical protein LOC57535 precursor	440	Extracellular (Potential).				macroautophagy|positive regulation of vacuole organization|regulation of apoptosis	integral to plasma membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	5		all_epithelial(167;0.000102)|all_lung(203;0.000323)|Lung NSC(277;0.00063)		Colorectal(144;0.0188)|Lung(183;0.0527)|COAD - Colon adenocarcinoma(174;0.14)|Epithelial(280;0.21)|all cancers(265;0.249)		TTCTCAGTGGGATCAACTTCG	0.522													10	30					0	0	0.000443	0	0
WDR3	10885	broad.mit.edu	37	1	118501935	118501935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:118501935G>A	uc010oxe.1	+	27	2763	c.2697G>A	c.(2695-2697)ATG>ATA	p.M899I	WDR3_uc001ehi.2_Intron|SPAG17_uc001ehk.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	899						nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		GCTTCAATATGGCTGGTCTTG	0.353													12	33					0	0	0.002450	0	0
CRNN	49860	broad.mit.edu	37	1	152382619	152382619	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:152382619G>A	uc001ezx.2	-	3	1013	c.939C>T	c.(937-939)ACC>ACT	p.T313T		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	313	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGGGTGCTGGTGCTTCCTG	0.607													10	155					0	0	0.000673	0	0
ATP8B2	57198	broad.mit.edu	37	1	154317975	154317975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:154317975C>T	uc001fex.2	+	23	2747	c.2747C>T	c.(2746-2748)ACC>ATC	p.T916I		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	902	Helical; (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			TTTGCTTTCACCATGGTCCAC	0.433											OREG0013835	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	66	146					0	0	0.003610	0	0
IFI16	3428	broad.mit.edu	37	1	158988354	158988354	+	Silent	SNP	C	T	T	rs149200088		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:158988354C>T	uc001ftf.1	+	6	1492	c.885C>T	c.(883-885)ATC>ATT	p.I295I	IFI16_uc001ftg.2_Silent_p.I295I|IFI16_uc010pis.1_Silent_p.I239I	NM_005531	NP_005522	Q16666	IF16_HUMAN	interferon, gamma-inducible protein 16	295	HIN-200 1.				cell proliferation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|monocyte differentiation|negative regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	cytoplasm|nuclear speck|nucleolus	double-stranded DNA binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)					ATAAAATCATCAACAGAGCAA	0.353													14	36					0	0	0.002450	0	0
C1orf192	257177	broad.mit.edu	37	1	161335340	161335340	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:161335340C>T	uc001gal.2	-	4	330	c.324G>A	c.(322-324)GGG>GGA	p.G108G		NM_001013625	NP_001013647	Q5VTH2	CA192_HUMAN	hypothetical protein LOC257177	108											0	all_cancers(52;4.64e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAGGACACAGCCCATTGGAGG	0.458													47	85					0	0	0.003610	0	0
TBX19	9095	broad.mit.edu	37	1	168282099	168282099	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:168282099G>A	uc001gfl.2	+	8	1257	c.1206G>A	c.(1204-1206)TCG>TCA	p.S402S	TBX19_uc001gfj.3_Silent_p.S270S|TBX19_uc001gfm.2_Silent_p.S105S	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	402					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					CACCCACTTCGGCTGGTGTGG	0.652													10	26					0	0	0.001368	0	0
C1orf105	92346	broad.mit.edu	37	1	172434488	172434488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:172434488G>A	uc001gik.2	+	6	587	c.391G>A	c.(391-393)GAT>AAT	p.D131N		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	131										skin(1)	1						GCCTTTCCATGATGACATCCC	0.368													8	70					0	0	0.000443	0	0
KIAA1614	57710	broad.mit.edu	37	1	180885966	180885966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:180885966C>T	uc001gok.2	+	2	794	c.727C>T	c.(727-729)CCT>TCT	p.P243S		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	243										ovary(3)|skin(1)	4						AAGGTCCTACCCTTTTCCAGA	0.587													52	76					0	0	0.003610	0	0
LAMC1	3915	broad.mit.edu	37	1	183087213	183087213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:183087213C>T	uc001gpy.3	+	11	2179	c.1922C>T	c.(1921-1923)CCT>CTT	p.P641L		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	641	Laminin IV type A.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCTCTTACCCCTTTTGAATTT	0.423													34	85					0	0	0.003271	0	0
FAM5C	339479	broad.mit.edu	37	1	190250796	190250796	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:190250796G>A	uc001gse.1	-	3	553	c.321C>T	c.(319-321)TTC>TTT	p.F107F	FAM5C_uc010pot.1_Intron	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	107						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGTTGCGGAAGAATTCAGGGG	0.433													13	20					0	0	0.004007	0	0
CFHR4	10877	broad.mit.edu	37	1	196887503	196887503	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:196887503G>A	uc001gto.2	+	6	1032	c.963G>A	c.(961-963)AGG>AGA	p.R321R	CFHR4_uc009wyy.2_Silent_p.R567R|CFHR4_uc001gtp.2_Silent_p.R568R	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	321	Sushi 5.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						CAGTGTGTAGGGAAGGCATAG	0.378													8	72					0	0	0.000673	0	0
PPP1R12B	4660	broad.mit.edu	37	1	202531961	202531961	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:202531961T>G	uc001gya.1	+	20	2707	c.2563T>G	c.(2563-2565)TCA>GCA	p.S855A	PPP1R12B_uc001gxz.1_Missense_Mutation_p.S855A|PPP1R12B_uc001gyb.1_Missense_Mutation_p.S81A|PPP1R12B_uc001gyc.1_Missense_Mutation_p.S81A	NM_002481	NP_002472	O60237	MYPT2_HUMAN	protein phosphatase 1, regulatory (inhibitor)	855					regulation of muscle contraction|signal transduction	cytoplasm	enzyme activator activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(75;0.166)			TGACCGGGCTTCAGCAAGAGC	0.483													4	87					0	0	0.001984	0	0
KCTD3	51133	broad.mit.edu	37	1	215777580	215777580	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:215777580G>A	uc001hks.2	+	13	1539	c.1245G>A	c.(1243-1245)CAG>CAA	p.Q415Q	KCTD3_uc001hkt.2_Silent_p.Q415Q|KCTD3_uc010pub.1_Silent_p.Q313Q|KCTD3_uc009xdn.2_Silent_p.Q167Q	NM_016121	NP_057205	Q9Y597	KCTD3_HUMAN	potassium channel tetramerisation domain	415						voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			ovary(3)	3				all cancers(67;0.0164)|OV - Ovarian serous cystadenocarcinoma(81;0.019)|GBM - Glioblastoma multiforme(131;0.0862)|Epithelial(68;0.13)		AGCTTTTTCAGACTTTCACAG	0.448													27	46					0	0	0.001061	0	0
PARP1	142	broad.mit.edu	37	1	226564912	226564912	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:226564912T>C	uc001hqd.3	-	13	2009	c.1838A>G	c.(1837-1839)CAC>CGC	p.H613R		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	613				H -> Q (in Ref. 3; AAA60155).	cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		TTTCATGAAGTGCTCAATGGC	0.478								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					8	235					0	0	0.004482	0	0
SLC35F3	148641	broad.mit.edu	37	1	234452464	234452465	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:234452464_234452465CC>TT	uc001hwa.1	+	4	966_967	c.738_739CC>TT	c.(736-741)GCCCTC>GCTTTC	p.L247F	SLC35F3_uc001hvy.1_Missense_Mutation_p.L316F	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	247	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CGATGTCTGCCCTCTACAAGGT	0.574													8	59					0	0	0.004672	0	0
OR2M5	127059	broad.mit.edu	37	1	248309207	248309207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr1:248309207G>A	uc010pze.1	+	1	758	c.758G>A	c.(757-759)GGA>GAA	p.G253E		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			ATGTACTATGGAGCAGGTTTG	0.498													39	78					0	0	0.001951	0	0
FBXO18	84893	broad.mit.edu	37	10	5958258	5958258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr10:5958258C>T	uc001iis.2	+	10	1722	c.1627C>T	c.(1627-1629)CTT>TTT	p.L543F	FBXO18_uc001iir.2_Missense_Mutation_p.L469F|FBXO18_uc009xig.2_Missense_Mutation_p.L469F|FBXO18_uc001iit.2_Missense_Mutation_p.L594F	NM_178150	NP_835363	Q8NFZ0	FBX18_HUMAN	F-box only protein, helicase, 18 isoform 2	543					DNA repair	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(2)|skin(1)	3						CAACTCCGTCCTTGCTGAAGG	0.473													7	48					0	0	0.003080	0	0
HECTD2	143279	broad.mit.edu	37	10	93220272	93220273	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr10:93220272_93220273CC>TT	uc001khl.2	+	3	457_458	c.357_358CC>TT	c.(355-360)GTCCTT>GTTTTT	p.L120F	LOC100188947_uc010qnl.1_Intron|HECTD2_uc001khk.2_Missense_Mutation_p.L120F|HECTD2_uc010qnm.1_Missense_Mutation_p.L120F|HECTD2_uc001khm.2_RNA|HECTD2_uc009xty.1_5'Flank	NM_182765	NP_877497	Q5U5R9	HECD2_HUMAN	HECT domain containing 2 isoform a	120					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			skin(1)	1						AGGCCCCAGTCCTTCCAGAACC	0.406													16	50					0	0	0.004672	0	0
CYP2C19	1557	broad.mit.edu	37	10	96612560	96612560	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr10:96612560G>A	uc010qnz.1	+	9	1362	c.1362G>A	c.(1360-1362)CAG>CAA	p.Q454Q	CYP2C19_uc010qny.1_Silent_p.Q432Q	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	454					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCATTTTACAGAACTTTAACC	0.448													13	54					0	0	0.002450	0	0
ACSL5	51703	broad.mit.edu	37	10	114169274	114169274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr10:114169274C>T	uc001kzs.2	+	7	683	c.542C>T	c.(541-543)GCC>GTC	p.A181V	ACSL5_uc001kzt.2_Missense_Mutation_p.A181V|ACSL5_uc001kzu.2_Missense_Mutation_p.A237V|ACSL5_uc009xxz.2_Missense_Mutation_p.A181V|ACSL5_uc010qrj.1_5'UTR	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	181	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		GCTGATATCGCCATGGTGATC	0.473													13	72					0	0	0.003163	0	0
MUC5B	727897	broad.mit.edu	37	11	1254364	1254364	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:1254364G>A	uc009ycr.1	+	34	4290	c.4164G>A	c.(4162-4164)GTG>GTA	p.V1388V	MUC5B_uc009yct.1_Silent_p.V729V|MUC5B_uc001ltb.2_Silent_p.V732V|MUC5B_uc001lta.2_Silent_p.V397V	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	729	TIL 2.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TCGTGCCTGTGGACGGCTGCA	0.697													4	12					0	0	0.000248	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642682	1642682	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:1642682G>A	uc009ycy.1	-	4	867	c.780C>T	c.(778-780)TCC>TCT	p.S260S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	274	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AACTAGACTGGGAGCAGCAGG	0.572													7	56					0	0	0.000443	0	0
ABCC8	6833	broad.mit.edu	37	11	17427101	17427101	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:17427101C>T	uc001mnc.2	-	27	3465	c.3339G>A	c.(3337-3339)GAG>GAA	p.E1113E		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1113	Cytoplasmic (By similarity).|ABC transmembrane type-1 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGGGCGTGGTCTCAAAAAACC	0.448													25	141					0	0	0.004656	0	0
ABCC8	6833	broad.mit.edu	37	11	17427103	17427103	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:17427103C>A	uc001mnc.2	-	27	3463	c.3337G>T	c.(3337-3339)GAG>TAG	p.E1113*		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1113	Cytoplasmic (By similarity).|ABC transmembrane type-1 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGCGTGGTCTCAAAAAACCTA	0.448													27	136					7.01153e-11	3.16706e-10	0.001271	1	0
SAAL1	113174	broad.mit.edu	37	11	18101970	18101970	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:18101970G>A	uc001mnq.2	-	12	1451	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F	SAAL1_uc001mnr.2_Silent_p.F466F|SAAL1_uc001mns.2_RNA|SAAL1_uc009yhf.2_Silent_p.F469F	NM_138421	NP_612430	Q96ER3	SAAL1_HUMAN	serum amyloid A-like 1	467					acute-phase response	extracellular region	binding				0						TCAAACTTGGGAAGTTTTTTT	0.328													7	47					0	0	0.004482	0	0
GAS2	2620	broad.mit.edu	37	11	22833509	22833509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:22833509G>A	uc009yie.2	+	8	1195	c.889G>A	c.(889-891)GAT>AAT	p.D297N	GAS2_uc001mqm.2_Missense_Mutation_p.D297N|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.D297N	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	297					cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						CATGAATCCAGATAACTACTT	0.458													4	33					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	11	30926522	30926522	+	RNA	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:30926522C>T	uc001mss.1	-	9		c.1397G>A			uc009yjk.1_Missense_Mutation_p.G880R|uc009yjj.1_RNA					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		GGGAATGTTCCAGCCACAATT	0.428													13	36					0	0	0.001855	0	0
NAT10	55226	broad.mit.edu	37	11	34156825	34156825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:34156825C>T	uc001mvk.2	+	19	2259	c.2015C>T	c.(2014-2016)ACC>ATC	p.T672I	NAT10_uc010ren.1_Missense_Mutation_p.T600I	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	672	N-acetyltransferase.					nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				GAAATTCACACCGTAAGCAGC	0.507													8	52					0	0	0.003080	0	0
RAG2	5897	broad.mit.edu	37	11	36614379	36614379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:36614379G>A	uc001mwv.3	-	2	1528	c.1340C>T	c.(1339-1341)TCT>TTT	p.S447F	RAG1_uc001mwt.2_Intron|C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	447	PHD-type; atypical.				chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				ATCCCCATGAGAGCAGTAGAT	0.493									Familial_Hemophagocytic_Lymphohistiocytosis				7	30					0	0	0.004482	0	0
OR4C12	283093	broad.mit.edu	37	11	50004008	50004008	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:50004008G>A	uc010ria.1	-	1	30	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						CTATTAAAATGAATTCAGTCA	0.343													6	25					0	0	0.001984	0	0
OR8H2	390151	broad.mit.edu	37	11	55872953	55872953	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:55872953C>T	uc010riy.1	+	1	435	c.435C>T	c.(433-435)ATC>ATT	p.I145I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TCGCTCTCATCACTGGGCCTT	0.448										HNSCC(53;0.14)			8	81					0	0	0.003080	0	0
OR5A1	219982	broad.mit.edu	37	11	59211055	59211055	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:59211055C>T	uc001nnx.1	+	1	414	c.414C>T	c.(412-414)ATC>ATT	p.I138I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						ACCCCACTATCATGACCCAGG	0.542													14	127					0	0	0.003163	0	0
MAP4K2	5871	broad.mit.edu	37	11	64567806	64567806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:64567806G>A	uc001obh.2	-	11	876	c.784C>T	c.(784-786)CCG>TCG	p.P262S	MAP4K2_uc001obi.2_Missense_Mutation_p.P262S	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	262	Protein kinase.				activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						TCTGCTGTCGGCCTCTTCTTA	0.602													7	51					0	0	0.004482	0	0
SART1	9092	broad.mit.edu	37	11	65733863	65733863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:65733863G>A	uc001ogl.2	+	9	1116	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	SART1_uc010rot.1_Silent_p.L227L	NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	342					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						CGAAGAGCTTGAAGGGGAGCG	0.622													4	22					0	0	0.000602	0	0
BRMS1	25855	broad.mit.edu	37	11	66109080	66109081	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:66109080_66109081CC>TT	uc001ohp.1	-	3	300_301	c.153_154GG>AA	c.(151-156)GAGGAC>GAAAAC	p.D52N	BRMS1_uc001oho.1_Missense_Mutation_p.D52N|BRMS1_uc009yre.2_5'Flank	NM_015399	NP_056214	Q9HCU9	BRMS1_HUMAN	breast cancer metastasis suppressor 1 isoform 1	52					apoptosis|negative regulation of anti-apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of anoikis|positive regulation of protein deacetylation|transcription, DNA-dependent	cytoplasm|nucleus	NF-kappaB binding				0						CGCTCATAGTCCTCATCATCCA	0.49													9	79					0	0	0.004672	0	0
CLPB	81570	broad.mit.edu	37	11	72040825	72040825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:72040825C>T	uc001osj.2	-	7	939	c.889G>A	c.(889-891)GAA>AAA	p.E297K	CLPB_uc010rqx.1_Missense_Mutation_p.E252K|CLPB_uc010rqy.1_Missense_Mutation_p.E238K|CLPB_uc001osk.2_Missense_Mutation_p.E267K|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Missense_Mutation_p.E96K	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	297					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TGTCCCATTTCATTCCTCTGC	0.532													19	172					0	0	0.000958	0	0
GDPD5	81544	broad.mit.edu	37	11	75146615	75146615	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:75146615G>A	uc001owo.3	-	18	2292	c.1755C>T	c.(1753-1755)ACC>ACT	p.T585T	GDPD5_uc001owp.3_Silent_p.T585T|GDPD5_uc001own.3_Silent_p.T340T|GDPD5_uc009yuc.2_Silent_p.T447T|GDPD5_uc009yud.2_Silent_p.T466T	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	585	Cytoplasmic (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						GGCCCACAGGGGTGGCGGTGC	0.582													5	30					0	0	0.000602	0	0
CCDC90B	60492	broad.mit.edu	37	11	82991187	82991187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:82991187G>A	uc001pae.2	-	2	579	c.217C>T	c.(217-219)CAT>TAT	p.H73Y	CCDC90B_uc001pac.2_5'UTR|CCDC90B_uc001pad.2_5'UTR|CCDC90B_uc001paf.2_Missense_Mutation_p.H64Y	NM_021825	NP_068597	Q9GZT6	CC90B_HUMAN	coiled-coil domain containing 90B precursor	73						integral to membrane|mitochondrion|mitochondrion					0		Acute lymphoblastic leukemia(157;0.103)				TTCTCACCATGAGTTTCCAAG	0.363													8	41					0	0	0.000978	0	0
CCDC83	220047	broad.mit.edu	37	11	85627214	85627214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:85627214G>A	uc001pbh.1	+	10	1530	c.1018G>A	c.(1018-1020)GGC>AGC	p.G340S	CCDC83_uc001pbg.1_Missense_Mutation_p.G371S|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.G240S	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	340										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				GGAAAACTCAGGCACAGAGTT	0.368													19	95					0	0	0.006122	0	0
CCDC83	220047	broad.mit.edu	37	11	85627226	85627226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:85627226G>A	uc001pbh.1	+	10	1542	c.1030G>A	c.(1030-1032)GGG>AGG	p.G344R	CCDC83_uc001pbg.1_Missense_Mutation_p.G375R|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.G244R	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	344										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CACAGAGTTTGGGGACACTGA	0.358													13	106					0	0	0.001855	0	0
CCDC67	159989	broad.mit.edu	37	11	93097393	93097393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:93097393G>A	uc001pdq.2	+	5	465	c.365G>A	c.(364-366)CGA>CAA	p.R122Q	CCDC67_uc001pdo.1_Missense_Mutation_p.R122Q|CCDC67_uc001pdp.2_Missense_Mutation_p.R122Q	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	122	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AAAGTTCCACGAAAAGAATTA	0.294													6	36					0	0	0.001168	0	0
OR10S1	219873	broad.mit.edu	37	11	123847810	123847811	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr11:123847810_123847811GG>AA	uc001pzm.1	-	1	588_589	c.588_589CC>TT	c.(586-591)CCCCCT>CCTTCT	p.P197S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTTAGGACAGGGGGTATGTCGC	0.564													4	26					0	0	0.004672	0	0
NCAPD2	9918	broad.mit.edu	37	12	6624077	6624077	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:6624077G>A	uc001qoo.2	+	9	1024	c.978G>A	c.(976-978)CTG>CTA	p.L326L	NCAPD2_uc009zen.1_Silent_p.L198L|NCAPD2_uc010sfd.1_Silent_p.L281L	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	326	Interactions with SMC2 and SMC4.				cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						TAGATCACCTGGATGGAGAAG	0.473													11	44					0	0	0.000978	0	0
GNB3	2784	broad.mit.edu	37	12	6953123	6953123	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:6953123C>G	uc001qrd.2	+	9	1085	c.680C>G	c.(679-681)TCG>TGG	p.S227W	GNB3_uc001qrc.2_Missense_Mutation_p.S183W|GNB3_uc009zfe.2_Missense_Mutation_p.S226W	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	227	WD 5.				cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						GGCCACGAGTCGGACATCAAC	0.577													5	24					0	0	0.000602	0	0
CD163	9332	broad.mit.edu	37	12	7649678	7649678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:7649678C>T	uc001qsz.3	-	5	958	c.830G>A	c.(829-831)GGA>GAA	p.G277E	CD163_uc001qta.3_Missense_Mutation_p.G277E|CD163_uc009zfw.2_Missense_Mutation_p.G277E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	277	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTCTAATCTTCCTGAACATTC	0.488													9	62					0	0	0.000673	0	0
Unknown	0	broad.mit.edu	37	12	8051451	8051451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:8051451G>A	uc001qtp.1	+	4	731	c.651G>A	c.(649-651)ATG>ATA	p.M217I	uc001qtq.1_5'Flank					RecName: Full=Putative homeobox protein NANOG2;																		CACAAACCATGGATTTATTCC	0.443													20	127					0	0	0.001523	0	0
CLEC4D	338339	broad.mit.edu	37	12	8673736	8673736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:8673736G>A	uc001qun.2	+	6	710	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	173	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					GCATAAGAATGAACCCGACAA	0.333													6	52					0	0	0.001984	0	0
PRH1	5554	broad.mit.edu	37	12	11035670	11035670	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:11035670G>A	uc001qzc.2	-	6	678	c.90C>T	c.(88-90)CTC>CTT	p.L30L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_RNA|PRB4_uc001qzf.1_Intron	NM_006250	NP_006241	P02810	PRPC_HUMAN	proline-rich protein HaeIII subfamily 1	30	Inhibits hydroxyapatite formation, binds to hydroxyapatite and calcium.					extracellular space	protein binding				0				BRCA - Breast invasive adenocarcinoma(232;0.245)		CTGATATTACGAGGGGAACAT	0.383													7	29					0	0	0.003080	0	0
RERG	85004	broad.mit.edu	37	12	15262345	15262345	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:15262345T>C	uc001rcs.2	-	4	439	c.299A>G	c.(298-300)AAC>AGC	p.N100S	RERG_uc001rct.2_Missense_Mutation_p.N100S|RERG_uc010shu.1_Missense_Mutation_p.N81S	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	100					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						ATCTAGGATGTTCTTAAGTGG	0.493													31	157					0	0	0.002096	0	0
H3F3C	440093	broad.mit.edu	37	12	31944931	31944931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:31944931G>A	uc001rkr.2	-	1	245	c.170C>T	c.(169-171)TCG>TTG	p.S57L		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	57					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CAGCTCGGTCGACTTCTGATA	0.592										HNSCC(67;0.2)			7	37					0	0	0.003080	0	0
CACNB3	784	broad.mit.edu	37	12	49219238	49219239	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:49219238_49219239GC>AA	uc001rsl.1	+	8	796_797	c.595_596GC>AA	c.(595-597)GCT>AAT	p.A199N	CACNB3_uc010sly.1_Missense_Mutation_p.A186N|CACNB3_uc010slz.1_Missense_Mutation_p.A198N|CACNB3_uc001rsk.1_Missense_Mutation_p.A46N	NM_000725	NP_000716	P54284	CACB3_HUMAN	calcium channel, voltage-dependent, beta 3	199					axon guidance|membrane depolarization|synaptic transmission	cytosol|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0					Verapamil(DB00661)	GATGCAGAAGGCTCTCTTCGAC	0.564													10	42					0	0	0.004672	0	0
FAM186B	84070	broad.mit.edu	37	12	49982310	49982310	+	Missense_Mutation	SNP	G	A	A	rs149783745	by1000genomes	TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:49982310G>A	uc001ruo.2	-	6	2634	c.2461C>T	c.(2461-2463)CGC>TGC	p.R821C	FAM186B_uc010smk.1_Missense_Mutation_p.R731C	NM_032130	NP_115506	Q8IYM0	F186B_HUMAN	hypothetical protein LOC84070	821						protein complex				ovary(1)	1						CCACTGGGGCGGATGTGCCGG	0.617													11	69					0	0	0.000978	0	0
BIN2	51411	broad.mit.edu	37	12	51685460	51685460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:51685460C>T	uc001ryg.2	-	10	1482	c.1430G>A	c.(1429-1431)AGA>AAA	p.R477K	BIN2_uc009zlz.2_Missense_Mutation_p.R445K|BIN2_uc001ryh.2_Missense_Mutation_p.R353K|BIN2_uc010sng.1_Missense_Mutation_p.R451K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	477	Pro-rich.					cytoplasm	protein binding			ovary(1)	1						CTCAGGAGTTCTTACTGGCTT	0.502													3	29					0	0	0.004672	0	0
KRT75	9119	broad.mit.edu	37	12	52827645	52827645	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:52827645C>T	uc001saj.2	-	1	466	c.444G>A	c.(442-444)GAG>GAA	p.E148E		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	148	Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GCTCGCGCTCCTCGGCCCGCA	0.562													13	45					0	0	0.002450	0	0
LRIG3	121227	broad.mit.edu	37	12	59307766	59307766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:59307766G>A	uc001sqr.2	-	3	626	c.380C>T	c.(379-381)TCC>TTC	p.S127F	LRIG3_uc009zqh.2_Missense_Mutation_p.S67F|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	127	LRR 3.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			CACTTACAAGGAGAGAAGTGT	0.378													7	46					0	0	0.004482	0	0
TMCC3	57458	broad.mit.edu	37	12	94965246	94965246	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:94965246G>A	uc001tdj.2	-	4	1517	c.1399C>T	c.(1399-1401)CTG>TTG	p.L467L	TMCC3_uc001tdi.2_Silent_p.L436L	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	467	Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2						ATGGCACACAGGATATGGTCC	0.408													6	31					0	0	0.001168	0	0
DNAH10	196385	broad.mit.edu	37	12	124341693	124341693	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:124341693C>T	uc001uft.3	+	36	6200	c.6175C>T	c.(6175-6177)CTG>TTG	p.L2059L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2059					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GATTTCGGATCTGTTTCCTGG	0.542													7	37					0	0	0.001984	0	0
RIMBP2	23504	broad.mit.edu	37	12	130919306	130919306	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:130919306G>A	uc001uil.2	-	11	2339	c.2175C>T	c.(2173-2175)TTC>TTT	p.F725F	RIMBP2_uc001uim.2_Silent_p.F633F|RIMBP2_uc001uin.1_Silent_p.F384F	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	725						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		AGCCTTTCAGGAAGTCGTCCA	0.657													11	80					0	0	0.000978	0	0
EP400	57634	broad.mit.edu	37	12	132522579	132522579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr12:132522579C>T	uc001ujn.2	+	31	6180	c.6145C>T	c.(6145-6147)CTT>TTT	p.L2049F	EP400_uc001ujl.2_Missense_Mutation_p.L2048F|EP400_uc001ujm.2_Missense_Mutation_p.L1968F	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2085					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GTTTGTGGTGCTTTCTCAGGA	0.468													12	72					0	0	0.002450	0	0
TSC22D1	8848	broad.mit.edu	37	13	45008793	45008793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr13:45008793G>A	uc001uzn.3	-	3	3682	c.3191C>T	c.(3190-3192)CCA>CTA	p.P1064L	TSC22D1_uc001uzo.1_Intron|TSC22D1_uc001uzm.3_Missense_Mutation_p.P135L	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	1064					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		CTGCGATGCTGGCTGGGCGGG	0.652													4	24					0	0	0.000602	0	0
TSSK4	283629	broad.mit.edu	37	14	24675720	24675720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:24675720G>A	uc001wng.2	+	2	399	c.231G>A	c.(229-231)ATG>ATA	p.M77I	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Missense_Mutation_p.M1I|TSSK4_uc001wnf.2_5'UTR|TSSK4_uc001wnh.2_Missense_Mutation_p.M77I	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	77	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		GTCAGGTAATGAAAGTCTTGC	0.517													6	32					0	0	0.001984	0	0
SSTR1	6751	broad.mit.edu	37	14	38679446	38679446	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:38679446G>A	uc001wul.1	+	3	1469	c.852G>A	c.(850-852)TGG>TGA	p.W284*	SSTR1_uc010amu.1_Intron	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	284	Helical; Name=6; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	TCATCTGCTGGATGCCTTTCT	0.592													4	26					0	0	0.000602	0	0
KIAA0831	22863	broad.mit.edu	37	14	55836569	55836569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:55836569G>A	uc001xbx.1	-	10	1283	c.1247C>T	c.(1246-1248)TCA>TTA	p.S416L	FBXO34_uc001xbv.2_Intron|KIAA0831_uc001xbw.1_Missense_Mutation_p.S303L	NM_014924	NP_055739	Q6ZNE5	BAKOR_HUMAN	Barkor	416					autophagic vacuole assembly|positive regulation of autophagy	autophagic vacuole|endoplasmic reticulum|pre-autophagosomal structure membrane	protein binding				0						GCTCTCATCTGATTCTCCAGC	0.542													9	41					0	0	0.000978	0	0
SYT16	83851	broad.mit.edu	37	14	62462927	62462927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:62462927G>A	uc001xfu.1	+	1	387	c.190G>A	c.(190-192)GAA>AAA	p.E64K	SYT16_uc010tsd.1_Missense_Mutation_p.E64K	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	64										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		TCAGATTCAGGAAACGTACTT	0.358													9	87					0	0	0.004482	0	0
ADAM21	8747	broad.mit.edu	37	14	70925048	70925048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:70925048G>A	uc001xmd.2	+	1	832	c.832G>A	c.(832-834)GAT>AAT	p.D278N		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	278	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GGTCCTGAACGATTTCTCTCA	0.353													6	39					0	0	0.001168	0	0
PNMA1	9240	broad.mit.edu	37	14	74179807	74179807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:74179807G>A	uc001xor.1	-	1	1322	c.536C>T	c.(535-537)CCC>CTC	p.P179L		NM_006029	NP_006020	Q8ND90	PNMA1_HUMAN	paraneoplastic antigen MA1	179					apoptosis|central nervous system development|inflammatory response to antigenic stimulus|spermatogenesis	cytoplasm|focal adhesion|nucleolus	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00331)|KIRC - Kidney renal clear cell carcinoma(182;0.0797)		ctccagccagggatcaaaggt	0													4	34					0	0	0.000248	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103404735	103404735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:103404735G>A	uc001ymi.1	-	35	5073	c.4841C>T	c.(4840-4842)CCC>CTC	p.P1614L		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1614					actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CTCCTGGGAGGGGGGCACAGC	0.637													8	28					0	0	0.000443	0	0
C14orf153	84334	broad.mit.edu	37	14	104056554	104056554	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:104056554C>T	uc010tyc.1	+	5	553	c.552C>T	c.(550-552)TTC>TTT	p.F184F	KLC1_uc010tyd.1_Intron|C14orf153_uc001ynl.3_RNA	NM_032374	NP_115750	Q96IL0	CN153_HUMAN	chromosome 14 open reading frame 153	171											0		Melanoma(154;0.226)				TCACCTTCTTCATGGGAAAAG	0.512													8	116					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106622069	106622069	+	RNA	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:106622069G>A	uc010tyt.1	-	1113		c.25577C>T								Parts of antibodies, mostly variable regions.												0						CTTTCCTGGAGCCTTGCGGGC	0.577													18	108					0	0	0.001523	0	0
ADAM6	8755	broad.mit.edu	37	14	106967191	106967191	+	RNA	SNP	A	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr14:106967191A>T	uc010tyt.1	-	201		c.9250T>A								Parts of antibodies, mostly variable regions.												0						ACTAGGGTTGATTATTCCCAT	0.547													12	45					0	0	0.001368	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22840322	22840323	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:22840322_22840323CC>TT	uc001yur.3	+	4	518_519	c.388_389CC>TT	c.(388-390)CCA>TTA	p.P130L	TUBGCP5_uc001yuq.2_Missense_Mutation_p.P130L	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	130					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TGTGGAGACACCAAGAAATAAA	0.332													5	48					0	0	0.004672	0	0
CYFIP1	23191	broad.mit.edu	37	15	22933600	22933600	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:22933600C>T	uc001yus.2	+	7	713	c.609C>T	c.(607-609)TCC>TCT	p.S203S	CYFIP1_uc001yut.2_Silent_p.S203S|CYFIP1_uc010aya.1_Silent_p.S231S	NM_014608	NP_055423	Q7L576	CYFP1_HUMAN	cytoplasmic FMR1 interacting protein 1 isoform	203					axon extension|lamellipodium assembly|regulation of cell shape|ruffle organization	cell junction|lamellipodium|mRNA cap binding complex|perinuclear region of cytoplasm|ruffle|synapse|synaptosome	actin filament binding|Rac GTPase binding			ovary(4)|pancreas(3)|liver(1)|skin(1)	9		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.22e-06)|Epithelial(43;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00101)		ATCCACAGTCCATCCAGGAAT	0.438													5	28					0	0	0.001168	0	0
CEP152	22995	broad.mit.edu	37	15	49054838	49054838	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:49054838T>C	uc001zwy.2	-	18	2346	c.2312A>G	c.(2311-2313)AAG>AGG	p.K771R	CEP152_uc001zwz.2_Missense_Mutation_p.K771R|CEP152_uc001zxa.1_Missense_Mutation_p.K678R	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	771	Potential.				centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		CTGCCACTCCTTTTCAAGCTG	0.338													6	55					0	0	0.001984	0	0
C2CD4A	145741	broad.mit.edu	37	15	62359840	62359841	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:62359840_62359841GG>AA	uc002ahf.3	+	2	169_170	c.28_29GG>AA	c.(28-30)GGT>AAT	p.G10N		NM_207322	NP_997205	Q8NCU7	C2C4A_HUMAN	nuclear localized factor 1	10						nucleus					0						ACTCCGCTTGGGTCCTGAGTGC	0.653													4	10					0	0	0.004672	0	0
CILP	8483	broad.mit.edu	37	15	65490910	65490910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:65490910G>A	uc002aon.2	-	9	1895	c.1714C>T	c.(1714-1716)CGT>TGT	p.R572C		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	572					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						TTTTTCCGACGAAGCATCTTG	0.507													7	32					0	0	0.003080	0	0
GLCE	26035	broad.mit.edu	37	15	69548413	69548414	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:69548413_69548414GG>TA	uc002ary.1	+	3	496_497	c.268_269GG>TA	c.(268-270)GGC>TAC	p.G90Y		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	90	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TGTTGTTGGGGGCTTCAATAGC	0.455													7	42					0	0	0.004672	0	0
GRAMD2	196996	broad.mit.edu	37	15	72455626	72455626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:72455626G>A	uc002atq.2	-	10	961	c.937C>T	c.(937-939)CTC>TTC	p.L313F	GRAMD2_uc010bis.2_Missense_Mutation_p.L313F|GRAMD2_uc010ukh.1_Missense_Mutation_p.L107F	NM_001012642	NP_001012660	Q8IUY3	GRAM2_HUMAN	GRAM domain containing 2	313	Helical; (Potential).					integral to membrane					0						AAGACCTTGAGGAGCCGGTAA	0.562													8	33					0	0	0.004482	0	0
CLK3	1198	broad.mit.edu	37	15	74922068	74922068	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:74922068C>T	uc010uln.1	+	13	2222	c.1761C>T	c.(1759-1761)TCC>TCT	p.S587S	CLK3_uc002ayg.3_Silent_p.S439S|CLK3_uc002ayh.3_Silent_p.S218S|CLK3_uc002ayj.3_Silent_p.S416S|CLK3_uc002ayk.3_Silent_p.S366S|CLK3_uc002ayl.3_Silent_p.S272S	NM_001130028	NP_001123500	P49761	CLK3_HUMAN	CDC-like kinase 3 isoform a	587	Protein kinase.					acrosomal vesicle|nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)	2						TCCAAGACTCCCTGGAGCACG	0.602													5	8					0	0	0.003080	0	0
TMC3	342125	broad.mit.edu	37	15	81660664	81660664	+	Missense_Mutation	SNP	G	A	A	rs140022845	by1000genomes	TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:81660664G>A	uc002bgo.1	-	3	242	c.242C>T	c.(241-243)GCG>GTG	p.A81V	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.A81V	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	81	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						AATGTTCTTCGCTTGTCTAAG	0.403													9	94					0	0	0.004482	0	0
MAN2A2	4122	broad.mit.edu	37	15	91448664	91448665	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr15:91448664_91448665CC>TT	uc010bnz.2	+	3	431_432	c.316_317CC>TT	c.(316-318)CCC>TTC	p.P106F	MAN2A2_uc010boa.2_Missense_Mutation_p.P148F|MAN2A2_uc002bqc.2_Missense_Mutation_p.P106F|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	106	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			GGAGCCCCGGCCCAGCTTCTTC	0.658													12	133					0	0	0.004672	0	0
MRPL28	10573	broad.mit.edu	37	16	418402	418402	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:418402G>C	uc002cgr.1	-	4	605	c.589C>G	c.(589-591)CCA>GCA	p.P197A	MRPL28_uc010bqu.1_Intron|MRPL28_uc002cgs.1_Missense_Mutation_p.P197A|MRPL28_uc002cgt.1_Missense_Mutation_p.P197A	NM_006428	NP_006419	Q13084	RM28_HUMAN	mitochondrial ribosomal protein L28 precursor	197					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0		Hepatocellular(16;0.000105)|Lung NSC(18;0.0324)|all_lung(18;0.064)				TCCTCCTCTGGGATGGCAAAT	0.622													11	43					0	0	0.001368	0	0
BFAR	51283	broad.mit.edu	37	16	14761504	14761504	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:14761504G>A	uc002dco.2	+	8	1454	c.1173G>A	c.(1171-1173)CAG>CAA	p.Q391Q	BFAR_uc002dcp.2_Silent_p.Q266Q|BFAR_uc010uzh.1_Silent_p.Q263Q	NM_016561	NP_057645	Q9NZS9	BFAR_HUMAN	bifunctional apoptosis regulator	391	Lumenal (Potential).				anti-apoptosis|apoptosis	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	structural molecule activity|zinc ion binding			ovary(1)|skin(1)	2						CCGTGCCTCAGAGGATGTGGA	0.537													11	75					0	0	0.001855	0	0
ABCC6P2	730013	broad.mit.edu	37	16	14916840	14916840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:14916840G>A	uc002dcu.2	-	2	155	c.122C>T	c.(121-123)CCC>CTC	p.P41L		NR_023387				SubName: Full=ATP-binding cassette, sub-family C (CFTR/MRP), member 6; SubName: Full=Up-regulated gene 7;												0						GAGGTACATGGGGGGCACCCA	0.592													11	45					0	0	0.000673	0	0
ABCC6	368	broad.mit.edu	37	16	16282690	16282690	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:16282690G>A	uc002den.3	-	13	1814	c.1777C>T	c.(1777-1779)CAG>TAG	p.Q593*	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Nonsense_Mutation_p.Q605*	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	593	ABC transmembrane type-1 1.|Helical; Name=11; (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CACCTCACCTGGACGAGGGAG	0.572													4	13					0	0	0.000602	0	0
VWA3A	146177	broad.mit.edu	37	16	22132294	22132294	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:22132294C>T	uc010vbq.1	+	13	1218	c.1122C>T	c.(1120-1122)TCC>TCT	p.S374S	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Silent_p.S361S	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	374						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		CTTAGATTTCCACAGAGATTA	0.438													8	15					0	0	0.004482	0	0
CD19	930	broad.mit.edu	37	16	28944626	28944626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:28944626C>T	uc002drs.2	+	4	693	c.631C>T	c.(631-633)CCC>TCC	p.P211S	uc010vct.1_Intron|CD19_uc010byo.1_Missense_Mutation_p.P211S	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	211	Extracellular (Potential).|Ig-like C2-type 2.				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						GTCCAGGGGCCCCCTCTCCTG	0.602													5	12					0	0	0.001168	0	0
MAPK3	5595	broad.mit.edu	37	16	30128278	30128278	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:30128278C>T	uc002dws.2	-	7	1054	c.954G>A	c.(952-954)CGG>CGA	p.R318R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAPK3_uc002dwr.2_Silent_p.R204R|MAPK3_uc002dwv.3_Silent_p.R274R|MAPK3_uc002dwt.2_Silent_p.R318R|MAPK3_uc002dwu.2_RNA|MAPK3_uc010bzp.2_RNA	NM_002746	NP_002737	P27361	MK03_HUMAN	mitogen-activated protein kinase 3 isoform 1	318	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|cellular response to mechanical stimulus|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|interleukin-1-mediated signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription initiation from RNA polymerase I promoter	cytosol|nucleoplasm	ATP binding|MAP kinase activity|phosphatase binding				0					Arsenic trioxide(DB01169)|Isoproterenol(DB01064)|Simvastatin(DB00641)|Sulindac(DB00605)	CCACTGTGATCCGTTTATTGG	0.602													17	90					0	0	0.001523	0	0
TRIM72	493829	broad.mit.edu	37	16	31235672	31235672	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:31235672G>C	uc002ebn.1	+	7	1259	c.1030G>C	c.(1030-1032)GAG>CAG	p.E344Q	uc002ebp.1_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	344	B30.2/SPRY.				exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						CTCCGAGGGCGAGCACTACTG	0.617													2	4					0	0	0.004672	0	0
ELMO3	79767	broad.mit.edu	37	16	67236598	67236598	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr16:67236598C>T	uc002esa.2	+	15	1669	c.1626C>T	c.(1624-1626)TTC>TTT	p.F542F	ELMO3_uc002esb.2_Silent_p.F525F|ELMO3_uc002esc.2_Silent_p.F376F|uc010vjf.1_5'Flank|MIR328_hsa-mir-328|MI0000804_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	489					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		TGGAGCTCTTCCGAACCAAGG	0.647													5	28					0	0	0.001984	0	0
GLOD4	51031	broad.mit.edu	37	17	673150	673150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:673150G>A	uc002frv.2	-	9	911	c.835C>T	c.(835-837)CTT>TTT	p.L279F	GLOD4_uc002frt.2_Missense_Mutation_p.L208F|GLOD4_uc002fru.2_Missense_Mutation_p.L264F|GLOD4_uc010vqc.1_Missense_Mutation_p.L255F	NM_016080	NP_057164	Q9HC38	GLOD4_HUMAN	glyoxalase domain containing 4	279						mitochondrion					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		ATCTTAGAAAGTTCTCGAAAT	0.443													5	25					0	0	0.001984	0	0
RPA1	6117	broad.mit.edu	37	17	1787173	1787173	+	Missense_Mutation	SNP	G	A	A	rs142406311	byFrequency	TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:1787173G>A	uc002fto.2	+	13	1424	c.1309G>A	c.(1309-1311)GGG>AGG	p.G437R		NM_002945	NP_002936	P27694	RFA1_HUMAN	replication protein A1	437					cell cycle checkpoint|DNA recombinase assembly|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	actin cytoskeleton|cytoplasm|DNA replication factor A complex|PML body	metal ion binding|protein binding|single-stranded DNA binding				0						CGGAGTCGGAGGGAGTAACAC	0.507								NER					9	68					0	0	0.004482	0	0
LOC284009	284009	broad.mit.edu	37	17	2310519	2310519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:2310519G>A	uc002fus.2	-	3	332	c.253C>T	c.(253-255)CCT>TCT	p.P85S		NM_001025459	NP_001020630			SubName: Full=Putative uncharacterized protein LOC284009;												0						ACGATGTCAGGGATTCCTTTA	0.527													3	9					0	0	0.000248	0	0
DHX33	56919	broad.mit.edu	37	17	5356903	5356903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:5356903G>A	uc002gca.2	-	8	1395	c.1393C>T	c.(1393-1395)CCA>TCA	p.P465S	DHX33_uc002gbz.2_Missense_Mutation_p.P236S|DHX33_uc002gcb.2_Missense_Mutation_p.P292S|DHX33_uc010clf.2_Missense_Mutation_p.P241S	NM_020162	NP_064547	Q9H6R0	DHX33_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 33	465						nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|pancreas(1)	2						CACTTACCTGGAGATGGCTTC	0.428													8	67					0	0	0.004482	0	0
MYH2	4620	broad.mit.edu	37	17	10429120	10429120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:10429120C>T	uc010coi.2	-	31	4389	c.4261G>A	c.(4261-4263)GAA>AAA	p.E1421K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1421K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1421	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCGTCTTTTCGAGGGAAGCA	0.512													6	50					0	0	0.003080	0	0
MYH2	4620	broad.mit.edu	37	17	10432922	10432922	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:10432922G>A	uc010coi.2	-	24	3204	c.3076C>T	c.(3076-3078)CTG>TTG	p.L1026L	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.L1026L|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1026	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCTTTGGTCAGGGTGTTGACT	0.458													12	98					0	0	0.001855	0	0
FAM83G	644815	broad.mit.edu	37	17	18881398	18881398	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:18881398C>T	uc002guw.2	-	5	1748	c.1581G>A	c.(1579-1581)CTG>CTA	p.L527L	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	527										ovary(1)|central_nervous_system(1)	2						TGGGGAGCTCCAGGACCCAGC	0.647													10	51					0	0	0.001368	0	0
ALDOC	230	broad.mit.edu	37	17	26900872	26900872	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:26900872G>A	uc002hbp.2	-	8	1025	c.880C>T	c.(880-882)CGA>TGA	p.R294*	PIGS_uc002hbn.2_5'Flank|PIGS_uc002hbo.2_5'Flank|PIGS_uc010wap.1_5'Flank|ALDOC_uc010cro.2_Nonsense_Mutation_p.R266*	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	294					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					GCCCAGGGTCGGGGAAGGGGG	0.602													10	62					0	0	0.001368	0	0
ZNF830	91603	broad.mit.edu	37	17	33289448	33289449	+	Missense_Mutation	DNP	CC	TT	TT	rs143227754	byFrequency	TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:33289448_33289449CC>TT	uc002hih.3	+	1	900_901	c.863_864CC>TT	c.(862-864)TCC>TTT	p.S288F	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	288					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				AACACTATTTCCGAAGCCATAG	0.5													6	48					0	0	0.004672	0	0
SRCIN1	80725	broad.mit.edu	37	17	36704930	36704930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:36704930C>T	uc002hqd.2	-	17	3358	c.3133G>A	c.(3133-3135)GAG>AAG	p.E1045K	SRCIN1_uc002hqf.1_Missense_Mutation_p.E917K|SRCIN1_uc002hqe.2_Missense_Mutation_p.E899K	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	917					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						ACCTCCAGCTCCTCGGACTCA	0.667													5	10					0	0	0.001168	0	0
CWC25	54883	broad.mit.edu	37	17	36971165	36971165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:36971165G>A	uc002hqu.2	-	3	530	c.377C>T	c.(376-378)TCC>TTC	p.S126F	CWC25_uc010wdv.1_Missense_Mutation_p.S63F|CWC25_uc010wdw.1_RNA|CWC25_uc010wdx.1_RNA	NM_017748	NP_060218	Q9NXE8	CWC25_HUMAN	coiled-coil domain containing 49	126											0						GTCAAGAAGGGAATTGGCACC	0.507													8	25					0	0	0.004482	0	0
IKZF3	22806	broad.mit.edu	37	17	37922309	37922309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:37922309G>A	uc002hsu.2	-	8	1326	c.1264C>T	c.(1264-1266)CCC>TCC	p.P422S	IKZF3_uc002htd.2_Missense_Mutation_p.P388S|IKZF3_uc010cwd.2_Missense_Mutation_p.P279S|IKZF3_uc002hsv.2_Missense_Mutation_p.P349S|IKZF3_uc010cwe.2_Missense_Mutation_p.P288S|IKZF3_uc010cwf.2_Missense_Mutation_p.P240S|IKZF3_uc010cwg.2_Missense_Mutation_p.P201S|IKZF3_uc002hsw.2_Missense_Mutation_p.P383S|IKZF3_uc002hsx.2_Missense_Mutation_p.P366S|IKZF3_uc002hsy.2_Missense_Mutation_p.P383S|IKZF3_uc002hsz.2_Missense_Mutation_p.P327S|IKZF3_uc002hta.2_Missense_Mutation_p.P344S|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.P335S|IKZF3_uc002htc.2_Missense_Mutation_p.P175S|IKZF3_uc010wel.1_Missense_Mutation_p.P175S	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	422					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TAAGAGCGGGGAACCTCCTTC	0.537													16	62					0	0	0.004007	0	0
CASC3	22794	broad.mit.edu	37	17	38325652	38325653	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:38325652_38325653CC>TT	uc010cwt.1	+	12	2336_2337	c.2041_2042CC>TT	c.(2041-2043)CCC>TTC	p.P681F	CASC3_uc002hue.2_Missense_Mutation_p.P681F	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	681	Necessary for localization in cytoplasmic stress granules.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						GCCCTCCCCACCCCGGAGGACT	0.589													9	39					0	0	0.004672	0	0
TNS4	84951	broad.mit.edu	37	17	38638427	38638427	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:38638427G>A	uc010cxb.2	-	8	1790	c.1626C>T	c.(1624-1626)TCC>TCT	p.S542S	TNS4_uc002huu.3_5'Flank	NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	542	SH2.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GGGCCATGATGGAATGCTGGC	0.597													10	25					0	0	0.001855	0	0
KRT20	54474	broad.mit.edu	37	17	39041341	39041341	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:39041341G>T	uc002hvl.2	-	1	139	c.97C>A	c.(97-99)CCC>ACC	p.P33T		NM_019010	NP_061883	P35900	K1C20_HUMAN	keratin 20	33	Head.				apoptosis|intermediate filament organization	Golgi apparatus|intermediate filament	protein binding|structural constituent of cytoskeleton			large_intestine(1)|kidney(1)|skin(1)	3		Breast(137;0.000301)|Ovarian(249;0.15)				TAAACGCTGGGTGTCGTCCCG	0.607													6	25					1.06961e-07	4.80181e-07	0.003080	1	0
WNT9B	7484	broad.mit.edu	37	17	44953742	44953742	+	Silent	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:44953742G>C	uc002ikw.1	+	4	769	c.732G>C	c.(730-732)TCG>TCC	p.S244S	WNT9B_uc002ikx.1_Silent_p.S244S	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	244					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			GCTATGACTCGGCTGTCAAGG	0.652													3	42					0	0	0.000248	0	0
GIP	2695	broad.mit.edu	37	17	47044539	47044539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:47044539C>T	uc002iol.1	-	2	154	c.56G>A	c.(55-57)GGA>GAA	p.G19E		NM_004123	NP_004114	P09681	GIP_HUMAN	gastric inhibitory polypeptide preproprotein	19					energy reserve metabolic process|signal transduction	extracellular region|soluble fraction	hormone activity			skin(1)	1						CTCTCCTAGTCCCACTGCCAG	0.522													9	58					0	0	0.000978	0	0
FTSJ3	117246	broad.mit.edu	37	17	61901534	61901534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:61901534G>A	uc002jbz.2	-	11	1142	c.1064C>T	c.(1063-1065)CCC>CTC	p.P355L	FTSJ3_uc002jca.2_Missense_Mutation_p.P355L	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	355					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						ctcctTAGAGGGCTGCTTTGT	0.443													19	81					0	0	0.001882	0	0
SDK2	54549	broad.mit.edu	37	17	71354240	71354240	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:71354240G>A	uc010dfm.2	-	40	5571	c.5571C>T	c.(5569-5571)TAC>TAT	p.Y1857Y	SDK2_uc002jjt.3_Silent_p.Y997Y|SDK2_uc010dfn.2_Silent_p.Y1536Y	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1857	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CCTCGATGACGTAGCGGGTGA	0.652													12	131					0	0	0.001855	0	0
GAA	2548	broad.mit.edu	37	17	78084624	78084624	+	Silent	SNP	C	T	T	rs143491365		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:78084624C>T	uc002jxo.2	+	11	1718	c.1536C>T	c.(1534-1536)TTC>TTT	p.F512F	GAA_uc002jxp.2_Silent_p.F512F|GAA_uc002jxq.2_Silent_p.F512F	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	512					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	AGGTGCCCTTCGACGGCATGT	0.632													4	18					0	0	0.000602	0	0
PCYT2	5833	broad.mit.edu	37	17	79867395	79867395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr17:79867395G>A	uc002kcf.1	-	2	236	c.173C>T	c.(172-174)ACC>ATC	p.T58I	PCYT2_uc010wva.1_Missense_Mutation_p.T26I|PCYT2_uc010wvb.1_Missense_Mutation_p.T26I|PCYT2_uc002kce.1_5'UTR|PCYT2_uc002kcg.1_Missense_Mutation_p.T69I|PCYT2_uc002kch.1_Missense_Mutation_p.T58I|PCYT2_uc002kci.1_5'UTR|PCYT2_uc010dii.1_Missense_Mutation_p.T58I|PCYT2_uc010wvc.1_5'UTR	NM_002861	NP_002852	Q99447	PCY2_HUMAN	phosphate cytidylyltransferase 2, ethanolamine	58	Catalytic 1 (Potential).				phospholipid biosynthetic process		ethanolamine-phosphate cytidylyltransferase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.013)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CTTACCATCGGTGTGCACGCC	0.637													10	53					0	0	0.000443	0	0
FAM38B	63895	broad.mit.edu	37	18	10677820	10677820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr18:10677820G>A	uc002kor.3	-	11	1677	c.1537C>T	c.(1537-1539)CCT>TCT	p.P513S	FAM38B_uc002koq.2_Missense_Mutation_p.P348S	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2556						integral to membrane	ion channel activity			ovary(1)	1						TTTTTAAGAGGAAAAGAAAGC	0.323													4	33					0	0	0.000602	0	0
MCART2	147407	broad.mit.edu	37	18	29340392	29340392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr18:29340392C>T	uc002kxa.2	-	1	452	c.233G>A	c.(232-234)CGA>CAA	p.R78Q		NM_001034172	NP_001029344	Q3SY17	MCAR2_HUMAN	mitochondrial carrier triple repeat 2	78	Solcar 1.				transport	integral to membrane|mitochondrial inner membrane				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(10;0.0539)			ATACAAATTTCGAAATCCATC	0.463													7	44					0	0	0.001984	0	0
MRO	83876	broad.mit.edu	37	18	48333145	48333145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr18:48333145C>T	uc002lew.3	-	4	469	c.175G>A	c.(175-177)GAC>AAC	p.D59N	MRO_uc010xdn.1_Missense_Mutation_p.D59N|MRO_uc010dpa.2_Missense_Mutation_p.D73N|MRO_uc010dpb.2_Missense_Mutation_p.D73N|MRO_uc010dpc.2_Missense_Mutation_p.D59N|MRO_uc002lex.3_Missense_Mutation_p.D59N	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	59						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		GCACTGGGGTCCCGAGCTCTT	0.512													25	76					0	0	0.003954	0	0
ATP8B1	5205	broad.mit.edu	37	18	55399013	55399013	+	Silent	SNP	C	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr18:55399013C>A	uc002lgw.2	-	1	27	c.27G>T	c.(25-27)ACG>ACT	p.T9T	uc002lgv.1_RNA	NM_005603	NP_005594	O43520	AT8B1_HUMAN	ATPase, class I, type 8B, member 1	9	Cytoplasmic (Potential).				ATP biosynthetic process|bile acid and bile salt transport|negative regulation of transcription, DNA-dependent	apical plasma membrane|integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(5)|ovary(2)|central_nervous_system(2)|lung(1)	10		Colorectal(73;0.229)				CGTCAAATGTCGTTTCTGAGT	0.433									Byler_disease				18	82					9.57634e-11	4.31229e-10	0.003330	1	0
ARRDC5	645432	broad.mit.edu	37	19	4902816	4902816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:4902816C>T	uc002mbm.2	-	1	64	c.64G>A	c.(64-66)GAA>AAA	p.E22K		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	22					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		AGCACTAATTCGATCGACTTC	0.547													6	34					0	0	0.001168	0	0
LONP1	9361	broad.mit.edu	37	19	5705937	5705937	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:5705937T>C	uc002mcx.2	-	8	1246	c.1213A>G	c.(1213-1215)AAG>GAG	p.K405E	LONP1_uc002mcy.2_Missense_Mutation_p.K341E|LONP1_uc010duh.2_Missense_Mutation_p.K146E|LONP1_uc010dui.2_Missense_Mutation_p.K389E|LONP1_uc002mcz.2_Missense_Mutation_p.K209E	NM_004793	NP_004784	P36776	LONM_HUMAN	mitochondrial lon peptidase 1 precursor	405					cellular chaperone-mediated protein complex assembly|cellular response to oxidative stress|misfolded or incompletely synthesized protein catabolic process|mitochondrial DNA metabolic process|oxidation-dependent protein catabolic process|protein homooligomerization|response to hypoxia	mitochondrial nucleoid	ADP binding|ATP binding|ATP-dependent peptidase activity|DNA polymerase binding|G-quadruplex DNA binding|mitochondrial heavy strand promoter anti-sense binding|mitochondrial light strand promoter anti-sense binding|sequence-specific DNA binding|serine-type endopeptidase activity|single-stranded DNA binding|single-stranded RNA binding				0						CCCAGCTCCTTCTTGATGATC	0.582													3	67					0	0	0.000248	0	0
MYO1F	4542	broad.mit.edu	37	19	8606848	8606848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:8606848C>T	uc002mkg.2	-	15	1666	c.1552G>A	c.(1552-1554)GAG>AAG	p.E518K		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	518	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGGTTCCTCTCGCAGAAGCCG	0.617													5	24					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9047542	9047542	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:9047542C>T	uc002mkp.2	-	5	34293	c.34089G>A	c.(34087-34089)AGG>AGA	p.R11363R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11365	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGGGGTTGTCCTGGGAACTG	0.488													27	132					0	0	0.002096	0	0
MUC16	94025	broad.mit.edu	37	19	9084753	9084753	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:9084753G>A	uc002mkp.2	-	1	7266	c.7062C>T	c.(7060-7062)ATC>ATT	p.I2354I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2354	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCGTCAAGGATATCTGAGG	0.438													6	22					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9090527	9090527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:9090527C>T	uc002mkp.2	-	1	1492	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	430	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAAGTTCCTTCTGTTTCCTTT	0.498													14	46					0	0	0.001855	0	0
ZNF442	79973	broad.mit.edu	37	19	12462032	12462032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:12462032C>T	uc002mtr.1	-	6	978	c.367G>A	c.(367-369)GAA>AAA	p.E123K	ZNF442_uc010xmk.1_Missense_Mutation_p.E54K	NM_030824	NP_110451	Q9H7R0	ZN442_HUMAN	zinc finger protein 442	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(2)|breast(1)|kidney(1)	4						CCCATGATTTCTCCACACACA	0.398													19	60					0	0	0.001216	0	0
MAST1	22983	broad.mit.edu	37	19	12975902	12975902	+	Silent	SNP	C	T	T	rs149802603		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:12975902C>T	uc002mvm.2	+	14	1676	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	516	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TCACAGATTTCGGCCTCTCCA	0.567													6	46					0	0	0.003080	0	0
CYP4F12	66002	broad.mit.edu	37	19	15806987	15806987	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:15806987C>T	uc002nbl.2	+	11	1327	c.1266C>T	c.(1264-1266)ATC>ATT	p.I422I		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CCTGCCTCATCGATATTATAG	0.572													8	33					0	0	0.000443	0	0
CYP4F2	8529	broad.mit.edu	37	19	16000349	16000349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:16000349C>T	uc002nbs.1	-	7	852	c.802G>A	c.(802-804)GAT>AAT	p.D268N	CYP4F2_uc010xot.1_Missense_Mutation_p.D119N|CYP4F2_uc010xou.1_Missense_Mutation_p.D119N	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	268					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						ATGACGGCATCTGTGAAGTCG	0.552													10	60					0	0	0.000443	0	0
UNC13A	23025	broad.mit.edu	37	19	17729741	17729741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:17729741C>T	uc002nhd.2	-	38	4567	c.4567G>A	c.(4567-4569)GAG>AAG	p.E1523K		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1435	MHD2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TGACCCAGCTCCTTGGCTGCA	0.567													17	45					0	0	0.001882	0	0
ZNF85	7639	broad.mit.edu	37	19	21131852	21131852	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:21131852A>G	uc002npg.3	+	4	659	c.532A>G	c.(532-534)AAA>GAA	p.K178E	ZNF85_uc010ecn.2_Missense_Mutation_p.K113E|ZNF85_uc010eco.2_Missense_Mutation_p.K126E|ZNF85_uc002npi.2_Missense_Mutation_p.K119E	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	178	C2H2-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						CAAATGTACAAAATGTGGCAA	0.294													13	53					0	0	0.001368	0	0
ZNF676	163223	broad.mit.edu	37	19	22362861	22362861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:22362861C>T	uc002nqs.1	-	3	1976	c.1658G>A	c.(1657-1659)AGA>AAA	p.R553K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	553	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AGTATGAATTCTCTTGTGTCT	0.378													4	29					0	0	0.000248	0	0
RYR1	6261	broad.mit.edu	37	19	39038922	39038922	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:39038922G>A	uc002oit.2	+	89	12274	c.12144G>A	c.(12142-12144)GTG>GTA	p.V4048V	RYR1_uc002oiu.2_Silent_p.V4043V|RYR1_uc002oiv.1_Silent_p.V957V	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4048					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	ACATGCTCGTGGAATCCTCAT	0.567													8	24					0	0	0.000443	0	0
PAK4	10298	broad.mit.edu	37	19	39665671	39665671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:39665671G>A	uc002okj.1	+	7	1660	c.1199G>A	c.(1198-1200)GGA>GAA	p.G400E	PAK4_uc002okl.1_Missense_Mutation_p.G400E|PAK4_uc002okn.1_Missense_Mutation_p.G400E|PAK4_uc002okm.1_Missense_Mutation_p.G247E|PAK4_uc002oko.1_Missense_Mutation_p.G247E|PAK4_uc002okp.1_Missense_Mutation_p.G310E	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	400	Protein kinase.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			TTCCTGGAAGGAGGCGCCCTC	0.597													5	73					0	0	0.001168	0	0
PSG6	5675	broad.mit.edu	37	19	43585056	43585056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:43585056C>T	uc002ovi.2	-	2	500	c.407G>A	c.(406-408)GGA>GAA	p.G136E	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Missense_Mutation_p.G136E|PSG2_uc002ovq.3_Missense_Mutation_p.G136E|PSG2_uc010eiq.1_Missense_Mutation_p.G136E|PSG2_uc002ovs.3_Missense_Mutation_p.G136E|PSG2_uc002ovt.3_Missense_Mutation_p.G136E			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	135	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GGTGAAATATCCAGTTACTCC	0.502													14	95					0	0	0.005443	0	0
CBLC	23624	broad.mit.edu	37	19	45297477	45297477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:45297477C>T	uc002ozs.2	+	9	1364	c.1301C>T	c.(1300-1302)CCT>CTT	p.P434L	CBLC_uc010ejt.2_Missense_Mutation_p.P388L	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	434					cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				CTTTCGGCTCCTCCATTGCCC	0.627			M		AML								18	99					0	0	0.001882	0	0
CKM	1158	broad.mit.edu	37	19	45815063	45815063	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:45815063G>A	uc002pbd.2	-	5	671	c.597C>T	c.(595-597)TCC>TCT	p.S199S		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	199	Phosphagen kinase C-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	GCAGCAGCGGGGACACGGGCT	0.657													6	13					0	0	0.001984	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307711	46307711	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:46307711C>G	uc002pdm.2	-	3	1595	c.1452G>C	c.(1450-1452)CAG>CAC	p.Q484H	RSPH6A_uc002pdl.2_Missense_Mutation_p.Q220H	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	484						intracellular				ovary(1)|central_nervous_system(1)	2						TGCGGGCTATCTGGGCCCGCA	0.642													9	27					0	0	0.004482	0	0
SHANK1	50944	broad.mit.edu	37	19	51165351	51165351	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:51165351G>A	uc002psx.1	-	23	6376	c.6357C>T	c.(6355-6357)TTC>TTT	p.F2119F	SHANK1_uc002psw.1_Silent_p.F1503F	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	2119	SAM.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CGTGGTCCAGGAACTGGGCTC	0.617													9	29					0	0	0.000673	0	0
KLK13	26085	broad.mit.edu	37	19	51563731	51563732	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:51563731_51563732GA>AC	uc002pvn.2	-	2	240_241	c.197_198TC>GT	c.(196-198)GTC>GGT	p.V66G	KLK13_uc002pvl.2_RNA|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_RNA|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Missense_Mutation_p.V66G|KLK13_uc002pvq.2_RNA|KLK13_uc010eoo.2_Intron|KLK13_uc002pvr.2_Missense_Mutation_p.V66G	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	66	Peptidase S1.				proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		ATTTGGGGTGGACCAGGACTCC	0.559													8	32					0	0	0.004672	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918076	51918076	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:51918076A>G	uc002pwo.2	-	8	2231	c.1615_splice	c.e8+1	p.D539_splice	SIGLEC10_uc002pwp.2_Splice_Site_p.D481_splice|SIGLEC10_uc002pwq.2_Intron|SIGLEC10_uc002pwr.2_Intron|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Intron|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor						cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CGGCCCCCTAACCTGGCAGCT	0.637													15	55					0	0	0.006122	0	0
CEACAM18	729767	broad.mit.edu	37	19	51981873	51981873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:51981873C>T	uc002pwv.1	+	2	160	c.160C>T	c.(160-162)CTC>TTC	p.L54F		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	54						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GGGACCCCTCCTCCTGGAGGA	0.622													5	16					0	0	0.001168	0	0
ZSCAN5A	79149	broad.mit.edu	37	19	56736307	56736307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:56736307C>T	uc002qmq.2	-	2	275	c.109G>A	c.(109-111)GAC>AAC	p.D37N	ZSCAN5A_uc010ygi.1_Intron|ZSCAN5A_uc002qmr.2_Missense_Mutation_p.D37N|ZSCAN5A_uc002qms.1_Missense_Mutation_p.D37N	NM_024303	NP_077279	Q9BUG6	ZSA5A_HUMAN	zinc finger and SCAN domain containing 5A	37					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGGTCCACGTCGTGATTTCCA	0.527													5	52					0	0	0.001168	0	0
ZIM3	114026	broad.mit.edu	37	19	57646552	57646552	+	Missense_Mutation	SNP	G	A	A	rs150510557		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr19:57646552G>A	uc002qnz.1	-	5	1539	c.1153C>T	c.(1153-1155)CAT>TAT	p.H385Y		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	385	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.H385Y(1)		pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCCCCAGTATGGATTTTTTTA	0.393													16	94					0	0	0.003163	0	0
TMEM18	129787	broad.mit.edu	37	2	669634	669634	+	Silent	SNP	C	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:669634C>A	uc002qwl.2	-	5	463	c.369G>T	c.(367-369)CTG>CTT	p.L123L	TMEM18_uc002qwk.2_RNA	NM_152834	NP_690047	Q96B42	TMM18_HUMAN	transmembrane protein 18	123	Potential.				cell migration	integral to membrane|nuclear membrane				ovary(1)	1	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;5.27e-05)|all_epithelial(98;2.11e-06)|Ovarian(717;0.0253)		all cancers(51;1.95e-21)|Epithelial(75;9.47e-21)|OV - Ovarian serous cystadenocarcinoma(76;8.15e-18)|GBM - Glioblastoma multiforme(21;0.0285)		GTGCATTCTTCAGGTCAGTCA	0.358													12	25					4.3838e-07	1.96202e-06	0.001855	1	0
LPIN1	23175	broad.mit.edu	37	2	11905715	11905715	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:11905715G>A	uc010yjn.1	+	3	322	c.48G>A	c.(46-48)AAG>AAA	p.K16K	LPIN1_uc010yjm.1_Silent_p.K65K|LPIN1_uc002rbt.2_Silent_p.K16K|LPIN1_uc002rbs.2_Silent_p.K16K|LPIN1_uc010exi.1_RNA|hsa-mir-548s|MI0014141_5'Flank	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	16	N-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		TCACCGTGAAGGAGCTCTACA	0.507													20	36					0	0	0.002780	0	0
SRBD1	55133	broad.mit.edu	37	2	45789855	45789855	+	Missense_Mutation	SNP	G	C	C	rs150753231		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:45789855G>C	uc002rus.2	-	10	1422	c.1346C>G	c.(1345-1347)ACG>AGG	p.T449R	SRBD1_uc010yoc.1_5'UTR	NM_018079	NP_060549	Q8N5C6	SRBD1_HUMAN	S1 RNA binding domain 1	449					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		hydrolase activity, acting on ester bonds|RNA binding			central_nervous_system(1)	1		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)	LUSC - Lung squamous cell carcinoma(58;0.0917)|Lung(47;0.154)			GACCTTAACCGTCAGTACCTT	0.363													4	39					0	0	0.000248	0	0
CCDC88A	55704	broad.mit.edu	37	2	55555445	55555445	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:55555445G>A	uc002ryv.2	-	17	3821	c.2979C>T	c.(2977-2979)CGC>CGT	p.R993R	CCDC88A_uc010yoz.1_Silent_p.R994R|CCDC88A_uc010ypa.1_Silent_p.R993R|CCDC88A_uc002ryu.2_Silent_p.R276R|CCDC88A_uc002rys.2_5'UTR|CCDC88A_uc002ryw.2_Silent_p.R277R|CCDC88A_uc010fby.1_5'UTR	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	994	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						TAAGTTCTTGGCGCAATTGCT	0.274													4	10					0	0	0.001168	0	0
CTNNA2	1496	broad.mit.edu	37	2	80646628	80646628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:80646628C>T	uc010ysh.1	+	8	1197	c.1192C>T	c.(1192-1194)CCT>TCT	p.P398S	CTNNA2_uc010yse.1_Missense_Mutation_p.P398S|CTNNA2_uc010ysf.1_Missense_Mutation_p.P398S|CTNNA2_uc010ysg.1_Missense_Mutation_p.P398S|CTNNA2_uc010ysi.1_Missense_Mutation_p.P30S	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	398					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AACCAATGTTCCTTTGCTAGT	0.393													28	40					0	0	0.005443	0	0
LRP1B	53353	broad.mit.edu	37	2	141473615	141473615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:141473615C>T	uc002tvj.1	-	37	6922	c.5950G>A	c.(5950-5952)GGT>AGT	p.G1984S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1984	Extracellular (Potential).|LDL-receptor class B 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGGAAAGAACCATTGAGTCTT	0.343										TSP Lung(27;0.18)			10	93					0	0	0.000673	0	0
DFNB59	494513	broad.mit.edu	37	2	179323268	179323268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:179323268G>A	uc002umi.3	+	5	937	c.581G>A	c.(580-582)GGA>GAA	p.G194E	DFNB59_uc002umj.3_Missense_Mutation_p.G194E	NM_001042702	NP_001036167	Q0ZLH3	PJVK_HUMAN	deafness, autosomal recessive 59	194					sensory perception of sound						0			OV - Ovarian serous cystadenocarcinoma(117;0.00406)|Epithelial(96;0.0159)|all cancers(119;0.0564)			AATCCCAAGGGAAGGGACAAA	0.353													18	40					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179397387	179397387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:179397387C>T	uc010zfg.1	-	307	96475	c.96251G>A	c.(96250-96252)AGA>AAA	p.R32084K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R25779K|TTN_uc010zfi.1_Missense_Mutation_p.R25712K|TTN_uc010zfj.1_Missense_Mutation_p.R25587K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33011							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGAGAACGTCTTCTAGGTCG	0.463													24	25					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179589042	179589042	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:179589042G>A	uc010zfg.1	-	69	17552	c.17328C>T	c.(17326-17328)TTC>TTT	p.F5776F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F2437F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6703							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGAACCTGGAAAGTGTATG	0.398													17	27					0	0	0.001523	0	0
PDE1A	5136	broad.mit.edu	37	2	183104998	183104998	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:183104998A>C	uc002uos.2	-	4	321	c.237T>G	c.(235-237)GAT>GAG	p.D79E	PDE1A_uc010zfp.1_5'UTR|PDE1A_uc002uoq.1_Missense_Mutation_p.D79E|PDE1A_uc010zfq.1_Missense_Mutation_p.D79E|PDE1A_uc002uor.2_Missense_Mutation_p.D63E|PDE1A_uc002uou.2_Missense_Mutation_p.D45E	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2	79					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			CACTGAGCTCATCTTCAGTAT	0.363													5	38					0	0	0.000602	0	0
NBEAL1	65065	broad.mit.edu	37	2	204030954	204030954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:204030954C>T	uc002uzt.3	+	36	6043	c.5710C>T	c.(5710-5712)CCT>TCT	p.P1904S	NBEAL1_uc002uzs.3_Missense_Mutation_p.P614S	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	1904							binding			ovary(1)|skin(1)	2						TGATGTAATTCCTGGCAGATT	0.333													105	222					0	0	0.003610	0	0
COL6A3	1293	broad.mit.edu	37	2	238303716	238303716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr2:238303716C>T	uc002vwl.2	-	3	508	c.223G>A	c.(223-225)GAT>AAT	p.D75N	COL6A3_uc002vwo.2_Intron|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Intron|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Missense_Mutation_p.D75N	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	75	VWFA 1.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AAATGGAAATCATTTTCTCCC	0.388													10	24					0	0	0.000978	0	0
PLCB1	23236	broad.mit.edu	37	20	8696984	8696984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:8696984G>A	uc002wnb.2	+	13	1327	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K	PLCB1_uc010zrb.1_Missense_Mutation_p.E341K|PLCB1_uc002wna.2_Missense_Mutation_p.E442K|PLCB1_uc002wnc.1_Missense_Mutation_p.E341K|PLCB1_uc002wnd.1_Missense_Mutation_p.E19K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	442	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GGAGCCCCTGGAAAAATATCC	0.438													11	28					0	0	0.001368	0	0
FOXS1	2307	broad.mit.edu	37	20	30432786	30432786	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:30432786C>G	uc002wwt.1	-	1	635	c.560G>C	c.(559-561)CGG>CCG	p.R187P		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	187					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CATGGGTGGCCGAGGCCTGCC	0.627													10	24					0	0	0.000673	0	0
BPIL3	128859	broad.mit.edu	37	20	31629805	31629805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:31629805C>T	uc010zuc.1	+	12	1172	c.1172C>T	c.(1171-1173)TCG>TTG	p.S391L	BPIL3_uc010zud.1_Missense_Mutation_p.S330L	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	391						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						AAGTCCTCATCGATTGGCAAC	0.602													4	18					0	0	0.000602	0	0
GDF5	8200	broad.mit.edu	37	20	34022260	34022260	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:34022260C>T	uc002xck.1	-	2	1272	c.953G>A	c.(952-954)CGG>CAG	p.R318Q	GDF5_uc010gfc.1_Missense_Mutation_p.R318Q|uc002xcj.2_Missense_Mutation_p.P224L|GDF5_uc010zvc.1_Missense_Mutation_p.R318Q	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	318					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GGCCCTGCCCCGTTCCCAGGC	0.657													4	9					0	0	0.000248	0	0
TOX2	84969	broad.mit.edu	37	20	42694499	42694499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:42694499C>T	uc002xlf.3	+	6	1071	c.1054C>T	c.(1054-1056)CCT>TCT	p.P352S	TOX2_uc010ggo.2_Missense_Mutation_p.P370S|TOX2_uc002xle.3_Missense_Mutation_p.P328S|TOX2_uc010ggp.2_Missense_Mutation_p.P328S|TOX2_uc002xlg.2_Intron|TOX2_uc010zwk.1_Missense_Mutation_p.P248S	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	352					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			TGGGGCCTCCCCTGCCAGCCT	0.697													9	33					0	0	0.000673	0	0
SPATA2	9825	broad.mit.edu	37	20	48522808	48522808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:48522808G>A	uc010gie.2	-	3	1261	c.911C>T	c.(910-912)TCC>TTC	p.S304F	SPATA2_uc002xuw.2_Missense_Mutation_p.S304F|SPATA2_uc010zyn.1_Missense_Mutation_p.S167F	NM_001135773	NP_001129245	Q9UM82	SPAT2_HUMAN	spermatogenesis associated 2	304					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2	Hepatocellular(150;0.133)		BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			GCCGTGGGGGGAGCTGGCCAT	0.642													13	47					0	0	0.001855	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870548	51870549	+	Missense_Mutation	DNP	GG	AA	AA	rs149724132	byFrequency	TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:51870548_51870549GG>AA	uc002xwo.2	+	2	1507_1508	c.551_552GG>AA	c.(550-552)CGG>CAA	p.R184Q		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	184					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TTGCCTTCTCGGTCCGTCTCGA	0.559													8	38					0	0	0.004672	0	0
CYP24A1	1591	broad.mit.edu	37	20	52775632	52775632	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:52775632T>A	uc002xwv.2	-	8	1419	c.1021A>T	c.(1021-1023)AAT>TAT	p.N341Y	CYP24A1_uc002xwu.1_Missense_Mutation_p.N199Y|CYP24A1_uc002xww.2_Missense_Mutation_p.N341Y	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	341					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	CGGGATAAATTGTAGAGAATC	0.368													16	55					0	0	0.000958	0	0
CDH4	1002	broad.mit.edu	37	20	60448822	60448822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr20:60448822G>A	uc002ybn.1	+	7	930	c.916G>A	c.(916-918)GAC>AAC	p.D306N	CDH4_uc002ybp.1_Missense_Mutation_p.D232N	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	306	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CGATGCTGACGACAGCACCAC	0.622													10	32					0	0	0.000673	0	0
DOPEY2	9980	broad.mit.edu	37	21	37650525	37650525	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr21:37650525C>G	uc002yvg.2	+	30	5920	c.5841C>G	c.(5839-5841)AGC>AGG	p.S1947R	DOPEY2_uc011aeb.1_Missense_Mutation_p.S1896R	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1947					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						ATGCTCCCAGCTTCCGGGCTG	0.537													9	32					0	0	0.000443	0	0
DSCAM	1826	broad.mit.edu	37	21	41559849	41559849	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr21:41559849C>T	uc002yyq.1	-	13	3071	c.2619G>A	c.(2617-2619)GAG>GAA	p.E873E	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	873	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding	p.E873*(1)		ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTCCACGGTCCTCCCCATAAG	0.413													8	35					0	0	0.003080	0	0
DSCAM	1826	broad.mit.edu	37	21	42080554	42080554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr21:42080554C>T	uc002yyq.1	-	2	639	c.187G>A	c.(187-189)GGC>AGC	p.G63S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	63	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATCTCCTCGCCCGTGGCTAGG	0.587													15	55					0	0	0.004990	0	0
MCM3AP	8888	broad.mit.edu	37	21	47700421	47700421	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr21:47700421C>T	uc002zir.1	-	3	1548	c.1512G>A	c.(1510-1512)AGG>AGA	p.R504R		NM_003906	NP_003897	O60318	MCM3A_HUMAN	minichromosome maintenance complex component 3	504					DNA replication|protein import into nucleus	cytosol|nucleus	DNA binding|nucleotide binding			large_intestine(2)|lung(1)|ovary(1)|skin(1)	5	Breast(49;0.112)					TTATTTTCTTCCTGTGCCAAA	0.289													11	53					0	0	0.000978	0	0
HIC2	23119	broad.mit.edu	37	22	21799328	21799328	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:21799328C>T	uc002zur.3	+	3	374	c.144C>T	c.(142-144)GTC>GTT	p.V48V	HIC2_uc002zus.3_Silent_p.V48V	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	48	BTB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				TGTGTGACGTCATCATCATGG	0.602													10	41					0	0	0.000673	0	0
LOC96610	96610	broad.mit.edu	37	22	22677061	22677061	+	RNA	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:22677061C>T	uc011aim.1	+	36		c.3101C>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CCCTCAGTGTCTGCGGCCCCA	0.562													7	46					0	0	0.001984	0	0
PRAME	23532	broad.mit.edu	37	22	22892369	22892369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:22892369C>T	uc002zwf.2	-	4	888	c.732G>A	c.(730-732)TGG>TGA	p.W244*	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Nonsense_Mutation_p.W228*|PRAME_uc010gtr.2_Nonsense_Mutation_p.W244*|PRAME_uc002zwg.2_Nonsense_Mutation_p.W244*|PRAME_uc002zwh.2_Nonsense_Mutation_p.W244*|PRAME_uc002zwi.2_Nonsense_Mutation_p.W244*|PRAME_uc002zwj.2_Nonsense_Mutation_p.W244*|PRAME_uc002zwk.2_Nonsense_Mutation_p.W244*	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	244					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		TGGGTAGCTTCCAGGTACAAG	0.458													6	37					0	0	0.001168	0	0
HMOX1	3162	broad.mit.edu	37	22	35789528	35789528	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:35789528C>T	uc003ant.1	+	5	884	c.804C>T	c.(802-804)CTC>CTT	p.L268L		NM_002133	NP_002124	P09601	HMOX1_HUMAN	heme oxygenase (decyclizing) 1	268					angiogenesis|anti-apoptosis|cell death|cellular iron ion homeostasis|endothelial cell proliferation|erythrocyte homeostasis|heme catabolic process|heme oxidation|intracellular protein kinase cascade|low-density lipoprotein particle clearance|negative regulation of leukocyte migration|negative regulation of smooth muscle cell proliferation|positive regulation of chemokine biosynthetic process|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of smooth muscle cell proliferation|protein homooligomerization|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hydrogen peroxide|response to nicotine|smooth muscle hyperplasia|transmembrane transport|wound healing involved in inflammatory response	endoplasmic reticulum membrane|extracellular space|microsome	enzyme binding|heme binding|heme oxygenase (decyclizing) activity|protein homodimerization activity|signal transducer activity			ovary(1)	1					NADH(DB00157)	CTCCGCTTCTCCGATGGGTCC	0.562													14	72					0	0	0.001855	0	0
MYH9	4627	broad.mit.edu	37	22	36702008	36702008	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:36702008G>A	uc003apg.2	-	17	2358	c.2127C>T	c.(2125-2127)CCC>CCT	p.P709P	MYH9_uc003aph.1_Silent_p.P573P	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	709	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CCACCCTGTTGGGGAAGCCCT	0.662			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				10	64					0	0	0.000673	0	0
MYH9	4627	broad.mit.edu	37	22	36702035	36702035	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr22:36702035G>A	uc003apg.2	-	17	2331	c.2100C>T	c.(2098-2100)GGC>GGT	p.G700G	MYH9_uc003aph.1_Silent_p.G564G	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	700	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						AGATACGGATGCCCTCGAGAA	0.642			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				9	64					0	0	0.004482	0	0
CNTN6	27255	broad.mit.edu	37	3	1444027	1444027	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:1444027G>C	uc003boz.2	+	22	3110	c.2843G>C	c.(2842-2844)AGT>ACT	p.S948T	CNTN6_uc011asj.1_Missense_Mutation_p.S876T|CNTN6_uc003bpa.2_Missense_Mutation_p.S948T	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	948	Fibronectin type-III 4.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AACAGACAGAGTAAAACTCAT	0.368													8	31					0	0	0.000443	0	0
CNTN6	27255	broad.mit.edu	37	3	1445017	1445017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:1445017G>A	uc003boz.2	+	23	3269	c.3002G>A	c.(3001-3003)GGA>GAA	p.G1001E	CNTN6_uc011asj.1_Missense_Mutation_p.G929E|CNTN6_uc003bpa.2_Missense_Mutation_p.G1001E	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	1001					axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AGTTCCAGAGGAATTCAATTC	0.299													4	47					0	0	0.000602	0	0
TATDN2	9797	broad.mit.edu	37	3	10320601	10320602	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:10320601_10320602GG>AA	uc003bvg.2	+	7	2759_2760	c.2178_2179GG>AA	c.(2176-2181)CCGGGC>CCAAGC	p.G727S	TATDN2_uc003bvf.2_Missense_Mutation_p.G727S|TATDN2_uc011atr.1_Missense_Mutation_p.G727S|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA|TATDN2_uc011atu.1_5'Flank|TATDN2_uc011atv.1_5'Flank|GHRLOS_uc011atw.1_5'Flank|GHRLOS_uc011atx.1_5'Flank|GHRLOS_uc011aty.1_5'Flank|GHRLOS_uc011atz.1_5'Flank|GHRLOS_uc011aua.1_5'Flank|GHRLOS_uc010hdl.2_5'Flank|GHRLOS_uc011aub.1_5'Flank|GHRLOS_uc010hdm.2_5'Flank|GHRLOS_uc011auc.1_5'Flank|GHRLOS_uc011aud.1_5'Flank|GHRLOS_uc011aue.1_5'Flank|GHRLOS_uc011auf.1_5'Flank|GHRLOS_uc011aug.1_5'Flank	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	727						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						ATGCCCACCCGGGCCTGGCCTT	0.535													4	30					0	0	0.004672	0	0
TSEN2	80746	broad.mit.edu	37	3	12531302	12531302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:12531302G>A	uc003bxc.2	+	2	390	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TSEN2_uc003bwy.2_Missense_Mutation_p.M1I|TSEN2_uc003bwz.2_Missense_Mutation_p.M1I|TSEN2_uc003bxa.2_Missense_Mutation_p.M1I|TSEN2_uc011auq.1_Missense_Mutation_p.M1I|TSEN2_uc003bxb.2_Missense_Mutation_p.M1I|TSEN2_uc011aur.1_5'UTR	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	1					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						TCTGAAAAATGGCAGAAGCAG	0.408													45	164					0	0	0.002852	0	0
GOLGA4	2803	broad.mit.edu	37	3	37367211	37367211	+	Silent	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:37367211T>C	uc003cgv.2	+	14	4138	c.3834T>C	c.(3832-3834)CTT>CTC	p.L1278L	GOLGA4_uc010hgr.1_Silent_p.L839L|GOLGA4_uc003cgw.2_Silent_p.L1300L|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Silent_p.L1159L	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	1278	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						AAGCACAACTTAGACAGTTGA	0.353													15	32					0	0	0.003163	0	0
KIF9	64147	broad.mit.edu	37	3	47282423	47282423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:47282423C>T	uc010hjp.2	-	18	2396	c.1792G>A	c.(1792-1794)GAA>AAA	p.E598K	KIF9_uc003cqx.2_Missense_Mutation_p.E598K|KIF9_uc003cqy.2_Missense_Mutation_p.E533K|KIF9_uc011bat.1_RNA|uc003cqw.1_Intron	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	598					blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		GATTTGTTTTCTTTGAAAATT	0.488													21	69					0	0	0.002299	0	0
SCAP	22937	broad.mit.edu	37	3	47470067	47470067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:47470067G>A	uc003crh.1	-	4	601	c.346C>T	c.(346-348)CGT>TGT	p.R116C	SCAP_uc011baz.1_Intron|SCAP_uc003crg.2_Intron	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	116	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		AAAGGTGAACGAAATACATCT	0.557													19	57					0	0	0.006122	0	0
CDC25A	993	broad.mit.edu	37	3	48219437	48219437	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:48219437G>A	uc003csh.1	-	7	955	c.591C>T	c.(589-591)TTC>TTT	p.F197F	CDC25A_uc003csi.1_Silent_p.F157F	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	197					cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		AAAGAGGAATGAAATTCCCTG	0.428													22	78					0	0	0.003954	0	0
PBRM1	55193	broad.mit.edu	37	3	52610575	52610575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:52610575G>A	uc003des.2	-	22	3685	c.3673C>T	c.(3673-3675)CCC>TCC	p.P1225S	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.P1225S|PBRM1_uc003der.2_Missense_Mutation_p.P1193S|PBRM1_uc003det.2_Missense_Mutation_p.P1240S|PBRM1_uc003deu.2_Missense_Mutation_p.P1240S|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.P1225S|PBRM1_uc010hmk.1_Missense_Mutation_p.P1200S|PBRM1_uc003dey.2_Missense_Mutation_p.P1200S|PBRM1_uc003dez.1_Missense_Mutation_p.P1224S	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1225	BAH 2.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CATGTCATGGGGCAGGTTTCT	0.289			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								9	37					0	0	0.000443	0	0
SFMBT1	51460	broad.mit.edu	37	3	52939159	52939159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:52939159G>A	uc003dgf.2	-	22	3163	c.2594C>T	c.(2593-2595)GCC>GTC	p.A865V	SFMBT1_uc010hmr.2_Missense_Mutation_p.A769V|SFMBT1_uc003dgg.2_Missense_Mutation_p.A865V|SFMBT1_uc003dgh.2_Missense_Mutation_p.A865V	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	865					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		TTCTCAGTTGGCAAACTGCTC	0.448													6	37					0	0	0.001984	0	0
GABRR3	200959	broad.mit.edu	37	3	97744447	97744447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:97744447C>T	uc011bgr.1	-	2	202	c.202G>A	c.(202-204)GAG>AAG	p.E68K		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	68	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						TCGTTGTCCTCTATATGGAGA	0.398													10	38					0	0	0.000673	0	0
MORC1	27136	broad.mit.edu	37	3	108751625	108751625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:108751625C>T	uc003dxl.2	-	16	1594	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	MORC1_uc011bhn.1_Missense_Mutation_p.E503K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	503	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AATTCTTTTTCCTGATAATTA	0.289													10	45					0	0	0.001368	0	0
SLC9A10	285335	broad.mit.edu	37	3	111996615	111996615	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:111996615G>A	uc003dyu.2	-	5	633	c.411C>T	c.(409-411)ACC>ACT	p.T137T	SLC9A10_uc011bhu.1_5'UTR|SLC9A10_uc010hqc.2_Silent_p.T137T	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	137					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATAACCATTGGGTAGGCTTCA	0.358													12	54					0	0	0.000978	0	0
LOC100125556	100125556	broad.mit.edu	37	3	125647396	125647396	+	RNA	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:125647396T>C	uc003eif.3	+	5		c.570T>C			LOC100125556_uc003eid.3_RNA|LOC100125556_uc003eie.3_RNA	NR_024251				Homo sapiens family with sequence similarity 86, member A pseudogene, mRNA (cDNA clone IMAGE:4425123).												0						TGTTTCCCTATGAAGAGCACT	0.502													4	98					0	0	0.000602	0	0
RASA2	5922	broad.mit.edu	37	3	141272772	141272772	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:141272772G>A	uc003etz.1	+	6	601	c.601G>A	c.(601-603)GGC>AGC	p.G201S	RASA2_uc010huq.1_Missense_Mutation_p.G201S|RASA2_uc003eua.1_Missense_Mutation_p.G201S|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	201	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TTCTCTAGTGGGCCCTTCTAG	0.323													9	90					0	0	0.000443	0	0
SI	6476	broad.mit.edu	37	3	164716418	164716418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:164716418G>A	uc003fei.2	-	38	4512	c.4450C>T	c.(4450-4452)CGT>TGT	p.R1484C		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1484	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TACGTGGAACGAGAAATTACA	0.383										HNSCC(35;0.089)			6	50					0	0	0.003080	0	0
MECOM	2122	broad.mit.edu	37	3	169099072	169099072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:169099072C>T	uc011bpj.1	-	2	681	c.278G>A	c.(277-279)GGA>GAA	p.G93E	MECOM_uc003ffl.2_Missense_Mutation_p.G65E|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.G93E|MECOM_uc011bpl.1_Missense_Mutation_p.G93E	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGTCCATATTCCTAGTCCTGC	0.483													19	74					0	0	0.000958	0	0
ECE2	9718	broad.mit.edu	37	3	183995065	183995065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:183995065G>A	uc003fni.3	+	4	681	c.643G>A	c.(643-645)GAG>AAG	p.E215K	ECE2_uc011brg.1_Missense_Mutation_p.E143K|ECE2_uc011brh.1_Missense_Mutation_p.E68K|ECE2_uc003fnl.3_Missense_Mutation_p.E143K|ECE2_uc003fnm.3_Missense_Mutation_p.E97K|ECE2_uc003fnk.3_Missense_Mutation_p.E68K|ECE2_uc011bri.1_Missense_Mutation_p.E130K|ECE2_uc010hxv.2_5'UTR	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	215	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CTGCCTTACAGAGGCCTGCAT	0.582													8	34					0	0	0.000673	0	0
POLR2H	5437	broad.mit.edu	37	3	184086000	184086001	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr3:184086000_184086001GG>AA	uc003fok.1	+	5	458_459	c.371_372GG>AA	c.(370-372)AGG>AAA	p.R124K	POLR2H_uc003foj.1_RNA	NM_006232	NP_006223	P52434	RPAB3_HUMAN	RNA polymerase II, polypeptide H	124					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA-directed RNA polymerase activity|protein binding|zinc ion binding				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CTGCTCATGAGGCTGCAGGGGG	0.569													7	46					0	0	0.004672	0	0
GABRG1	2565	broad.mit.edu	37	4	46060533	46060533	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:46060533C>T	uc003gxb.2	-	6	884	c.732G>A	c.(730-732)CGG>CGA	p.R244R		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	244	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CAGTTGAGTTCCGTAACCCTA	0.333													9	30					0	0	0.000673	0	0
SLC4A4	8671	broad.mit.edu	37	4	72425842	72425842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:72425842G>A	uc003hfy.2	+	23	3087	c.2970G>A	c.(2968-2970)ATG>ATA	p.M990I	SLC4A4_uc010iic.2_Missense_Mutation_p.M990I|SLC4A4_uc010iib.2_Missense_Mutation_p.M906I|SLC4A4_uc003hfz.2_Missense_Mutation_p.M990I|SLC4A4_uc003hgc.3_Missense_Mutation_p.M946I|SLC4A4_uc010iid.2_Missense_Mutation_p.M194I	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	990	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			GAAAAGGCATGGACTACCTCT	0.343													9	74					0	0	0.001368	0	0
HERC6	55008	broad.mit.edu	37	4	89304453	89304453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:89304453G>A	uc011cdi.1	+	2	463	c.280G>A	c.(280-282)GGA>AGA	p.G94R	HERC6_uc003hrp.1_RNA|HERC6_uc011cdj.1_Missense_Mutation_p.G94R|HERC6_uc011cdk.1_RNA|HERC6_uc011cdl.1_RNA	NM_017912	NP_060382	Q8IVU3	HERC6_HUMAN	hect domain and RLD 6 isoform 1	94	RCC1 2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			lung(3)|ovary(1)|kidney(1)	5		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		GTGCCACAAAGGAAGGGTCTT	0.483													4	4					0	0	0.000248	0	0
HERC3	8916	broad.mit.edu	37	4	89527050	89527050	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:89527050C>G	uc003hrw.1	+	3	242	c.76C>G	c.(76-78)CAG>GAG	p.Q26E	HERC3_uc003hrv.2_Missense_Mutation_p.Q26E|HERC3_uc011cdn.1_Intron	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	26	RCC1 1.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		GGCTGAGCCCCAGGTGTGTGG	0.502													3	60					0	0	0.000248	0	0
ADH1B	125	broad.mit.edu	37	4	100232054	100232054	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:100232054T>C	uc003hus.3	-	8	1055	c.971A>G	c.(970-972)AAG>AGG	p.K324R	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.K284R|ADH1B_uc011ceh.1_Missense_Mutation_p.K169R|ADH1B_uc011cei.1_Missense_Mutation_p.K284R	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	324					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	TTCTTTACTCTTAAAGCCTGA	0.328													13	65					0	0	0.004007	0	0
NPNT	255743	broad.mit.edu	37	4	106859511	106859511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:106859511G>A	uc003hya.2	+	5	644	c.439G>A	c.(439-441)GGA>AGA	p.G147R	NPNT_uc011cfc.1_Missense_Mutation_p.G164R|NPNT_uc011cfd.1_Missense_Mutation_p.G177R|NPNT_uc011cfe.1_Missense_Mutation_p.G177R|NPNT_uc010ilt.1_Missense_Mutation_p.G147R|NPNT_uc011cff.1_Missense_Mutation_p.G147R|NPNT_uc010ilu.1_Missense_Mutation_p.G43R	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	147	EGF-like 3.				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		TGTTGTTAAAGGACAAATACG	0.517													6	53					0	0	0.001168	0	0
ANK2	287	broad.mit.edu	37	4	114213607	114213607	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:114213607G>C	uc003ibe.3	+	21	2413	c.2313G>C	c.(2311-2313)CAG>CAC	p.Q771H	ANK2_uc003ibd.3_Missense_Mutation_p.Q750H|ANK2_uc003ibf.3_Missense_Mutation_p.Q771H|ANK2_uc011cgc.1_5'Flank|ANK2_uc003ibc.2_Missense_Mutation_p.Q747H|ANK2_uc011cgb.1_Missense_Mutation_p.Q786H	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	771	ANK 23.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCGCTCAGCAGGGTCACACGC	0.617													2	4					0	0	0.004672	0	0
MYOZ2	51778	broad.mit.edu	37	4	120107261	120107261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:120107261G>A	uc003icp.3	+	6	914	c.701G>A	c.(700-702)AGG>AAG	p.R234K		NM_016599	NP_057683	Q9NPC6	MYOZ2_HUMAN	myozenin 2	234							protein phosphatase 2B binding				0						TCCTTTAATAGGACTCCTAAG	0.388													11	39					0	0	0.001368	0	0
PDE5A	8654	broad.mit.edu	37	4	120528041	120528041	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:120528041G>A	uc003idh.2	-	2	719	c.564C>T	c.(562-564)TTC>TTT	p.F188F	PDE5A_uc003idf.2_Silent_p.F146F|PDE5A_uc003idg.2_Silent_p.F136F	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	188	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	CACAGACAAGGAACAGGGAAT	0.408													15	56					0	0	0.004990	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148802993	148802993	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:148802993A>G	uc003ilf.2	+	10	944	c.944A>G	c.(943-945)GAC>GGC	p.D315G	ARHGAP10_uc003ilg.2_5'UTR	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	315	PH.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		TTGCAGGGGGACGGAGAGGTG	0.408													3	60					0	0	0.000248	0	0
ANXA10	11199	broad.mit.edu	37	4	169086467	169086467	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:169086467A>G	uc003irm.2	+	6	615	c.470A>G	c.(469-471)AAC>AGC	p.N157S	ANXA10_uc003irn.2_Missense_Mutation_p.N29S	NM_007193	NP_009124	Q9UJ72	ANX10_HUMAN	annexin A10	157	Annexin 2.						calcium ion binding|calcium-dependent phospholipid binding				0		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0325)		ACTCTCATGAACTTGGTCCAG	0.323													5	33					0	0	0.001984	0	0
TLR3	7098	broad.mit.edu	37	4	187004921	187004921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr4:187004921C>T	uc003iyq.2	+	4	2182	c.2081C>T	c.(2080-2082)TCA>TTA	p.S694L	TLR3_uc011ckz.1_Missense_Mutation_p.S417L|TLR3_uc003iyr.2_Missense_Mutation_p.S417L	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	694	Lumenal (Potential).|LRRCT.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		TTTGATACATCATCTTGCAAA	0.423													25	124					0	0	0.001061	0	0
CDH18	1016	broad.mit.edu	37	5	19503173	19503173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:19503173C>T	uc003jgc.2	-	10	1935	c.1558G>A	c.(1558-1560)GGA>AGA	p.G520R	CDH18_uc003jgd.2_Missense_Mutation_p.G520R|CDH18_uc011cnm.1_Missense_Mutation_p.G520R	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	520	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AACCTTGGTCCATTGGCAAAA	0.333													5	34					0	0	0.001168	0	0
CDH18	1016	broad.mit.edu	37	5	19721469	19721469	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:19721469G>A	uc003jgc.2	-	4	1007	c.630C>T	c.(628-630)GTC>GTT	p.V210V	CDH18_uc003jgd.2_Silent_p.V210V|CDH18_uc011cnm.1_Silent_p.V210V	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	210	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TTTTAGGGTCGACGGAGAAGT	0.453													10	67					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	5	28927282	28927282	+	RNA	SNP	G	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:28927282G>T	uc003jgz.1	+	1		c.306G>T								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		AATTGAATCAGGGAGCTATGA	0.408													6	18					0.00116845	0.00518211	0.001168	1	0
GPR98	84059	broad.mit.edu	37	5	89923430	89923430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:89923430C>T	uc003kju.2	+	7	1171	c.1075C>T	c.(1075-1077)CAC>TAC	p.H359Y	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	359	Calx-beta 3.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGAATCGTTTCACATTATGTT	0.368													12	125					0	0	0.001855	0	0
GPR98	84059	broad.mit.edu	37	5	89992796	89992796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:89992796C>T	uc003kju.2	+	34	8084	c.7988C>T	c.(7987-7989)TCT>TTT	p.S2663F	GPR98_uc003kjt.2_Missense_Mutation_p.S369F|GPR98_uc003kjv.2_Missense_Mutation_p.S263F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2663	Calx-beta 18.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTGGATGACTCTGAACCAGAG	0.368													5	37					0	0	0.000602	0	0
PCSK1	5122	broad.mit.edu	37	5	95746679	95746679	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:95746679C>T	uc003kls.1	-	8	1100	c.894G>A	c.(892-894)GGG>GGA	p.G298G	PCSK1_uc010jbi.1_Intron	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	298	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGGACCCCTTCCCCTGTCTCC	0.473													6	41					0	0	0.004482	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302184	128302184	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:128302184C>T	uc003kuy.2	+	2	750	c.354C>T	c.(352-354)TTC>TTT	p.F118F	SLC27A6_uc003kuz.2_Silent_p.F118F	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	118					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		AGCCGGACTTCGTTCACGTGT	0.567													4	14					0	0	0.000248	0	0
PCDHA3	56145	broad.mit.edu	37	5	140183169	140183169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:140183169C>T	uc003lhf.2	+	1	2387	c.2387C>T	c.(2386-2388)TCA>TTA	p.S796L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.S796L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	796	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTTGATCTCTCAGCCAAAGTG	0.413													7	26					0	0	0.001984	0	0
PCDHB17	54661	broad.mit.edu	37	5	140536960	140536960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:140536960C>T	uc003lis.2	+	1	1381	c.1381C>T	c.(1381-1383)CGC>TGC	p.R461C		NR_001280				SubName: Full=Protocadherin-psi1;												0						CCTGTTCGTCCGCGAGAACAA	0.617													5	55					0	0	0.000602	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562470	140562470	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:140562470C>T	uc003liv.2	+	1	1491	c.336C>T	c.(334-336)AAC>AAT	p.N112N	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	112	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAATGGAAAACCCTTTAGAAA	0.398													4	14					0	0	0.000602	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784277	140784278	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:140784277_140784278CC>TT	uc003lkh.1	+	1	1758_1759	c.1758_1759CC>TT	c.(1756-1761)TACCTG>TATTTG	p.586_587YL>YL	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.586_587YL>YL	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	586_587	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCTGGCTACCTGGTGACCAA	0.599													7	60					0	0	0.004672	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159776541	159776541	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:159776541C>T	uc003lyd.2	-	3	631	c.627G>A	c.(625-627)CGG>CGA	p.R209R		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	164	C1q.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGATGGGCAGCCGCTCCCGTG	0.592													15	60					0	0	0.002450	0	0
GABRA6	2559	broad.mit.edu	37	5	161117246	161117246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:161117246G>A	uc003lyu.2	+	7	1051	c.713G>A	c.(712-714)AGG>AAG	p.R238K	GABRA6_uc003lyv.2_Missense_Mutation_p.R9K	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	238	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CACTTGCAAAGGAAGATGGGC	0.398										TCGA Ovarian(5;0.080)			6	48					0	0	0.001984	0	0
ZNF354C	30832	broad.mit.edu	37	5	178506357	178506357	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:178506357C>T	uc003mju.2	+	5	1039	c.924C>T	c.(922-924)GCC>GCT	p.A308A		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	308	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		GTGGTAAAGCCTTTAGCCAGT	0.428													14	81					0	0	0.004007	0	0
BTNL9	153579	broad.mit.edu	37	5	180477129	180477129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr5:180477129G>A	uc003mmt.2	+	4	727	c.496G>A	c.(496-498)GAA>AAA	p.E166K	BTNL9_uc011dhi.1_Missense_Mutation_p.E97K	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	166	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGCTTCAAGGAAGGAGGCAT	0.572													5	39					0	0	0.000602	0	0
F13A1	2162	broad.mit.edu	37	6	6225052	6225052	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:6225052C>T	uc003mwv.2	-	7	963	c.840G>A	c.(838-840)TGG>TGA	p.W280*	F13A1_uc011dib.1_Nonsense_Mutation_p.W217*	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	280					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	AGATATTGTCCCAGGATCCAA	0.498													9	49					0	0	0.000443	0	0
MDC1	9656	broad.mit.edu	37	6	30680344	30680344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:30680344C>T	uc003nrg.3	-	5	1815	c.1375G>A	c.(1375-1377)GAG>AAG	p.E459K	MDC1_uc003nrf.3_Missense_Mutation_p.E113K|MDC1_uc011dmp.1_Missense_Mutation_p.E331K|MDC1_uc003nrh.1_Missense_Mutation_p.E331K|MDC1_uc003nri.2_Missense_Mutation_p.E459K	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	459	Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						AGCTCTTCCTCCTCCACGTCT	0.493								Other_conserved_DNA_damage_response_genes					16	44					0	0	0.004990	0	0
VARS2	57176	broad.mit.edu	37	6	30892296	30892296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:30892296C>T	uc003nsc.1	+	25	3264	c.2632C>T	c.(2632-2634)CCC>TCC	p.P878S	VARS2_uc011dmx.1_Missense_Mutation_p.P878S|VARS2_uc011dmy.1_Missense_Mutation_p.P738S|VARS2_uc011dmz.1_Missense_Mutation_p.P908S|VARS2_uc011dna.1_Missense_Mutation_p.P876S|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.P316S|VARS2_uc010jsg.1_Missense_Mutation_p.P250S|VARS2_uc010jsh.1_Missense_Mutation_p.P22S	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	878					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CCCCCCTGCCCCCAGCATCTC	0.677													11	28					0	0	0.001368	0	0
BAT3	7917	broad.mit.edu	37	6	31609612	31609612	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:31609612G>A	uc003nvg.3	-	16	2670	c.2356C>T	c.(2356-2358)CGA>TGA	p.R786*	BAT3_uc003nvf.3_Nonsense_Mutation_p.R780*|BAT3_uc003nvh.3_Nonsense_Mutation_p.R780*|BAT3_uc003nvi.3_Nonsense_Mutation_p.R780*|BAT3_uc011dnw.1_Nonsense_Mutation_p.R780*|BAT3_uc011dnx.1_Nonsense_Mutation_p.R654*	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	786					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						AAGAAGGATCGCAGCTGGGGC	0.562													20	233					0	0	0.001216	0	0
BAT3	7917	broad.mit.edu	37	6	31616462	31616462	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:31616462G>C	uc003nvg.3	-	6	858	c.544C>G	c.(544-546)CGG>GGG	p.R182G	BAT3_uc003nvf.3_Missense_Mutation_p.R182G|BAT3_uc003nvh.3_Missense_Mutation_p.R182G|BAT3_uc003nvi.3_Missense_Mutation_p.R182G|BAT3_uc011dnw.1_Missense_Mutation_p.R182G|BAT3_uc011dnx.1_Missense_Mutation_p.R182G|BAT3_uc003nvj.1_Missense_Mutation_p.R182G	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	182					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						ACCTCCATCCGGGATAGTAAG	0.547													4	239					0	0	0.000602	0	0
VARS	7407	broad.mit.edu	37	6	31760052	31760052	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:31760052C>T	uc003nxe.2	-	6	1236	c.813G>A	c.(811-813)GAG>GAA	p.E271E	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	271					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	GATCCCGTTTCTCCCTCTTCT	0.562													28	144					0	0	0.004289	0	0
HLA-DOB	3112	broad.mit.edu	37	6	32783046	32783046	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:32783046C>A	uc003oca.2	-	2	233	c.136G>T	c.(136-138)GGG>TGG	p.G46W	TAP2_uc011dqf.1_Intron|HLA-DOB_uc011dqg.1_Missense_Mutation_p.G46W	NM_002120	NP_002111	P13765	DOB_HUMAN	major histocompatibility complex, class II, DO	46	Beta-1.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity			skin(1)	1						TTTTCTGTCCCGTTGGTGAAG	0.463													5	88					0.00116845	0.00518211	0.001168	1	0
ITPR3	3710	broad.mit.edu	37	6	33631628	33631628	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:33631628C>T	uc011drk.1	+	11	1338	c.1119C>T	c.(1117-1119)ACC>ACT	p.T373T		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	373	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						ACCCCACCACCTTGCAGAAAA	0.602													6	30					0	0	0.001984	0	0
C6orf222	389384	broad.mit.edu	37	6	36291299	36291299	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:36291299G>A	uc003oly.2	-	8	1420	c.1242C>T	c.(1240-1242)GTC>GTT	p.V414V		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	414										skin(2)|ovary(1)|breast(1)	4						CTTCCTGCTGGACTTGAGGTT	0.537													17	64					0	0	0.000958	0	0
PKHD1	5314	broad.mit.edu	37	6	51889856	51889856	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:51889856G>A	uc003pah.1	-	32	5028	c.4752C>T	c.(4750-4752)AGC>AGT	p.S1584S	PKHD1_uc003pai.2_Silent_p.S1584S	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1584	Extracellular (Potential).|IPT/TIG 11.		S -> I (in ARPKD).		cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					CACCATGTAAGCTGAAATTCT	0.438													12	30					0	0	0.001368	0	0
TBX18	9096	broad.mit.edu	37	6	85446745	85446745	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:85446745G>A	uc003pkl.1	-	8	1482	c.1482C>T	c.(1480-1482)CCC>CCT	p.P494P	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	494					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		ACTGGAGCTGGGGGGACATTC	0.537													19	72					0	0	0.001523	0	0
SLC35F1	222553	broad.mit.edu	37	6	118475630	118475630	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:118475630C>T	uc003pxx.3	+	2	397	c.196C>T	c.(196-198)CTA>TTA	p.L66L		NM_001029858	NP_001025029	Q5T1Q4	S35F1_HUMAN	solute carrier family 35, member F1	66	Helical; (Potential).				transport	integral to membrane				breast(1)	1				GBM - Glioblastoma multiforme(226;0.217)		CTCTGTGGCCCTAGGCCAGGT	0.388													18	60					0	0	0.000958	0	0
REPS1	85021	broad.mit.edu	37	6	139266690	139266690	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:139266690T>C	uc003qii.2	-	3	1001	c.422A>G	c.(421-423)AAG>AGG	p.K141R	REPS1_uc003qig.3_Missense_Mutation_p.K141R|REPS1_uc011edr.1_Missense_Mutation_p.K141R|REPS1_uc003qij.2_Missense_Mutation_p.K141R|REPS1_uc003qik.2_5'UTR	NM_031922	NP_114128	Q96D71	REPS1_HUMAN	RALBP1 associated Eps domain containing 1	141						coated pit|plasma membrane	calcium ion binding|SH3 domain binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(68;0.000434)|OV - Ovarian serous cystadenocarcinoma(155;0.000548)		TACGGATCCCTTTTTCACTTG	0.478													3	82					0	0	0.004672	0	0
UTRN	7402	broad.mit.edu	37	6	144811240	144811240	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:144811240A>G	uc003qkt.2	+	30	4260	c.4168A>G	c.(4168-4170)ACC>GCC	p.T1390A		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	1390	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CCATGAGCTAACCCTAGAGGA	0.433													23	60					0	0	0.002780	0	0
OPRM1	4988	broad.mit.edu	37	6	154360946	154360946	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:154360946C>T	uc003qpr.2	+	1	504	c.267C>T	c.(265-267)TTC>TTT	p.F89F	OPRM1_uc011efb.1_Silent_p.F137F|OPRM1_uc011efc.1_Intron|OPRM1_uc011efd.1_Intron|OPRM1_uc011efe.1_Silent_p.F182F|OPRM1_uc003qpn.2_Silent_p.F89F|OPRM1_uc003qpo.1_Silent_p.F89F|OPRM1_uc011eff.1_Silent_p.F89F|OPRM1_uc011efg.1_Silent_p.F89F|OPRM1_uc011efh.1_Silent_p.F89F|OPRM1_uc003qpq.1_Silent_p.F89F|OPRM1_uc003qpt.1_Silent_p.F89F|OPRM1_uc011efi.1_Silent_p.F89F|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	89	Helical; Name=1; (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	TCGGAAACTTCCTGGTCATGT	0.587													5	25					0	0	0.003080	0	0
PDE10A	10846	broad.mit.edu	37	6	165827142	165827142	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:165827142C>T	uc003qun.2	-	14	1336	c.1095G>A	c.(1093-1095)CGG>CGA	p.R365R	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.R295R|PDE10A_uc003quo.2_Silent_p.R375R	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	365	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	ACAGGATGTTCCGCGTGGTGT	0.473													7	23					0	0	0.001984	0	0
TTLL2	83887	broad.mit.edu	37	6	167753853	167753853	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr6:167753853G>A	uc003qvs.1	+	3	553	c.465G>A	c.(463-465)AGG>AGA	p.R155R	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	155	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		AGCTTACCAGGAAAGACTGTT	0.507													4	20					0	0	0.000248	0	0
C7orf26	79034	broad.mit.edu	37	7	6634067	6634067	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:6634067G>T	uc003sqo.1	+	3	416	c.416G>T	c.(415-417)CGG>CTG	p.R139L	C7orf26_uc003sqp.1_Missense_Mutation_p.R120L|C7orf26_uc003sqq.1_Intron	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	139										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		TCTTTCCAGCGGACGCCCGTG	0.512													5	158					0.00198382	0.00877182	0.001984	1	0
HECW1	23072	broad.mit.edu	37	7	43351401	43351401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:43351401G>A	uc003tid.1	+	4	672	c.67G>A	c.(67-69)GCG>ACG	p.A23T	HECW1_uc011kbi.1_Missense_Mutation_p.A23T|HECW1_uc003tie.1_Missense_Mutation_p.A55T	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	23					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GGCCGCCATGGCGTCTCCTTC	0.597													14	93					0	0	0.004007	0	0
NPC1L1	29881	broad.mit.edu	37	7	44578823	44578823	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:44578823C>T	uc003tlb.2	-	2	1229	c.1173G>A	c.(1171-1173)CGG>CGA	p.R391R	NPC1L1_uc003tlc.2_Silent_p.R391R|NPC1L1_uc011kbw.1_Silent_p.R391R|NPC1L1_uc003tld.2_Silent_p.R391R	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	391	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	CTTTCTCACTCCGGGCTTGGC	0.592													47	75					0	0	0.003610	0	0
TNS3	64759	broad.mit.edu	37	7	47333376	47333376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:47333376G>A	uc003tnv.2	-	25	4094	c.3727C>T	c.(3727-3729)CCG>TCG	p.P1243S	TNS3_uc003tnw.2_Missense_Mutation_p.P1243S	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1243	SH2.					focal adhesion	protein binding			ovary(4)	4						ACTCCCTTCGGGGTACACTCG	0.458													19	64					0	0	0.001882	0	0
PCLO	27445	broad.mit.edu	37	7	82764395	82764395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:82764395G>A	uc003uhx.2	-	3	2760	c.2471C>T	c.(2470-2472)CCT>CTT	p.P824L	PCLO_uc003uhv.2_Missense_Mutation_p.P824L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	770	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATCTGATGCAGGTCGAGGTAT	0.438													24	141					0	0	0.003954	0	0
GRM3	2913	broad.mit.edu	37	7	86416341	86416341	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:86416341C>T	uc003uid.2	+	3	2332	c.1233C>T	c.(1231-1233)CTC>CTT	p.L411L	GRM3_uc010lef.2_Silent_p.L409L|GRM3_uc010leg.2_Silent_p.L283L|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	411	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AGCGCACCCTCTGTCCCAACA	0.488													35	96					0	0	0.004878	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965299	88965299	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:88965299G>A	uc011khi.1	+	4	3541	c.3003G>A	c.(3001-3003)ACG>ACA	p.T1001T		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1001						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CAAGGACTACGGAGAAAGACA	0.363										HNSCC(36;0.09)			8	40					0	0	0.003080	0	0
PEX1	5189	broad.mit.edu	37	7	92131228	92131228	+	Missense_Mutation	SNP	G	T	T	rs61750414		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:92131228G>T	uc003uly.2	-	14	2488	c.2392C>A	c.(2392-2394)CGT>AGT	p.R798S	PEX1_uc011khr.1_Missense_Mutation_p.R590S|PEX1_uc010ley.2_Missense_Mutation_p.R741S|PEX1_uc011khs.1_Missense_Mutation_p.R476S|PEX1_uc011kht.1_Intron	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	798			R -> G (in PBD-CG1; Zellweger spectrum).		microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			ATACTCTGACGAGAGAGTCGA	0.398													5	145					0.000602214	0.00268708	0.000602	1	0
PPP1R9A	55607	broad.mit.edu	37	7	94919500	94919500	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:94919500A>T	uc003unp.2	+	16	3464	c.3182A>T	c.(3181-3183)AAA>ATA	p.K1061I	PPP1R9A_uc010lfj.2_Missense_Mutation_p.K1337I|PPP1R9A_uc011kif.1_Missense_Mutation_p.K1259I|PPP1R9A_uc003unq.2_Missense_Mutation_p.K1216I|PPP1R9A_uc011kig.1_Missense_Mutation_p.K1053I|PPP1R9A_uc003unr.2_Missense_Mutation_p.K350I	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1061	Potential.|Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			GCCCAAGAGAAAATGGAAAAA	0.453										HNSCC(28;0.073)			11	28					0	0	0.000673	0	0
TRRAP	8295	broad.mit.edu	37	7	98609128	98609128	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:98609128C>T	uc003upp.2	+	71	11474	c.11265C>T	c.(11263-11265)GTC>GTT	p.V3755V	TRRAP_uc011kis.1_Silent_p.V3726V|TRRAP_uc003upr.2_Silent_p.V3461V|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3755	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGATTGCGGTCGCCCGGTGCT	0.607													13	38					0	0	0.002450	0	0
CYP3A5	1577	broad.mit.edu	37	7	99273788	99273788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:99273788G>A	uc003urq.2	-	2	202	c.115C>T	c.(115-117)CCA>TCA	p.P39S	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urr.2_5'UTR|CYP3A5_uc011kiy.1_Missense_Mutation_p.P29S|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron|CYP3A5_uc003urt.2_Missense_Mutation_p.P39S	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	39					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	GTGGGCCCTGGAATTCCCAGT	0.453													14	40					0	0	0.000958	0	0
ALKBH4	54784	broad.mit.edu	37	7	102097862	102097862	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:102097862G>A	uc003uzl.2	-	3	893	c.888C>T	c.(886-888)TCC>TCT	p.S296S	ALKBH4_uc003uzm.2_Silent_p.S223S	NM_017621	NP_060091	Q9NXW9	ALKB4_HUMAN	alkB, alkylation repair homolog 4	296						cytoplasm|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTCCCTGGAAGGAGAGGGCGA	0.632													6	37					0	0	0.001984	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121650643	121650643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:121650643G>A	uc003vjy.2	+	12	1938	c.1543G>A	c.(1543-1545)GAT>AAT	p.D515N	PTPRZ1_uc003vjz.2_Missense_Mutation_p.D515N|PTPRZ1_uc011knt.1_5'UTR	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	515	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CACAGAAAAAGATATTTCCTT	0.413													23	48					0	0	0.002780	0	0
HIPK2	28996	broad.mit.edu	37	7	139311392	139311392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:139311392G>A	uc003vvf.3	-	6	1748	c.1574C>T	c.(1573-1575)CCC>CTC	p.P525L	HIPK2_uc003vvd.3_Missense_Mutation_p.P525L	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	525	Protein kinase.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GGTGACAAAGGGATGGTTCAG	0.423													9	17					0	0	0.004482	0	0
JHDM1D	80853	broad.mit.edu	37	7	139833371	139833371	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:139833371G>A	uc003vvm.2	-	3	370	c.366C>T	c.(364-366)TTC>TTT	p.F122F		NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	122					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					ATTCCTTAATGAAAGTTCTAG	0.373													15	36					0	0	0.002450	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				19	42					0	0	0.001523	0	0
BRAF	673	broad.mit.edu	37	7	140453138	140453138	+	Silent	SNP	T	G	G	rs121913374		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:140453138T>G	uc003vwc.3	-	15	1858	c.1797A>C	c.(1795-1797)ACA>ACC	p.T599T		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	599	Protein kinase.		T -> R (in CFC syndrome).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.A598_T599insV(6)|p.T599I(5)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.T599T(2)|p.T599_V600insT(2)|p.D594_T599del(1)|p.V600R(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GAGATTTCACTGTAGCTAGAC	0.363		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				19	43					0	0	0.001216	0	0
C7orf34	135927	broad.mit.edu	37	7	142637485	142637486	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:142637485_142637486GG>AA	uc003wca.2	+	2	296_297	c.255_256GG>AA	c.(253-258)GTGGGT>GTAAGT	p.G86S		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	61						extracellular region					0	Melanoma(164;0.059)					CCTCCTCAGTGGGTGAGATGTG	0.55													26	53					0	0	0.004672	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163850	150163851	+	Missense_Mutation	DNP	GG	AA	AA	rs150937690		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:150163850_150163851GG>AA	uc003whj.2	+	2	394_395	c.64_65GG>AA	c.(64-66)GGA>AAA	p.G22K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	22	GTP (Potential).					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ATGCCGCTCGGGAAAAAGTGCC	0.525													12	43					0	0	0.004672	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171244	150171244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr7:150171244G>A	uc003whj.2	+	4	1157	c.827G>A	c.(826-828)GGA>GAA	p.G276E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	276						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TTTCAGACCGGATTTAGTGAG	0.502													11	79					0	0	0.000978	0	0
MYOM2	9172	broad.mit.edu	37	8	2026819	2026819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:2026819G>A	uc003wpx.3	+	12	1405	c.1267G>A	c.(1267-1269)GAA>AAA	p.E423K	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	423	Fibronectin type-III 1.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TTGAAGATGTGAAGTAGGAAC	0.373													30	52					0	0	0.002445	0	0
CSMD1	64478	broad.mit.edu	37	8	3141843	3141843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:3141843C>T	uc011kwk.1	-	26	4369	c.3979G>A	c.(3979-3981)GAG>AAG	p.E1327K	CSMD1_uc011kwj.1_Missense_Mutation_p.E719K|CSMD1_uc003wqe.2_Missense_Mutation_p.E483K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1327	Extracellular (Potential).|CUB 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGAGCCATCTCCGTGTCGAAA	0.557											OREG0018505	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	14					0	0	0.001984	0	0
ENTPD4	9583	broad.mit.edu	37	8	23294537	23294537	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:23294537G>A	uc003xdl.2	-	10	1448	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F	ENTPD4_uc011kzu.1_Silent_p.F420F|ENTPD4_uc003xdm.2_Silent_p.F420F|ENTPD4_uc011kzv.1_Silent_p.F428F	NM_004901	NP_004892	Q9Y227	ENTP4_HUMAN	ectonucleoside triphosphate diphosphohydrolase 4	428	Lumenal (Potential).				UDP catabolic process	autophagic vacuole membrane|cytoplasmic vesicle|integral to Golgi membrane	uridine-diphosphatase activity			ovary(1)|kidney(1)	2		Prostate(55;0.114)		Colorectal(74;0.0161)|COAD - Colon adenocarcinoma(73;0.0649)		AGAAGCCATAGAATTCACTGT	0.463													20	69					0	0	0.001882	0	0
ADAM28	10863	broad.mit.edu	37	8	24200663	24200663	+	Missense_Mutation	SNP	C	T	T	rs139411715		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:24200663C>T	uc003xdy.2	+	17	1963	c.1880C>T	c.(1879-1881)ACC>ATC	p.T627I	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.T314I	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	627	EGF-like.|Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TACAAATCAACCAATTGCTCA	0.368													9	44					0	0	0.000443	0	0
NEFM	4741	broad.mit.edu	37	8	24774698	24774698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:24774698C>T	uc003xed.3	+	3	1363	c.1330C>T	c.(1330-1332)CCC>TCC	p.P444S	NEFM_uc011lac.1_Missense_Mutation_p.P444S|NEFM_uc010lue.2_Missense_Mutation_p.P68S	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	444	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		GGTGGAAGCTCCCAAGCTTAA	0.463													4	33					0	0	0.000602	0	0
TEX15	56154	broad.mit.edu	37	8	30703356	30703356	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:30703356T>C	uc003xil.2	-	1	3178	c.3178A>G	c.(3178-3180)ACT>GCT	p.T1060A		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	1060										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		AAATGCTTAGTAGAATAATAT	0.328													15	43					0	0	0.003163	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38194888	38194889	+	Missense_Mutation	DNP	GG	AA	AA	rs74585221		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:38194888_38194889GG>AA	uc003xli.2	-	4	1362_1363	c.844_845CC>TT	c.(844-846)CCT>TTT	p.P282F	WHSC1L1_uc011lbm.1_Missense_Mutation_p.P282F|WHSC1L1_uc010lwe.2_Missense_Mutation_p.P282F|WHSC1L1_uc003xlj.2_Missense_Mutation_p.P282F	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	282	PWWP 1.				cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			AGGCCACCAAGGATAGGTTCCC	0.431			T	NUP98	AML								8	35					0	0	0.004672	0	0
ADAM2	2515	broad.mit.edu	37	8	39624517	39624517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:39624517C>T	uc003xnj.2	-	14	1432	c.1357G>A	c.(1357-1359)GAC>AAC	p.D453N	ADAM2_uc003xnk.2_Missense_Mutation_p.D434N|ADAM2_uc011lck.1_Missense_Mutation_p.D453N|ADAM2_uc003xnl.2_Missense_Mutation_p.D327N	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	453	Extracellular (Potential).|Disintegrin.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TCAGGGAGGTCGCATTCTTCA	0.398													6	76					0	0	0.001984	0	0
RP1	6101	broad.mit.edu	37	8	55534734	55534734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:55534734G>A	uc003xsd.1	+	3	821	c.673G>A	c.(673-675)GAG>AAG	p.E225K	RP1_uc011ldy.1_Missense_Mutation_p.E225K	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	225	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGCAGGAAGGGAGCCATTTAA	0.483													9	24					0	0	0.000443	0	0
HNF4G	3174	broad.mit.edu	37	8	76472605	76472605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:76472605C>T	uc003yaq.2	+	10	1279	c.1009C>T	c.(1009-1011)CAT>TAT	p.H337Y	HNF4G_uc003yar.2_Missense_Mutation_p.H374Y	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	337					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			CAGTCATCTCCATCATCCAAT	0.388													5	15					0	0	0.000602	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766741	77766741	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:77766741C>T	uc003yav.2	+	10	7836	c.7449C>T	c.(7447-7449)TTC>TTT	p.F2483F	ZFHX4_uc003yau.1_Silent_p.F2528F|ZFHX4_uc003yaw.1_Silent_p.F2483F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2483						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACTCTCCGTTCTTGGAAAGGC	0.517										HNSCC(33;0.089)			12	84					0	0	0.000978	0	0
CNGB3	54714	broad.mit.edu	37	8	87738864	87738864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:87738864G>A	uc003ydx.2	-	3	279	c.233C>T	c.(232-234)TCC>TTC	p.S78F		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	78	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATCTCCAGAGGAATTTTTCTT	0.428													17	209					0	0	0.000958	0	0
RGS22	26166	broad.mit.edu	37	8	101016257	101016257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:101016257C>T	uc003yjb.1	-	17	2719	c.2524G>A	c.(2524-2526)GAT>AAT	p.D842N	RGS22_uc003yja.1_Missense_Mutation_p.D661N|RGS22_uc003yjc.1_Missense_Mutation_p.D830N|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	842					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GGAACATTATCCCAATATTCT	0.358													5	32					0	0	0.001168	0	0
ZFPM2	23414	broad.mit.edu	37	8	106573624	106573624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:106573624G>A	uc003ymd.2	+	4	358	c.335G>A	c.(334-336)CGA>CAA	p.R112Q		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	112					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GATGGGGAACGAAAAATTCAG	0.438													5	22					0	0	0.000602	0	0
TRHR	7201	broad.mit.edu	37	8	110099745	110099745	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:110099745G>A	uc003ymz.3	+	1	20	c.4G>A	c.(4-6)GAA>AAA	p.E2K		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	2	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TCTAAAGATGGAAAACGAGAC	0.458													4	24					0	0	0.000248	0	0
ENPP2	5168	broad.mit.edu	37	8	120620200	120620200	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:120620200G>A	uc003yot.1	-	9	881	c.795C>T	c.(793-795)ACC>ACT	p.T265T	ENPP2_uc003yos.1_Silent_p.T265T|ENPP2_uc010mdd.1_Silent_p.T265T	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	265					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CCCCTTGCTTGGTGGCTGTAA	0.318													4	18					0	0	0.000602	0	0
WDR67	93594	broad.mit.edu	37	8	124140586	124140586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:124140586G>A	uc003ypp.1	+	14	2040	c.1950G>A	c.(1948-1950)ATG>ATA	p.M650I	WDR67_uc011lig.1_Missense_Mutation_p.M650I|WDR67_uc011lih.1_Missense_Mutation_p.M540I|WDR67_uc003ypq.1_RNA|WDR67_uc003yps.1_Intron|WDR67_uc003ypt.1_Missense_Mutation_p.M107I|WDR67_uc003ypu.1_Missense_Mutation_p.M107I	NM_145647	NP_663622	Q96DN5	WDR67_HUMAN	WD repeat domain 67 isoform 1	650						centrosome	Rab GTPase activator activity			skin(1)	1	Lung NSC(37;7e-10)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			ATCATCTCATGGAGACCACGC	0.348													18	52					0	0	0.001216	0	0
MTSS1	9788	broad.mit.edu	37	8	125716371	125716371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:125716371C>T	uc003yrk.2	-	2	668	c.134G>A	c.(133-135)CGG>CAG	p.R45Q	MTSS1_uc003yrj.2_Missense_Mutation_p.R45Q|MTSS1_uc003yrl.2_Missense_Mutation_p.R45Q	NM_014751	NP_055566	O43312	MTSS1_HUMAN	metastasis suppressor 1	45	IMD.				actin cytoskeleton organization|cell adhesion|cellular component movement|filopodium assembly|transmembrane receptor protein tyrosine kinase signaling pathway	actin cytoskeleton|endocytic vesicle|ruffle	actin monomer binding|cytoskeletal adaptor activity|receptor binding|SH3 domain binding			ovary(1)	1	Ovarian(258;0.00438)|all_neural(195;0.00459)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			TTCTACTTACCGAAGCTGGGA	0.448													12	61					0	0	0.000978	0	0
JRK	8629	broad.mit.edu	37	8	143747283	143747283	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:143747283G>A	uc003ywo.2	-	2	709	c.195C>T	c.(193-195)TTC>TTT	p.F65F	JRK_uc003ywp.2_Silent_p.F65F|JRK_uc010mew.1_Silent_p.F65F	NM_001077527	NP_001070995			jerky isoform b												0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;2.31e-05)				agctggcgaagaaccggagca	0													6	12					0	0	0.001984	0	0
ZC3H3	23144	broad.mit.edu	37	8	144621039	144621039	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:144621039G>A	uc003yyd.2	-	2	527	c.498C>T	c.(496-498)CCC>CCT	p.P166P		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	166					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			GTCCCCGAGGGGGCTCACCTT	0.632													6	20					0	0	0.001984	0	0
HSF1	3297	broad.mit.edu	37	8	145533467	145533467	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:145533467C>T	uc003zbt.3	+	4	543	c.373C>T	c.(373-375)CTG>TTG	p.L125L	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	125						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			GGTGTCCACCCTGAAGAGTGA	0.597													9	55					0	0	0.004482	0	0
TYRP1	7306	broad.mit.edu	37	9	12695539	12695539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr9:12695539G>A	uc003zkv.3	+	3	588	c.410G>A	c.(409-411)AGT>AAT	p.S137N		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	137	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		CTGGACTTAAGTAAAGAAGAA	0.428									Oculocutaneous_Albinism				5	29					0	0	0.003080	0	0
FRMPD1	22844	broad.mit.edu	37	9	37707446	37707446	+	Silent	SNP	G	A	A	rs112589819		TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr9:37707446G>A	uc004aag.1	+	3	179	c.135G>A	c.(133-135)AGG>AGA	p.R45R	FRMPD1_uc004aah.1_Silent_p.R45R	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	45						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GGCCCGCCAGGAACCCAACTC	0.498													17	31					0	0	0.001882	0	0
RG9MTD3	158234	broad.mit.edu	37	9	37777689	37777689	+	Silent	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr9:37777689G>A	uc004aai.2	+	9	1013	c.936G>A	c.(934-936)CGG>CGA	p.R312R	RG9MTD3_uc011lqo.1_Silent_p.R252R|RG9MTD3_uc011lqp.1_Silent_p.R225R|RG9MTD3_uc011lqq.1_Silent_p.R192R|RG9MTD3_uc004aaj.2_RNA|RG9MTD3_uc004aak.2_Silent_p.R217R	NM_144964	NP_659401	Q6PF06	RG9D3_HUMAN	RNA (guanine-9-) methyltransferase domain	312							methyltransferase activity				0				GBM - Glioblastoma multiforme(29;0.00817)|Lung(182;0.226)		ATATTCTTCGGAACTCAGTGG	0.333													6	34					0	0	0.001984	0	0
DNAJC25	548645	broad.mit.edu	37	9	114411966	114411966	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr9:114411966C>T	uc004bfl.2	+	3	779	c.723C>T	c.(721-723)ATC>ATT	p.I241I	DNAJC25-GNG10_uc004bfn.2_Intron|DNAJC25_uc004bfm.2_Silent_p.I119I	NM_001015882	NP_001015882	Q9H1X3	DJC25_HUMAN	DnaJ (Hsp40) homolog, subfamily C , member 25	241					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						AACCCCAAATCTGTGATCTTC	0.343													13	24					0	0	0.002450	0	0
CSF2RA	1438	broad.mit.edu	37	X	1407689	1407689	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:1407689C>T	uc010nct.2	+	7	703	c.381C>T	c.(379-381)TTC>TTT	p.F127F	CSF2RA_uc011mhb.1_Silent_p.F127F|CSF2RA_uc004cpq.2_Silent_p.F127F|CSF2RA_uc004cpn.2_Silent_p.F127F|CSF2RA_uc004cpo.2_Silent_p.F127F|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_5'UTR|CSF2RA_uc004cpp.2_Silent_p.F127F|CSF2RA_uc010ncv.2_Silent_p.F127F|CSF2RA_uc004cpr.2_Silent_p.F127F	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	127	Extracellular (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TCTCCTGTTTCATCTACAATG	0.463													13	158					0	0	0.003163	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736019	12736019	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:12736019G>C	uc004cuz.1	+	16	3580	c.3074G>C	c.(3073-3075)AGC>ACC	p.S1025T	FRMPD4_uc011mij.1_Missense_Mutation_p.S1017T	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1025					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TCCTGCACTAGCAAAAGGAAA	0.512													4	49					0	0	0.000602	0	0
PHEX	5251	broad.mit.edu	37	X	22117214	22117214	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:22117214C>G	uc004dah.2	+	9	1227	c.1024C>G	c.(1024-1026)CGC>GGC	p.R342G	PHEX_uc011mjr.1_Missense_Mutation_p.R342G|PHEX_uc011mjs.1_Missense_Mutation_p.R245G	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	342	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TGTGGTGGTCCGCGTCCCGCA	0.453													8	40					0	0	0.004482	0	0
CCNB3	85417	broad.mit.edu	37	X	50085299	50085299	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:50085299C>T	uc004dox.3	+	9	3913	c.3615C>T	c.(3613-3615)CTC>CTT	p.L1205L	CCNB3_uc004doy.2_Silent_p.L1205L|CCNB3_uc004doz.2_Silent_p.L101L|CCNB3_uc010njq.2_Silent_p.L97L|CCNB3_uc004dpa.2_Silent_p.L44L	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1205					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					AGTTACAACTCCTTGGTGCCA	0.463													8	22					0	0	0.003080	0	0
BRWD3	254065	broad.mit.edu	37	X	79945479	79945479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:79945479G>A	uc004edt.2	-	32	3978	c.3715C>T	c.(3715-3717)CTT>TTT	p.L1239F	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.L835F|BRWD3_uc004edp.2_Missense_Mutation_p.L1068F|BRWD3_uc004edq.2_Missense_Mutation_p.L835F|BRWD3_uc010nmj.1_Missense_Mutation_p.L835F|BRWD3_uc004edr.2_Missense_Mutation_p.L909F|BRWD3_uc004eds.2_Missense_Mutation_p.L835F|BRWD3_uc004edu.2_Missense_Mutation_p.L909F|BRWD3_uc004edv.2_Missense_Mutation_p.L835F|BRWD3_uc004edw.2_Missense_Mutation_p.L835F|BRWD3_uc004edx.2_Missense_Mutation_p.L835F|BRWD3_uc004edy.2_Missense_Mutation_p.L835F|BRWD3_uc004edz.2_Missense_Mutation_p.L909F|BRWD3_uc004eea.2_Missense_Mutation_p.L909F|BRWD3_uc004eeb.2_Missense_Mutation_p.L835F	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1239										ovary(4)	4						ATAAATCGAAGTAAGACATCA	0.289													4	6					0	0	0.001168	0	0
DRP2	1821	broad.mit.edu	37	X	100497922	100497922	+	Silent	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:100497922C>T	uc004egz.2	+	9	1374	c.1005C>T	c.(1003-1005)CTC>CTT	p.L335L	DRP2_uc011mrh.1_Silent_p.L257L	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	335	Spectrin 2.				central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						TTAAGCAGCTCCAGGATGCCC	0.532													13	21					0	0	0.002450	0	0
MCF2	4168	broad.mit.edu	37	X	138669924	138669924	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:138669924G>A	uc004fau.2	-	22	2767	c.2473C>T	c.(2473-2475)CAA>TAA	p.Q825*	MCF2_uc004fav.2_Nonsense_Mutation_p.Q841*|MCF2_uc011mwl.1_Nonsense_Mutation_p.Q802*|MCF2_uc010nsh.1_Nonsense_Mutation_p.Q825*|MCF2_uc011mwm.1_Nonsense_Mutation_p.Q786*|MCF2_uc011mwn.1_Nonsense_Mutation_p.Q970*|MCF2_uc004faw.2_Nonsense_Mutation_p.Q885*|MCF2_uc011mwo.1_Nonsense_Mutation_p.Q901*	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	825					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TCTGTTAATTGATCCTGTTGC	0.333													21	42					0	0	0.002299	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092512	151092512	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:151092512C>T	uc004fez.2	+	3	532	c.376C>T	c.(376-378)CGA>TGA	p.R126*	MAGEA4_uc004ffa.2_Nonsense_Mutation_p.R126*|MAGEA4_uc004ffb.2_Nonsense_Mutation_p.R126*|MAGEA4_uc004ffc.2_Nonsense_Mutation_p.R126*|MAGEA4_uc004ffd.2_Nonsense_Mutation_p.R126*	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	126	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCGCAAGTATCGAGCCAAGGA	0.527													11	25					0	0	0.000978	0	0
GAB3	139716	broad.mit.edu	37	X	153925439	153925439	+	Silent	SNP	A	G	G			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:153925439A>G	uc004fmj.1	-	7	1440	c.1392T>C	c.(1390-1392)CAT>CAC	p.H464H	GAB3_uc004fmk.1_Silent_p.H465H|GAB3_uc010nve.1_Silent_p.H465H|GAB3_uc004fml.1_Silent_p.H84H	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	464										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TAAGAGATGCATGTTCCCGGA	0.532													18	25					0	0	0.001216	0	0
EPPK1	83481	broad.mit.edu	37	8	144943831	144943831	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chr8:144943831delG	uc003zaa.1	-	1	3604	c.3591delC	c.(3589-3591)CCCfs	p.P1197fs		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1197						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCCGTGGGCCGGGCACCATGA	0.682													2	4	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76874353	76874354	+	Frame_Shift_Ins	INS	-	CACA	CACA			TCGA-EE-A2GE-06A-11D-A196-08	TCGA-EE-A2GE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3c7b2727-77fe-4ff3-94fd-dae0e7892f5d	40c69184-17d3-4e93-a706-f8e2cc4c6e45	g.chrX:76874353_76874354insCACA	uc004ecp.3	-	21	5600_5601	c.5368_5369insTGTG	c.(5368-5370)GCAfs	p.A1790fs	ATRX_uc004ecq.3_Frame_Shift_Ins_p.A1752fs|ATRX_uc004eco.3_Frame_Shift_Ins_p.A1575fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1790					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GGTAGAATCTGCACACTGACCA	0.342			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						18	53	---	---	---	---					
