Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16945409	16945409	+	RNA	SNP	T	A	A	rs13566		TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:16945409T>A	uc010ocf.1	-	4		c.748A>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCGGGATAGCTCGGTGGAGAG	0.612000													7	56					0	0	8.12818e-05	0	0
MST1P9	11223	broad.mit.edu	37	1	17084510	17084510	+	Silent	SNP	G	A	A	rs61769731	by1000genomes	TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:17084510G>A	uc010ock.1	-	12	1588	c.1588C>T	c.(1588-1590)CTA>TTA	p.L530L	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.L130L	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ACCCGCTGTAGGCCTGGCTCT	0.577000													10	82					0	0	3.86212e-05	0	0
CLCC1	23155	broad.mit.edu	37	1	109482692	109482693	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:109482692_109482693GG>TT	uc001dwe.1	-	8	960_961	c.868_869CC>AA	c.(868-870)CCT>AAT	p.P290N	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.P290N|CLCC1_uc001dwg.1_Missense_Mutation_p.P240N|CLCC1_uc009wes.1_Missense_Mutation_p.P169N|CLCC1_uc009wet.1_Intron	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	290						endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		CAACCAAATAGGGTTGACTAGT	0.342000													13	528					0	0	6.4e-05	0	0
FAM46C	54855	broad.mit.edu	37	1	118165599	118165599	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:118165599G>C	uc001ehe.2	+	2	308	c.109G>C	c.(109-111)GGA>CGA	p.G37R		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	37											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		ACCTATCCACGGACGAGGCAA	0.567000										Multiple Myeloma(3;1.13e-06)			3	35					0	0	0.00024832	0	0
NBPF9	400818	broad.mit.edu	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:144828683C>G	uc009wig.1	+	23	2804	c.2728C>G	c.(2728-2730)CAG>GAG	p.Q910E	NBPF9_uc010oxn.1_Missense_Mutation_p.Q808E|NBPF9_uc010oxo.1_Missense_Mutation_p.Q835E|NBPF9_uc010oxr.1_Missense_Mutation_p.Q937E|NBPF9_uc010oxt.1_Missense_Mutation_p.Q725E|NBPF9_uc001ekg.1_Missense_Mutation_p.Q237E|NBPF9_uc001ekk.1_Missense_Mutation_p.Q481E|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.Q237E|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Q570E|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	910	NBPF 7.					cytoplasm					0						ATTTGAGGAACAGCACATCAG	0.438000													35	50					0	0	0.000109025	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433000													35	49					0	0	0.000132358	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315538	30315539	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr10:30315538_30315539CC>AA	uc001iux.2	-	2	3597_3598	c.3538_3539GG>TT	c.(3538-3540)GGG>TTG	p.G1180L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G1042L|KIAA1462_uc009xle.1_Missense_Mutation_p.G1180L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1180										ovary(4)	4						GGTGACAACCCCGTCCACATCT	0.584000													8	195					0	0	6.4e-05	0	0
CIT	11113	broad.mit.edu	37	12	120156512	120156513	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr12:120156512_120156513CG>AT	uc001txi.1	-	30	3921_3922	c.3868_3869CG>AT	c.(3868-3870)CGG>ATG	p.R1290M	CIT_uc001txh.1_Missense_Mutation_p.R809M|CIT_uc001txj.1_Missense_Mutation_p.R1332M	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	1290	Potential.|Interaction with Rho/Rac.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		ACCTTCCTCCCGGGCGGACCGG	0.550000													7	191					0	0	6.4e-05	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205094	23205094	+	RNA	SNP	G	A	A			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr15:23205094G>A	uc001yvg.2	-	2		c.701C>T			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						AGTACTGGAAGAACGTGGTTG	0.373000													4	23					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	15	102294648	102294648	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr15:102294648T>C	uc010usj.1	+	5	535	c.476T>C	c.(475-477)CTG>CCG	p.L159P	uc002bxo.2_5'Flank|uc002bxq.2_5'Flank|uc002bxr.2_5'Flank|uc010usk.1_5'Flank|uc002bxs.2_5'Flank|uc002bxu.1_5'Flank|uc002bxv.1_5'Flank|uc002bxw.1_5'Flank|uc002bxy.1_5'Flank|uc002byb.1_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank|uc002bys.2_5'Flank|uc002byv.2_5'Flank|uc002byx.3_5'Flank|uc002bza.2_5'Flank|uc002bzb.2_5'Flank|uc002bzc.1_5'Flank|uc002bzd.2_5'Flank|uc002bze.2_5'Flank|uc002bzg.2_5'Flank|uc002bzi.1_5'Flank|uc002bzj.2_5'Flank|uc002bzl.2_5'Flank|uc002bzm.2_5'Flank|uc002bzo.2_5'Flank|uc002bzp.2_5'Flank|uc002bzq.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		TTCTCAGAGCTGCTGTCCAAC	0.587000													3	28					0	0	1.23904e-05	0	0
HIRIP3	8479	broad.mit.edu	37	16	30005857	30005858	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr16:30005857_30005858GG>TT	uc002dve.2	-	4	1069_1070	c.608_609CC>AA	c.(607-609)CCC>CAA	p.P203Q	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|INO80E_uc002dvg.1_5'Flank|INO80E_uc002dvh.1_5'Flank|INO80E_uc002dvi.1_5'Flank|INO80E_uc002dvj.1_5'Flank|INO80E_uc002dvk.1_5'Flank|HIRIP3_uc002dvf.2_Intron	NM_003609	NP_003600	Q9BW71	HIRP3_HUMAN	HIRA interacting protein 3	203	Glu-rich.				chromatin assembly or disassembly	nucleus	protein binding			central_nervous_system(1)	1						TCCTCTGAACGGGTTCTGCCTC	0.505000													10	365					0	0	6.4e-05	0	0
POTEC	388468	broad.mit.edu	37	18	14543019	14543019	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr18:14543019T>C	uc010dln.2	-	1	581	c.127A>G	c.(127-129)ATG>GTG	p.M43V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	43										skin(3)	3						GAAGTGCCCATGTTGCTCTTG	0.587000													8	164					0	0	1.12685e-05	0	0
LMAN1	3998	broad.mit.edu	37	18	57022737	57022737	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr18:57022737A>G	uc002lhz.2	-	2	400	c.368T>C	c.(367-369)CTA>CCA	p.L123P	LMAN1_uc010xek.1_Missense_Mutation_p.L123P	NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	123	Lumenal (Potential).|L-type lectin-like.				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	TGATCATACTAGGCCATCAGC	0.418000													3	81					0	0	6.4e-05	0	0
PSG1	5669	broad.mit.edu	37	19	43382154	43382155	+	Missense_Mutation	DNP	CG	AT	AT	rs142473373		TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr19:43382154_43382155CG>AT	uc002ovb.2	-	2	478_479	c.340_341CG>AT	c.(340-342)CGG>ATG	p.R114M	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.R114M|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.R114M|PSG1_uc010eio.1_Missense_Mutation_p.R114M|PSG1_uc002oux.1_Missense_Mutation_p.R43M|PSG1_uc002ouy.1_Missense_Mutation_p.R114M|PSG1_uc002ouz.1_Missense_Mutation_p.R114M|PSG1_uc002ova.1_Missense_Mutation_p.R114M|PSG1_uc002ovc.2_Missense_Mutation_p.R114M|PSG1_uc002ovd.1_Missense_Mutation_p.R114M	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	114	Ig-like V-type.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TGCGTCCTCCCGGGTGACATTC	0.450000													12	383					0	0	6.4e-05	0	0
TGOLN2	10618	broad.mit.edu	37	2	85554402	85554403	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr2:85554402_85554403GG>TT	uc010fgd.1	-	2	741_742	c.452_453CC>AA	c.(451-453)CCC>CAA	p.P151Q	TGOLN2_uc002soz.2_Missense_Mutation_p.P151Q|TGOLN2_uc002spa.2_Intron|TGOLN2_uc002spb.2_Missense_Mutation_p.P151Q|TGOLN2_uc002spc.1_Missense_Mutation_p.P151Q	NM_006464	NP_006455	O43493	TGON2_HUMAN	trans-golgi network protein 2	151	Extracellular (Potential).|7.|14 X 14 AA tandem repeats.					integral to membrane|nucleus|plasma membrane|trans-Golgi network|transport vesicle	protein binding				0						CCGACCTGTTGGGGCTGTCTTC	0.569000													13	583					0	0	6.4e-05	0	0
FAM113A	64773	broad.mit.edu	37	20	2819055	2819055	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr20:2819055C>G	uc002wgz.1	-	6	1161	c.664G>C	c.(664-666)GGG>CGG	p.G222R	FAM113A_uc002whb.1_Missense_Mutation_p.G73R|FAM113A_uc002wha.1_Missense_Mutation_p.G73R|FAM113A_uc010zqa.1_Missense_Mutation_p.G69R|FAM113A_uc002whc.1_Missense_Mutation_p.G171R|VPS16_uc002whe.2_5'Flank|VPS16_uc002whf.2_5'Flank|VPS16_uc002whd.2_5'Flank	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	222							hydrolase activity|protein binding			ovary(2)	2						CAGTGGTCCCCGGCCAGCGTA	0.592000													3	85					0	0	0.00024832	0	0
FRG1B	284802	broad.mit.edu	37	20	29628225	29628225	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr20:29628225A>G	uc010ztl.1	+	3	171	c.139_splice	c.e3-2	p.G47_splice	FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site|FRG1B_uc010ztk.1_Splice_Site					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TGTTTCACTTAGGGGAAAATG	0.318000													4	45					0	0	0.00024832	0	0
MLL3	58508	broad.mit.edu	37	7	151919130	151919130	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr7:151919130T>C	uc003wla.2	-	22	3674	c.3455A>G	c.(3454-3456)GAA>GGA	p.E1152G	MLL3_uc003wkz.2_Missense_Mutation_p.E213G	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1152					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AAGTGAAGATTCACAGCAGTC	0.269000			N		medulloblastoma								3	69					0	0	6.4e-05	0	0
XIST	7503	broad.mit.edu	37	X	73065231	73065231	+	RNA	SNP	T	C	C			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chrX:73065231T>C	uc004ebm.1	-	1		c.7358A>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TGTGCAGTTATGCACATTCAT	0.498000													3	89					0	0	6.4e-05	0	0
FMR1NB	158521	broad.mit.edu	37	X	147063198	147063199	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chrX:147063198_147063199CG>AT	uc004fcm.2	+	1	350_351	c.276_277CG>AT	c.(274-279)TCCGGG>TCATGG	p.G93W		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	93	Extracellular (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACCTGTGCTCCGGTGAGTGCTG	0.485000													6	234					0	0	6.4e-05	0	0
KIAA0907	22889	broad.mit.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr1:155886422_155886423delCT	uc001fmi.1	-	12	1570_1571	c.1546_1547delAG	c.(1546-1548)AGGfs	p.R516fs	KIAA0907_uc001fmj.1_Frame_Shift_Del_p.R516fs|KIAA0907_uc009wrk.1_Frame_Shift_Del_p.R373fs|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	516											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TTACCTGTCCCTCTCTCTCTCT	0.396													7	361	---	---	---	---					
HNF1A	6927	broad.mit.edu	37	12	121432115	121432115	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr12:121432115delG	uc001tzg.2	+	4	885	c.862delG	c.(862-864)GGGfs	p.G288fs	HNF1A_uc001tze.1_Frame_Shift_Del_p.G288fs|HNF1A_uc001tzf.2_Frame_Shift_Del_p.G288fs|HNF1A_uc010szn.1_Frame_Shift_Del_p.G288fs	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	288					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CACGTACAGCGGGCCCCCCCC	0.672									Hepatic_Adenoma_Familial_Clustering_of				10	272	---	---	---	---					
CHD9	80205	broad.mit.edu	37	16	53191095	53191095	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr16:53191095delT	uc002ehb.2	+	1	1258	c.1094delT	c.(1093-1095)GTTfs	p.V365fs	CHD9_uc002egy.2_Frame_Shift_Del_p.V365fs|CHD9_uc002egz.1_Frame_Shift_Del_p.V365fs|CHD9_uc002eha.1_Frame_Shift_Del_p.V365fs|CHD9_uc002ehc.2_Frame_Shift_Del_p.V365fs	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	365					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CCAGATCCTGTTGACTCAGGA	0.343													2	4	---	---	---	---					
TTN	7273	broad.mit.edu	37	2	179588388	179588388	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr2:179588388delC	uc010zfg.1	-	71	17931	c.17707delG	c.(17707-17709)GAAfs	p.E5903fs	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Frame_Shift_Del_p.E2564fs	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6830							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGTAGTACTTCCAAAGGTTCA	0.403													2	4	---	---	---	---					
TRERF1	55809	broad.mit.edu	37	6	42196333	42196333	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr6:42196333delT	uc003osd.2	-	18	3916	c.3353delA	c.(3352-3354)AAGfs	p.K1118fs	TRERF1_uc011duq.1_Frame_Shift_Del_p.K1035fs|TRERF1_uc003osb.2_Frame_Shift_Del_p.K886fs|TRERF1_uc003osc.2_Frame_Shift_Del_p.K874fs|TRERF1_uc003ose.2_Frame_Shift_Del_p.K1138fs	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1118	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTTCTGAGCCTTTTGCCTCTG	0.542													7	827	---	---	---	---					
FAM22F	54754	broad.mit.edu	37	9	97080945	97080947	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EE-A2GK-06A-11D-A196-08	TCGA-EE-A2GK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	9d39d79f-ebea-463b-af46-7a59ef21ed1f	76a32d10-71f6-444c-93de-e96ae7e4ffdb	g.chr9:97080945_97080947delAGA	uc004aup.1	-	7	2092_2094	c.2071_2073delTCT	c.(2071-2073)TCTdel	p.S691del		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	691				Missing (in Ref. 2; AAI30391 and 3; CAB61394).							0		Acute lymphoblastic leukemia(62;0.136)				TGCTGGCAGGAGAAGGTGATGGG	0.611													6	5	---	---	---	---					
