Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
B3GALT6	126792	broad.mit.edu	37	1	1168182	1168182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:1168182C>T	uc001adk.2	+	1	554	c.524C>T	c.(523-525)CCC>CTC	p.P175L	SDF4_uc001adh.3_5'Flank|SDF4_uc001adi.3_5'Flank|SDF4_uc009vjv.2_5'Flank|SDF4_uc009vjw.2_5'Flank	NM_080605	NP_542172	Q96L58	B3GT6_HUMAN	beta-1,3-galactosyltransferase 6	175	Lumenal (Potential).				glycosaminoglycan biosynthetic process|protein glycosylation	Golgi cisterna membrane|Golgi medial cisterna|integral to membrane	galactosylxylosylprotein 3-beta-galactosyltransferase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.22e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		gcccgcgagcccgcgcgccgc	0.597													4	16					0	0	0.001168	0	0
TP73	7161	broad.mit.edu	37	1	3624233	3624233	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:3624233A>G	uc001akp.2	+	4	417	c.307A>G	c.(307-309)AGC>GGC	p.S103G	TP73_uc001akq.2_Missense_Mutation_p.S103G|TP73_uc010nzj.1_Missense_Mutation_p.S54G|TP73_uc001akr.2_Missense_Mutation_p.S54G|TP73_uc009vlk.1_Missense_Mutation_p.S54G|TP73_uc001aks.2_Missense_Mutation_p.S54G|TP73_uc009vll.2_Missense_Mutation_p.S32G|TP73_uc010nzk.1_Missense_Mutation_p.S32G	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	103					cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		CGCACAACCCAGCTCCACCTT	0.672													12	103					0	0	0.001855	0	0
CA6	765	broad.mit.edu	37	1	9019055	9019055	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:9019055C>T	uc001apm.2	+	4	519	c.495C>T	c.(493-495)TTC>TTT	p.F165F	CA6_uc009vmn.2_Silent_p.F105F	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	165					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding	p.F165F(1)		ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCAGCCTTCGTTGAGGTAA	0.408													24	106					0	0	0.003330	0	0
CASZ1	54897	broad.mit.edu	37	1	10707917	10707917	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:10707917C>T	uc001aro.2	-	16	3758	c.3438G>A	c.(3436-3438)ACG>ACA	p.T1146T	CASZ1_uc001arp.1_Silent_p.T1146T	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CTAGAGAAGTCGTTGCCAAGG	0.642													12	146					0	0	0.001855	0	0
VPS13D	55187	broad.mit.edu	37	1	12416123	12416123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:12416123C>T	uc001atv.2	+	48	9988	c.9847C>T	c.(9847-9849)CCA>TCA	p.P3283S	VPS13D_uc001atw.2_Missense_Mutation_p.P3258S|VPS13D_uc001atx.2_Missense_Mutation_p.P2470S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3282					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CATTTCTGCTCCATATTGGCT	0.448													5	47					0	0	0.001984	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954433	12954433	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:12954433G>A	uc001auo.2	-	3	923	c.850C>T	c.(850-852)CTG>TTG	p.L284L		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	284											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGGTGCTCCAGGTGCTCTTTG	0.393													11	67					0	0	0.006122	0	0
PADI4	23569	broad.mit.edu	37	1	17657608	17657608	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:17657608G>A	uc001baj.2	+	2	265	c.237G>A	c.(235-237)ACG>ACA	p.T79T	PADI4_uc009vpc.2_Silent_p.T79T	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	79					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	TGACCCTGACGATGAAAGTGG	0.602													4	43					0	0	0.000248	0	0
ALDH4A1	8659	broad.mit.edu	37	1	19200962	19200962	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:19200962G>C	uc001bbb.2	-	14	1850	c.1574C>G	c.(1573-1575)GCC>GGC	p.A525G	ALDH4A1_uc010ocu.1_Missense_Mutation_p.A465G|ALDH4A1_uc001bbc.2_Missense_Mutation_p.A525G	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	525				RAS -> GSA (in Ref. 9; AA sequence).	proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	CTCACCAGAGGCTCGGGCCCC	0.567													19	97					0	0	0.001523	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20474840	20474841	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:20474840_20474841CC>TT	uc009vpp.1	+	5	680_681	c.582_583CC>TT	c.(580-585)CCCCCT>CCTTCT	p.P195S		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	152					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		ATGAACCGCCCCCTGAGGAGGT	0.624													14	96					0	0	0.004672	0	0
ECE1	1889	broad.mit.edu	37	1	21605716	21605716	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:21605716C>A	uc001bek.2	-	3	323	c.248G>T	c.(247-249)TGC>TTC	p.C83F	ECE1_uc001bem.2_Missense_Mutation_p.C67F|ECE1_uc001bej.2_Missense_Mutation_p.C71F|ECE1_uc001bei.2_Missense_Mutation_p.C80F|ECE1_uc010odl.1_Missense_Mutation_p.C83F|ECE1_uc009vqa.1_Missense_Mutation_p.C83F|uc001ben.1_5'Flank	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	83	Helical; Signal-anchor for type II membrane protein; (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		TGCTGCCAAGCAGGCCACCAG	0.652													13	94					9.31168e-06	1.29017e-05	0.001855	1	0
ZBTB40	9923	broad.mit.edu	37	1	22837755	22837755	+	Silent	SNP	G	A	A	rs140676819	byFrequency	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:22837755G>A	uc001bft.2	+	11	2428	c.1917G>A	c.(1915-1917)CCG>CCA	p.P639P	ZBTB40_uc001bfu.2_Silent_p.P639P|ZBTB40_uc009vqi.1_Silent_p.P527P|ZBTB40_uc001bfv.1_Silent_p.P268P	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	639					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		AATCAGTCCCGGCCATTGAAA	0.517													10	42					0	0	0.006214	0	0
FGR	2268	broad.mit.edu	37	1	27943740	27943740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:27943740C>T	uc001boj.2	-	4	642	c.496G>A	c.(496-498)GGG>AGG	p.G166R	FGR_uc001boi.2_5'Flank|FGR_uc001bok.2_Missense_Mutation_p.G166R|FGR_uc001bol.2_Missense_Mutation_p.G166R|FGR_uc001bom.2_Missense_Mutation_p.G166R	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	166	SH2.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		AGAAAGGCCCCCTGGGGGTTG	0.602													14	95					0	0	0.002450	0	0
HCRTR1	3061	broad.mit.edu	37	1	32084967	32084967	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:32084967C>T	uc009vtx.2	+	3	559	c.174C>T	c.(172-174)GTC>GTT	p.V58V	HCRTR1_uc001btb.2_Intron|HCRTR1_uc001btc.3_Missense_Mutation_p.S32L|HCRTR1_uc001btd.2_Silent_p.V58V|HCRTR1_uc010ogl.1_Silent_p.V58V	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	58	Helical; Name=1; (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		CTGTGTTCGTCGTGGCCCTGG	0.587													14	138					0	0	0.001855	0	0
CSMD2	114784	broad.mit.edu	37	1	34034989	34034989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:34034989C>T	uc001bxn.1	-	53	8151	c.8122G>A	c.(8122-8124)GAA>AAA	p.E2708K	CSMD2_uc001bxm.1_Missense_Mutation_p.E2706K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2708	Sushi 17.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGCGGACTTCAGAGCCACTC	0.527													5	49					0	0	0.000602	0	0
MACF1	23499	broad.mit.edu	37	1	39824448	39824449	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:39824448_39824449CC>TT	uc010oiu.1	+	10	7474_7475	c.7343_7344CC>TT	c.(7342-7344)GCC>GTT	p.A2448V	MACF1_uc010ois.1_Missense_Mutation_p.A1946V|MACF1_uc001cda.1_Missense_Mutation_p.A1854V|MACF1_uc001cdc.1_Missense_Mutation_p.A1033V|MACF1_uc001cdb.1_Missense_Mutation_p.A1033V	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4013	Spectrin 2.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGCCTGCAGGCCTGGATGCAGG	0.5													5	47					0	0	0.004672	0	0
HIVEP3	59269	broad.mit.edu	37	1	42048937	42048937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:42048937G>A	uc001cgz.3	-	4	2745	c.1532C>T	c.(1531-1533)TCC>TTC	p.S511F	HIVEP3_uc001cha.3_Missense_Mutation_p.S511F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	511	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CTCACTGTGGGATGACAGGGG	0.612													11	132					0	0	0.008291	0	0
DPH2	1802	broad.mit.edu	37	1	44437691	44437692	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:44437691_44437692CC>TT	uc001ckz.2	+	4	1312_1313	c.1117_1118CC>TT	c.(1117-1119)CCA>TTA	p.P373L	DPH2_uc001cla.2_Intron|DPH2_uc010okk.1_Missense_Mutation_p.P238L|DPH2_uc001clb.2_Missense_Mutation_p.P297L|ATP6V0B_uc001clc.2_5'Flank|ATP6V0B_uc001cld.2_5'Flank|ATP6V0B_uc001cle.2_5'Flank|ATP6V0B_uc001clf.2_5'Flank	NM_001384	NP_001375	Q9BQC3	DPH2_HUMAN	diphthamide biosynthesis protein 2 isoform a	373					peptidyl-diphthamide biosynthetic process from peptidyl-histidine	cytoplasm				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				CCCTGCCTGGCCACCTCCAGGC	0.599													23	74					0	0	0.004672	0	0
CYP4X1	260293	broad.mit.edu	37	1	47505044	47505044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:47505044G>A	uc001cqt.2	+	8	1163	c.913G>A	c.(913-915)GAT>AAT	p.D305N	CYP4X1_uc001cqr.2_Missense_Mutation_p.D304N|CYP4X1_uc001cqs.2_Missense_Mutation_p.D240N	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	305						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CTCAGATATTGATGTACACTC	0.408													4	18					0	0	0.001168	0	0
C1orf177	163747	broad.mit.edu	37	1	55271814	55271815	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:55271814_55271815GG>AA	uc001cyb.3	+	1	79_80	c.25_26GG>AA	c.(25-27)GGA>AAA	p.G9K	C1orf177_uc001cya.3_Missense_Mutation_p.G9K	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	9											0						GGATGCCGCCGGAGCTCATGGC	0.723													12	12					0	0	0.004672	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169911	57169911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:57169911G>A	uc001cyk.3	+	7	1127	c.1056G>A	c.(1054-1056)ATG>ATA	p.M352I		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	352					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GTTCTTTTATGGATGATAGTG	0.468													18	51					0	0	0.006122	0	0
PRKAA2	5563	broad.mit.edu	37	1	57173220	57173220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:57173220C>T	uc001cyk.3	+	9	1564	c.1493C>T	c.(1492-1494)CCA>CTA	p.P498L		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	498					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TTACACAGACCAAGATCAAGT	0.473													7	68					0	0	0.001984	0	0
KANK4	163782	broad.mit.edu	37	1	62739414	62739414	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:62739414G>A	uc001dah.3	-	3	1739	c.1362C>T	c.(1360-1362)CTC>CTT	p.L454L	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	454										ovary(3)|skin(2)|lung(1)	6						GCCCCCATAGGAGGCCATTCT	0.567													34	190					0	0	0.003271	0	0
PTGFR	5737	broad.mit.edu	37	1	78958820	78958820	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:78958820T>A	uc001din.2	+	2	658	c.392T>A	c.(391-393)ATT>AAT	p.I131N	PTGFR_uc001dim.2_Missense_Mutation_p.I131N	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	131	Helical; Name=3; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GTGATGGCCATTGAGCGGTGT	0.408													16	109					0	0	0.003163	0	0
AMIGO1	57463	broad.mit.edu	37	1	110051031	110051032	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:110051031_110051032GT>AA	uc001dxx.3	-	2	885_886	c.503_504AC>TT	c.(502-504)AAC>ATT	p.N168I		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	168	LRR 5.|Extracellular (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		GAGAGATCTGGTTCTGGCTCAA	0.53													20	232					0	0	0.004672	0	0
AMPD1	270	broad.mit.edu	37	1	115218564	115218564	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:115218564G>A	uc001efe.1	-	11	1533	c.1449C>T	c.(1447-1449)TTC>TTT	p.F483F	AMPD1_uc001eff.1_Silent_p.F479F	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	483					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	ACACTGGCATGAAAATATTCT	0.443													42	101					0	0	0.006999	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			72	157					4.01556e-35	5.63158e-35	0.003610	1	0
SPAG17	200162	broad.mit.edu	37	1	118598527	118598527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:118598527C>T	uc001ehk.2	-	19	2619	c.2551G>A	c.(2551-2553)GAA>AAA	p.E851K		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	851						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GCAACAAGTTCCAAATAATTC	0.318													9	42					0	0	0.000978	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433													45	70					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152188335	152188335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:152188335C>T	uc001ezt.1	-	3	5846	c.5770G>A	c.(5770-5772)GGT>AGT	p.G1924S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1924	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGCTGACCATAGCTGGAA	0.582													44	880					0	0	0.004878	0	0
HRNR	388697	broad.mit.edu	37	1	152188366	152188366	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:152188366G>A	uc001ezt.1	-	3	5815	c.5739C>T	c.(5737-5739)CAC>CAT	p.H1913H		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1913	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGCTAGATCCGTGTTGTTCAC	0.557													35	903					0	0	0.003330	0	0
SPRR1A	6698	broad.mit.edu	37	1	152957746	152957746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:152957746C>T	uc009wnu.1	+	2	118	c.40C>T	c.(40-42)CCT>TCT	p.P14S	SPRR1A_uc001faw.2_Missense_Mutation_p.P14S	NM_005987	NP_005978	P35321	SPR1A_HUMAN	small proline-rich protein 1A	14	1.|2 X 12 AA approximate repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity				0	Lung NSC(65;1.46e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCCCACCCCCTCAGCCTCA	0.517													15	69					0	0	0.004007	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153312963	153312963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:153312963G>A	uc001fbo.2	-	7	783	c.718C>T	c.(718-720)CAC>TAC	p.H240Y	PGLYRP4_uc001fbp.2_Missense_Mutation_p.H236Y	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	240					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCGGCAGTGTGGATAATGATG	0.582													12	25					0	0	0.000978	0	0
ASH1L	55870	broad.mit.edu	37	1	155348300	155348300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:155348300G>A	uc009wqq.2	-	9	6712	c.6232C>T	c.(6232-6234)CGT>TGT	p.R2078C	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.R2073C	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2078					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TCACTTGAACGAATTTTCTTA	0.343													6	35					0	0	0.001168	0	0
CD5L	922	broad.mit.edu	37	1	157803059	157803059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:157803059G>A	uc001frk.3	-	5	1105	c.962C>T	c.(961-963)TCC>TTC	p.S321F		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	321	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTGCTCCAGGGACTGCTCCTC	0.572													7	75					0	0	0.001984	0	0
KIRREL	55243	broad.mit.edu	37	1	158059518	158059518	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:158059518C>T	uc001frn.3	+	10	1586	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	KIRREL_uc010pib.1_Silent_p.I294I|KIRREL_uc009wsq.2_Silent_p.I230I|KIRREL_uc001fro.3_Silent_p.I208I	NM_018240	NP_060710	Q96J84	KIRR1_HUMAN	kin of IRRE like precursor	394	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(112;0.0378)					GGCCCCCCATCATCTCCAGTG	0.597													18	127					0	0	0.001523	0	0
CD1C	911	broad.mit.edu	37	1	158262056	158262056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:158262056G>A	uc001fru.2	+	3	803	c.511G>A	c.(511-513)GAA>AAA	p.E171K	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	171	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TCATCAGTATGAAGGCGTCAC	0.463													16	108					0	0	0.004990	0	0
CD1E	913	broad.mit.edu	37	1	158323802	158323802	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:158323802C>T	uc001fse.2	+	1	263	c.24C>T	c.(22-24)TTC>TTT	p.F8F	CD1E_uc010pid.1_Intron|CD1E_uc010pie.1_Silent_p.F8F|CD1E_uc010pif.1_Silent_p.F8F|CD1E_uc001fsd.2_Silent_p.F8F|CD1E_uc001fsk.2_Silent_p.F8F|CD1E_uc001fsj.2_Silent_p.F8F|CD1E_uc001fsc.2_Silent_p.F8F|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Silent_p.F8F|CD1E_uc001fsf.2_Silent_p.F8F|CD1E_uc001fry.2_Silent_p.F8F|CD1E_uc001fsg.2_Silent_p.F8F|CD1E_uc001fsh.2_Silent_p.F8F|CD1E_uc001fsi.2_Silent_p.F8F|CD1E_uc009wsv.2_Silent_p.F8F|CD1E_uc001frz.2_Silent_p.F8F|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	8					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCCTCCTCTTCGAGGGTCTCT	0.522													7	53					0	0	0.006214	0	0
KCNJ9	3765	broad.mit.edu	37	1	160054080	160054080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:160054080G>A	uc001fuy.1	+	2	502	c.260G>A	c.(259-261)GGC>GAC	p.G87D		NM_004983	NP_004974	Q92806	IRK9_HUMAN	potassium inwardly-rectifying channel subfamily	87	Extracellular (By similarity).				synaptic transmission	integral to membrane|plasma membrane	G-protein activated inward rectifier potassium channel activity|protein binding			ovary(1)|skin(1)	2	all_cancers(52;5.86e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TACGGCCGCGGCGACCTGGAG	0.657													5	49					0	0	0.001168	0	0
BAT2L2	23215	broad.mit.edu	37	1	171553299	171553299	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:171553299C>T	uc010pmg.1	+	29	7874	c.7608C>T	c.(7606-7608)TCC>TCT	p.S2536S	BAT2L2_uc010pmh.1_Silent_p.S1448S|BAT2L2_uc010pmi.1_Silent_p.S373S|BAT2L2_uc010pmj.1_Silent_p.S63S	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	2536	Gln-rich.						protein C-terminus binding				0						TAGGAGGTTCCCAGCTGATTG	0.448													5	39					0	0	0.001168	0	0
TNN	63923	broad.mit.edu	37	1	175048471	175048471	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:175048471C>T	uc001gkl.1	+	3	525	c.412C>T	c.(412-414)CTA>TTA	p.L138L	TNN_uc010pmx.1_Silent_p.L138L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	138					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CCTCCCAGATCTAAGCCGCCA	0.622													4	25					0	0	0.001168	0	0
TDRD5	163589	broad.mit.edu	37	1	179603594	179603594	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:179603594C>T	uc001gnf.1	+	8	1379	c.1129C>T	c.(1129-1131)CAG>TAG	p.Q377*	TDRD5_uc010pnp.1_Nonsense_Mutation_p.Q377*|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	377	Lotus/OST-HTH 3.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GTGTTTAGTTCAGTCAGATAA	0.363													7	48					0	0	0.001984	0	0
TDRD5	163589	broad.mit.edu	37	1	179609005	179609005	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:179609005C>T	uc001gnf.1	+	10	1802	c.1552C>T	c.(1552-1554)CGA>TGA	p.R518*	TDRD5_uc010pnp.1_Nonsense_Mutation_p.R518*|TDRD5_uc001gnh.1_Nonsense_Mutation_p.R73*	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	518					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						GGTTTCTGATCGATATGTCAT	0.383													10	83					0	0	0.000978	0	0
RNASEL	6041	broad.mit.edu	37	1	182554562	182554562	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:182554562A>T	uc001gpj.1	-	1	1547	c.1380T>A	c.(1378-1380)TTT>TTA	p.F460L	RNASEL_uc009wxz.1_Missense_Mutation_p.F460L|RNASEL_uc001gpk.2_Missense_Mutation_p.F460L|RNASEL_uc009wya.1_Missense_Mutation_p.F460L	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	460	Protein kinase.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						CATTTCGGGCAAATTCATCTT	0.463									Hereditary_Prostate_Cancer				7	38					0	0	0.001984	0	0
ATP2B4	493	broad.mit.edu	37	1	203680092	203680092	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:203680092C>T	uc001gzw.2	+	12	2771	c.1887C>T	c.(1885-1887)CCC>CCT	p.P629P	ATP2B4_uc001gzv.2_Silent_p.P629P|ATP2B4_uc009xaq.2_Silent_p.P629P	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	629	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TCATCGAGCCCATGGCCTGTG	0.522													5	12					0	0	0.000602	0	0
LRRN2	10446	broad.mit.edu	37	1	204587262	204587262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:204587262G>A	uc001hbe.1	-	3	2247	c.1859C>T	c.(1858-1860)TCT>TTT	p.S620F	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.S620F|LRRN2_uc009xbf.1_Missense_Mutation_p.S620F|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	620	Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TCTGTGGCAAGAAGTGGCCTC	0.627													12	39					0	0	0.001368	0	0
CAMK1G	57172	broad.mit.edu	37	1	209785234	209785234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:209785234C>T	uc001hhd.2	+	11	1115	c.1013C>T	c.(1012-1014)CCT>CTT	p.P338L	CAMK1G_uc001hhf.3_Missense_Mutation_p.P338L|CAMK1G_uc001hhe.2_Missense_Mutation_p.P338L	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	338						Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		AACAGGCCGCCTGAAACTCAA	0.602													63	109					0	0	0.003610	0	0
CAMK1G	57172	broad.mit.edu	37	1	209785546	209785546	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:209785546A>C	uc001hhd.2	+	11	1427	c.1325A>C	c.(1324-1326)AAG>ACG	p.K442T	CAMK1G_uc001hhf.3_Missense_Mutation_p.K442T|CAMK1G_uc001hhe.2_Missense_Mutation_p.K442T	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	442						Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CTCCTCAAAAAGGCCAACAAA	0.532													12	73					0	0	0.001368	0	0
PTPN14	5784	broad.mit.edu	37	1	214571288	214571288	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:214571288C>T	uc001hkk.1	-	8	997	c.726G>A	c.(724-726)AGG>AGA	p.R242R	PTPN14_uc010pty.1_Silent_p.R143R	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	242	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CAATTCTGTTCCTCACGAAAA	0.303													6	20					0	0	0.001984	0	0
WNT3A	89780	broad.mit.edu	37	1	228238562	228238562	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:228238562G>A	uc001hrq.1	+	3	597	c.519G>A	c.(517-519)CGG>CGA	p.R173R	WNT3A_uc001hrp.1_Silent_p.R173R	NM_033131	NP_149122	P56704	WNT3A_HUMAN	wingless-type MMTV integration site family,	173					axis specification|cell proliferation in forebrain|cell-cell signaling|cellular response to retinoic acid|convergent extension|dermatome development|dorsal/ventral neural tube patterning|embryonic pattern specification|extracellular matrix organization|hemopoietic stem cell proliferation|hippocampus development|inner ear morphogenesis|mammary gland development|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of neuron projection development|notochord development|palate development|paraxial mesodermal cell fate commitment|positive regulation of catenin import into nucleus|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of receptor internalization|positive regulation of transcription from RNA polymerase II promoter|signalosome assembly|tail morphogenesis|Wnt receptor signaling pathway involved in forebrain neuroblast division|Wnt receptor signaling pathway, calcium modulating pathway	cell surface|early endosome|extracellular space|late endosome|membrane raft|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled-2 binding|receptor agonist activity|signal transducer activity|transcription coactivator activity			ovary(1)	1		Prostate(94;0.0405)				CCGACGCCCGGGAGAACCGGC	0.662													5	48					0	0	0.001168	0	0
NID1	4811	broad.mit.edu	37	1	236154240	236154241	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr1:236154240_236154241GG>AA	uc001hxo.2	-	14	2975_2976	c.2873_2874CC>TT	c.(2872-2874)CCC>CTT	p.P958L	NID1_uc009xgd.2_Missense_Mutation_p.P825L|NID1_uc009xgc.2_Missense_Mutation_p.P44L	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	958					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TTCCCTCCAGGGGCAGGCGCTC	0.574													11	87					0	0	0.004672	0	0
TUBB8	347688	broad.mit.edu	37	10	93805	93805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:93805G>A	uc001ifi.2	-	4	527	c.527C>T	c.(526-528)TCG>TTG	p.S176L	TUBB8_uc009xhe.2_Missense_Mutation_p.S139L|TUBB8_uc010pzs.1_Missense_Mutation_p.S104L	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	176					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		CACGGTGTCCGACACCTTGGG	0.537													14	243					0	0	0.007413	0	0
TUBAL3	79861	broad.mit.edu	37	10	5435757	5435758	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:5435757_5435758GG>AA	uc001ihy.2	-	4	1103_1104	c.1063_1064CC>TT	c.(1063-1065)CCA>TTA	p.P355L	TUBAL3_uc001ihz.2_Missense_Mutation_p.P315L	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	355					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						GAAACCAGTTGGACACCAATCT	0.569													6	49					0	0	0.004672	0	0
CALML5	51806	broad.mit.edu	37	10	5541065	5541065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:5541065G>A	uc001iic.2	-	1	469	c.337C>T	c.(337-339)CCG>TCG	p.P113S		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	113	EF-hand 3.				epidermis development|signal transduction		calcium ion binding|protein binding				0						TGCGGCAGCGGCTGCCCCAGC	0.706													5	23					0	0	0.000602	0	0
MYO3A	53904	broad.mit.edu	37	10	26359144	26359144	+	Silent	SNP	G	A	A	rs77562287	byFrequency	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:26359144G>A	uc001isn.2	+	13	1635	c.1275G>A	c.(1273-1275)CAG>CAA	p.Q425Q	MYO3A_uc009xko.1_Silent_p.Q425Q|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Silent_p.Q425Q	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	425	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ATTCAGATCAGGTAAGAAGAG	0.333													11	34					0	0	0.008291	0	0
ZEB1	6935	broad.mit.edu	37	10	31799699	31799699	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:31799699G>C	uc001ivs.3	+	5	643	c.580G>C	c.(580-582)GAA>CAA	p.E194Q	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Missense_Mutation_p.E120Q|ZEB1_uc010qeg.1_Missense_Mutation_p.E53Q|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Missense_Mutation_p.E195Q|ZEB1_uc001ivv.3_Missense_Mutation_p.E174Q|ZEB1_uc010qeh.1_Missense_Mutation_p.E127Q|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Missense_Mutation_p.E177Q|ZEB1_uc009xlp.2_Missense_Mutation_p.E178Q	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	194					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				ATATCGTCATGAAAAGAATGA	0.383													4	14					0	0	0.001168	0	0
BMS1	9790	broad.mit.edu	37	10	43318597	43318597	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:43318597A>G	uc001jaj.2	+	20	3522	c.3164A>G	c.(3163-3165)AAA>AGA	p.K1055R		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1055					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						GAAGTGGCCAAATTTGAAGGT	0.428													3	103					0	0	0.004672	0	0
SYT15	83849	broad.mit.edu	37	10	46967552	46967552	+	Silent	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:46967552T>C	uc001jea.2	-	4	678	c.525A>G	c.(523-525)CAA>CAG	p.Q175Q	SYT15_uc001jdz.2_Silent_p.Q175Q|SYT15_uc001jeb.2_Silent_p.Q53Q|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	175	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						CCGAGGGGGCTTGCAGGTGCT	0.637													10	147					0	0	0.006214	0	0
RBP3	5949	broad.mit.edu	37	10	48388910	48388910	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:48388910G>A	uc001jez.2	-	1	2082	c.1968C>T	c.(1966-1968)GTC>GTT	p.V656V		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	656	4 X approximate tandem repeats.|3.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TCTGCCCCACGACCTCTGGCC	0.662													4	27					0	0	0.000248	0	0
GDF2	2658	broad.mit.edu	37	10	48416570	48416570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:48416570C>T	uc001jfa.1	-	1	287	c.124G>A	c.(124-126)GGG>AGG	p.G42R		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	42					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCAGGCACCCCCAGTGGGCTG	0.637													7	39					0	0	0.001984	0	0
DRGX	644168	broad.mit.edu	37	10	50594617	50594617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:50594617G>A	uc010qgq.1	-	5	448	c.448C>T	c.(448-450)CCT>TCT	p.P150S		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	150					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCCCTGCAGGACCTACCGTT	0.627													4	7					0	0	0.000602	0	0
BICC1	80114	broad.mit.edu	37	10	60566913	60566913	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:60566913T>C	uc001jki.1	+	17	2371	c.2371T>C	c.(2371-2373)TAT>CAT	p.Y791H	BICC1_uc001jkj.1_Missense_Mutation_p.Y432H	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	791					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						GACAACCACTTATGAGGTTTG	0.458													3	19					0	0	0.000248	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541630	96541630	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:96541630A>G	uc010qnz.1	+	5	695	c.695A>G	c.(694-696)AAA>AGA	p.K232R	CYP2C19_uc009xus.1_Missense_Mutation_p.K97R|CYP2C19_uc010qny.1_Missense_Mutation_p.K210R	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	232					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	ACCCATAACAAATTACTTAAA	0.299													3	10					0	0	0.000248	0	0
SORCS3	22986	broad.mit.edu	37	10	106959778	106959778	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:106959778C>T	uc001kyi.1	+	15	2258	c.2031C>T	c.(2029-2031)CTC>CTT	p.L677L	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	677	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACTTCAGCCTCCGCTCCGAAT	0.498													3	13					0	0	0.004672	0	0
PNLIP	5406	broad.mit.edu	37	10	118315528	118315528	+	Silent	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:118315528G>C	uc001lcm.2	+	9	871	c.828G>C	c.(826-828)GCG>GCC	p.A276A		NM_000936	NP_000927	P16233	LIPP_HUMAN	pancreatic lipase precursor	276					lipid catabolic process|retinoid metabolic process|steroid metabolic process	extracellular region	retinyl-palmitate esterase activity|triglyceride lipase activity			ovary(1)|central_nervous_system(1)|skin(1)	3				all cancers(201;0.0131)	Bentiromide(DB00522)|Orlistat(DB01083)	GAGACTTTGCGGCCTGTAATC	0.403													4	52					0	0	0.000248	0	0
TACC2	10579	broad.mit.edu	37	10	123842181	123842181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:123842181G>A	uc001lfv.2	+	4	526	c.166G>A	c.(166-168)GGA>AGA	p.G56R	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G56R|TACC2_uc010qtv.1_Missense_Mutation_p.G56R	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	56						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CGTTGGGCTTGGAGGCTTCTG	0.562													7	110					0	0	0.004482	0	0
TRPM5	29850	broad.mit.edu	37	11	2439807	2439807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:2439807C>T	uc001lwm.3	-	5	673	c.664G>A	c.(664-666)GAG>AAG	p.E222K	TRPM5_uc010qxl.1_Missense_Mutation_p.E222K|TRPM5_uc009ydn.2_Missense_Mutation_p.E224K	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	222	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		ACAGGGATCTCGATGCTGCCA	0.642													40	286					0	0	0.002222	0	0
STIM1	6786	broad.mit.edu	37	11	4112672	4112672	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:4112672C>T	uc001lyv.2	+	12	2270	c.1702C>T	c.(1702-1704)CTG>TTG	p.L568L	STIM1_uc009yef.2_3'UTR|STIM1_uc009yeg.2_Silent_p.L395L	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	568	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		CCCAGGGTCTCTGGTGGAGAA	0.622													7	48					0	0	0.001984	0	0
OR52M1	119772	broad.mit.edu	37	11	4566953	4566953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:4566953C>T	uc010qyf.1	+	1	533	c.533C>T	c.(532-534)TCC>TTC	p.S178F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CATGTTATCTCCCACTCCTAC	0.527													6	34					0	0	0.001984	0	0
OR52B6	340980	broad.mit.edu	37	11	5602787	5602787	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:5602787C>T	uc010qzi.1	+	1	681	c.681C>T	c.(679-681)GGC>GGT	p.G227G	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	227	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTCCACAGGCCTAGACATCA	0.507													35	203					0	0	0.003755	0	0
RRP8	23378	broad.mit.edu	37	11	6623248	6623248	+	Missense_Mutation	SNP	C	A	A	rs140361064		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:6623248C>A	uc001med.2	-	2	376	c.297G>T	c.(295-297)CAG>CAT	p.Q99H	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	99					chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						AAGGTGGGCCCTGTTTTTGAC	0.463													12	92					6.40141e-05	8.85165e-05	0.000978	1	0
CALCA	796	broad.mit.edu	37	11	14992730	14992730	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:14992730G>A	uc001mlt.1	-	2	84	c.9C>T	c.(7-9)TTC>TTT	p.F3F	CALCA_uc001mlu.1_RNA|CALCA_uc001mlv.1_Silent_p.F3F|CALCA_uc001mlw.1_Silent_p.F3F	NM_001033953	NP_001029125	P06881	CALCA_HUMAN	calcitonin isoform CGRP preproprotein	3					activation of adenylate cyclase activity|cell-cell signaling|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|endothelial cell migration|endothelial cell proliferation|leukocyte cell-cell adhesion|negative regulation of blood pressure|negative regulation of bone resorption|negative regulation of calcium ion transport into cytosol|negative regulation of osteoclast differentiation|neurological system process involved in regulation of systemic arterial blood pressure|positive regulation of interleukin-1 alpha production|positive regulation of interleukin-8 production|positive regulation of macrophage differentiation|positive regulation of vasodilation|regulation of blood pressure|vasculature development|vasodilation	cytosol|extracellular space	hormone activity			central_nervous_system(1)	1					Phentolamine(DB00692)	AGAACTTTTGGAAGCCCATGA	0.542													8	68					0	0	0.006214	0	0
USH1C	10083	broad.mit.edu	37	11	17542474	17542474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:17542474G>A	uc001mnf.2	-	14	1262	c.1153C>T	c.(1153-1155)CTC>TTC	p.L385F	USH1C_uc001mne.2_Missense_Mutation_p.L385F|USH1C_uc009yhb.2_Missense_Mutation_p.L366F|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.L349F	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	385					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TTAGGCAAGAGTAGCTGTTCC	0.488													64	457					0	0	0.003610	0	0
PRR5L	79899	broad.mit.edu	37	11	36472831	36472831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:36472831C>T	uc001mwo.3	+	8	1047	c.658C>T	c.(658-660)CCT>TCT	p.P220S	PRR5L_uc001mwp.2_Missense_Mutation_p.P220S|PRR5L_uc009ykk.2_Missense_Mutation_p.P92S|PRR5L_uc010rfc.1_Intron	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	220										ovary(1)	1						AGTGGTTTCTCCTTTCCTCGG	0.532													13	59					0	0	0.001855	0	0
MYBPC3	4607	broad.mit.edu	37	11	47360953	47360953	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:47360953C>T	uc001nfa.3	-	21	2125	c.2070G>A	c.(2068-2070)GGG>GGA	p.G690G	MYBPC3_uc010rhl.1_RNA	NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	689	Ig-like C2-type 5.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		GGGCCTTATTCCCCTGGGAAC	0.617													24	148					0	0	0.003954	0	0
OR5D14	219436	broad.mit.edu	37	11	55563508	55563508	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:55563508G>A	uc010rim.1	+	1	477	c.477G>A	c.(475-477)TTG>TTA	p.L159L		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TTGGCCCCTTGGTACTCCTTT	0.498													10	73					0	0	0.006214	0	0
OR8H3	390152	broad.mit.edu	37	11	55890093	55890093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:55890093C>T	uc001nii.1	+	1	245	c.245C>T	c.(244-246)ACC>ATC	p.T82I		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					ACACCTAAAACCTTAGCGAAC	0.433													11	90					0	0	0.003163	0	0
OR8H3	390152	broad.mit.edu	37	11	55890553	55890553	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:55890553G>A	uc001nii.1	+	1	705	c.705G>A	c.(703-705)CAG>CAA	p.Q235Q		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					CAGGAAAGCAGAAAGCTTTCT	0.413													3	19					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	11	58660159	58660159	+	RNA	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:58660159G>A	uc001nne.1	+	2		c.99G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit13-03-08-F.																		TTAGGTGAGGGGATAAGAGCA	0.413													5	12					0	0	0.001168	0	0
MPEG1	219972	broad.mit.edu	37	11	58980257	58980257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:58980257C>T	uc001nnu.3	-	1	238	c.82G>A	c.(82-84)GAA>AAA	p.E28K		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	28	Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				ACTCCAACTTCGTCCATCTCT	0.557													6	41					0	0	0.003080	0	0
B3GAT3	26229	broad.mit.edu	37	11	62384617	62384617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:62384617G>A	uc001ntw.2	-	3	489	c.460C>T	c.(460-462)CAT>TAT	p.H154Y	B3GAT3_uc009ynz.2_Missense_Mutation_p.H147Y|B3GAT3_uc001ntx.2_RNA|B3GAT3_uc010rlz.1_Missense_Mutation_p.H154Y	NM_012200	NP_036332	O94766	B3GA3_HUMAN	beta-1,3-glucuronyltransferase 3	154	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|manganese ion binding				0						CCACGGGGATGAACCCAGCCA	0.687													9	60					0	0	0.008291	0	0
ZBTB3	79842	broad.mit.edu	37	11	62520117	62520117	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:62520117C>T	uc001nuz.2	-	2	1292	c.1170G>A	c.(1168-1170)CAG>CAA	p.Q390Q		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	390					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						GCTGGGAGGGCTGTGCCCCAT	0.562													9	71					0	0	0.004482	0	0
CATSPER1	117144	broad.mit.edu	37	11	65793308	65793308	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:65793308G>A	uc001ogt.2	-	1	681	c.543C>T	c.(541-543)CCC>CCT	p.P181P		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	181	His-rich.|Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						TGGGTCCATGGGGGAGGTAGG	0.592													14	88					0	0	0.002450	0	0
NPAS4	266743	broad.mit.edu	37	11	66191061	66191061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:66191061G>A	uc001ohx.1	+	6	997	c.821G>A	c.(820-822)GGA>GAA	p.G274E	NPAS4_uc010rpc.1_Missense_Mutation_p.G64E	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	274					transcription, DNA-dependent		DNA binding|signal transducer activity				0						GCTGAGAGTGGAGATATTCAG	0.522													9	85					0	0	0.000978	0	0
NUMA1	4926	broad.mit.edu	37	11	71725701	71725701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:71725701C>T	uc001orl.1	-	15	3020	c.2848G>A	c.(2848-2850)GAG>AAG	p.E950K	NUMA1_uc009ysw.1_Missense_Mutation_p.E513K|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.E950K|NUMA1_uc001orn.2_Missense_Mutation_p.E513K|NUMA1_uc009ysx.1_Missense_Mutation_p.E950K|NUMA1_uc001oro.1_Missense_Mutation_p.E950K	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	950	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TCCAGCCACTCGGGCTGTCTG	0.637			T	RARA	APL								14	86					0	0	0.001855	0	0
ARAP1	116985	broad.mit.edu	37	11	72424253	72424253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:72424253G>A	uc001osu.2	-	5	904	c.715C>T	c.(715-717)CCG>TCG	p.P239S	ARAP1_uc001osv.2_Missense_Mutation_p.P239S|ARAP1_uc001osr.2_5'UTR|ARAP1_uc001oss.2_5'UTR|ARAP1_uc009yth.2_5'UTR|ARAP1_uc010rre.1_5'UTR	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	239					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						GGGGCCCCCGGCCCCTCCTCT	0.667													22	261					0	0	0.002780	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74911402	74911402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:74911402C>T	uc001owb.2	+	11	2120	c.1733C>T	c.(1732-1734)ACC>ATC	p.T578I	SLCO2B1_uc010rrq.1_Missense_Mutation_p.T323I|SLCO2B1_uc010rrr.1_Missense_Mutation_p.T434I|SLCO2B1_uc010rrs.1_Missense_Mutation_p.T462I|SLCO2B1_uc001owc.2_Missense_Mutation_p.T351I|SLCO2B1_uc001owd.2_Missense_Mutation_p.T556I	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	578	Helical; Name=10; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GCCTGTCTCACCCACACACCC	0.622													28	154					0	0	0.002836	0	0
ODZ4	26011	broad.mit.edu	37	11	78369243	78369244	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:78369243_78369244CC>TT	uc001ozl.3	-	34	8632_8633	c.8169_8170GG>AA	c.(8167-8172)GGGGAG>GGAAAG	p.E2724K	ODZ4_uc001ozk.3_Missense_Mutation_p.E949K|ODZ4_uc009yvb.1_Intron	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2724	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TGCTGCTTCTCCCCCTCTGTCC	0.653													16	105					0	0	0.004672	0	0
CCDC67	159989	broad.mit.edu	37	11	93170761	93170761	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:93170761T>A	uc001pdq.2	+	14	1791	c.1691T>A	c.(1690-1692)CTG>CAG	p.L564Q		NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	564	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				CATTTCCTTCTGGAAGAAGAG	0.373													7	37					0	0	0.001984	0	0
IL10RA	3587	broad.mit.edu	37	11	117869672	117869672	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:117869672G>A	uc001prv.2	+	7	1130	c.1053G>A	c.(1051-1053)AGG>AGA	p.R351R	IL10RA_uc010rxl.1_Silent_p.R331R|IL10RA_uc010rxm.1_Silent_p.R331R|IL10RA_uc010rxn.1_Silent_p.R202R|IL10RA_uc001prw.2_Silent_p.R202R	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	351	Cytoplasmic (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		TGGGAAACAGGGAGCCCCCTG	0.642													11	50					0	0	0.000978	0	0
TECTA	7007	broad.mit.edu	37	11	121016712	121016712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:121016712C>T	uc010rzo.1	+	11	3992	c.3992C>T	c.(3991-3993)TCT>TTT	p.S1331F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1331					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CTGTTTGACTCTTGCATCGAT	0.572													18	155					0	0	0.001523	0	0
TECTA	7007	broad.mit.edu	37	11	121058591	121058591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:121058591C>T	uc010rzo.1	+	20	6050	c.6050C>T	c.(6049-6051)TCC>TTC	p.S2017F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2017	ZP.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		AATGCAGTCTCCCTGACCTGT	0.433													13	73					0	0	0.003163	0	0
OR6T1	219874	broad.mit.edu	37	11	123814138	123814138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:123814138C>T	uc010sab.1	-	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CATGGCCATTCATCAGGGTCT	0.552													4	18					0	0	0.000602	0	0
HEPACAM	220296	broad.mit.edu	37	11	124794781	124794781	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:124794781G>A	uc001qbk.2	-	2	676	c.270C>T	c.(268-270)ACC>ACT	p.T90T	HEPACAM_uc009zbj.2_5'Flank|HEPACAM_uc001qbl.1_Silent_p.T90T	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	90	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		CAGGCCGCAGGGTGCCGATGA	0.592													14	111					0	0	0.004990	0	0
IGSF9B	22997	broad.mit.edu	37	11	133801388	133801388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:133801388G>A	uc001qgx.3	-	10	1559	c.1328C>T	c.(1327-1329)GCT>GTT	p.A443V	IGSF9B_uc001qgy.1_Missense_Mutation_p.A285V	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	443	Extracellular (Potential).|Ig-like 5.					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CCCTGCGGCAGCACAGGGGAT	0.662													8	72					0	0	0.003080	0	0
KCNA5	3741	broad.mit.edu	37	12	5153890	5153890	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:5153890C>T	uc001qni.2	+	1	806	c.577C>T	c.(577-579)CTG>TTG	p.L193L		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	193						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						CAACGTCTCCCTGGACGTGTT	0.617													15	76					0	0	0.004007	0	0
PEX5	5830	broad.mit.edu	37	12	7361078	7361078	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:7361078C>T	uc009zfu.1	+	14	1787	c.1207C>T	c.(1207-1209)CAG>TAG	p.Q403*	PEX5_uc001qsw.2_Nonsense_Mutation_p.Q403*|PEX5_uc010sgc.1_Nonsense_Mutation_p.Q418*|PEX5_uc001qsu.2_Nonsense_Mutation_p.Q366*|PEX5_uc010sgd.1_Nonsense_Mutation_p.Q424*|PEX5_uc001qsv.2_Nonsense_Mutation_p.Q395*	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	403	TPR 3.				protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						GCCAGATAACCAGACAGCACT	0.552													7	30					0	0	0.004482	0	0
LOC642846	642846	broad.mit.edu	37	12	9463857	9463857	+	RNA	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:9463857C>T	uc010sgp.1	+	21		c.2486C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GAAGGGTGGCCTGCTGGGCCG	0.617													3	22					0	0	0.000248	0	0
C12orf36	283422	broad.mit.edu	37	12	13529165	13529165	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:13529165G>A	uc001rbs.1	-	2	393	c.175C>T	c.(175-177)CTG>TTG	p.L59L		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		cacctccacagcctctgagtc	0.05													6	40					0	0	0.003080	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21370151	21370151	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:21370151G>A	uc001req.3	+	12	1700	c.1596G>A	c.(1594-1596)AGG>AGA	p.R532R		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	532	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CTTGTACAAGGAAATTTTACT	0.378													8	49					0	0	0.003080	0	0
H3F3C	440093	broad.mit.edu	37	12	31945009	31945009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:31945009G>A	uc001rkr.2	-	1	167	c.92C>T	c.(91-93)CCC>CTC	p.P31L		NM_001013699	NP_001013721	Q6NXT2	H3C_HUMAN	histone H3-like	31					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCAGGTAGAGGGGGTGCTTTT	0.587										HNSCC(67;0.2)			15	83					0	0	0.004007	0	0
NELL2	4753	broad.mit.edu	37	12	44915913	44915913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:44915913G>A	uc001rog.2	-	18	2640	c.2045C>T	c.(2044-2046)CCC>CTC	p.P682L	NELL2_uc001rof.3_Missense_Mutation_p.P681L|NELL2_uc001roh.2_Missense_Mutation_p.P682L|NELL2_uc009zkd.2_Missense_Mutation_p.P634L|NELL2_uc010skz.1_Missense_Mutation_p.P732L|NELL2_uc010sla.1_Missense_Mutation_p.P705L	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	682	VWFC 3.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity	p.P682S(1)		skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		ATCAACTGTGGGATTCTCACA	0.418													5	34					0	0	0.000602	0	0
FAM113B	91523	broad.mit.edu	37	12	47629420	47629420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:47629420G>A	uc001rpn.2	+	4	1305	c.574G>A	c.(574-576)GAA>AAA	p.E192K	FAM113B_uc010slj.1_Missense_Mutation_p.E72K|FAM113B_uc001rpq.2_Missense_Mutation_p.E192K	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	192							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CCTGAAAAACGAAGTGGTCAA	0.582													6	48					0	0	0.001168	0	0
DDX23	9416	broad.mit.edu	37	12	49237795	49237795	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:49237795C>A	uc001rsm.2	-	3	339	c.248G>T	c.(247-249)CGG>CTG	p.R83L		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	83	Arg-rich.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						ATTCCGATCCCGCTCCTTATC	0.488													6	316					0.000157383	0.000217189	0.003080	1	0
DDN	23109	broad.mit.edu	37	12	49390535	49390535	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:49390535C>T	uc001rsv.1	-	2	2142	c.2124G>A	c.(2122-2124)AGG>AGA	p.R708R	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	708	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						ACTGCCTCTTCCTATTTCCCT	0.547											OREG0021778	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	70					0	0	0.004007	0	0
MLL2	8085	broad.mit.edu	37	12	49432233	49432233	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:49432233G>A	uc001rta.3	-	34	8906	c.8906C>T	c.(8905-8907)TCG>TTG	p.S2969L		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2969	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CTCAGTGCTCGACGGGGGCCG	0.612			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			27	157					0	0	0.008361	0	0
MLL2	8085	broad.mit.edu	37	12	49434651	49434652	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:49434651_49434652GG>AA	uc001rta.3	-	31	6901_6902	c.6901_6902CC>TT	c.(6901-6903)CCC>TTC	p.P2301F		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	2301	Pro-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CAGGTTTGGGGGCCCATAGCTA	0.614			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			11	64					0	0	0.004672	0	0
SMARCD1	6602	broad.mit.edu	37	12	50480090	50480090	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:50480090C>T	uc001rvx.3	+	2	494	c.324C>T	c.(322-324)ATC>ATT	p.I108I	SMARCD1_uc010smo.1_Silent_p.I108I|SMARCD1_uc001rvy.3_Silent_p.I108I|SMARCD1_uc009zlp.2_Silent_p.I108I	NM_003076	NP_003067	Q96GM5	SMRD1_HUMAN	SWI/SNF-related matrix-associated	108	Interaction with ESR1, NR1H4, NR3C1, PGR and SMARCA4.				chromatin-mediated maintenance of transcription|nervous system development|regulation of transcription from RNA polymerase II promoter	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	protein complex scaffold|transcription coactivator activity			ovary(1)	1						CTCAGCAGATCCAGCAGGTCC	0.632													6	66					0	0	0.001984	0	0
OR6C75	390323	broad.mit.edu	37	12	55759684	55759684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:55759684G>A	uc010spk.1	+	1	790	c.790G>A	c.(790-792)GAA>AAA	p.E264K		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						TTCTGCCAGAGAAAGGGTGAC	0.418													3	8					0	0	0.004672	0	0
PPFIA2	8499	broad.mit.edu	37	12	82147926	82147926	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:82147926C>T	uc001szo.1	-	3	236	c.75G>A	c.(73-75)TCG>TCA	p.S25S	PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(3)|lung(2)|pancreas(1)	6						AGTCTGAGTCCGAGCCACTGC	0.498													4	15					0	0	0.000248	0	0
PRDM4	11108	broad.mit.edu	37	12	108147758	108147759	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:108147758_108147759GG>AA	uc001tmp.2	-	4	710_711	c.273_274CC>TT	c.(271-276)ACCCTA>ACTTTA	p.91_92TL>TL	PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	91_92					cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GGTGGAGGTAGGGTGTAGTTTC	0.48													8	58					0	0	0.004672	0	0
WSCD2	9671	broad.mit.edu	37	12	108618519	108618519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:108618519G>A	uc001tms.2	+	5	1430	c.686G>A	c.(685-687)GGA>GAA	p.G229E	WSCD2_uc001tmt.2_Missense_Mutation_p.G229E|WSCD2_uc001tmu.2_5'UTR	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	229						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						TCTTCAGATGGAAGTGCAGTG	0.463													9	59					0	0	0.006214	0	0
SDS	10993	broad.mit.edu	37	12	113835157	113835157	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:113835157G>A	uc001tvg.2	-	6	588	c.466C>T	c.(466-468)CTG>TTG	p.L156L	SDS_uc001tvh.1_Silent_p.L156L	NM_006843	NP_006834	P20132	SDHL_HUMAN	serine dehydratase	156					gluconeogenesis|L-serine catabolic process|pyruvate biosynthetic process	cytoplasm	L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|protein homodimerization activity|pyridoxal phosphate binding			pancreas(1)	1					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TTTTCCCACAGTGTCTCCTTC	0.677													14	82					0	0	0.002450	0	0
MED13L	23389	broad.mit.edu	37	12	116422133	116422133	+	Silent	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:116422133A>C	uc001tvw.2	-	20	4438	c.4383T>G	c.(4381-4383)CGT>CGG	p.R1461R		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1461					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		TGATCCCGTCACGTAGCACTT	0.488													3	18					0	0	0.000248	0	0
FZD10	11211	broad.mit.edu	37	12	130648594	130648594	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr12:130648594C>T	uc001uii.2	+	1	1563	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	369	Helical; Name=4; (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CCATCCTGATCCTGGTCATGC	0.667													11	77					0	0	0.000978	0	0
LOC284232	284232	broad.mit.edu	37	13	19415641	19415641	+	RNA	SNP	A	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:19415641A>T	uc010tcj.1	-	1		c.30469T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaaaaaaaaaaacccaaaca	0.169													4	36					0	0	0.000248	0	0
SACS	26278	broad.mit.edu	37	13	23906876	23906876	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:23906876G>A	uc001uon.2	-	10	11728	c.11139C>T	c.(11137-11139)CCC>CCT	p.P3713P	SACS_uc001uoo.2_Silent_p.P3566P|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3713					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TAATGCTTAAGGGTGTAGCTT	0.393													4	37					0	0	0.000248	0	0
POSTN	10631	broad.mit.edu	37	13	38137495	38137495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:38137495C>T	uc001uwo.3	-	23	2604	c.2486G>A	c.(2485-2487)CGA>CAA	p.R829Q	POSTN_uc010tet.1_Missense_Mutation_p.R330Q|POSTN_uc001uwp.3_Missense_Mutation_p.R772Q|POSTN_uc001uwr.2_Missense_Mutation_p.R774Q|POSTN_uc001uwq.2_Missense_Mutation_p.R744Q	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	829					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TTCCCTTAATCGTCTTCTAGA	0.299													4	33					0	0	0.001168	0	0
FNDC3A	22862	broad.mit.edu	37	13	49772281	49772281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:49772281C>T	uc001vcm.2	+	22	2959	c.2654C>T	c.(2653-2655)CCT>CTT	p.P885L	FNDC3A_uc001vcn.2_Missense_Mutation_p.P885L|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcq.2_Missense_Mutation_p.P829L	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	885	Fibronectin type-III 7.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		TGGGAAAAGCCTTGTGATCAT	0.403													4	45					0	0	0.000602	0	0
NEK3	4752	broad.mit.edu	37	13	52728269	52728269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:52728269G>A	uc001vgi.2	-	3	392	c.157C>T	c.(157-159)CTT>TTT	p.L53F	NEK3_uc001vgg.2_Missense_Mutation_p.L47F|NEK3_uc001vgh.2_Missense_Mutation_p.L74F|NEK3_uc010tgx.1_RNA|NEK3_uc010tgy.1_Missense_Mutation_p.L53F	NM_152720	NP_689933	P51956	NEK3_HUMAN	NIMA-related kinase 3 isoform a	53	Interaction with VAV2.|Protein kinase.				cell division|mitosis	nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.034)|Hepatocellular(98;0.065)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.81e-08)		TTGGCTAAAAGAACAGCCTCC	0.299													4	22					0	0	0.000602	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488													4	87					0	0	0.000602	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454713	84454713	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:84454713C>T	uc001vlk.2	-	1	1816	c.930G>A	c.(928-930)AAG>AAA	p.K310K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	310	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGCCTGGGATCTTTGTACCTC	0.537													14	71					0	0	0.001855	0	0
TPP2	7174	broad.mit.edu	37	13	103279436	103279436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:103279436C>T	uc001vpi.3	+	7	962	c.859C>T	c.(859-861)CCT>TCT	p.P287S		NM_003291	NP_003282	P29144	TPP2_HUMAN	tripeptidyl peptidase II	287					proteolysis	cytoplasm|nucleus	aminopeptidase activity|serine-type endopeptidase activity|tripeptidyl-peptidase activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TGGGGTAGCTCCTGGTGCTCA	0.463													8	64					0	0	0.004482	0	0
DHRS2	10202	broad.mit.edu	37	14	24108421	24108421	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:24108421G>A	uc001wkt.3	+	3	621	c.174G>A	c.(172-174)CGG>CGA	p.R58R	DHRS2_uc010aku.1_Silent_p.R58R|DHRS2_uc001wku.3_Silent_p.R58R|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_Silent_p.R58R	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	36	NAD or NADP (By similarity).				C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		GTCTGGCCCGGGACGGGGCCC	0.642													36	175					0	0	0.004878	0	0
KTN1	3895	broad.mit.edu	37	14	56084684	56084684	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:56084684T>C	uc001xcb.2	+	5	966	c.664T>C	c.(664-666)TTC>CTC	p.F222L	KTN1_uc001xce.2_Missense_Mutation_p.F222L|KTN1_uc001xcc.2_Missense_Mutation_p.F222L|KTN1_uc001xcd.2_Missense_Mutation_p.F222L|KTN1_uc010trb.1_Missense_Mutation_p.F222L|KTN1_uc001xcf.1_Missense_Mutation_p.F222L	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	222	Lumenal (Potential).				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						AATTGCAGTCTTCGTAGATGA	0.313			T	RET	papillary thryoid								3	20					0	0	0.004672	0	0
C14orf166B	145497	broad.mit.edu	37	14	77319594	77319594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:77319594G>A	uc001xsx.2	+	9	963	c.849G>A	c.(847-849)ATG>ATA	p.M283I	C14orf166B_uc010asn.1_Missense_Mutation_p.M43I|C14orf166B_uc001xsw.2_Intron|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	283	LRR 6.										0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		ATCTCTCCATGAATGGCTTTG	0.547													11	101					0	0	0.000978	0	0
KLC1	3831	broad.mit.edu	37	14	104123953	104123953	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:104123953G>T	uc001yno.2	+	3	640	c.332G>T	c.(331-333)CGT>CTT	p.R111L	KLC1_uc010tyd.1_Missense_Mutation_p.R270L|KLC1_uc010tye.1_Missense_Mutation_p.R107L|KLC1_uc001ynm.1_Missense_Mutation_p.R111L|KLC1_uc001ynn.1_Missense_Mutation_p.R107L|KLC1_uc010tyf.1_Missense_Mutation_p.R111L	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	111					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				GCGCAGGTTCGTCGTCTGTGC	0.537													8	73					0.000274275	0.000377744	0.004482	1	0
KLC1	3831	broad.mit.edu	37	14	104123955	104123955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:104123955C>T	uc001yno.2	+	3	642	c.334C>T	c.(334-336)CGT>TGT	p.R112C	KLC1_uc010tyd.1_Missense_Mutation_p.R271C|KLC1_uc010tye.1_Missense_Mutation_p.R108C|KLC1_uc001ynm.1_Missense_Mutation_p.R112C|KLC1_uc001ynn.1_Missense_Mutation_p.R108C|KLC1_uc010tyf.1_Missense_Mutation_p.R112C	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	112					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				GCAGGTTCGTCGTCTGTGCCA	0.532													8	75					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106725137	106725137	+	RNA	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr14:106725137C>T	uc010tyt.1	-	589		c.18377G>A								Parts of antibodies, mostly variable regions.												0						CCGCTGATTTCCCCCCCATCG	0.587													7	38					0	0	0.001984	0	0
C15orf2	23742	broad.mit.edu	37	15	24922056	24922056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:24922056C>T	uc001ywo.2	+	1	1516	c.1042C>T	c.(1042-1044)CGA>TGA	p.R348*		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	348	Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCTGTGGGATCGAGGTGAGCT	0.567													11	63					0	0	0.008291	0	0
TTBK2	146057	broad.mit.edu	37	15	43044548	43044548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:43044548C>T	uc001zqo.2	-	14	3335	c.2896G>A	c.(2896-2898)GAA>AAA	p.E966K	TTBK2_uc010bcy.2_Missense_Mutation_p.E897K	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	966					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		AGGAGCTTTTCTTTTGCAGAA	0.443													10	63					0	0	0.008291	0	0
TGM5	9333	broad.mit.edu	37	15	43552346	43552346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:43552346G>A	uc001zrd.1	-	3	348	c.340C>T	c.(340-342)CGG>TGG	p.R114W	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	114					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	AAGAGGTACCGACCCACGGCC	0.612													14	149					0	0	0.002450	0	0
DUOX2	50506	broad.mit.edu	37	15	45387730	45387730	+	Silent	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:45387730A>G	uc010bea.2	-	31	4347	c.4144T>C	c.(4144-4146)TTG>CTG	p.L1382L	DUOX2_uc001zun.2_Silent_p.L1382L	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1382	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCTCCCACCAACACTGACACC	0.547													14	82					0	0	0.002450	0	0
WDR72	256764	broad.mit.edu	37	15	53998215	53998215	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:53998215G>T	uc002acj.2	-	10	1053	c.1011C>A	c.(1009-1011)TAC>TAA	p.Y337*	WDR72_uc010bfi.1_Nonsense_Mutation_p.Y337*	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	337	WD 4.									lung(1)|skin(1)	2				all cancers(107;0.0511)		AAAGTACCTTGTAAAAAGGCT	0.398													4	18					0.000602214	0.000827745	0.000602	1	0
PYGO1	26108	broad.mit.edu	37	15	55838771	55838771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:55838771G>A	uc010bfl.1	-	3	766	c.710C>T	c.(709-711)CCA>CTA	p.P237L	PYGO1_uc002adf.1_Missense_Mutation_p.P237L	NM_015617	NP_056432	Q9Y3Y4	PYGO1_HUMAN	pygopus homolog 1	237	Asn-rich.				Wnt receptor signaling pathway	nucleus	zinc ion binding			ovary(1)|skin(1)	2				all cancers(107;0.0131)|GBM - Glioblastoma multiforme(80;0.18)		GTCTTGTTTTGGGGGTGGTGC	0.373													5	21					0	0	0.001168	0	0
LCTL	197021	broad.mit.edu	37	15	66856293	66856293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:66856293C>T	uc002aqc.2	-	3	458	c.326G>A	c.(325-327)CGA>CAA	p.R109Q	LCTL_uc002aqd.3_5'UTR|LCTL_uc010bhw.2_5'UTR	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	109	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						CAGGGAGAATCGGTAGTGGTT	0.622													10	92					0	0	0.001368	0	0
PKM2	5315	broad.mit.edu	37	15	72501167	72501167	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:72501167G>A	uc002atx.1	-	6	872	c.631C>T	c.(631-633)CTT>TTT	p.L211F	PKM2_uc002ats.1_5'Flank|PKM2_uc002att.1_5'UTR|PKM2_uc002atu.1_5'UTR|PKM2_uc010bit.1_Missense_Mutation_p.L216F|PKM2_uc010uki.1_Missense_Mutation_p.L285F|PKM2_uc002atv.1_Missense_Mutation_p.L246F|PKM2_uc002atw.1_Missense_Mutation_p.L211F|PKM2_uc002aty.1_Missense_Mutation_p.L211F|PKM2_uc010ukj.1_Missense_Mutation_p.L196F|PKM2_uc010ukk.1_Missense_Mutation_p.L137F|PKM2_uc010biu.1_Missense_Mutation_p.L232F|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	211					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	GCCCCAGGAAGGTTCACACCC	0.542													4	33					0	0	0.000602	0	0
CCDC33	80125	broad.mit.edu	37	15	74627341	74627341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:74627341G>A	uc002axo.2	+	18	2445	c.2051G>A	c.(2050-2052)GGA>GAA	p.G684E	CCDC33_uc002axp.2_Missense_Mutation_p.G540E|CCDC33_uc002axq.2_Missense_Mutation_p.G311E|CCDC33_uc002axr.2_Missense_Mutation_p.G277E	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	887	Potential.						protein binding			ovary(3)|skin(2)	5						CGACGCTGGGGACGAGAGAAG	0.577													9	78					0	0	0.000978	0	0
MAN2C1	4123	broad.mit.edu	37	15	75654998	75654998	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:75654998G>A	uc002baf.2	-	7	899	c.882C>T	c.(880-882)ATC>ATT	p.I294I	MAN2C1_uc002bag.2_Silent_p.I294I|MAN2C1_uc002bah.2_Silent_p.I294I|MAN2C1_uc010bkk.2_Intron|MAN2C1_uc010umi.1_Silent_p.I76I|MAN2C1_uc010umj.1_RNA	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	294					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						AGCAGGCAAAGATGAACTCAG	0.632													8	59					0	0	0.003080	0	0
ACSBG1	23205	broad.mit.edu	37	15	78470956	78470956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:78470956C>T	uc002bdh.2	-	11	1758	c.1702G>A	c.(1702-1704)GAA>AAA	p.E568K	ACSBG1_uc010umw.1_Missense_Mutation_p.E564K|ACSBG1_uc010umx.1_Missense_Mutation_p.E326K	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	568					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						GGGTGCTCACCTTTGAGGCGC	0.353													6	30					0	0	0.001168	0	0
FSD2	123722	broad.mit.edu	37	15	83455736	83455736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:83455736C>T	uc002bjd.2	-	2	574	c.407G>A	c.(406-408)GGG>GAG	p.G136E	FSD2_uc010uol.1_Missense_Mutation_p.G136E|FSD2_uc010uom.1_Missense_Mutation_p.G136E	NM_001007122	NP_001007123	A1L4K1	FSD2_HUMAN	fibronectin type III and SPRY domain containing	136										central_nervous_system(1)	1						TGAGCCCCACCCTCCGAAGCC	0.592													5	61					0	0	0.001168	0	0
ACAN	176	broad.mit.edu	37	15	89401744	89401744	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr15:89401744G>A	uc010upo.1	+	12	6302	c.5928G>A	c.(5926-5928)GGG>GGA	p.G1976G	ACAN_uc010upp.1_Silent_p.G1976G|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1976					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACATGTCTGGGGAGCATTCTG	0.537													11	44					0	0	0.000978	0	0
SSTR5	6755	broad.mit.edu	37	16	1129746	1129746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:1129746C>T	uc002ckq.2	+	1	966	c.878C>T	c.(877-879)TCC>TTC	p.S293F	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	293	Helical; Name=7; (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	GTCATCCTCTCCTACGCCAAC	0.622													6	42					0	0	0.001168	0	0
CACNA1H	8912	broad.mit.edu	37	16	1260873	1260873	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:1260873C>T	uc002cks.2	+	21	4373	c.4125C>T	c.(4123-4125)TCC>TCT	p.S1375S	CACNA1H_uc002ckt.2_Silent_p.S1375S|CACNA1H_uc002cku.2_Silent_p.S81S|CACNA1H_uc010brj.2_Silent_p.S81S|CACNA1H_uc002ckv.2_Silent_p.S81S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	1375	Helical; Name=S3 of repeat III; (Potential).|III.				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGCTGGTGTCCCTGGTGGACA	0.682													19	153					0	0	0.006122	0	0
PRSS22	64063	broad.mit.edu	37	16	2906157	2906157	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:2906157C>T	uc002cry.1	-	3	273	c.207G>A	c.(205-207)AAG>AAA	p.K69K	PRSS22_uc002crz.1_Silent_p.K69K	NM_022119	NP_071402	Q9GZN4	BSSP4_HUMAN	protease, serine, 22 precursor	69	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1						GGGTCCCATTCTTCTGGATGC	0.627													11	101					0	0	0.000978	0	0
ZNF174	7727	broad.mit.edu	37	16	3454462	3454462	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:3454462G>T	uc002cvc.2	+	2	1254	c.439G>T	c.(439-441)GAG>TAG	p.E147*	ZNF174_uc002cva.2_Nonsense_Mutation_p.E147*|ZNF174_uc002cvb.2_Nonsense_Mutation_p.E147*	NM_003450	NP_003441	Q15697	ZN174_HUMAN	zinc finger protein 174 isoform a	147					negative regulation of transcription from RNA polymerase II promoter|viral reproduction	actin cytoskeleton|cytoplasm|nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0						GGTGCTCTTGGAGAAAACTGG	0.522													22	248					2.50493e-22	3.50589e-22	0.004656	1	0
A2BP1	54715	broad.mit.edu	37	16	7568299	7568299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:7568299G>A	uc002cys.2	+	5	1166	c.178G>A	c.(178-180)GAG>AAG	p.E60K	A2BP1_uc010buf.1_Missense_Mutation_p.E60K|A2BP1_uc002cyr.1_Missense_Mutation_p.E60K|A2BP1_uc002cyt.2_Missense_Mutation_p.E60K|A2BP1_uc010uxz.1_Missense_Mutation_p.E103K|A2BP1_uc010uya.1_Missense_Mutation_p.E96K|A2BP1_uc002cyv.1_Missense_Mutation_p.E60K|A2BP1_uc010uyb.1_Missense_Mutation_p.E60K|A2BP1_uc002cyw.2_Missense_Mutation_p.E80K|A2BP1_uc002cyy.2_Missense_Mutation_p.E80K|A2BP1_uc002cyx.2_Missense_Mutation_p.E80K|A2BP1_uc010uyc.1_Missense_Mutation_p.E80K	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	60					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CACGGTTCCCGAGCACACATT	0.657													19	183					0	0	0.007413	0	0
ABCC1	4363	broad.mit.edu	37	16	16215945	16215945	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:16215945C>T	uc010bvi.2	+	24	3679	c.3504C>T	c.(3502-3504)TTC>TTT	p.F1168F	ABCC1_uc010bvj.2_Silent_p.F1109F|ABCC1_uc010bvk.2_Silent_p.F1112F|ABCC1_uc010bvl.2_Silent_p.F1168F|ABCC1_uc010bvm.2_Silent_p.F1053F|ABCC1_uc002del.3_Silent_p.F1062F	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	1168	Cytoplasmic.|ABC transmembrane type-1 2.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TTCGAGCCTTCGAGGAGCAGG	0.612													6	47					0	0	0.001984	0	0
PRKCB	5579	broad.mit.edu	37	16	23847548	23847548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:23847548G>A	uc002dmd.2	+	1	249	c.52G>A	c.(52-54)GTG>ATG	p.V18M	PRKCB_uc002dme.2_Missense_Mutation_p.V18M	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	18					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GGAGAGCACCGTGCGCTTCGC	0.622													8	50					0	0	0.003080	0	0
KCTD13	253980	broad.mit.edu	37	16	29922374	29922374	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:29922374G>A	uc002duv.2	-	5	869	c.678C>T	c.(676-678)TTC>TTT	p.F226F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|ASPHD1_uc002duu.3_Intron|ASPHD1_uc010bzi.2_Intron|KCTD13_uc010vee.1_RNA	NM_178863	NP_849194	Q8WZ19	BACD1_HUMAN	potassium channel tetramerisation domain	226					cell migration|DNA replication|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0						CCTGCCCGTAGAAAGACCAGC	0.577													8	77					0	0	0.003080	0	0
ITGAL	3683	broad.mit.edu	37	16	30490500	30490500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:30490500C>T	uc002dyi.3	+	5	592	c.416C>T	c.(415-417)CCC>CTC	p.P139L	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Intron|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	139	FG-GAP 2.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	CTGCAGGGTCCCATGCTGCAG	0.547													11	78					0	0	0.002450	0	0
FBRS	64319	broad.mit.edu	37	16	30677847	30677847	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:30677847C>T	uc002dzd.3	+	6	491	c.228C>T	c.(226-228)TTC>TTT	p.F76F	FBRS_uc002dzc.3_Intron	NM_001105079	NP_001098549	Q9HAH7	FBRS_HUMAN	fibrosin	76										ovary(1)	1			Colorectal(24;0.103)			CCGACCATTTCCGGCCACCTT	0.587													14	134					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	16	32077387	32077387	+	RNA	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:32077387A>G	uc010vft.1	+	1		c.2A>G			uc010vfu.1_5'Flank					Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:aims0058h.																		GCCCAGTGTGAGGTGCAGCTG	0.537													20	100					0	0	0.008871	0	0
ITFG1	81533	broad.mit.edu	37	16	47189662	47189662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:47189662C>T	uc002eet.2	-	18	1869	c.1807G>A	c.(1807-1809)GAA>AAA	p.E603K	ITFG1_uc010vgg.1_Missense_Mutation_p.E348K|ITFG1_uc010vgh.1_3'UTR	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	603						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				CGGTGGGCTTCTTGTCGTTTT	0.333													10	66					0	0	0.001368	0	0
CMTM2	146225	broad.mit.edu	37	16	66613691	66613691	+	Missense_Mutation	SNP	G	A	A	rs9925443	byFrequency	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:66613691G>A	uc002ept.2	+	1	341	c.181G>A	c.(181-183)GAA>AAA	p.E61K	CMTM2_uc010cdu.2_Missense_Mutation_p.E61K	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	61					chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		GCCCAAGCACGAAGTGGGCAC	0.557													13	96					0	0	0.003163	0	0
FHOD1	29109	broad.mit.edu	37	16	67273330	67273330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:67273330G>A	uc002esl.2	-	2	341	c.229C>T	c.(229-231)CCC>TCC	p.P77S	FHOD1_uc010ced.2_5'UTR|FHOD1_uc010vjh.1_5'UTR	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	77	GBD/FH3.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		TATCCGGAGGGAGACACTTGC	0.567													12	86					0	0	0.001368	0	0
FTSJD1	55783	broad.mit.edu	37	16	71318845	71318845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:71318845G>A	uc010cga.2	-	3	1385	c.979C>T	c.(979-981)CAT>TAT	p.H327Y	FTSJD1_uc002ezy.3_Missense_Mutation_p.H327Y|FTSJD1_uc002ezz.3_Missense_Mutation_p.H327Y	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	327						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						AACAGAGGATGGATGGCCTCT	0.423													12	81					0	0	0.001368	0	0
ZNF23	7571	broad.mit.edu	37	16	71482269	71482269	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:71482269G>A	uc002faf.2	-	6	2473	c.1659C>T	c.(1657-1659)ATC>ATT	p.I553I	ZNF23_uc002fad.2_Silent_p.I495I|ZNF23_uc002fae.2_Silent_p.I495I|ZNF23_uc010vmf.1_Silent_p.I495I|ZNF23_uc002fag.2_Silent_p.I495I|ZNF23_uc002fah.2_Silent_p.I553I|ZNF23_uc002fai.2_Silent_p.I592I	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	553	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		CTCCTGTATGGATTCTCTGGT	0.433													5	38					0	0	0.000602	0	0
FOXF1	2294	broad.mit.edu	37	16	86546577	86546578	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:86546577_86546578GG>AA	uc002fjl.2	+	2	1069_1070	c.1026_1027GG>AA	c.(1024-1029)AAGGAG>AAAAAG	p.E343K		NM_001451	NP_001442	Q12946	FOXF1_HUMAN	forkhead box F1	343					branching involved in open tracheal system development|cardiac left ventricle morphogenesis|embryonic ectodermal digestive tract morphogenesis|endocardial cushion development|in utero embryonic development|lung vasculature development|midgut development|pancreas development|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|ureter development|venous blood vessel development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0						GTGACCGAAAGGAGTTTGTCTT	0.609													10	69					0	0	0.004672	0	0
CDH15	1013	broad.mit.edu	37	16	89256854	89256854	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr16:89256854G>A	uc002fmt.2	+	8	1259	c.1182G>A	c.(1180-1182)GTG>GTA	p.V394V		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	394	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GCACTCTGGTGGCCACCTTCT	0.662													4	26					0	0	0.000248	0	0
SLC43A2	124935	broad.mit.edu	37	17	1494708	1494708	+	Silent	SNP	G	A	A	rs12936338		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:1494708G>A	uc002fsv.2	-	8	875	c.786C>T	c.(784-786)TTC>TTT	p.F262F	SLC43A2_uc002fsu.2_Silent_p.F262F|SLC43A2_uc002fsw.2_Silent_p.F262F|SLC43A2_uc002fsx.2_Silent_p.F262F|SLC43A2_uc010vqo.1_Silent_p.F125F	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	262					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		CCTGCTTGTAGAACTGCTTCC	0.647													17	97					0	0	0.001523	0	0
ATP2A3	489	broad.mit.edu	37	17	3839759	3839759	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:3839759A>C	uc002fxb.1	-	16	2477	c.2326T>G	c.(2326-2328)TTC>GTC	p.F776V	ATP2A3_uc002fwx.1_Missense_Mutation_p.F776V|ATP2A3_uc002fwy.1_Missense_Mutation_p.F776V|ATP2A3_uc002fwz.1_Missense_Mutation_p.F776V|ATP2A3_uc002fxa.1_Missense_Mutation_p.F776V|ATP2A3_uc002fxc.1_Missense_Mutation_p.F776V|ATP2A3_uc002fxd.1_Missense_Mutation_p.F776V	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	776	Helical; Name=5; (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		GCCGTGAGGAAGATGCTGGAA	0.637													7	82					0	0	0.003080	0	0
PLD2	5338	broad.mit.edu	37	17	4722096	4722096	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:4722096C>T	uc002fzc.2	+	21	2252	c.2151C>T	c.(2149-2151)ATC>ATT	p.I717I	PLD2_uc002fzd.2_Silent_p.I717I	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	717	Catalytic.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	AGTATTCAATCCTGCATCGCC	0.637													14	145					0	0	0.007413	0	0
DVL2	1856	broad.mit.edu	37	17	7130544	7130544	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:7130544G>C	uc002gez.1	-	13	1690	c.1408C>G	c.(1408-1410)CCT>GCT	p.P470A	DVL2_uc010vtr.1_Missense_Mutation_p.P464A	NM_004422	NP_004413	O14641	DVL2_HUMAN	dishevelled 2	470	DEP.				canonical Wnt receptor signaling pathway involved in regulation of cell proliferation|intracellular signal transduction|neural tube closure|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|segment specification|transcription from RNA polymerase II promoter	cytosol|nucleus|plasma membrane	frizzled binding|identical protein binding|signal transducer activity			lung(1)|kidney(1)	2						CGCCGCTCAGGAAAGCCCTCC	0.577													11	124					0	0	0.004007	0	0
POLR2A	5430	broad.mit.edu	37	17	7402610	7402610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:7402610C>T	uc002ghf.3	+	10	1705	c.1471C>T	c.(1471-1473)CCG>TCG	p.P491S	POLR2A_uc002ghe.2_Missense_Mutation_p.P491S	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	491					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				TGTGACAACTCCGTACAATGC	0.547													8	46					0	0	0.003080	0	0
DNAH2	146754	broad.mit.edu	37	17	7637788	7637788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:7637788C>T	uc002giu.1	+	6	754	c.740C>T	c.(739-741)ACC>ATC	p.T247I	DNAH2_uc002git.2_Missense_Mutation_p.T247I|DNAH2_uc010vuk.1_Missense_Mutation_p.T247I	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	247	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCCCCTGCAGCCTCCATGATC	0.532													8	50					0	0	0.003080	0	0
MYH4	4622	broad.mit.edu	37	17	10351223	10351223	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:10351223A>G	uc002gmn.2	-	34	4988	c.4877T>C	c.(4876-4878)CTT>CCT	p.L1626P	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1626	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CATTTCATTAAGATCTCCCTC	0.468													11	93					0	0	0.000978	0	0
MYH2	4620	broad.mit.edu	37	17	10440552	10440552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:10440552C>T	uc010coi.2	-	16	2023	c.1895G>A	c.(1894-1896)GGA>GAA	p.G632E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G632E|MYH2_uc010coj.2_Missense_Mutation_p.G632E	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	632	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGCATTACCTCCTTCAGCAGT	0.438													10	49					0	0	0.008291	0	0
TEKT3	64518	broad.mit.edu	37	17	15231371	15231371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:15231371G>A	uc002gon.2	-	4	788	c.601C>T	c.(601-603)CAT>TAT	p.H201Y		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	201					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TTTTCTCGATGAAATAGACAT	0.403													8	37					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	17	16734763	16734763	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:16734763G>A	uc010vwr.1	-	3	812	c.370C>T	c.(370-372)CTG>TTG	p.L124L						SubName: Full=cDNA FLJ53570, highly similar to Keratin, type I cytoskeletal 16;																		TCCTCCTTCAGGCCTTCCATC	0.632													6	70					0	0	0.004482	0	0
FAM83G	644815	broad.mit.edu	37	17	18881077	18881077	+	Silent	SNP	T	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:18881077T>A	uc002guw.2	-	5	2069	c.1902A>T	c.(1900-1902)TCA>TCT	p.S634S	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	634										ovary(1)|central_nervous_system(1)	2						CCACTTGCTCTGAGTGGCGCC	0.667													10	58					0	0	0.008291	0	0
CCDC55	84081	broad.mit.edu	37	17	28512396	28512396	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:28512396A>G	uc002heu.2	+	7	1409	c.1381A>G	c.(1381-1383)AGG>GGG	p.R461G	CCDC55_uc002hev.2_Missense_Mutation_p.R407G|CCDC55_uc010wbl.1_Missense_Mutation_p.R407G|CCDC55_uc010wbm.1_Missense_Mutation_p.R407G|CCDC55_uc002hex.2_Missense_Mutation_p.R407G	NM_032141	NP_115517	Q9H0G5	NSRP1_HUMAN	coiled-coil domain containing 55 isoform 1	461					developmental process|nucleocytoplasmic transport|regulation of alternative nuclear mRNA splicing, via spliceosome	nuclear speck|ribonucleoprotein complex	mRNA binding|protein binding				0						CCCAAATTCTAGGGCAAAGGA	0.318													3	29					0	0	0.004672	0	0
MYO19	80179	broad.mit.edu	37	17	34856791	34856791	+	Silent	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:34856791A>C	uc010wcy.1	-	24	3248	c.2256T>G	c.(2254-2256)CTT>CTG	p.L752L	MYO19_uc002hmw.2_Silent_p.L552L|MYO19_uc010cuu.2_RNA	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	752						mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CACATTCCAGAAGCTCCAGCT	0.657													5	30					0	0	0.001168	0	0
AATF	26574	broad.mit.edu	37	17	35346599	35346600	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:35346599_35346600GG>TA	uc002hni.2	+	7	1454_1455	c.1203_1204GG>TA	c.(1201-1206)ATGGAC>ATTAAC	p.401_402MD>IN	AATF_uc002hnj.2_RNA	NM_012138	NP_036270	Q9NY61	AATF_HUMAN	apoptosis antagonizing transcription factor	401_402	RB1 and SP1 binding.			D -> C (in Ref. 2; AAD52016).	anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|negative regulation of superoxide anion generation|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to DNA damage stimulus	centrosome|focal adhesion|nucleolus	leucine zipper domain binding|sequence-specific DNA binding transcription factor activity				0		Breast(25;0.00607)				ATATTCTGATGGACAAAGAGAG	0.475													22	125					0	0	0.004672	0	0
CDC6	990	broad.mit.edu	37	17	38457848	38457849	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:38457848_38457849CC>TT	uc002huj.1	+	11	1791_1792	c.1581_1582CC>TT	c.(1579-1584)ACCCGT>ACTTGT	p.R528C		NM_001254	NP_001245	Q99741	CDC6_HUMAN	cell division cycle 6 protein	528					cell division|DNA replication|DNA replication checkpoint|M/G1 transition of mitotic cell cycle|mitosis|negative regulation of cell proliferation|negative regulation of DNA replication|positive regulation of cell cycle cytokinesis|positive regulation of chromosome segregation|regulation of cyclin-dependent protein kinase activity|regulation of mitotic anaphase|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm|spindle midzone|spindle pole	ATP binding|kinase binding|nucleoside-triphosphatase activity			ovary(2)|breast(1)	3						ACAAGGAAACCCGTTTGACAAA	0.416													8	103					0	0	0.004672	0	0
DNAJC7	7266	broad.mit.edu	37	17	40169387	40169387	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:40169387C>T	uc002hyo.2	-	1	285	c.48G>A	c.(46-48)CCG>CCA	p.P16P	DNAJC7_uc010wgb.1_5'Flank|DNAJC7_uc010wgc.1_5'UTR|DNAJC7_uc002hyp.2_5'UTR|DNAJC7_uc010cxw.2_5'Flank|NKIRAS2_uc002hyq.2_5'Flank|NKIRAS2_uc010wgd.1_5'Flank|NKIRAS2_uc002hyr.2_5'Flank|NKIRAS2_uc002hys.2_5'Flank|NKIRAS2_uc010wge.1_5'Flank|NKIRAS2_uc002hyt.2_5'Flank	NM_003315	NP_003306	Q99615	DNJC7_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 7	16					chaperone cofactor-dependent protein refolding	cytoplasm|cytoskeleton|nucleus	heat shock protein binding|unfolded protein binding			ovary(1)	1		all_cancers(22;0.00273)|Breast(137;0.00104)|all_epithelial(22;0.0305)				CGAGCAGCTCCGGCTCGGTCG	0.652													16	139					0	0	0.003163	0	0
ITGA2B	3674	broad.mit.edu	37	17	42451818	42451818	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:42451818C>T	uc002igt.1	-	29	2996	c.2964G>A	c.(2962-2964)CGG>CGA	p.R988R	ITGA2B_uc002igu.1_3'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	988	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CCTCCAAGGCCCGGAGCAGCT	0.607													12	119					0	0	0.000978	0	0
PLCD3	113026	broad.mit.edu	37	17	43194126	43194126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:43194126G>A	uc002iib.2	-	8	1400	c.1286C>T	c.(1285-1287)TCC>TTC	p.S429F		NM_133373	NP_588614	Q8N3E9	PLCD3_HUMAN	phospholipase C delta 3	429	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cleavage furrow|cytoplasm|membrane	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			breast(2)|lung(1)	3					Phosphatidylserine(DB00144)	GTTCTCCAGGGATAGGATGAC	0.647													15	83					0	0	0.008871	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48603480	48603480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:48603480G>A	uc010wmr.1	+	14	2312	c.2150G>A	c.(2149-2151)AGA>AAA	p.R717K	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	680					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CAGAAGGCCAGAGTGGGGACC	0.602													24	88					0	0	0.002299	0	0
CACNA1G	8913	broad.mit.edu	37	17	48695472	48695472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:48695472C>T	uc002irk.1	+	31	5662	c.5290C>T	c.(5290-5292)CTC>TTC	p.L1764F	CACNA1G_uc002irj.1_Missense_Mutation_p.L1730F|CACNA1G_uc002irl.1_Missense_Mutation_p.L1741F|CACNA1G_uc002irm.1_Missense_Mutation_p.L1730F|CACNA1G_uc002irn.1_Missense_Mutation_p.L1723F|CACNA1G_uc002iro.1_Missense_Mutation_p.L1730F|CACNA1G_uc002irp.1_Missense_Mutation_p.L1764F|CACNA1G_uc002irq.1_Missense_Mutation_p.L1741F|CACNA1G_uc002irr.1_Missense_Mutation_p.L1764F|CACNA1G_uc002irs.1_Missense_Mutation_p.L1753F|CACNA1G_uc002irt.1_Missense_Mutation_p.L1746F|CACNA1G_uc002irv.1_Missense_Mutation_p.L1753F|CACNA1G_uc002irw.1_Missense_Mutation_p.L1741F|CACNA1G_uc002iru.1_Missense_Mutation_p.L1730F|CACNA1G_uc002irx.1_Missense_Mutation_p.L1677F|CACNA1G_uc002iry.1_Missense_Mutation_p.L1666F|CACNA1G_uc002irz.1_Missense_Mutation_p.L1670F|CACNA1G_uc002isa.1_Missense_Mutation_p.L1643F|CACNA1G_uc002isb.1_Missense_Mutation_p.L1684F|CACNA1G_uc002isc.1_Missense_Mutation_p.L1666F|CACNA1G_uc002isd.1_Missense_Mutation_p.L1652F|CACNA1G_uc002ise.1_Missense_Mutation_p.L1632F|CACNA1G_uc002isf.1_Missense_Mutation_p.L1659F|CACNA1G_uc002isg.1_Missense_Mutation_p.L1625F|CACNA1G_uc002ish.1_Missense_Mutation_p.L1632F|CACNA1G_uc002isi.1_Missense_Mutation_p.L1620F	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1764	Helical; Name=S5 of repeat IV; (Potential).|IV.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGGCGTGGAGCTCTTTGGAGA	0.562													6	70					0	0	0.003080	0	0
OR4D1	26689	broad.mit.edu	37	17	56232643	56232643	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:56232643C>T	uc010wno.1	+	1	129	c.129C>T	c.(127-129)CTC>CTT	p.L43L	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGGGAAACCTCCTTATCATGG	0.458													21	218					0	0	0.001523	0	0
DHX40	79665	broad.mit.edu	37	17	57648001	57648001	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:57648001C>T	uc002ixn.1	+	3	550	c.403C>T	c.(403-405)CGT>TGT	p.R135C	DHX40_uc010woe.1_Intron|DHX40_uc002ixo.1_Missense_Mutation_p.R36C	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	135	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					ATACCAAGTTCGTTTTGATGA	0.284													5	54					0	0	0.000602	0	0
STRADA	92335	broad.mit.edu	37	17	61781861	61781861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:61781861G>A	uc002jbm.2	-	11	1099	c.940C>T	c.(940-942)CCT>TCT	p.P314S	STRADA_uc002jbn.2_Missense_Mutation_p.P256S|STRADA_uc002jbo.2_Missense_Mutation_p.P277S|STRADA_uc002jbp.2_Missense_Mutation_p.P277S|STRADA_uc002jbq.2_Missense_Mutation_p.P256S|STRADA_uc010wpq.1_Missense_Mutation_p.P270S|STRADA_uc010wpr.1_Missense_Mutation_p.P285S|STRADA_uc010ddw.2_Missense_Mutation_p.P285S|STRADA_uc002jbr.2_3'UTR	NM_001003787	NP_001003787	Q7RTN6	STRAA_HUMAN	STE20-related kinase adaptor alpha isoform 1	314	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|kinase binding|protein kinase activity			ovary(1)	1						GAGCGCGAAGGGCTCATGGTC	0.637													14	96					0	0	0.007413	0	0
ICAM2	3384	broad.mit.edu	37	17	62083993	62083993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:62083993G>A	uc002jdu.3	-	1	291	c.59C>T	c.(58-60)CCA>CTA	p.P20L	ICAM2_uc002jdw.3_Missense_Mutation_p.P20L|ICAM2_uc010ded.2_Missense_Mutation_p.P20L|ICAM2_uc002jdx.3_Missense_Mutation_p.P20L|ICAM2_uc002jdv.3_Missense_Mutation_p.P20L|ICAM2_uc010wpx.1_Missense_Mutation_p.P20L	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	20					cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						TGGCTTACCTGGACAGCAGAT	0.597													8	34					0	0	0.006214	0	0
LLGL2	3993	broad.mit.edu	37	17	73569591	73569591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:73569591G>A	uc002joh.2	+	21	2909	c.2755G>A	c.(2755-2757)GAG>AAG	p.E919K	LLGL2_uc002joi.2_Missense_Mutation_p.E919K|LLGL2_uc010dgg.1_Missense_Mutation_p.E919K|LLGL2_uc002joj.2_Missense_Mutation_p.E908K|LLGL2_uc010wsd.1_Missense_Mutation_p.E546K	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	919	WD 14.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			CTCGGAGTTTGAGCGCTTCTC	0.642													22	188					0	0	0.003954	0	0
MRPL38	64978	broad.mit.edu	37	17	73895042	73895042	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:73895042G>A	uc010wso.1	-	9	1257	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F	FBF1_uc002jqa.1_RNA|TRIM65_uc002jpx.2_5'Flank|MRPL38_uc002jpz.1_RNA	NM_032478	NP_115867	Q96DV4	RM38_HUMAN	mitochondrial ribosomal protein L38 precursor	344						actin cytoskeleton|mitochondrion|ribosome				pancreas(1)	1			all cancers(21;0.000154)|Epithelial(20;0.000156)|BRCA - Breast invasive adenocarcinoma(9;0.00936)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCGGCCGCACGAACTCAAACA	0.672													5	23					0	0	0.001168	0	0
PGS1	9489	broad.mit.edu	37	17	76396765	76396765	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:76396765C>T	uc002jvm.2	+	6	721	c.709C>T	c.(709-711)CTG>TTG	p.L237L	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_Intron|PGS1_uc002jvo.2_RNA|PGS1_uc002jvp.1_5'Flank	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	237	PLD phosphodiesterase 1.				phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			TAGTGCAAACCTGAGTGACTC	0.602													22	167					0	0	0.002299	0	0
DNAH17	8632	broad.mit.edu	37	17	76548857	76548857	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:76548857G>A	uc002jvv.1	-	11	1421	c.1315C>T	c.(1315-1317)CTA>TTA	p.L439L						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTTATTAGTAGAAATTCTACT	0.413													27	186					0	0	0.002096	0	0
FOXK2	3607	broad.mit.edu	37	17	80543958	80543958	+	Silent	SNP	C	G	G	rs148659399		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr17:80543958C>G	uc002kfn.2	+	7	1629	c.1458C>G	c.(1456-1458)GCC>GCG	p.A486A	FOXK2_uc002kfm.1_Silent_p.A486A|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	486					embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			CCAGTGTGGCCGGACTGGCCC	0.662													6	58					0	0	0.006214	0	0
PTPRM	5797	broad.mit.edu	37	18	8376576	8376576	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:8376576T>G	uc002knn.3	+	24	3907	c.3404T>G	c.(3403-3405)GTG>GGG	p.V1135G	PTPRM_uc010dkv.2_Missense_Mutation_p.V1148G|PTPRM_uc010wzl.1_Missense_Mutation_p.V922G	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1135	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				TCACGGAGGGTGAACATGGTG	0.572													10	59					0	0	0.006214	0	0
SEH1L	81929	broad.mit.edu	37	18	12984128	12984128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:12984128C>T	uc002krr.2	+	8	1147	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S	SEH1L_uc002krq.2_Missense_Mutation_p.P337S	NM_031216	NP_112493	Q96EE3	SEH1_HUMAN	sec13-like protein isoform 2	337					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex					0						AACCTCAAATCCTTCCCTAGG	0.413													20	77					0	0	0.008871	0	0
POTEC	388468	broad.mit.edu	37	18	14511935	14511935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:14511935C>T	uc010dln.2	-	11	2045	c.1591G>A	c.(1591-1593)GAA>AAA	p.E531K	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	531	Potential.									skin(3)	3						GCAATTTCTTCCTGCAACATG	0.358													4	15					0	0	0.000248	0	0
LAMA3	3909	broad.mit.edu	37	18	21343417	21343417	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:21343417T>C	uc002kuq.2	+	8	1198	c.1112T>C	c.(1111-1113)GTT>GCT	p.V371A	LAMA3_uc010dlv.1_Missense_Mutation_p.V371A|LAMA3_uc002kur.2_Missense_Mutation_p.V371A	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	371	Domain V.|Laminin EGF-like 2.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATCCAGATGTTGAGCGGCAG	0.443													8	91					0	0	0.003080	0	0
ASXL3	80816	broad.mit.edu	37	18	31323465	31323465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:31323465C>T	uc010dmg.1	+	12	3708	c.3653C>T	c.(3652-3654)TCA>TTA	p.S1218L	ASXL3_uc002kxq.2_Missense_Mutation_p.S925L	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1218	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAAATTGTTTCATCTACCTCT	0.373													13	52					0	0	0.001855	0	0
MAPK4	5596	broad.mit.edu	37	18	48190559	48190559	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr18:48190559C>T	uc002lev.2	+	2	1231	c.231C>T	c.(229-231)ATC>ATT	p.I77I	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.I77I	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	77	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		ACGACAACATCGTCAAAGTGT	0.582													12	62					0	0	0.001368	0	0
LMNB2	84823	broad.mit.edu	37	19	2433919	2433919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:2433919G>A	uc002lvy.2	-	8	1414	c.1327C>T	c.(1327-1329)CAC>TAC	p.H443Y	LMNB2_uc002lwa.1_Missense_Mutation_p.H463Y	NM_032737	NP_116126	Q03252	LMNB2_HUMAN	lamin B2	443	Tail.			LEVEEPLGSGPSVLGTGTGGSGGFHLAQQASASGSVS -> WRWRSPWQRPKRPGHGHGWQRWLPPGPAGLGLGQRH (in Ref. 5; AAA80979).		nuclear inner membrane	structural molecule activity			large_intestine(1)|ovary(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGCCAGGTGGAAGCCACCG	0.677													45	389					0	0	0.003214	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456640	5456640	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:5456640C>G	uc002mca.3	+	1	1215	c.1138C>G	c.(1138-1140)CGG>GGG	p.R380G		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	380	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		ACCGGGCCACCGGCCCCCCAT	0.672													7	65					0	0	0.001984	0	0
PNPLA6	10908	broad.mit.edu	37	19	7626392	7626392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:7626392C>T	uc010xjq.1	+	34	4267	c.4072C>T	c.(4072-4074)CTC>TTC	p.L1358F	PNPLA6_uc002mgq.1_Missense_Mutation_p.L1310F|PNPLA6_uc010xjp.1_Missense_Mutation_p.L1283F|PNPLA6_uc002mgr.1_Missense_Mutation_p.L1310F|PNPLA6_uc002mgs.2_Missense_Mutation_p.L1348F|PNPLA6_uc002mgt.1_RNA	NM_006702	NP_006693	Q8IY17	PLPL6_HUMAN	neuropathy target esterase isoform b	1349	Cytoplasmic (Potential).				cell death|lipid catabolic process|phosphatidylcholine metabolic process	endoplasmic reticulum membrane|integral to membrane	lysophospholipase activity			ovary(3)	3						GAAGTCGATTCTCCGGCAACG	0.652													5	20					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9063015	9063015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:9063015C>T	uc002mkp.2	-	3	24635	c.24431G>A	c.(24430-24432)GGA>GAA	p.G8144E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8146	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGGCACTCCAGAAAGGAC	0.542													4	22					0	0	0.000248	0	0
MUC16	94025	broad.mit.edu	37	19	9073638	9073638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:9073638C>T	uc002mkp.2	-	3	14012	c.13808G>A	c.(13807-13809)CGA>CAA	p.R4603Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4605	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding	p.R4603Q(1)|p.R236Q(1)		lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTCTCTTTTCGTCCAGCAGT	0.502													4	11					0	0	0.000602	0	0
MUC16	94025	broad.mit.edu	37	19	9087174	9087174	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:9087174C>T	uc002mkp.2	-	1	4845	c.4641G>A	c.(4639-4641)GTG>GTA	p.V1547V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1547	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGTTCAATCACACTGGTCC	0.488													8	78					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9088962	9088962	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:9088962G>A	uc002mkp.2	-	1	3057	c.2853C>T	c.(2851-2853)ACC>ACT	p.T951T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	951	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTCTCTATTGGTCTGTGACA	0.483													7	53					0	0	0.001984	0	0
PRDX2	7001	broad.mit.edu	37	19	12911973	12911973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:12911973C>T	uc002mvd.2	-	2	253	c.103G>A	c.(103-105)GGG>AGG	p.G35R	PRDX2_uc002mve.1_Missense_Mutation_p.G35R	NM_005809	NP_005800	P32119	PRDX2_HUMAN	peroxiredoxin 2 isoform a	35	Thioredoxin.				anti-apoptosis|cell redox homeostasis|hydrogen peroxide catabolic process|removal of superoxide radicals		thioredoxin peroxidase activity				0						CGGCGCTCACCTTTGTAGTCC	0.642													6	41					0	0	0.001168	0	0
C19orf57	79173	broad.mit.edu	37	19	14000264	14000264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:14000264C>T	uc002mxl.1	-	6	1464	c.1405G>A	c.(1405-1407)GAC>AAC	p.D469N	C19orf57_uc002mxk.1_Missense_Mutation_p.D351N|C19orf57_uc002mxm.1_Intron	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	469					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			CCCTCGAGGTCTCGTTCGAGG	0.602													21	157					0	0	0.001523	0	0
RASAL3	64926	broad.mit.edu	37	19	15562672	15562672	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:15562672C>T	uc002nbe.2	-	18	3056	c.2970G>A	c.(2968-2970)AGG>AGA	p.R990R	WIZ_uc002nbb.3_5'Flank|RASAL3_uc002nbd.2_3'UTR|RASAL3_uc010eaa.1_Silent_p.R404R	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	990					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						ACCCCCGCGTCCTTGGAGAAA	0.612													19	112					0	0	0.007413	0	0
MYO9B	4650	broad.mit.edu	37	19	17283623	17283623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:17283623G>A	uc010eak.2	+	13	2143	c.1991G>A	c.(1990-1992)CGG>CAG	p.R664Q	MYO9B_uc002nfi.2_Missense_Mutation_p.R664Q|MYO9B_uc002nfj.1_Missense_Mutation_p.R664Q	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1	664	Myosin head-like.				actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						GCCCTGCTGCGGGGCAGTGAC	0.657													20	123					0	0	0.001523	0	0
NPHS1	4868	broad.mit.edu	37	19	36332637	36332637	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:36332637T>C	uc002oby.2	-	20	2795	c.2795A>G	c.(2794-2796)AAC>AGC	p.N932S	NPHS1_uc010eem.1_5'Flank	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	932	Ig-like C2-type 8.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAGTTGAATGTTGGTTTGGTC	0.597													20	73					0	0	0.003330	0	0
ZNF569	148266	broad.mit.edu	37	19	37905009	37905009	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:37905009G>T	uc002ogi.2	-	6	1109	c.551C>A	c.(550-552)ACC>AAC	p.T184N	ZNF569_uc002ogh.2_Missense_Mutation_p.T25N|ZNF569_uc002ogj.2_Missense_Mutation_p.T208N	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	184					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CTTAAAGGGGGTAATGACAAA	0.373													6	28					0.00116845	0.00160284	0.001168	1	0
SIPA1L3	23094	broad.mit.edu	37	19	38643563	38643563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:38643563G>A	uc002ohk.2	+	13	4126	c.3617G>A	c.(3616-3618)GGC>GAC	p.G1206D		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1206					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TCCTCTTCCGGCGGCCTGACC	0.667													12	89					0	0	0.001368	0	0
SELV	348303	broad.mit.edu	37	19	40009732	40009732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:40009732G>A	uc010xvc.1	+	6	1085	c.985G>A	c.(985-987)GAG>AAG	p.E329K		NM_182704	NP_874363	P59797	SELV_HUMAN	selenoprotein V	329					cell redox homeostasis		selenium binding				0	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;8.61e-26)|all cancers(26;2.76e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CTTTGTGAACGAGTCCAGGCT	0.592													8	74					0	0	0.003080	0	0
EXOSC5	56915	broad.mit.edu	37	19	41898821	41898821	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:41898821G>A	uc002oqo.2	-	2	236	c.213C>T	c.(211-213)TTC>TTT	p.F71F	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Intron	NM_020158	NP_064543	Q9NQT4	EXOS5_HUMAN	exosome component Rrp46	71					DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|protein binding|RNA binding				0						TGGCCTTGTTGAAAATCTCTT	0.572													13	88					0	0	0.002450	0	0
PSG6	5675	broad.mit.edu	37	19	43414918	43414918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:43414918C>T	uc002ovj.1	-	3	572	c.520G>A	c.(520-522)GAT>AAT	p.D174N	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.D181N|PSG6_uc002ovi.2_Missense_Mutation_p.D175N|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.D174N|PSG6_uc002ovg.1_Missense_Mutation_p.D174N	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	174	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TAGCTTGCATCCGGAGTCTCA	0.537													34	125					0	0	0.002096	0	0
PSG5	5673	broad.mit.edu	37	19	43689221	43689221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:43689221C>T	uc002ovu.2	-	2	274	c.143G>A	c.(142-144)GGG>GAG	p.G48E	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'UTR|PSG5_uc002ovx.2_Missense_Mutation_p.G48E|PSG5_uc002ovv.2_Missense_Mutation_p.G48E|PSG5_uc002ovw.2_Missense_Mutation_p.G48E	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	48	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				AACATCCTTCCCCTCGGAAAC	0.463													33	167					0	0	0.002096	0	0
PSG4	5672	broad.mit.edu	37	19	43708311	43708311	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:43708311G>T	uc002ovy.2	-	2	259	c.157C>A	c.(157-159)CTA>ATA	p.L53I	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.L53I|PSG4_uc002ovz.2_Missense_Mutation_p.L53I	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	53	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TGGACAAGTAGAAGAACATCC	0.458													24	210					9.57634e-11	1.33488e-10	0.003330	1	0
ZNF576	79177	broad.mit.edu	37	19	44103204	44103204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:44103204G>A	uc002owy.2	+	3	516	c.307G>A	c.(307-309)GTT>ATT	p.V103I	IRGQ_uc010eiv.2_5'Flank|ZNF576_uc002owz.2_Missense_Mutation_p.V103I|SRRM5_uc002oxb.2_Intron	NM_024327	NP_077303	Q9H609	ZN576_HUMAN	zinc finger protein 576	103					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0199)				CACCCTGCCGGTTGCAACCAC	0.632													10	116					0	0	0.008291	0	0
HIF3A	64344	broad.mit.edu	37	19	46832553	46832553	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:46832553G>A	uc002peh.2	+	12	1559	c.1530G>A	c.(1528-1530)AGG>AGA	p.R510R	HIF3A_uc002peg.3_Silent_p.R510R|HIF3A_uc002pei.3_Silent_p.R454R|HIF3A_uc002pej.1_Intron|HIF3A_uc002pek.2_Silent_p.R454R|HIF3A_uc010xxy.1_Silent_p.R441R|HIF3A_uc002pel.2_Silent_p.R508R|HIF3A_uc010xxz.1_Silent_p.R459R	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	510	ODD.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		AGCTACCCAGGGCCTACCACA	0.652													16	105					0	0	0.004007	0	0
SPHK2	56848	broad.mit.edu	37	19	49132198	49132198	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:49132198A>C	uc002pjr.2	+	7	1499	c.1133A>C	c.(1132-1134)TAC>TCC	p.Y378S	SPHK2_uc010xzt.1_Missense_Mutation_p.Y319S|SPHK2_uc002pjs.2_Missense_Mutation_p.Y378S|SPHK2_uc002pjt.2_Missense_Mutation_p.Y172S|SPHK2_uc002pju.2_Intron|SPHK2_uc002pjv.2_Missense_Mutation_p.Y342S|SPHK2_uc002pjw.2_Missense_Mutation_p.Y440S	NM_020126	NP_064511	Q9NRA0	SPHK2_HUMAN	sphingosine kinase 2	378					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cell proliferation|sphinganine-1-phosphate biosynthetic process	cytosol|lysosomal membrane|membrane fraction	ATP binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|Ras GTPase binding|sphinganine kinase activity			lung(1)	1		all_lung(116;0.000125)|Lung NSC(112;0.000202)|all_epithelial(76;0.000283)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		CGCCTCTCCTACCTCCCCGCC	0.622													4	57					0	0	0.004007	0	0
NUCB1	4924	broad.mit.edu	37	19	49409139	49409139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:49409139C>T	uc002plb.3	+	4	445	c.373C>T	c.(373-375)CCC>TCC	p.P125S	NUCB1_uc002pla.2_Missense_Mutation_p.P125S|NUCB1_uc002plc.2_Missense_Mutation_p.P125S	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	125						ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		CGAGCAGGATCCCAGTGAGCA	0.667													6	31					0	0	0.001168	0	0
RUVBL2	10856	broad.mit.edu	37	19	49514511	49514512	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:49514511_49514512CC>TT	uc002plr.1	+	11	958_959	c.945_946CC>TT	c.(943-948)GCCCTG>GCTTTG	p.315_316AL>AL	RUVBL2_uc002plq.1_Silent_p.270_271AL>AL|RUVBL2_uc002pls.1_RNA|RUVBL2_uc010emn.1_Silent_p.270_271AL>AL|RUVBL2_uc010yac.1_Silent_p.270_271AL>AL	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2	315_316					cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		TCAACCGGGCCCTGGAGAGTGA	0.614													16	57					0	0	0.004672	0	0
MYBPC2	4606	broad.mit.edu	37	19	50944201	50944201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:50944201G>A	uc002psf.2	+	8	688	c.637G>A	c.(637-639)GAG>AAG	p.E213K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	213					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CATCCCCCCGGAGATTTGGGA	0.577													14	32					0	0	0.002450	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51920492	51920492	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:51920492G>C	uc002pwo.2	-	2	881	c.265C>G	c.(265-267)CGA>GGA	p.R89G	SIGLEC10_uc002pwp.2_Missense_Mutation_p.R89G|SIGLEC10_uc002pwq.2_Missense_Mutation_p.R89G|SIGLEC10_uc002pwr.2_Missense_Mutation_p.R89G|SIGLEC10_uc010ycy.1_Missense_Mutation_p.R89G|SIGLEC10_uc010ycz.1_Missense_Mutation_p.R89G|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Missense_Mutation_p.R73G	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	89	Extracellular (Potential).|Ig-like V-type.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		AGCTGGAATCGGCCCCGGGTG	0.567													16	106					0	0	0.004007	0	0
ZNF320	162967	broad.mit.edu	37	19	53384496	53384496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:53384496G>A	uc002qag.2	-	4	1074	c.883C>T	c.(883-885)CAT>TAT	p.H295Y	ZNF320_uc010eqh.1_5'Flank|ZNF320_uc010eqi.1_Intron|ZNF320_uc002qah.2_Missense_Mutation_p.H241Y|ZNF320_uc002qai.2_Missense_Mutation_p.H295Y	NM_207333	NP_997216	A2RRD8	ZN320_HUMAN	zinc finger protein 320	295	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0534)		TCTGCAGTATGAACTGCCTTA	0.428													4	38					0	0	0.000602	0	0
MIR527	574497	broad.mit.edu	37	19	54257293	54257293	+	RNA	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:54257293G>A	hsa-mir-527|MI0003179	+			c.22G>A			MIR516A1_hsa-mir-516a-1|MI0003180_5'Flank																	0						GACTGCAAAGGGAAGCCCTTT	0.418													17	93					0	0	0.003330	0	0
VSTM1	284415	broad.mit.edu	37	19	54561969	54561969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:54561969C>T	uc002qcw.3	-	2	228	c.52G>A	c.(52-54)GAA>AAA	p.E18K	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Missense_Mutation_p.E18K	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	18						integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		TTCTCATCTTCGTAGCCCAGA	0.403													13	69					0	0	0.001368	0	0
LILRA5	353514	broad.mit.edu	37	19	54823298	54823298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:54823298C>T	uc002qfe.2	-	4	365	c.245G>A	c.(244-246)GGA>GAA	p.G82E	LILRA5_uc002qff.2_Missense_Mutation_p.G70E|LILRA5_uc010yev.1_Missense_Mutation_p.G82E|LILRA5_uc010yew.1_Missense_Mutation_p.G70E|LILRA5_uc002qfh.1_Missense_Mutation_p.G70E|LILRA5_uc002qfg.1_Missense_Mutation_p.G82E	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	82	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TTCTGGGCTTCCCTCTTTAAC	0.597													21	115					0	0	0.001523	0	0
LILRB1	10859	broad.mit.edu	37	19	55148324	55148324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:55148324C>T	uc002qgj.2	+	16	2288	c.1948C>T	c.(1948-1950)CAC>TAC	p.H650Y	LILRB1_uc002qgl.2_Missense_Mutation_p.H651Y|LILRB1_uc002qgk.2_Missense_Mutation_p.H651Y|LILRB1_uc002qgm.2_Missense_Mutation_p.H652Y|LILRB1_uc010erq.2_Missense_Mutation_p.H634Y|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	650	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		TCTGGCCATCCACTAGCCCAG	0.647										HNSCC(37;0.09)			9	46					0	0	0.000978	0	0
FCAR	2204	broad.mit.edu	37	19	55396884	55396884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:55396884G>A	uc002qhr.1	+	3	505	c.308G>A	c.(307-309)AGG>AAG	p.R103K	FCAR_uc002qhq.2_Missense_Mutation_p.R103K|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Missense_Mutation_p.R76K|FCAR_uc010esi.1_Missense_Mutation_p.R76K|FCAR_uc002qhu.1_Missense_Mutation_p.R103K|FCAR_uc002qhv.1_Missense_Mutation_p.R103K|FCAR_uc002qhw.1_Missense_Mutation_p.R91K|FCAR_uc002qhx.1_Missense_Mutation_p.R91K|FCAR_uc002qhy.1_Missense_Mutation_p.R91K|FCAR_uc002qhz.1_Missense_Mutation_p.R91K|FCAR_uc002qia.1_Intron	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	103	Extracellular (Potential).|Ig-like C2-type 1.				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		TGCCAATATAGGATAGGGCAC	0.488													14	69					0	0	0.002450	0	0
NLRP7	199713	broad.mit.edu	37	19	55451638	55451638	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:55451638C>T	uc002qih.3	-	4	625	c.549G>A	c.(547-549)GGG>GGA	p.G183G	NLRP7_uc002qig.3_Silent_p.G183G|NLRP7_uc002qii.3_Silent_p.G183G|NLRP7_uc010esk.2_Silent_p.G183G|NLRP7_uc010esl.2_Silent_p.G211G	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	183	NACHT.|ATP (Potential).						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCGTGGTTTTCCCCACGCCTG	0.562													20	143					0	0	0.007413	0	0
ISOC2	79763	broad.mit.edu	37	19	55967743	55967743	+	Silent	SNP	G	A	A	rs11555785	by1000genomes	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr19:55967743G>A	uc002qlb.2	-	2	285	c.111C>T	c.(109-111)ATC>ATT	p.I37I	ISOC2_uc002qla.2_Silent_p.I37I|ISOC2_uc002qlc.2_Silent_p.I37I	NM_001136201	NP_001129673	Q96AB3	ISOC2_HUMAN	isochorismatase domain containing 2 isoform 1	37					protein destabilization	mitochondrion|nucleus	catalytic activity|protein binding			ovary(1)	1	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0535)		CCACTGAGACGATCTGTGGGA	0.398													19	107					0	0	0.007413	0	0
GREB1	9687	broad.mit.edu	37	2	11706713	11706713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:11706713G>A	uc002rbk.1	+	4	685	c.385G>A	c.(385-387)GAC>AAC	p.D129N	GREB1_uc002rbl.2_Missense_Mutation_p.D129N|GREB1_uc002rbm.2_Missense_Mutation_p.D19N|GREB1_uc002rbn.1_Missense_Mutation_p.D129N	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	129						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CAGCCTGCCGGACCATCTCCT	0.587													8	105					0	0	0.004482	0	0
KCNS3	3790	broad.mit.edu	37	2	18112296	18112296	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:18112296C>T	uc002rcv.2	+	3	472	c.21C>T	c.(19-21)TTC>TTT	p.F7F	KCNS3_uc002rcw.2_Silent_p.F7F	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	7	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GTGAGTTTTTCCATCGCCCTG	0.527													7	31					0	0	0.001984	0	0
APOB	338	broad.mit.edu	37	2	21228131	21228131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:21228131G>A	uc002red.2	-	26	11737	c.11609C>T	c.(11608-11610)TCT>TTT	p.S3870F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3870					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGCAGGTACAGAGAACTTAAT	0.473													20	141					0	0	0.008871	0	0
SLC5A6	8884	broad.mit.edu	37	2	27428297	27428297	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:27428297T>C	uc002rjd.2	-	7	1046	c.655A>G	c.(655-657)ATC>GTC	p.I219V	SLC5A6_uc010eyv.1_Missense_Mutation_p.I219V	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	219	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	GACCCCACAATGATAACTGCC	0.592													24	131					0	0	0.003954	0	0
CAPN13	92291	broad.mit.edu	37	2	30954239	30954239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:30954239C>T	uc002rnn.2	-	20	2130	c.1954G>A	c.(1954-1956)GGA>AGA	p.G652R	CAPN13_uc002rnm.2_RNA	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	652	EF-hand 2.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AGTCCTTTTCCATCCTTAGAG	0.567													5	25					0	0	0.000602	0	0
THADA	63892	broad.mit.edu	37	2	43519316	43519317	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:43519316_43519317GG>AA	uc002rsw.3	-	33	5215_5216	c.4863_4864CC>TT	c.(4861-4866)CCCCAG>CCTTAG	p.Q1622*	THADA_uc010far.2_Nonsense_Mutation_p.Q817*|THADA_uc002rsx.3_Nonsense_Mutation_p.Q1622*|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1622							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TGCTCCGTCTGGGGAAGCCACT	0.475													28	385					0	0	0.004672	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48898778	48898778	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:48898778C>T	uc010yol.1	+	7	3306	c.3259C>T	c.(3259-3261)CTG>TTG	p.L1087L	STON1-GTF2A1L_uc002rwp.1_Silent_p.L1134L|GTF2A1L_uc002rws.1_Silent_p.L430L|GTF2A1L_uc010yom.1_Silent_p.L396L|GTF2A1L_uc002rwt.2_Silent_p.L430L	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	1087					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGTGCCAGACCTGTTTGACAC	0.338													14	67					0	0	0.004007	0	0
NRXN1	9378	broad.mit.edu	37	2	50779744	50779744	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:50779744G>A	uc010fbq.2	-	9	3337	c.1860C>T	c.(1858-1860)TTC>TTT	p.F620F	NRXN1_uc002rxb.3_Silent_p.F252F|NRXN1_uc002rxe.3_Silent_p.F580F|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	182	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CGTCTCTCTGGAAGTCCACAT	0.453													17	94					0	0	0.007413	0	0
TSPYL6	388951	broad.mit.edu	37	2	54482630	54482630	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:54482630T>A	uc002rxr.2	-	1	780	c.659A>T	c.(658-660)GAC>GTC	p.D220V	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	220					nucleosome assembly	nucleus					0						GAGCGCCCTGTCAGCCTCTGC	0.622													6	77					0	0	0.001168	0	0
CCDC88A	55704	broad.mit.edu	37	2	55544901	55544901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:55544901G>A	uc002ryv.2	-	20	4240	c.3398C>T	c.(3397-3399)TCC>TTC	p.S1133F	CCDC88A_uc010yoz.1_Missense_Mutation_p.S1134F|CCDC88A_uc010ypa.1_Missense_Mutation_p.S1133F|CCDC88A_uc002ryu.2_Missense_Mutation_p.S416F|CCDC88A_uc002rys.2_Missense_Mutation_p.S119F|CCDC88A_uc002ryw.2_Missense_Mutation_p.S417F|CCDC88A_uc010fby.1_Missense_Mutation_p.S13F	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1134	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						ATTTTCTAAGGAAGACTGCTG	0.353													6	34					0	0	0.001984	0	0
PCYOX1	51449	broad.mit.edu	37	2	70503997	70503997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:70503997C>T	uc002sgn.3	+	6	1057	c.991C>T	c.(991-993)CCT>TCT	p.P331S	PCYOX1_uc010fdo.2_Missense_Mutation_p.P254S|PCYOX1_uc010yqu.1_Missense_Mutation_p.P313S	NM_016297	NP_057381	Q9UHG3	PCYOX_HUMAN	prenylcysteine oxidase 1 precursor	331					prenylated protein catabolic process	lysosome|very-low-density lipoprotein particle	prenylcysteine oxidase activity			central_nervous_system(1)	1						CAACTTTGATCCTCCAATTGA	0.368													4	38					0	0	0.000602	0	0
DYSF	8291	broad.mit.edu	37	2	71740985	71740985	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:71740985G>A	uc002sie.2	+	6	973	c.597G>A	c.(595-597)GGG>GGA	p.G199G	DYSF_uc010feg.2_Silent_p.G230G|DYSF_uc010feh.2_Silent_p.G199G|DYSF_uc002sig.3_Silent_p.G199G|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.G199G|DYSF_uc010fef.2_Silent_p.G230G|DYSF_uc010fei.2_Silent_p.G230G|DYSF_uc010fek.2_Silent_p.G231G|DYSF_uc010fej.2_Silent_p.G200G|DYSF_uc010fel.2_Silent_p.G200G|DYSF_uc010feo.2_Silent_p.G231G|DYSF_uc010fem.2_Silent_p.G200G|DYSF_uc010fen.2_Silent_p.G231G|DYSF_uc002sif.2_Silent_p.G200G	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	199	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACTACCCCGGGATCAAAAGAA	0.587													4	49					0	0	0.000602	0	0
SFXN5	94097	broad.mit.edu	37	2	73298765	73298765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:73298765G>A	uc002siq.2	-	1	201	c.70C>T	c.(70-72)CCT>TCT	p.P24S	SFXN5_uc010fet.2_Missense_Mutation_p.P24S|SFXN5_uc002sir.1_5'Flank	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	24					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						AGTTGGAAAGGAGGTGCATCG	0.657													4	29					0	0	0.000602	0	0
GGCX	2677	broad.mit.edu	37	2	85778939	85778939	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:85778939G>A	uc002sps.2	-	11	1711	c.1605C>T	c.(1603-1605)TTC>TTT	p.F535F	GGCX_uc010yss.1_Silent_p.F351F|GGCX_uc010yst.1_Silent_p.F478F	NM_000821	NP_000812	P38435	VKGC_HUMAN	gamma-glutamyl carboxylase isoform 1	535	Lumenal (Potential).				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification	endoplasmic reticulum membrane|integral to membrane|membrane fraction	gamma-glutamyl carboxylase activity			ovary(1)	1					Anisindione(DB01125)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Drotrecogin alfa(DB00055)|L-Glutamic Acid(DB00142)|Menadione(DB00170)|Phytonadione(DB01022)	CCATACCAGGGAAATCTGCAA	0.512											OREG0014747	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	123					0	0	0.006122	0	0
USP39	10713	broad.mit.edu	37	2	85866352	85866352	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:85866352C>T	uc002sqe.2	+	9	1158	c.1122C>T	c.(1120-1122)CTC>CTT	p.L374L	USP39_uc002sqb.2_Silent_p.L105L|USP39_uc010ysu.1_Silent_p.L296L|USP39_uc010ysv.1_Silent_p.L271L|USP39_uc010fgn.1_Silent_p.L374L|USP39_uc002sqf.2_Silent_p.L374L|USP39_uc002sqg.2_Silent_p.L374L|USP39_uc010fgo.2_Silent_p.L374L	NM_006590	NP_006581	Q53GS9	SNUT2_HUMAN	ubiquitin specific protease 39	374					spliceosome assembly|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)	1						AGCAGTTGCTCCATAATGACG	0.478													5	31					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	2	90139548	90139548	+	RNA	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:90139548A>G	uc010fhm.2	+	18		c.2341A>G								Parts of antibodies, mostly variable regions.																		AGATTTTGCAACTTATTACTG	0.512													3	11					0	0	0.001168	0	0
NEURL3	93082	broad.mit.edu	37	2	97166202	97166202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:97166202C>T	uc010yuo.1	-	2	559	c.488G>A	c.(487-489)GGG>GAG	p.G163E	NEURL3_uc010fhx.2_RNA|NEURL3_uc002swc.2_RNA|NEURL3_uc010yup.1_Missense_Mutation_p.G163E					SubName: Full=cDNA FLJ54814;												0						CTTAGTGGTCCCATACACGTC	0.706													4	20					0	0	0.000248	0	0
COX5B	1329	broad.mit.edu	37	2	98264520	98264521	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:98264520_98264521CC>TT	uc002sya.2	+	4	368_369	c.339_340CC>TT	c.(337-342)TGCCCC>TGTTCC	p.P114S		NM_001862	NP_001853	P10606	COX5B_HUMAN	cytochrome c oxidase subunit Vb precursor	114					respiratory electron transport chain|respiratory gaseous exchange	mitochondrial inner membrane	cytochrome-c oxidase activity|metal ion binding				0						CCCAGCGATGCCCCCGCTGTGG	0.51													9	47					0	0	0.004672	0	0
PSD4	23550	broad.mit.edu	37	2	113950695	113950695	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:113950695C>T	uc002tjc.2	+	7	2092	c.1909C>T	c.(1909-1911)CGA>TGA	p.R637*	PSD4_uc002tjd.2_Nonsense_Mutation_p.R258*|PSD4_uc002tje.2_Nonsense_Mutation_p.R608*|PSD4_uc002tjf.2_Nonsense_Mutation_p.R258*	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	637	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GAGTCTGGACCGAGCCCTCCG	0.597													7	54					0	0	0.003080	0	0
NCKAP5	344148	broad.mit.edu	37	2	133543088	133543088	+	Silent	SNP	C	T	T	rs142356779		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:133543088C>T	uc002ttp.2	-	14	1670	c.1296G>A	c.(1294-1296)TCG>TCA	p.S432S	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	432							protein binding				0						TTCCTTCATTCGAGTTCATGC	0.463													6	40					0	0	0.001168	0	0
NEB	4703	broad.mit.edu	37	2	152534274	152534274	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:152534274C>T	uc010fnx.2	-	34	3770	c.3579G>A	c.(3577-3579)AAG>AAA	p.K1193K		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1193	Nebulin 29.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGTAGTCTTCCTTGTAGACGT	0.458													15	149					0	0	0.004990	0	0
ABCA12	26154	broad.mit.edu	37	2	215884507	215884507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:215884507C>T	uc002vew.2	-	12	1521	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q	ABCA12_uc002vev.2_Missense_Mutation_p.R116Q|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	434					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GGTCAAGTTTCGAAGTTGAGA	0.363													4	26					0	0	0.000602	0	0
INPP5D	3635	broad.mit.edu	37	2	234078776	234078776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:234078776G>A	uc010zmo.1	+	14	1910	c.1757G>A	c.(1756-1758)GGG>GAG	p.G586E	INPP5D_uc010zmp.1_Missense_Mutation_p.G585E	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	586					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TTCTGGTTTGGGGATCTTAAC	0.473													8	66					0	0	0.003080	0	0
IQCA1	79781	broad.mit.edu	37	2	237374155	237374155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:237374155C>T	uc002vvz.1	-	6	1101	c.919G>A	c.(919-921)GAA>AAA	p.E307K	IQCA1_uc002vwb.2_Missense_Mutation_p.E314K|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E307K	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	307							ATP binding			ovary(1)	1						CACCTGCATTCGATGAACCAA	0.428													5	16					0	0	0.001984	0	0
D2HGDH	728294	broad.mit.edu	37	2	242684288	242684288	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr2:242684288C>T	uc002wce.1	+	6	1022	c.849C>T	c.(847-849)TTC>TTT	p.F283F	D2HGDH_uc010zpc.1_RNA|D2HGDH_uc010fzq.1_Silent_p.F149F|D2HGDH_uc002wcg.1_RNA	NM_152783	NP_689996	Q8N465	D2HDH_HUMAN	D-2-hydroxyglutarate dehydrogenase precursor	283					2-oxoglutarate metabolic process|cellular protein metabolic process|response to cobalt ion|response to manganese ion|response to zinc ion	mitochondrial matrix	(R)-2-hydroxyglutarate dehydrogenase activity|flavin adenine dinucleotide binding|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;4.59e-33)|all cancers(36;9.89e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.89e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0833)		ACGTGGCTTTCCTCGGTGGGC	0.597													26	186					0	0	0.004656	0	0
ADAM33	80332	broad.mit.edu	37	20	3652877	3652877	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:3652877G>A	uc002wit.2	-	14	1588	c.1501C>T	c.(1501-1503)CTA>TTA	p.L501L	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Silent_p.L501L|ADAM33_uc002wis.2_Silent_p.L23L|ADAM33_uc002wiu.2_Silent_p.L501L|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	501	Extracellular (Potential).|Disintegrin.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						CCGTCCAGTAGGTAAACGTCT	0.662													16	139					0	0	0.006122	0	0
CENPB	1059	broad.mit.edu	37	20	3766206	3766206	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:3766206G>A	uc002wjk.2	-	1	1132	c.925C>T	c.(925-927)CTG>TTG	p.L309L	CDC25B_uc010zqk.1_5'Flank|CDC25B_uc010zql.1_5'Flank|CDC25B_uc010zqm.1_5'Flank	NM_001810	NP_001801	P07199	CENPB_HUMAN	centromere protein B	309					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|satellite DNA binding				0						ACATGCCGCAGGCCCGAGGTG	0.662													3	20					0	0	0.000248	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													3	5					0	0	0.004672	0	0
RRBP1	6238	broad.mit.edu	37	20	17602341	17602341	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:17602341G>A	uc002wpv.1	-	16	2373	c.2019C>T	c.(2017-2019)CCC>CCT	p.P673P	RRBP1_uc010zrp.1_5'Flank|RRBP1_uc002wpt.1_Silent_p.P43P|RRBP1_uc002wpu.2_Silent_p.P447P|RRBP1_uc002wpw.1_Silent_p.P673P|RRBP1_uc010gcl.1_Silent_p.P447P|RRBP1_uc010gcm.1_Silent_p.P126P	NM_001042576	NP_001036041	Q9P2E9	RRBP1_HUMAN	ribosome binding protein 1	1106	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						TTACCGAGGAGGGCTCCGCGG	0.597													3	33					0	0	0.004672	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18142719	18142720	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:18142719_18142720CC>TT	uc002wqj.2	+	6	1560_1561	c.938_939CC>TT	c.(937-939)TCC>TTT	p.S313F	CSRP2BP_uc002wqk.2_Missense_Mutation_p.S185F|CSRP2BP_uc010zru.1_Missense_Mutation_p.S184F	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	313					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						ATTGACTTTTCCTCCTTGAGCT	0.53													6	66					0	0	0.004672	0	0
FRG1B	284802	broad.mit.edu	37	20	29625985	29625985	+	Splice_Site	SNP	G	A	A	rs79368216	by1000genomes	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:29625985G>A	uc010ztl.1	+	2	170	c.138_splice	c.e2+1	p.N46_splice	FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						CTTTCAAAATGTAAGTGCTGT	0.323													8	37					0	0	0.008291	0	0
DEFB118	117285	broad.mit.edu	37	20	29956462	29956462	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:29956462C>T	uc002wvr.2	+	1	35	c.9C>T	c.(7-9)CTC>CTT	p.L3L		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	3					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CCATGAAACTCCTGCTGCTGG	0.493													9	86					0	0	0.006214	0	0
SUN5	140732	broad.mit.edu	37	20	31572976	31572976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:31572976G>A	uc002wyi.2	-	12	1006	c.913C>T	c.(913-915)CCC>TCC	p.P305S		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	305	SUN.				spermatogenesis					skin(1)	1						TCCTCCTTGGGGGAGCCCTCC	0.498													13	79					0	0	0.003163	0	0
BPIL3	128859	broad.mit.edu	37	20	31620862	31620862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:31620862G>A	uc010zuc.1	+	2	170	c.170G>A	c.(169-171)GGG>GAG	p.G57E	BPIL3_uc010zud.1_5'UTR	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	57						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						AAACAGCCAGGGATGAAACCT	0.562													14	84					0	0	0.003163	0	0
GDF5	8200	broad.mit.edu	37	20	34021881	34021881	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:34021881C>T	uc010gfc.1	-	2	1573	c.1332G>A	c.(1330-1332)ACG>ACA	p.T444T	uc002xcj.2_Missense_Mutation_p.R98C|GDF5_uc002xck.1_Silent_p.T444T|GDF5_uc010zvc.1_Silent_p.T444T	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	444					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			CTGCATGATTCGTGGGCTCCA	0.612													12	56					0	0	0.000978	0	0
SLA2	84174	broad.mit.edu	37	20	35242766	35242766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:35242766C>T	uc002xfv.2	-	7	969	c.607G>A	c.(607-609)GAT>AAT	p.D203N	SLA2_uc002xfu.2_Missense_Mutation_p.G186E	NM_032214	NP_115590	Q9H6Q3	SLAP2_HUMAN	Src-like-adaptor 2 isoform a	203	SLA C-terminal.				antigen receptor-mediated signaling pathway|B cell mediated immunity|intracellular receptor mediated signaling pathway|negative regulation of B cell activation|negative regulation of calcium-mediated signaling|negative regulation of transcription from RNA polymerase II promoter|T cell activation	cytoplasmic membrane-bounded vesicle|endosome membrane|plasma membrane	protein N-terminus binding|SH3/SH2 adaptor activity				0	Breast(12;0.114)	Myeloproliferative disorder(115;0.00878)				AGGGGTATATCCTTGCCAGGG	0.567													20	128					0	0	0.007413	0	0
RALGAPB	57148	broad.mit.edu	37	20	37150215	37150215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:37150215C>T	uc002xiw.2	+	10	1750	c.1493C>T	c.(1492-1494)CCT>CTT	p.P498L	RALGAPB_uc010zvz.1_Intron|RALGAPB_uc002xix.2_Missense_Mutation_p.P498L|RALGAPB_uc002xiy.1_Missense_Mutation_p.P498L|RALGAPB_uc002xiz.2_Missense_Mutation_p.P276L|RALGAPB_uc002xja.1_Missense_Mutation_p.P225L	NM_020336	NP_065069	Q86X10	RLGPB_HUMAN	Ral GTPase activating protein, beta subunit	498					activation of Ral GTPase activity	intracellular	protein heterodimerization activity|Ral GTPase activator activity			pancreas(1)|skin(1)	2						GTTTCCAATCCTATGTTTGAT	0.443													6	54					0	0	0.001168	0	0
JPH2	57158	broad.mit.edu	37	20	42788275	42788275	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:42788275G>A	uc002xli.1	-	2	2025	c.1152C>T	c.(1150-1152)GCC>GCT	p.A384A		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	384	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CGGCAATCTCGGCCTTCTGGC	0.682													5	23					0	0	0.000602	0	0
TTPAL	79183	broad.mit.edu	37	20	43108650	43108650	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:43108650A>C	uc002xmc.1	+	3	135	c.11A>C	c.(10-12)GAA>GCA	p.E4A	TTPAL_uc002xmd.1_Missense_Mutation_p.E4A|TTPAL_uc010ggr.1_5'UTR	NM_024331	NP_077307	Q9BTX7	TTPAL_HUMAN	tocopherol (alpha) transfer protein-like	4						intracellular	transporter activity			breast(1)	1						ATGTCCGAAGAAAGTGACTCT	0.507													12	61					0	0	0.003163	0	0
C20orf200	253868	broad.mit.edu	37	20	61143604	61143604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:61143604G>A	uc002ycz.1	-	3	735	c.244C>T	c.(244-246)CCC>TCC	p.P82S	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			GGGGCTAAGGGGCCACTTGGG	0.652													11	68					0	0	0.008291	0	0
TCFL5	10732	broad.mit.edu	37	20	61485473	61485473	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr20:61485473G>A	uc002ydp.2	-	5	1368	c.1275C>T	c.(1273-1275)CTC>CTT	p.L425L	TCFL5_uc002ydo.2_Silent_p.L198L|TCFL5_uc002ydq.2_Silent_p.L424L	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	425	Helix-loop-helix motif.				cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					ACGGCACTAAGAGATTCAACT	0.463													6	68					0	0	0.001168	0	0
RCAN1	1827	broad.mit.edu	37	21	35895908	35895908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:35895908G>A	uc002yue.2	-	2	425	c.353C>T	c.(352-354)TCC>TTC	p.S118F	RCAN1_uc002yuc.2_Missense_Mutation_p.S37F|RCAN1_uc002yud.2_5'UTR|RCAN1_uc002yub.2_Missense_Mutation_p.S63F|RCAN1_uc011adx.1_Missense_Mutation_p.S63F	NM_004414	NP_004405	P53805	RCAN1_HUMAN	calcipressin 1 isoform a	118					blood circulation|calcium-mediated signaling|central nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						ATCTGCTGCGGAGAAGGGGTT	0.443													76	664					0	0	0.003610	0	0
PRDM15	63977	broad.mit.edu	37	21	43277340	43277340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:43277340G>A	uc002yzq.1	-	11	1439	c.1328C>T	c.(1327-1329)CCC>CTC	p.P443L	PRDM15_uc002yzo.2_Missense_Mutation_p.P114L|PRDM15_uc002yzp.2_Missense_Mutation_p.P114L|PRDM15_uc002yzr.1_Missense_Mutation_p.P114L	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	443	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGACTCAAAGGGACCGAACTG	0.547													8	149					0	0	0.006214	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43808517	43808517	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:43808517G>A	uc002zbb.2	-	5	642	c.441C>T	c.(439-441)TTC>TTT	p.F147F	TMPRSS3_uc002zaz.2_Silent_p.F20F|TMPRSS3_uc002zba.2_Silent_p.F20F|TMPRSS3_uc002zbc.2_Silent_p.F147F|TMPRSS3_uc002zbd.2_Silent_p.F147F	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	147	SRCR.|Extracellular (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CTTACCTTGGGAAACCCAGTT	0.438													13	81					0	0	0.001855	0	0
CRYAA	1409	broad.mit.edu	37	21	44589331	44589331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:44589331C>T	uc002zdd.1	+	1	191	c.122C>T	c.(121-123)TCG>TTG	p.S41L		NM_000394	NP_000385	P02489	CRYAA_HUMAN	crystallin, alpha A	41					anti-apoptosis|negative regulation of intracellular transport|protein homooligomerization|response to heat|visual perception	cytoplasm|nucleus	structural constituent of eye lens|unfolded protein binding			breast(1)|central_nervous_system(1)	2						CCCTTCCTGTCGTCCACCATC	0.632													25	185					0	0	0.006320	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959992	45959992	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:45959992G>A	uc002zfh.1	-	1	87	c.42C>T	c.(40-42)TCC>TCT	p.S14S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	14						keratin filament				skin(1)	1						GCCAGGAGTCGGAGCAAGCGC	0.612													24	112					0	0	0.005443	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032136	46032136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:46032136C>T	uc002zfo.1	+	1	141	c.119C>T	c.(118-120)TCC>TTC	p.S40F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	40	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						ACTGGCTCCTCCTGGCAGGTG	0.642													15	86					0	0	0.004007	0	0
ADARB1	104	broad.mit.edu	37	21	46595747	46595747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr21:46595747G>A	uc002zgy.2	+	4	566	c.131G>A	c.(130-132)GGG>GAG	p.G44E	ADARB1_uc002zgr.2_Missense_Mutation_p.G44E|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.G44E|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.G44E|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.G93E	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	44					adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		CTCTCCAATGGGGGTGGTGGT	0.622													23	152					0	0	0.002299	0	0
MICAL3	57553	broad.mit.edu	37	22	18347693	18347693	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:18347693G>A	uc002zng.3	-	19	2930	c.2577C>T	c.(2575-2577)GCC>GCT	p.A859A	MICAL3_uc011agl.1_Silent_p.A859A|MICAL3_uc002znh.2_Silent_p.A859A|MICAL3_uc002znj.1_Silent_p.A587A|MICAL3_uc002znk.1_Silent_p.A859A|MICAL3_uc002znl.1_Silent_p.A492A|MICAL3_uc002znm.2_Silent_p.A360A|MICAL3_uc010grf.2_Silent_p.A983A	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	859						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		AGCTGGCCACGGCGTTGGCCC	0.587													15	121					0	0	0.007413	0	0
SLC7A4	6545	broad.mit.edu	37	22	21384498	21384498	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:21384498C>T	uc002zud.2	-	3	1193	c.1125G>A	c.(1123-1125)GGG>GGA	p.G375G	SLC7A4_uc002zue.2_Silent_p.G375G	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	375	Helical; (Potential).				cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	CCGTGAGGAGCCCGAACGCCA	0.632													9	67					0	0	0.004482	0	0
GGTLC2	91227	broad.mit.edu	37	22	22989317	22989317	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:22989317G>A	uc010gtt.2	+	2	304	c.270G>A	c.(268-270)GGG>GGA	p.G90G	LOC96610_uc011aim.1_Intron|POM121L1P_uc011ait.1_5'Flank|GGTLC2_uc010gts.2_Silent_p.G90G	NM_199127	NP_954578	Q14390	GGTL2_HUMAN	gamma-glutamyltransferase-like 4 isoform 1	90					glutathione biosynthetic process		gamma-glutamyltransferase activity			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.3e-31)|Acute lymphoblastic leukemia(6;5.54e-23)		READ - Rectum adenocarcinoma(21;0.145)		ACGAGTTTGGGGTGCCCCCCT	0.612													20	168					0	0	0.003330	0	0
MYO18B	84700	broad.mit.edu	37	22	26164562	26164562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:26164562G>A	uc003abz.1	+	4	929	c.679G>A	c.(679-681)GGA>AGA	p.G227R	MYO18B_uc003aca.1_Missense_Mutation_p.G108R|MYO18B_uc010guy.1_Missense_Mutation_p.G108R|MYO18B_uc010guz.1_Missense_Mutation_p.G108R|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	227						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCAGGCCAAGGAACTGTGGC	0.617													5	20					0	0	0.000602	0	0
ENTHD1	150350	broad.mit.edu	37	22	40231964	40231964	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:40231964C>T	uc003ayg.2	-	4	844	c.593_splice	c.e4-1	p.R198_splice		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1											ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CACACATTTCCTGTCAACAAT	0.348													4	43					0	0	0.000248	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41310302	41310302	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:41310302C>T	uc003azh.2	+	7	1121	c.1029C>T	c.(1027-1029)ATC>ATT	p.I343I	XPNPEP3_uc003azi.2_Silent_p.I264I|XPNPEP3_uc011aoy.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	343					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						TGAGTGACATCACACGTACGT	0.458													8	56					0	0	0.003080	0	0
EP300	2033	broad.mit.edu	37	22	41573197	41573197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr22:41573197C>T	uc003azl.3	+	31	5877	c.5482C>T	c.(5482-5484)CTT>TTT	p.L1828F		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1828					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGCCCAAATGCTTCGCAGGAG	0.612			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				17	51					0	0	0.004990	0	0
SETMAR	6419	broad.mit.edu	37	3	4355406	4355407	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:4355406_4355407CC>TT	uc011asp.1	+	2	1048_1049	c.981_982CC>TT	c.(979-984)GCCCCT>GCTTCT	p.P328S	SUMF1_uc003bps.1_Intron|SETMAR_uc003bpw.3_Missense_Mutation_p.P315S|SETMAR_uc003bpy.3_Missense_Mutation_p.P50S|SETMAR_uc011asq.1_Missense_Mutation_p.P176S|SETMAR_uc011asr.1_Missense_Mutation_p.P72S|SETMAR_uc010hbx.2_Missense_Mutation_p.P123S	NM_006515	NP_006506	Q53H47	SETMR_HUMAN	SET domain and mariner transposase fusion	315	Histone-lysine N-methyltransferase.				DNA integration|DNA repair|transposition, DNA-mediated	chromosome|nucleus	DNA binding|endonuclease activity|histone-lysine N-methyltransferase activity|transposase activity|zinc ion binding			ovary(1)	1		Melanoma(143;0.0657)		Epithelial(13;0.0025)|OV - Ovarian serous cystadenocarcinoma(96;0.011)|all cancers(10;0.0114)		GTGGCTCAGCCCCTTCTGTGTT	0.515								Chromatin_Structure|Direct_reversal_of_damage					3	25					0	0	0.004672	0	0
SRGAP3	9901	broad.mit.edu	37	3	9066956	9066956	+	Missense_Mutation	SNP	G	A	A	rs146672079		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:9066956G>A	uc003brf.1	-	14	2343	c.1667C>T	c.(1666-1668)TCC>TTC	p.S556F	SRGAP3_uc003brg.1_Missense_Mutation_p.S532F|SRGAP3_uc003bri.1_RNA	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	556	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding	p.S556F(1)	SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		TCTCTCAAAGGAATTTTTGAT	0.433			T	RAF1	pilocytic astrocytoma								6	39					0	0	0.001984	0	0
SLC6A11	6538	broad.mit.edu	37	3	10960088	10960088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:10960088G>A	uc003bvz.2	+	8	1104	c.1070G>A	c.(1069-1071)GGT>GAT	p.G357D		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	357					neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TCAGTCCTGGGTTTTATGGCG	0.587													8	43					0	0	0.004482	0	0
EOMES	8320	broad.mit.edu	37	3	27761806	27761806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:27761806G>A	uc003cdx.2	-	2	892	c.892C>T	c.(892-894)CCT>TCT	p.P298S	EOMES_uc003cdy.3_Missense_Mutation_p.P298S|EOMES_uc010hfn.2_Missense_Mutation_p.P298S|EOMES_uc011axc.1_Missense_Mutation_p.P3S	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	298	T-box.				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						CTCAAGAAAGGAAACATGCGC	0.537													17	151					0	0	0.004990	0	0
SLC6A20	54716	broad.mit.edu	37	3	45823681	45823681	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:45823681G>A	uc011bai.1	-	2	280	c.156C>T	c.(154-156)ATC>ATT	p.I52I	SLC6A20_uc011baj.1_Silent_p.I52I	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	52	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TTCCCTCCACGATAAGCATGA	0.592													12	67					0	0	0.002450	0	0
C3orf71	646450	broad.mit.edu	37	3	48956246	48956246	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:48956246G>A	uc010hkk.1	-	1	573	c.337C>T	c.(337-339)CCG>TCG	p.P113S	ARIH2_uc003cvb.2_5'Flank|ARIH2_uc003cvc.2_5'Flank	NM_001123040	NP_001116512	Q8N7S6	CC071_HUMAN	hypothetical protein LOC646450	113						integral to membrane					0						CCCCGATCCGGAAGTGACGCA	0.687													8	38					0	0	0.004482	0	0
UBA7	7318	broad.mit.edu	37	3	49848190	49848190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:49848190G>A	uc003cxr.2	-	11	1477	c.1306C>T	c.(1306-1308)CTC>TTC	p.L436F		NM_003335	NP_003326	P41226	UBA7_HUMAN	ubiquitin-like modifier activating enzyme 7	436	1-2.|2 approximate repeats.				ISG15-protein conjugation|negative regulation of type I interferon production	cytosol	ATP binding|ISG15 activating enzyme activity|ligase activity			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(193;3.58e-06)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00607)		CTCACCAGGAGGTAGTGCTGG	0.612													10	134					0	0	0.008291	0	0
RBM15B	29890	broad.mit.edu	37	3	51430259	51430259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:51430259C>T	uc003dbd.2	+	1	1529	c.1429C>T	c.(1429-1431)CCC>TCC	p.P477S		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	477	RRM 3.				interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GAGGGGTTTTCCCTTGGGTGG	0.562													16	94					0	0	0.004007	0	0
RAD54L2	23132	broad.mit.edu	37	3	51694052	51694053	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:51694052_51694053CC>AT	uc011bdt.1	+	21	3452_3453	c.3327_3328CC>AT	c.(3325-3330)ATCCGT>ATATGT	p.R1110C	RAD54L2_uc003dbh.2_Missense_Mutation_p.R699C|RAD54L2_uc011bdu.1_Missense_Mutation_p.R804C|RAD54L2_uc003dbj.2_Missense_Mutation_p.R436C	NM_015106	NP_055921	Q9Y4B4	ARIP4_HUMAN	RAD54-like 2	1110						nucleus	ATP binding|DNA binding|helicase activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;0.000102)|Kidney(197;0.000758)|KIRC - Kidney renal clear cell carcinoma(197;0.000896)		GGACGTACATCCGTACCAGTGA	0.51													4	23					0	0	0.004672	0	0
IQCF1	132141	broad.mit.edu	37	3	51937102	51937102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:51937102C>T	uc003dbv.2	-	2	105	c.7G>A	c.(7-9)GAG>AAG	p.E3K	IQCF1_uc003dbq.3_RNA	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	3										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GGCTGCTTCTCCTCCTGCAAT	0.527													48	255					0	0	0.003610	0	0
TKT	7086	broad.mit.edu	37	3	53263300	53263300	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:53263300G>A	uc003dgo.2	-	9	1370	c.1260C>T	c.(1258-1260)TCC>TCT	p.S420S	TKT_uc003dgp.2_Silent_p.S52S|TKT_uc011beo.1_Silent_p.S373S|TKT_uc003dgq.2_Silent_p.S420S|TKT_uc011beq.1_Silent_p.S428S|TKT_uc011ber.1_Silent_p.S222S|TKT_uc011bep.1_Silent_p.S337S	NM_001135055	NP_001128527	P29401	TKT_HUMAN	transketolase isoform 1	420					energy reserve metabolic process|xylulose biosynthetic process	cytosol	protein binding|transketolase activity			ovary(2)	2		Prostate(884;0.0959)		BRCA - Breast invasive adenocarcinoma(193;0.000159)|OV - Ovarian serous cystadenocarcinoma(275;0.000314)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)	Thiamine(DB00152)	ACTCACCGATGGAAACGCCGC	0.587													8	37					0	0	0.003080	0	0
LRTM1	57408	broad.mit.edu	37	3	54952852	54952852	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:54952852G>A	uc003dhl.2	-	3	806	c.672C>T	c.(670-672)ATC>ATT	p.I224I	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	224	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GCTCATGAGGGATCCTAAGGA	0.542													6	28					0	0	0.004482	0	0
CADPS	8618	broad.mit.edu	37	3	62385086	62385086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:62385086C>T	uc003dll.2	-	30	4417	c.4057G>A	c.(4057-4059)GAT>AAT	p.D1353N	CADPS_uc003dlj.1_Missense_Mutation_p.D308N|CADPS_uc003dlk.1_Missense_Mutation_p.D801N|CADPS_uc003dlm.2_Missense_Mutation_p.D1314N|CADPS_uc003dln.2_Missense_Mutation_p.D1274N	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1353	Mediates targeting and association with DCVs (By similarity).				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		ATGGTCTAATCGTCTTCTTCG	0.488													5	22					0	0	0.000602	0	0
FAM19A1	407738	broad.mit.edu	37	3	68055810	68055810	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:68055810G>A	uc003dnd.2	+	2	257	c.41G>A	c.(40-42)TGG>TAG	p.W14*	FAM19A1_uc003dne.2_Nonsense_Mutation_p.W14*|FAM19A1_uc003dng.2_Nonsense_Mutation_p.W14*|FAM19A1_uc003dnf.1_RNA	NM_213609	NP_998774	Q7Z5A9	F19A1_HUMAN	family with sequence similarity 19 (chemokine	14						endoplasmic reticulum|extracellular region				ovary(1)	1		Lung NSC(201;0.0117)		BRCA - Breast invasive adenocarcinoma(55;7.7e-05)|Epithelial(33;0.000937)|KIRC - Kidney renal clear cell carcinoma(39;0.0579)|Kidney(39;0.0743)		CTGTATTTGTGGATAAGTGCT	0.522													17	150					0	0	0.006122	0	0
ROBO2	6092	broad.mit.edu	37	3	77684138	77684138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:77684138G>A	uc003dpy.3	+	24	4521	c.3878G>A	c.(3877-3879)GGA>GAA	p.G1293E	ROBO2_uc003dpz.2_Missense_Mutation_p.G1358E|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.G1297E	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1293	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		AAACACAAGGGAGGGCGGATG	0.507													4	39					0	0	0.000248	0	0
GPR128	84873	broad.mit.edu	37	3	100364864	100364864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:100364864C>T	uc003duc.2	+	9	1290	c.1022C>T	c.(1021-1023)TCG>TTG	p.S341L	GPR128_uc011bhc.1_Missense_Mutation_p.S42L	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	341	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						ACAGCTAAATCGGATTTTAGT	0.333													6	23					0	0	0.001168	0	0
CBLB	868	broad.mit.edu	37	3	105412372	105412372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:105412372G>A	uc003dwc.2	-	13	2342	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	CBLB_uc011bhi.1_Missense_Mutation_p.P696S|CBLB_uc003dwd.1_Missense_Mutation_p.P674S|CBLB_uc003dwe.1_Missense_Mutation_p.P674S	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	674	Pro-rich.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						ACTGGAGGAGGAGGAGAAAGC	0.408			Mis S		AML								3	16					0	0	0.000602	0	0
CD200R1L	344807	broad.mit.edu	37	3	112546213	112546213	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:112546213C>T	uc003dzi.1	-	3	656	c.430_splice	c.e3+1	p.V144_splice	CD200R1L_uc011bhw.1_Splice_Site_p.V123_splice|CD200R1L_uc010hqf.1_Splice_Site_p.V123_splice	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2							integral to membrane	receptor activity			ovary(1)	1						ATGCTCCTTACCTAACACTTG	0.428													5	40					0	0	0.000602	0	0
BOC	91653	broad.mit.edu	37	3	112969407	112969407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:112969407G>A	uc003dzx.2	+	4	724	c.103G>A	c.(103-105)GTC>ATC	p.V35I	BOC_uc010hqi.2_Missense_Mutation_p.V35I|BOC_uc003dzy.2_Missense_Mutation_p.V35I|BOC_uc003dzz.2_Missense_Mutation_p.V35I|BOC_uc003dzw.1_Missense_Mutation_p.V35I|BOC_uc003eaa.1_Missense_Mutation_p.V35I	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	35	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			TCCAGACGAGGTCCCTCAGGT	0.552													5	83					0	0	0.000602	0	0
ILDR1	286676	broad.mit.edu	37	3	121712524	121712524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:121712524G>A	uc003ees.2	-	7	1178	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	ILDR1_uc003eeq.2_Missense_Mutation_p.P326S|ILDR1_uc003eer.2_Missense_Mutation_p.P314S|ILDR1_uc010hrg.2_Missense_Mutation_p.P269S	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	358	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GGCCTGGAGGGAATTGGGGTG	0.602													11	56					0	0	0.001368	0	0
CLDN18	51208	broad.mit.edu	37	3	137742645	137742645	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:137742645G>A	uc003ero.1	+	2	419	c.366G>A	c.(364-366)GGG>GGA	p.G122G	CLDN18_uc003erp.1_Silent_p.G122G|CLDN18_uc010hue.1_Missense_Mutation_p.D118N	NM_001002026	NP_001002026	P56856	CLD18_HUMAN	claudin 18 isoform 2	122	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGACCTCCGGGATCATGTTCA	0.493													6	35					0	0	0.006214	0	0
CLSTN2	64084	broad.mit.edu	37	3	140282952	140282952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:140282952G>A	uc003etn.2	+	16	2822	c.2632G>A	c.(2632-2634)GAT>AAT	p.D878N		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	878	Cytoplasmic (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGACTGGGACGATTCTGCGCT	0.582										HNSCC(16;0.037)			5	35					0	0	0.000602	0	0
SPSB4	92369	broad.mit.edu	37	3	140785598	140785598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr3:140785598G>A	uc003ett.2	+	2	906	c.652G>A	c.(652-654)GGC>AGC	p.G218S	SPSB4_uc010hum.2_Missense_Mutation_p.G218S	NM_080862	NP_543138	Q96A44	SPSB4_HUMAN	splA/ryanodine receptor domain and SOCS box	218	B30.2/SPRY.				intracellular signal transduction	cytoplasm	protein binding				0						TGCCGTGTGGGGCCACTGTGA	0.622													5	64					0	0	0.001168	0	0
GAK	2580	broad.mit.edu	37	4	860181	860181	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:860181G>T	uc003gbm.3	-	22	3213	c.3014C>A	c.(3013-3015)CCA>CAA	p.P1005Q	GAK_uc003gbn.3_Missense_Mutation_p.P926Q|GAK_uc010ibi.2_Missense_Mutation_p.P186Q|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.P858Q	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	1005					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GCTGCAGGATGGGGGCGGAGC	0.632													10	103					1.08611e-07	1.51092e-07	0.000978	1	0
SH3BP2	6452	broad.mit.edu	37	4	2833690	2833690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:2833690C>T	uc003gfi.3	+	10	1511	c.1391C>T	c.(1390-1392)TCC>TTC	p.S464F	SH3BP2_uc011bvp.1_Missense_Mutation_p.S492F|SH3BP2_uc003gfj.3_Missense_Mutation_p.S521F|SH3BP2_uc003gfk.3_Missense_Mutation_p.S464F|SH3BP2_uc003gfl.3_Missense_Mutation_p.S397F|SH3BP2_uc003gfm.3_Missense_Mutation_p.S439F	NM_001122681	NP_001116153	P78314	3BP2_HUMAN	SH3-domain binding protein 2 isoform a	464	SH2.				signal transduction		SH3 domain binding|SH3/SH2 adaptor activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.164)		ACCACGGAGTCCTGCGAAGTG	0.612									Cherubism				13	51					0	0	0.004007	0	0
RGS12	6002	broad.mit.edu	37	4	3417784	3417785	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:3417784_3417785CC>TT	uc003ggw.2	+	7	3267_3268	c.2363_2364CC>TT	c.(2362-2364)GCC>GTT	p.A788V	RGS12_uc003ggu.2_Missense_Mutation_p.A788V|RGS12_uc010ics.1_5'UTR|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Missense_Mutation_p.A788V|RGS12_uc003ggy.1_Missense_Mutation_p.A186V|RGS12_uc010ict.1_Missense_Mutation_p.A140V|RGS12_uc003ggz.2_Missense_Mutation_p.A140V|RGS12_uc010icu.1_5'UTR|RGS12_uc011bvs.1_Missense_Mutation_p.A130V|RGS12_uc003gha.2_Missense_Mutation_p.A130V|RGS12_uc010icv.2_5'UTR|RGS12_uc003ghb.2_5'UTR	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	788	RGS.					condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GACAGCCAGGCCCAGCTAGCAG	0.599													7	56					0	0	0.004672	0	0
SH3TC1	54436	broad.mit.edu	37	4	8218683	8218683	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:8218683G>A	uc003gkv.3	+	7	730	c.629_splice	c.e7-1	p.G210_splice	SH3TC1_uc003gkw.3_Splice_Site_p.G134_splice|SH3TC1_uc003gkx.3_Intron	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1								binding			large_intestine(2)|pancreas(1)	3						TCCTTTTGAAGGGCCCTTCTT	0.652													17	78					0	0	0.008871	0	0
DRD5	1816	broad.mit.edu	37	4	9784016	9784016	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:9784016C>T	uc003gmb.3	+	1	759	c.363C>T	c.(361-363)ATC>ATT	p.I121I		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	121	Helical; Name=3; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CCTTCGACATCATGTGCTCCA	0.617													8	65					0	0	0.003080	0	0
ARAP2	116984	broad.mit.edu	37	4	36069761	36069761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:36069761C>T	uc003gsq.1	-	33	5221	c.4883G>A	c.(4882-4884)CGA>CAA	p.R1628Q	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1628					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCGATGTTTTCGGGGTCGATT	0.507													4	17					0	0	0.000248	0	0
APBB2	323	broad.mit.edu	37	4	40832536	40832536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:40832536G>A	uc003gvl.2	-	13	2215	c.1585C>T	c.(1585-1587)CGA>TGA	p.R529*	APBB2_uc010ifu.2_Nonsense_Mutation_p.R101*|APBB2_uc003gvm.2_Nonsense_Mutation_p.R508*|APBB2_uc003gvn.2_Nonsense_Mutation_p.R530*|APBB2_uc003gvk.2_5'UTR	NM_173075	NP_775098	Q92870	APBB2_HUMAN	amyloid beta A4 precursor protein-binding,	529	PID 1.				cell cycle arrest|intracellular signal transduction|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|regulation of transcription, DNA-dependent	growth cone|lamellipodium|membrane|nucleus|synapse	beta-amyloid binding|transcription factor binding			ovary(2)|large_intestine(1)	3						GTGTCACATCGAAATACATGA	0.433													5	42					0	0	0.000602	0	0
PDGFRA	5156	broad.mit.edu	37	4	55131161	55131161	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:55131161G>C	uc003han.3	+	5	1035	c.704G>C	c.(703-705)TGT>TCT	p.C235S	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_3'UTR|PDGFRA_uc010igq.1_Missense_Mutation_p.C129S|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	235	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.C235Y(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTGGTCACCTGTGCTGTTTTT	0.378			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			7	42					0	0	0.001984	0	0
REST	5978	broad.mit.edu	37	4	57797292	57797293	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:57797292_57797293CC>TT	uc003hch.2	+	4	2615_2616	c.2268_2269CC>TT	c.(2266-2271)GTCCAG>GTTTAG	p.Q757*	REST_uc003hci.2_Nonsense_Mutation_p.Q757*|REST_uc010ihf.2_Nonsense_Mutation_p.Q431*	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	757	Pro-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding	p.M753_P768delMEVVQKEPVKIELSPP(1)		skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					TGGAGGTGGTCCAGAAGGAACC	0.55													37	247					0	0	0.004672	0	0
FRAS1	80144	broad.mit.edu	37	4	79301095	79301095	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:79301095T>G	uc003hlb.2	+	27	3948	c.3508T>G	c.(3508-3510)TGG>GGG	p.W1170G	FRAS1_uc003hkw.2_Missense_Mutation_p.W1170G	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1169	CSPG 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCGTTTTAGCTGGAAAGATGT	0.453													7	39					0	0	0.003080	0	0
HPSE	10855	broad.mit.edu	37	4	84232034	84232034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:84232034C>T	uc003hoj.3	-	5	782	c.683G>A	c.(682-684)AGT>AAT	p.S228N	HPSE_uc010ika.2_Missense_Mutation_p.S170N|HPSE_uc011ccq.1_Intron|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Intron|HPSE_uc011cct.1_Missense_Mutation_p.S228N|HPSE_uc003hok.3_Missense_Mutation_p.S228N	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	228					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	CTTAAGGAAACTGTTAGGTTC	0.308													6	46					0	0	0.001168	0	0
ADH1B	125	broad.mit.edu	37	4	100235078	100235078	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:100235078T>C	uc003hus.3	-	6	812	c.728A>G	c.(727-729)AAC>AGC	p.N243S	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.N203S|ADH1B_uc011ceh.1_Missense_Mutation_p.N88S|ADH1B_uc011cei.1_Missense_Mutation_p.N203S	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	243					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GTCTTGAGGGTTGATGCATTC	0.473													18	155					0	0	0.003330	0	0
ADH1C	126	broad.mit.edu	37	4	100261809	100261809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:100261809G>A	uc003huu.2	-	9	972	c.887C>T	c.(886-888)CCT>CTT	p.P296L		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	296					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	GGAATCAGGAGGTACCCCTAC	0.468									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				9	70					0	0	0.008291	0	0
ELOVL6	79071	broad.mit.edu	37	4	110972501	110972501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:110972501G>A	uc003hzz.2	-	5	917	c.791C>T	c.(790-792)GCT>GTT	p.A264V	ELOVL6_uc003iaa.2_Missense_Mutation_p.A264V	NM_001130721	NP_001124193	Q9H5J4	ELOV6_HUMAN	elongation of very long chain fatty acids-like	264					fatty acid elongation, saturated fatty acid|long-chain fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process		fatty acid elongase activity|protein binding			haematopoietic_and_lymphoid_tissue(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00462)		ACACTATTCAGCTTTCGTTGT	0.438													3	25					0	0	0.004672	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952318	119952318	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:119952318C>T	uc003icm.3	+	4	2584	c.2388C>T	c.(2386-2388)AAC>AAT	p.N796N	SYNPO2_uc010ina.2_Silent_p.N796N|SYNPO2_uc010inb.2_Silent_p.N796N|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Silent_p.N724N	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	796	Pro-rich.					nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CCACATCCAACCCATCAAAGG	0.567													7	52					0	0	0.001984	0	0
TRPC3	7222	broad.mit.edu	37	4	122831397	122831397	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:122831397C>T	uc003ieg.2	-	6	1778	c.1704G>A	c.(1702-1704)ACG>ACA	p.T568T	TRPC3_uc010inr.2_Silent_p.T440T|TRPC3_uc003ief.2_Silent_p.T495T|TRPC3_uc011cgl.1_Silent_p.T232T	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	483	Cytoplasmic (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GTTGTGCCTTCGTTGCCTGAA	0.453													4	25					0	0	0.000602	0	0
TKTL2	84076	broad.mit.edu	37	4	164393616	164393616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:164393616G>A	uc003iqp.3	-	1	1432	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	424						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TTCTCCAGTGGATACCCCACA	0.483													9	66					0	0	0.004482	0	0
FAM92A3	403315	broad.mit.edu	37	4	183960159	183960159	+	RNA	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:183960159C>T	uc003ivi.3	+	1		c.1342C>T				NR_003612				Homo sapiens family with sequence similarity 92, member A3, mRNA (cDNA clone IMAGE:4822144).												0						GTCACCTCACCAGAGATCATG	0.393													4	45					0	0	0.001168	0	0
CCDC110	256309	broad.mit.edu	37	4	186380140	186380140	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:186380140A>G	uc003ixu.3	-	6	1677	c.1601T>C	c.(1600-1602)TTA>TCA	p.L534S	CCDC110_uc003ixv.3_Missense_Mutation_p.L497S|CCDC110_uc011ckt.1_Missense_Mutation_p.L534S	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	534	Potential.					nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TTGCTTCTCTAAAGAAAGTTG	0.269													6	23					0	0	0.001984	0	0
F11	2160	broad.mit.edu	37	4	187192920	187192920	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:187192920C>T	uc003iza.1	+	3	546	c.213C>T	c.(211-213)ACC>ACT	p.T71T	F11_uc003iyz.2_Silent_p.T71T	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	71	Apple 1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	AGGATCCCACCCGATGGTAAA	0.408													5	57					0	0	0.000602	0	0
ZFP42	132625	broad.mit.edu	37	4	188924669	188924669	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr4:188924669C>T	uc003izg.1	+	3	953	c.708C>T	c.(706-708)TTC>TTT	p.F236F	ZFP42_uc003izh.1_Silent_p.F236F|ZFP42_uc003izi.1_Silent_p.F236F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	236	C2H2-type 2.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		AGAGACATTTCCTGGTTCATA	0.512													10	59					0	0	0.006214	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	163322	163322	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:163322G>A	uc003jak.2	+	11	2117	c.2067G>A	c.(2065-2067)GGG>GGA	p.G689G		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	689					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GCCTTCCAGGGGCAGGGGCCA	0.672													6	30					0	0	0.001168	0	0
LPCAT1	79888	broad.mit.edu	37	5	1474742	1474743	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:1474742_1474743CC>TT	uc003jcm.2	-	10	1074_1075	c.957_958GG>AA	c.(955-960)GCGGAA>GCAAAA	p.E320K		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	320	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		AGCTGTCCTTCCGCCAGGGCCA	0.619													6	35					0	0	0.004672	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461342	5461342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:5461342C>T	uc003jdm.3	+	13	2117	c.1895C>T	c.(1894-1896)TCC>TTC	p.S632F		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	632										ovary(1)|central_nervous_system(1)	2						AGTTTTTCTTCCTCTTCTACC	0.413													13	70					0	0	0.001855	0	0
CDH18	1016	broad.mit.edu	37	5	19747249	19747249	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:19747249C>T	uc003jgc.2	-	3	702	c.325G>A	c.(325-327)GAT>AAT	p.D109N	CDH18_uc003jgd.2_Missense_Mutation_p.D109N|CDH18_uc011cnm.1_Missense_Mutation_p.D109N	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	109	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GAGTGGATATCACCCGTGGTA	0.448													12	81					0	0	0.001368	0	0
CDH9	1007	broad.mit.edu	37	5	26881634	26881634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:26881634C>T	uc003jgs.1	-	12	2150	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	CDH9_uc011cnv.1_Missense_Mutation_p.D254N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	661	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCGCCTTCATCGTTGTAGGTC	0.438													7	45					0	0	0.001984	0	0
PDZD2	23037	broad.mit.edu	37	5	32074434	32074434	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:32074434G>A	uc003jhl.2	+	18	3610	c.3222G>A	c.(3220-3222)TGG>TGA	p.W1074*	PDZD2_uc003jhm.2_Nonsense_Mutation_p.W1074*|PDZD2_uc011cnx.1_Nonsense_Mutation_p.W900*	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1074					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GAAGCTGGTGGAAGAAGGAAC	0.587													21	124					0	0	0.003330	0	0
RAD1	5810	broad.mit.edu	37	5	34911702	34911702	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:34911702C>G	uc003jix.2	-	4	852	c.523G>C	c.(523-525)GAA>CAA	p.E175Q	RAD1_uc003jiw.2_Missense_Mutation_p.E66Q|RAD1_uc003jiy.2_Missense_Mutation_p.E175Q	NM_002853	NP_002844	O60671	RAD1_HUMAN	RAD1 homolog	175					DNA damage checkpoint|DNA repair|DNA replication|meiotic prophase I	nucleoplasm	3'-5' exonuclease activity|damaged DNA binding|exodeoxyribonuclease III activity|protein binding				0	all_lung(31;0.000107)	Lung NSC(810;5.19e-05)|Ovarian(839;0.0448)|Breast(839;0.198)	COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			TGTAGGACTTCACTCGTCATA	0.413								Other_conserved_DNA_damage_response_genes					11	75					0	0	0.008291	0	0
RAD1	5810	broad.mit.edu	37	5	34911751	34911751	+	Silent	SNP	C	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:34911751C>A	uc003jix.2	-	4	803	c.474G>T	c.(472-474)CTG>CTT	p.L158L	RAD1_uc003jiw.2_Silent_p.L49L|RAD1_uc003jiy.2_Silent_p.L158L	NM_002853	NP_002844	O60671	RAD1_HUMAN	RAD1 homolog	158					DNA damage checkpoint|DNA repair|DNA replication|meiotic prophase I	nucleoplasm	3'-5' exonuclease activity|damaged DNA binding|exodeoxyribonuclease III activity|protein binding				0	all_lung(31;0.000107)	Lung NSC(810;5.19e-05)|Ovarian(839;0.0448)|Breast(839;0.198)	COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)			CCTCTGACTGCAGAATAATTT	0.423								Other_conserved_DNA_damage_response_genes					11	81					2.27111e-07	3.15305e-07	0.001368	1	0
UGT3A1	133688	broad.mit.edu	37	5	35955811	35955811	+	Missense_Mutation	SNP	G	A	A	rs141143848	byFrequency	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:35955811G>A	uc003jjv.1	-	6	1388	c.1231C>T	c.(1231-1233)CGG>TGG	p.R411W	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.R411W|UGT3A1_uc011cor.1_Missense_Mutation_p.R377W	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	411	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGATTCAACCGGATAGAGACA	0.483													11	93					0	0	0.000978	0	0
UGT3A2	167127	broad.mit.edu	37	5	36035968	36035968	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:36035968C>T	uc003jjz.1	-	7	1497	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A	UGT3A2_uc011cos.1_Silent_p.A434A|UGT3A2_uc011cot.1_Silent_p.A166A	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	468	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity	p.A468T(1)		ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGAGGTGCGTCGCGCCCCCTG	0.637													6	44					0	0	0.001168	0	0
OSMR	9180	broad.mit.edu	37	5	38933161	38933161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:38933161C>T	uc003jln.1	+	18	2922	c.2555C>T	c.(2554-2556)CCC>CTC	p.P852L	OSMR_uc011cpj.1_Missense_Mutation_p.P56L	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	852	Cytoplasmic (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GGCCCTGGCCCCTGCATCTGT	0.493													25	102					0	0	0.004656	0	0
HTR1A	3350	broad.mit.edu	37	5	63257242	63257242	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:63257242C>T	uc011cqt.1	-	1	305	c.305G>A	c.(304-306)TGG>TAG	p.W102*		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	102	Extracellular (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GCCCAGTGTCCACTTGTTGAG	0.587													6	29					0	0	0.001168	0	0
ANKRA2	57763	broad.mit.edu	37	5	72858543	72858543	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:72858543A>C	uc003kcu.1	-	2	810	c.164T>G	c.(163-165)ATA>AGA	p.I55R	ANKRA2_uc003kcv.2_Missense_Mutation_p.I55R	NM_023039	NP_075526	Q9H9E1	ANRA2_HUMAN	ankyrin repeat, family A (RFXANK-like), 2	55						cytoskeleton|cytosol|membrane	low-density lipoprotein particle binding				0		Lung NSC(167;0.0378)|Ovarian(174;0.0908)		OV - Ovarian serous cystadenocarcinoma(47;3.71e-54)		GTTAGGCAATATGAATTTCAT	0.388													15	133					0	0	0.008871	0	0
ENC1	8507	broad.mit.edu	37	5	73931417	73931417	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:73931417G>A	uc003kdc.3	-	2	2025	c.894C>T	c.(892-894)TTC>TTT	p.F298F	ENC1_uc011css.1_Silent_p.F225F	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	298	Kelch 1.				nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		CTCCCAGAAGGAAGAGGGCAT	0.507													12	80					0	0	0.000978	0	0
F2RL2	2151	broad.mit.edu	37	5	75914172	75914172	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:75914172G>A	uc003kem.2	-	2	545	c.360C>T	c.(358-360)TTC>TTT	p.F120F	IQGAP2_uc003kek.2_Intron|IQGAP2_uc010izv.2_Intron|IQGAP2_uc011csv.1_Intron|IQGAP2_uc003kel.2_Intron|F2RL2_uc011csw.1_Silent_p.F98F	NM_004101	NP_004092	O00254	PAR3_HUMAN	coagulation factor II (thrombin) receptor-like 2	120	Helical; Name=1; (Potential).				platelet activation	extracellular region|integral to plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|thrombin receptor activity			skin(2)|ovary(1)	3		all_lung(232;0.000462)|Lung NSC(167;0.00124)|Prostate(461;0.00955)|Ovarian(174;0.0129)		all cancers(79;4.43e-43)		TGGTCCTGAAGAAAAGCATCC	0.453													6	40					0	0	0.001168	0	0
PDE8B	8622	broad.mit.edu	37	5	76627230	76627230	+	Silent	SNP	G	A	A	rs150153853		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:76627230G>A	uc003kfa.2	+	5	699	c.654G>A	c.(652-654)TCG>TCA	p.S218S	PDE8B_uc003kfb.2_Silent_p.S198S|PDE8B_uc003kfc.2_Silent_p.S218S|PDE8B_uc003kfd.2_Silent_p.S218S|PDE8B_uc003kfe.2_Silent_p.S218S	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	218					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		GCTGCAGATCGGATGACCATG	0.498													24	116					0	0	0.007291	0	0
ANKRD32	84250	broad.mit.edu	37	5	94022323	94022323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:94022323C>T	uc003kkr.3	+	16	2101	c.2021C>T	c.(2020-2022)TCC>TTC	p.S674F	ANKRD32_uc003kks.2_Missense_Mutation_p.S38F	NM_032290	NP_115666	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	674										ovary(2)	2		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		TCCTTTTCCTCCTCCTGGCTT	0.373													9	141					0	0	0.008291	0	0
CAST	831	broad.mit.edu	37	5	96065389	96065389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:96065389C>T	uc003klz.1	+	6	422	c.260C>T	c.(259-261)TCA>TTA	p.S87L	CAST_uc003klt.2_Missense_Mutation_p.S87L|CAST_uc003klu.2_Missense_Mutation_p.S170L|CAST_uc003klv.2_Missense_Mutation_p.S148L|CAST_uc003klw.2_Missense_Mutation_p.S151L|CAST_uc003klx.2_Missense_Mutation_p.S129L|CAST_uc003kly.2_Missense_Mutation_p.S148L|CAST_uc011cuo.1_Missense_Mutation_p.S133L|CAST_uc011cup.1_Missense_Mutation_p.S65L|CAST_uc011cuq.1_Intron|CAST_uc011cur.1_Missense_Mutation_p.S73L|CAST_uc011cus.1_Missense_Mutation_p.S87L|CAST_uc003kma.1_Missense_Mutation_p.S46L|CAST_uc011cut.1_Missense_Mutation_p.S65L|CAST_uc003kmb.2_Missense_Mutation_p.S46L|CAST_uc003kmc.2_Missense_Mutation_p.S87L|CAST_uc003kmd.2_Missense_Mutation_p.S65L|CAST_uc003kme.2_Missense_Mutation_p.S46L|CAST_uc003kmf.2_Missense_Mutation_p.S65L	NM_001042443	NP_001035908	P20810	ICAL_HUMAN	calpastatin isoform i	87							calcium-dependent cysteine-type endopeptidase inhibitor activity|protein binding			central_nervous_system(3)|ovary(1)|kidney(1)	5		all_cancers(142;5.27e-07)|all_epithelial(76;8.21e-10)|all_lung(232;0.000396)|Lung NSC(167;0.000539)|Ovarian(225;0.024)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;6.85e-15)		GTTTCCAGATCAGCTGAACAG	0.423													5	32					0	0	0.000602	0	0
AFF4	27125	broad.mit.edu	37	5	132232412	132232412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:132232412G>A	uc003kyd.2	-	11	2318	c.1910C>T	c.(1909-1911)TCC>TTC	p.S637F	AFF4_uc011cxk.1_Missense_Mutation_p.S315F|AFF4_uc003kye.1_Missense_Mutation_p.S637F	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	637					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGATTTCTGGGAAGATTTACT	0.428													6	23					0	0	0.001984	0	0
CXXC5	51523	broad.mit.edu	37	5	139060751	139060751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:139060751C>T	uc010jfg.1	+	2	933	c.643C>T	c.(643-645)CCC>TCC	p.P215S	CXXC5_uc003let.2_Missense_Mutation_p.P215S	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	215					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCGCTTTCCCCATCAACCC	0.652													6	56					0	0	0.001168	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480581	140480581	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:140480581C>T	uc003lio.2	+	1	348	c.348C>T	c.(346-348)TTC>TTT	p.F116F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	116	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTTGCAATTCGTTACAAACG	0.418													15	114					0	0	0.003163	0	0
PCDHB14	56122	broad.mit.edu	37	5	140605331	140605331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:140605331G>A	uc003ljb.2	+	1	2254	c.2254G>A	c.(2254-2256)GAG>AAG	p.E752K	PCDHB14_uc011dal.1_Missense_Mutation_p.E599K	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	752	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTACCAATACGAGGTGTGTCT	0.572													22	201					0	0	0.002299	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725727	140725727	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:140725727C>T	uc003ljm.1	+	1	2127	c.2127C>T	c.(2125-2127)ATC>ATT	p.I709I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.I469I|PCDHGA3_uc011dap.1_Silent_p.I709I	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	709	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTTCGTCATCGTGCTGCTGG	0.682													33	146					0	0	0.005524	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140756033	140756033	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:140756033C>T	uc003ljy.1	+	1	2383	c.2383C>T	c.(2383-2385)CAG>TAG	p.Q795*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Nonsense_Mutation_p.Q795*	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	795	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGATAACTCAGGATTTACT	0.478													7	66					0	0	0.004482	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040888	147040888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:147040888C>T	uc003loq.1	-	3	632	c.250G>A	c.(250-252)GAG>AAG	p.E84K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E42K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E84K|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E84K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	84	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGCAGCTCCTTCATCTTC	0.537													24	118					0	0	0.002780	0	0
FAT2	2196	broad.mit.edu	37	5	150947448	150947448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:150947448C>T	uc003lue.3	-	1	1058	c.1045G>A	c.(1045-1047)GGC>AGC	p.G349S	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.G349S	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	349	Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTGAAAGCCCCTGATCTGG	0.522													16	99					0	0	0.004007	0	0
RGS14	10636	broad.mit.edu	37	5	176794828	176794828	+	Splice_Site	SNP	T	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:176794828T>G	uc003mgf.2	+	7	921	c.739_splice	c.e7+2	p.E247_splice	RGS14_uc003mgg.1_Splice_Site_p.E94_splice|RGS14_uc003mgh.2_Splice_Site_p.E94_splice|RGS14_uc003mgi.2_5'UTR	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14						chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCGCCGGGGTGAGGGCAGGA	0.652													9	40					0	0	0.004482	0	0
FAM193B	54540	broad.mit.edu	37	5	176958471	176958472	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:176958471_176958472GG>AT	uc003mhs.3	-	7	2576_2577	c.987_988CC>AT	c.(985-990)CTCCGC>CTATGC	p.R330C	FAM193B_uc003mht.2_Translation_Start_Site|FAM193B_uc003mhu.2_Intron|FAM193B_uc003mhv.2_Translation_Start_Site|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0						AGCCTCGAGCGGAGCTTCTCCC	0.693													5	26					0	0	0.004672	0	0
DSP	1832	broad.mit.edu	37	6	7568053	7568053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:7568053G>A	uc003mxp.1	+	10	1459	c.1180G>A	c.(1180-1182)GGG>AGG	p.G394R	DSP_uc003mxq.1_Missense_Mutation_p.G394R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	394	Globular 1.|Spectrin 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ATACCTGAAGGGGCTCCAGGA	0.493													10	21					0	0	0.006214	0	0
CAP2	10486	broad.mit.edu	37	6	17539604	17539604	+	Silent	SNP	C	T	T	rs150167032		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:17539604C>T	uc003ncb.2	+	8	984	c.741C>T	c.(739-741)TTC>TTT	p.F247F	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.F221F|CAP2_uc011djb.1_Silent_p.F183F|CAP2_uc011djc.1_Silent_p.F135F|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	247					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			CTCCACTTTTCGAGAATGAAG	0.507													15	61					0	0	0.004007	0	0
SLC17A1	6568	broad.mit.edu	37	6	25799037	25799037	+	Silent	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:25799037T>C	uc003nfh.3	-	12	1496	c.1380A>G	c.(1378-1380)AAA>AAG	p.K460K	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.K458K|SLC17A1_uc010jqc.1_Silent_p.K404K	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	460					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						GTTGTTTTTCTTTAGCCCAGT	0.423													9	44					0	0	0.008291	0	0
MDC1	9656	broad.mit.edu	37	6	30672858	30672858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:30672858G>A	uc003nrg.3	-	10	4542	c.4102C>T	c.(4102-4104)CCT>TCT	p.P1368S	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Missense_Mutation_p.P975S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1368	Pro-rich.|Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GGGGCTATAGGGACAGTTGAT	0.547								Other_conserved_DNA_damage_response_genes					23	271					0	0	0.002299	0	0
CFB	629	broad.mit.edu	37	6	31918995	31918995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:31918995G>A	uc003nyj.3	+	15	2208	c.1930G>A	c.(1930-1932)GAG>AAG	p.E644K	CFB_uc011dor.1_Missense_Mutation_p.E1146K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	644	Peptidase S1.				complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GACTCGGAAGGAGGTCTACAT	0.498													34	338					0	0	0.003271	0	0
NOTCH4	4855	broad.mit.edu	37	6	32190333	32190334	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:32190333_32190334GG>AA	uc003obb.2	-	3	544_545	c.405_406CC>TT	c.(403-408)ATCCAG>ATTTAG	p.Q136*	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Nonsense_Mutation_p.Q136*	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	136	EGF-like 3.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CCCGAGGCCTGGATGTGGCAGC	0.634													63	475					0	0	0.004672	0	0
COL11A2	1302	broad.mit.edu	37	6	33139255	33139255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:33139255C>T	uc003ocx.1	-	43	3475	c.3247G>A	c.(3247-3249)GAT>AAT	p.D1083N	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.D997N|COL11A2_uc003ocz.1_Missense_Mutation_p.D976N	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1083	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						TTGTCTCCATCCTCTCCAGCC	0.627													9	52					0	0	0.006214	0	0
PHF1	5252	broad.mit.edu	37	6	33381191	33381191	+	Silent	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:33381191A>G	uc003oeh.2	+	6	680	c.444A>G	c.(442-444)GGA>GGG	p.G148G	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Silent_p.G148G|PHF1_uc010jux.2_5'UTR	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	148					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				TGCAGAGGGGAGGTGCCCTGA	0.602													3	85					0	0	0.000248	0	0
ZBTB9	221504	broad.mit.edu	37	6	33423956	33423956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:33423956C>T	uc003oeq.2	+	2	1347	c.1079C>T	c.(1078-1080)CCT>CTT	p.P360L		NM_152735	NP_689948	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	360	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGTGGAGGACCTGGGGGAGCA	0.607													6	40					0	0	0.001168	0	0
PIM1	5292	broad.mit.edu	37	6	37138792	37138792	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:37138792C>T	uc003onk.2	+	3	655	c.225C>T	c.(223-225)TCC>TCT	p.S75S	PIM1_uc011dtw.1_5'Flank	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	166	Protein kinase.				cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	ACCGGATTTCCGACTGGGGAG	0.647			T	BCL6	NHL								24	141					0	0	0.004656	0	0
TREML2P1	221438	broad.mit.edu	37	6	41217317	41217317	+	RNA	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:41217317G>A	uc003oqe.1	+	1		c.203G>A				NR_002794				Homo sapiens TREM-like transcript 5 (TLT5) pseudogene mRNA, partial sequence.												0						GACTCAGGCCGATACTGGTGC	0.627													5	38					0	0	0.001984	0	0
ABCC10	89845	broad.mit.edu	37	6	43402442	43402442	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:43402442C>T	uc003ouy.1	+	4	1679	c.1464C>T	c.(1462-1464)TGC>TGT	p.C488C	ABCC10_uc003ouz.1_Silent_p.C445C|ABCC10_uc010jyo.1_5'Flank	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	488	ABC transmembrane type-1 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			TAGAGGCCTGCCGGGCTCGAG	0.592													56	155					0	0	0.003610	0	0
YIPF3	25844	broad.mit.edu	37	6	43483726	43483726	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:43483726G>T	uc003ovl.1	-	2	346	c.189C>A	c.(187-189)GAC>GAA	p.D63E	YIPF3_uc011dvk.1_Missense_Mutation_p.D28E|YIPF3_uc010jyr.1_Missense_Mutation_p.D69E|YIPF3_uc010jys.1_5'UTR|YIPF3_uc003ovm.1_5'UTR|YIPF3_uc010jyt.1_Missense_Mutation_p.D63E|POLR1C_uc003ovn.2_5'Flank|POLR1C_uc003ovo.1_5'Flank	NM_015388	NP_056203	Q9GZM5	YIPF3_HUMAN	natural killer cell-specific antigen KLIP1	63					cell differentiation	integral to membrane|plasma membrane|transport vesicle					0	all_cancers(18;3.79e-05)|Lung NSC(15;0.00217)|all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00736)|OV - Ovarian serous cystadenocarcinoma(102;0.0711)			CTGCATCAGCGTCTACTTCTT	0.562													14	114					3.35478e-16	4.68582e-16	0.003163	1	0
KCNQ5	56479	broad.mit.edu	37	6	73904456	73904456	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:73904456C>T	uc003pgk.2	+	14	2465	c.2118C>T	c.(2116-2118)AGC>AGT	p.S706S	KCNQ5_uc011dyh.1_Silent_p.S725S|KCNQ5_uc011dyi.1_Silent_p.S716S|KCNQ5_uc010kat.2_Silent_p.S697S|KCNQ5_uc011dyj.1_Silent_p.S596S|KCNQ5_uc011dyk.1_Silent_p.S456S	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	706					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		ACGCGCTTAGCCCTACTATGC	0.502													9	68					0	0	0.006214	0	0
COL12A1	1303	broad.mit.edu	37	6	75797361	75797361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:75797361G>A	uc003phs.2	-	65	9279	c.9113C>T	c.(9112-9114)CCA>CTA	p.P3038L	COL12A1_uc003pht.2_Missense_Mutation_p.P1874L	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	3038	Triple-helical region (COL1) with 2 imperfections.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGGAGGACCTGGGGGTCCTCG	0.577													19	153					0	0	0.001523	0	0
MDN1	23195	broad.mit.edu	37	6	90402272	90402272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:90402272G>A	uc003pnn.1	-	63	10593	c.10477C>T	c.(10477-10479)CCC>TCC	p.P3493S		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3493					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCCCGAGTGGGACAGGCTTTC	0.577													6	39					0	0	0.001168	0	0
GPR63	81491	broad.mit.edu	37	6	97246999	97246999	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:97246999C>T	uc010kcl.2	-	3	1087	c.609G>A	c.(607-609)TGG>TGA	p.W203*	GPR63_uc003pou.2_Nonsense_Mutation_p.W203*	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	203	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		AGGAAGTTGCCCAAGAAACTG	0.463													7	36					0	0	0.001984	0	0
SNX9	51429	broad.mit.edu	37	6	158349733	158349733	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:158349733C>T	uc003qqv.1	+	12	1460	c.1287C>T	c.(1285-1287)GGC>GGT	p.G429G		NM_016224	NP_057308	Q9Y5X1	SNX9_HUMAN	sorting nexin 9	429	BAR.				cell communication|intracellular protein transport|lipid tube assembly|positive regulation of GTPase activity|positive regulation of protein oligomerization|receptor-mediated endocytosis	clathrin-coated vesicle|cytoplasmic vesicle membrane|extrinsic to internal side of plasma membrane|ruffle|trans-Golgi network	1-phosphatidylinositol binding|protein homodimerization activity|ubiquitin protein ligase binding				0		Breast(66;0.000776)|Ovarian(120;0.0303)|Prostate(117;0.167)		OV - Ovarian serous cystadenocarcinoma(65;8.06e-18)|BRCA - Breast invasive adenocarcinoma(81;4.48e-05)		GCTGCACGGGCCGTAAGTCCA	0.592													3	7					0	0	0.004672	0	0
IGF2R	3482	broad.mit.edu	37	6	160517543	160517543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:160517543C>T	uc003qta.2	+	45	6876	c.6728C>T	c.(6727-6729)ACC>ATC	p.T2243I		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	2243	15.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GTTTCTTCCACCATCTTCTTC	0.547													18	139					0	0	0.007413	0	0
FGFR1OP	11116	broad.mit.edu	37	6	167438348	167438348	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr6:167438348C>T	uc003qvj.2	+	9	970	c.885C>T	c.(883-885)TCC>TCT	p.S295S	CCR6_uc003qvl.2_5'UTR|FGFR1OP_uc011egp.1_Silent_p.S248S|FGFR1OP_uc003qvk.2_Silent_p.S275S	NM_007045	NP_008976	O95684	FR1OP_HUMAN	FGFR1 oncogene partner isoform a	295					G2/M transition of mitotic cell cycle|microtubule anchoring|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell proliferation	centrosome|cytosol|nucleus|perinuclear region of cytoplasm	protein homodimerization activity|protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(1)	1		Breast(66;1.48e-05)|Ovarian(120;0.0607)		OV - Ovarian serous cystadenocarcinoma(33;1.73e-19)|BRCA - Breast invasive adenocarcinoma(81;5.1e-06)|GBM - Glioblastoma multiforme(31;0.00231)		GACTCAGCTCCCTGGCGGGAG	0.463			T	FGFR1	MPD|NHL								8	67					0	0	0.004482	0	0
ABCB5	340273	broad.mit.edu	37	7	20721180	20721180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:20721180G>A	uc003suw.3	+	6	971	c.425G>A	c.(424-426)CGA>CAA	p.R142Q	ABCB5_uc010kuh.2_Missense_Mutation_p.R587Q	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	142	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TCTACTATTCGAAGTGCAGAT	0.403													9	46					0	0	0.004482	0	0
DNAH11	8701	broad.mit.edu	37	7	21934593	21934593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:21934593C>T	uc003svc.2	+	80	13077	c.13046C>T	c.(13045-13047)CCT>CTT	p.P4349L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4349					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTGGCTTATCCTTCTACTTAT	0.522									Kartagener_syndrome				7	45					0	0	0.001984	0	0
GPNMB	10457	broad.mit.edu	37	7	23307539	23307539	+	Silent	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:23307539A>G	uc003swc.2	+	8	1349	c.1188A>G	c.(1186-1188)ACA>ACG	p.T396T	GPNMB_uc003swb.2_Silent_p.T384T|GPNMB_uc011jyy.1_Silent_p.T338T|GPNMB_uc011jyz.1_Silent_p.T285T	NM_001005340	NP_001005340	Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb isoform a	396	Extracellular (Potential).				negative regulation of cell proliferation	melanosome				ovary(3)|breast(2)	5			GBM - Glioblastoma multiforme(13;0.154)			TCCAGATGACAGACGTCCTGA	0.443													3	106					0	0	0.004672	0	0
BMPER	168667	broad.mit.edu	37	7	34009962	34009962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:34009962G>A	uc011kap.1	+	5	538	c.424G>A	c.(424-426)GGG>AGG	p.G142R		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	142	VWFC 2.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						CACAGAGTCTGGGGTGCGCTG	0.493													7	46					0	0	0.003080	0	0
SEPT14	346288	broad.mit.edu	37	7	55874819	55874819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:55874819C>T	uc003tqz.2	-	8	1067	c.950G>A	c.(949-951)GGC>GAC	p.G317D		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	317					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ATCTGTAAAGCCCATTTTCTG	0.383													9	72					0	0	0.004482	0	0
NCRNA00174	285908	broad.mit.edu	37	7	65842497	65842497	+	RNA	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:65842497G>A	uc003tux.2	-	5		c.2958C>T				NR_026873				Homo sapiens cDNA FLJ33894 fis, clone CTONG2007776, weakly similar to SYNAPSIN I.												0						CGGCCCCCATGGGCCACTGTG	0.647													6	20					0	0	0.001168	0	0
WBSCR17	64409	broad.mit.edu	37	7	70881033	70881033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:70881033G>A	uc003tvy.2	+	4	748	c.748G>A	c.(748-750)GAA>AAA	p.E250K	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	250	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TGCCCACGTGGAATTCACCGC	0.567													8	43					0	0	0.003080	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86542321	86542321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:86542321G>A	uc011kha.1	-	14	2116	c.1931C>T	c.(1930-1932)TCC>TTC	p.S644F	KIAA1324L_uc003uif.1_Missense_Mutation_p.S404F|KIAA1324L_uc011kgz.1_Missense_Mutation_p.S530F|KIAA1324L_uc003uie.2_Missense_Mutation_p.S477F	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	644	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					CTGATGTATGGACAGGTAGGT	0.502													8	12					0	0	0.003080	0	0
TRRAP	8295	broad.mit.edu	37	7	98567904	98567904	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:98567904C>G	uc003upp.2	+	51	7870	c.7661C>G	c.(7660-7662)TCC>TGC	p.S2554C	TRRAP_uc011kis.1_Missense_Mutation_p.S2536C|TRRAP_uc003upr.2_Missense_Mutation_p.S2253C	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2554					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AACAGCGAGTCCAAAGAGGAG	0.637													3	80					0	0	0.004672	0	0
ARPC1A	10552	broad.mit.edu	37	7	98941935	98941935	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:98941935G>A	uc003upx.1	+	4	336	c.189G>A	c.(187-189)AAG>AAA	p.K63K	ARPC1A_uc010lfu.1_RNA|ARPC1A_uc003upy.1_Silent_p.K49K|ARPC1A_uc011kit.1_RNA	NM_006409	NP_006400	Q92747	ARC1A_HUMAN	actin related protein 2/3 complex subunit 1A	63	WD 2.				actin cytoskeleton organization|regulation of actin filament polymerization	actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	all_cancers(62;4.46e-09)|all_epithelial(64;3.44e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0258)		STAD - Stomach adenocarcinoma(171;0.215)			GGGCTCCCAAGAGCGACCGCA	0.532													4	35					0	0	0.000248	0	0
FBXO24	26261	broad.mit.edu	37	7	100198504	100198504	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:100198504C>T	uc003uvm.1	+	10	2018	c.1725C>T	c.(1723-1725)CCC>CCT	p.P575P	FBXO24_uc003uvn.1_Silent_p.P213P|uc011kjy.1_Intron|FBXO24_uc011kjz.1_Silent_p.P613P|FBXO24_uc011kka.1_Silent_p.P563P|PCOLCE_uc011kkb.1_5'Flank|PCOLCE_uc003uvo.2_5'Flank|PCOLCE_uc010lhb.1_5'Flank	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	575						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GTGTAGGGCCCCCAGCCCCTG	0.632													23	76					0	0	0.002780	0	0
MUC17	140453	broad.mit.edu	37	7	100674976	100674976	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:100674976G>A	uc003uxp.1	+	3	332	c.279G>A	c.(277-279)TCG>TCA	p.S93S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	93	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGATGACCTCGATTGAGTCCA	0.488													17	48					0	0	0.004007	0	0
C7orf60	154743	broad.mit.edu	37	7	112462260	112462260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:112462260G>A	uc003vgo.1	-	5	884	c.757C>T	c.(757-759)CCT>TCT	p.P253S	C7orf60_uc011kms.1_Missense_Mutation_p.P279S	NM_152556	NP_689769	Q1RMZ1	CG060_HUMAN	hypothetical protein LOC154743	253										ovary(2)|skin(1)	3						CGCTGGTAAGGAGATGGAAAA	0.403													4	15					0	0	0.000248	0	0
HYAL4	23553	broad.mit.edu	37	7	123517096	123517096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:123517096G>A	uc003vlc.2	+	5	1971	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	445	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						TGAAGGAGCTGATTGCAGAGA	0.453													8	38					0	0	0.004482	0	0
PAX4	5078	broad.mit.edu	37	7	127253886	127253886	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:127253886G>A	uc010lld.1	-	4	668	c.462C>T	c.(460-462)CCC>CCT	p.P154P	PAX4_uc003vmf.2_Silent_p.P152P|PAX4_uc003vmg.1_Silent_p.P154P|PAX4_uc003vmh.2_Silent_p.P152P	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	162					cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGTACCCCGGGGAGTCTCAG	0.572													23	62					0	0	0.002780	0	0
COPG2	26958	broad.mit.edu	37	7	130295862	130295862	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:130295862G>A	uc003vqh.1	-	9	789	c.699C>T	c.(697-699)ATC>ATT	p.I233I		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	233					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					TGGCAATTCGGATCAGCATGC	0.383													47	178					0	0	0.003610	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138432301	138432301	+	Missense_Mutation	SNP	T	G	G	rs140896827		TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:138432301T>G	uc003vuf.2	-	12	1427	c.1189A>C	c.(1189-1191)ACC>CCC	p.T397P	ATP6V0A4_uc003vug.2_Missense_Mutation_p.T397P|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.T397P	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	397	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GTGATGATGGTGTAGGGGGCT	0.577													6	36					0	0	0.001168	0	0
TRPV5	56302	broad.mit.edu	37	7	142609822	142609822	+	Silent	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:142609822G>C	uc003wby.1	-	13	1878	c.1614C>G	c.(1612-1614)CTC>CTG	p.L538L		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	538					protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CAATAACAGTGAGAAAAAGCT	0.493													25	92					0	0	0.004656	0	0
OR2A25	392138	broad.mit.edu	37	7	143771756	143771756	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:143771756G>A	uc011ktx.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TGACTTCCTGGATTTTAGGAG	0.458													25	109					0	0	0.002780	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146825856	146825856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:146825856G>A	uc003weu.1	+	7	1527	c.1011G>A	c.(1009-1011)ATG>ATA	p.M337I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	337	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAGGCTGCATGGAAAGCATCA	0.413										HNSCC(39;0.1)			4	36					0	0	0.000602	0	0
ZNF862	643641	broad.mit.edu	37	7	149557631	149557631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:149557631G>A	uc010lpn.2	+	7	1574	c.1382G>A	c.(1381-1383)AGG>AAG	p.R461K	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	461	TTF-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						AGGACATACAGGCCCCGTTCC	0.537													29	194					0	0	0.002445	0	0
ABP1	26	broad.mit.edu	37	7	150556110	150556110	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:150556110G>A	uc003why.1	+	4	6048	c.1830G>A	c.(1828-1830)CAG>CAA	p.Q610Q	ABP1_uc003whz.1_Silent_p.Q610Q|ABP1_uc003wia.1_Silent_p.Q610Q	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	610					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CAGGCTGGCAGGAGGAGCAGG	0.582													4	17					0	0	0.000248	0	0
SHH	6469	broad.mit.edu	37	7	155604658	155604658	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr7:155604658C>T	uc003wmk.1	-	1	310	c.159G>A	c.(157-159)GAG>GAA	p.E53E	SHH_uc003wmh.1_5'Flank|SHH_uc003wmi.1_5'Flank|SHH_uc003wmj.1_5'Flank	NM_000193	NP_000184	Q15465	SHH_HUMAN	sonic hedgehog preproprotein	53			E -> K (in HPE3).		androgen metabolic process|axon guidance|branching involved in ureteric bud morphogenesis|CD4-positive or CD8-positive, alpha-beta T cell lineage commitment|embryonic digit morphogenesis|hindbrain development|intein-mediated protein splicing|lymphoid progenitor cell differentiation|metanephric mesenchymal cell proliferation involved in metanephros development|midbrain development|negative regulation of cell migration|negative regulation of kidney smooth muscle cell differentiation|negative regulation of ureter smooth muscle cell differentiation|negative thymic T cell selection|neural crest cell migration|neuroblast proliferation|patterning of blood vessels|positive regulation of alpha-beta T cell differentiation|positive regulation of immature T cell proliferation in thymus|positive regulation of kidney smooth muscle cell differentiation|positive regulation of mesenchymal cell proliferation involved in ureter development|positive regulation of T cell differentiation in thymus|positive regulation of ureter smooth muscle cell differentiation|positive thymic T cell selection|proteolysis|sclerotome development|stem cell development|thymus development|vasculogenesis|ventral midline development	cell surface|extracellular space|membrane raft|plasma membrane	calcium ion binding|laminin-1 binding|peptidase activity|signal transducer activity|zinc ion binding			central_nervous_system(3)|lung(1)	4	all_neural(206;0.101)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00882)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTAGGGTCTTCTCGGCCACAT	0.557													107	337					0	0	0.003610	0	0
MYOM2	9172	broad.mit.edu	37	8	2092691	2092691	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:2092691T>C	uc003wpx.3	+	37	4322	c.4184T>C	c.(4183-4185)GTG>GCG	p.V1395A	MYOM2_uc011kwi.1_Missense_Mutation_p.V820A	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1395	Ig-like C2-type 5.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TCGGTGAAGGTGGAGCAGGCC	0.532													16	109					0	0	0.006122	0	0
BLK	640	broad.mit.edu	37	8	11407733	11407733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:11407733C>T	uc003wty.2	+	6	1015	c.434C>T	c.(433-435)GCC>GTC	p.A145V	BLK_uc003wtz.2_Missense_Mutation_p.A74V	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	145	SH2.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		ATCAACAAGGCCGGCTCCTTT	0.557													13	152					0	0	0.004990	0	0
BLK	640	broad.mit.edu	37	8	11420487	11420488	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:11420487_11420488GG>AA	uc003wty.2	+	12	1762	c.1181_splice	c.e12-1	p.G394_splice	BLK_uc003wtz.2_Splice_Site_p.G323_splice|BLK_uc003wua.2_Splice_Site_p.G230_splice	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase						intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TTTTCCCACAGGGGCCAAGTTC	0.609													8	78					0	0	0.004672	0	0
ADAM18	8749	broad.mit.edu	37	8	39564371	39564371	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:39564371C>T	uc003xni.2	+	18	1965	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.F631F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	655	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATTGTAAATTCCAGTTTGGTT	0.338													21	69					0	0	0.003954	0	0
ADAM18	8749	broad.mit.edu	37	8	39587442	39587442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:39587442G>A	uc003xni.2	+	20	2203	c.2203G>A	c.(2203-2205)GAT>AAT	p.D735N	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.D711N	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	735	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATCAGAAAGCGATGACGTGGG	0.328													25	100					0	0	0.001786	0	0
ANK1	286	broad.mit.edu	37	8	41547811	41547811	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:41547811C>T	uc003xok.2	-	33	4122	c.4038G>A	c.(4036-4038)GCG>GCA	p.A1346A	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.A662A|ANK1_uc003xoi.2_Silent_p.A1346A|ANK1_uc003xoj.2_Silent_p.A1346A|ANK1_uc003xol.2_Silent_p.A1346A|ANK1_uc003xom.2_Silent_p.A1387A	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1346					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CGTACTTCATCGCCTTGCGCA	0.597													14	119					0	0	0.001855	0	0
ST18	9705	broad.mit.edu	37	8	53085133	53085133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:53085133C>T	uc003xqz.2	-	5	444	c.288G>A	c.(286-288)ATG>ATA	p.M96I	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.M61I|ST18_uc011lds.1_Missense_Mutation_p.M1I|ST18_uc003xra.2_Missense_Mutation_p.M96I|ST18_uc003xrb.2_Missense_Mutation_p.M96I	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	96						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TAGGTTTTATCATGATTTCCT	0.299													4	26					0	0	0.000602	0	0
PREX2	80243	broad.mit.edu	37	8	69033271	69033271	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:69033271G>A	uc003xxv.1	+	30	3738	c.3711G>A	c.(3709-3711)AGG>AGA	p.R1237R		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1237					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGAACATCAGGAAATTTGTTG	0.403													3	23					0	0	0.004672	0	0
KCNB2	9312	broad.mit.edu	37	8	73480025	73480026	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:73480025_73480026CC>TT	uc003xzb.2	+	2	644_645	c.56_57CC>TT	c.(55-57)TCC>TTT	p.S19F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	19	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCGACACTTTCCCTTCCTCCAG	0.52													8	30					0	0	0.004672	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766838	77766838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:77766838C>T	uc003yav.2	+	10	7933	c.7546C>T	c.(7546-7548)CCT>TCT	p.P2516S	ZFHX4_uc003yau.1_Missense_Mutation_p.P2561S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2516S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2516						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCAAATGCCCCCTCAGGCCAG	0.493										HNSCC(33;0.089)			7	24					0	0	0.001984	0	0
CCNE2	9134	broad.mit.edu	37	8	95897774	95897774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:95897774G>A	uc003yhc.2	-	8	722	c.613C>T	c.(613-615)CCT>TCT	p.P205S	CCNE2_uc003yhd.2_Missense_Mutation_p.P205S	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	205					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TGGAGTTTAGGAGCATAGATT	0.234													75	231					0	0	0.003610	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813462	106813462	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:106813462C>T	uc003ymd.2	+	8	1175	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	ZFPM2_uc011lhs.1_Silent_p.L115L|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	384	C2H2-type 3.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ACCAGGAGCTCCATGTCCCTA	0.507													8	57					0	0	0.003080	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813481	106813481	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:106813481C>A	uc003ymd.2	+	8	1194	c.1171C>A	c.(1171-1173)CTT>ATT	p.L391I	ZFPM2_uc011lhs.1_Missense_Mutation_p.L122I|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	391					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TAGCGGCAAACTTCCCAGAGA	0.517													7	41					0.00198382	0.00271594	0.001984	1	0
OXR1	55074	broad.mit.edu	37	8	107705067	107705067	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:107705067T>A	uc011lht.1	+	6	739	c.640T>A	c.(640-642)TTT>ATT	p.F214I	OXR1_uc003ymf.2_Missense_Mutation_p.F213I|OXR1_uc011lhu.1_Missense_Mutation_p.F206I|OXR1_uc010mcg.2_Intron|OXR1_uc003ymg.1_Missense_Mutation_p.F146I|OXR1_uc003ymi.1_Missense_Mutation_p.F125I	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	214	GRAM.				cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TACTGAGAAATTTCTTAAAAT	0.358													10	30					0	0	0.006214	0	0
FAM83A	84985	broad.mit.edu	37	8	124206263	124206263	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:124206263G>A	uc003ypv.2	+	4	2663	c.649_splice	c.e4-1	p.N217_splice	FAM83A_uc003ypw.2_Splice_Site_p.N217_splice|FAM83A_uc003ypy.2_Splice_Site_p.N161_splice|FAM83A_uc003ypx.2_Splice_Site_p.N217_splice|FAM83A_uc003ypz.2_Splice_Site_p.N217_splice	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a											ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CCCTCCAACAGAACATTTCCA	0.363													4	32					0	0	0.000602	0	0
KCNQ3	3786	broad.mit.edu	37	8	133182620	133182620	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:133182620C>T	uc003ytj.2	-	8	1421	c.1196G>A	c.(1195-1197)TGG>TAG	p.W399*	KCNQ3_uc010mdt.2_Nonsense_Mutation_p.W399*	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	399					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ATAAAATCTCCATGTCGCCAC	0.532													5	32					0	0	0.001168	0	0
PHF20L1	51105	broad.mit.edu	37	8	133858053	133858053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:133858053G>A	uc003ytt.2	+	21	3264	c.2939G>A	c.(2938-2940)GGG>GAG	p.G980E	PHF20L1_uc011lja.1_Missense_Mutation_p.G954E	NM_016018	NP_057102	A8MW92	P20L1_HUMAN	PHD finger protein 20-like 1 isoform 1	980							nucleic acid binding|zinc ion binding			ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			GATTTCACAGGGGAGTTGGAG	0.408													4	25					0	0	0.001168	0	0
SLC45A4	57210	broad.mit.edu	37	8	142225904	142225904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr8:142225904G>A	uc003ywd.1	-	6	2050	c.1742C>T	c.(1741-1743)TCC>TTC	p.S581F	SLC45A4_uc003ywc.1_Missense_Mutation_p.S581F|SLC45A4_uc010meq.1_Missense_Mutation_p.S579F	NM_001080431	NP_001073900	Q5BKX6	S45A4_HUMAN	solute carrier family 45, member 4	632	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	all_cancers(97;1.52e-15)|all_epithelial(106;2.92e-14)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGGGCAGTAGGAGATGCTCAT	0.607													10	118					0	0	0.006214	0	0
TAF1L	138474	broad.mit.edu	37	9	32631080	32631080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:32631080G>A	uc003zrg.1	-	1	4588	c.4498C>T	c.(4498-4500)CTT>TTT	p.L1500F	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1500					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTCTCTTTAAGTTTTTCATCA	0.408													8	43					0	0	0.008291	0	0
TRPM6	140803	broad.mit.edu	37	9	77448962	77448962	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:77448962G>A	uc004ajl.1	-	6	859	c.621C>T	c.(619-621)ATC>ATT	p.I207I	TRPM6_uc004ajk.1_Silent_p.I202I|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.I207I|TRPM6_uc010mpd.1_Silent_p.I207I|TRPM6_uc010mpe.1_Silent_p.I207I|TRPM6_uc004ajn.1_Silent_p.I207I	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	207	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CCCAAGGAGGGATTCCAACTG	0.418													6	40					0	0	0.001984	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320203	79320203	+	Silent	SNP	C	T	T	rs150789659	by1000genomes	TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:79320203C>T	uc010mpk.2	-	8	7111	c.6987G>A	c.(6985-6987)CCG>CCA	p.P2329P	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2329					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTGGCGTTTCCGGATGGCCTT	0.478													9	23					0	0	0.004482	0	0
C9orf79	286234	broad.mit.edu	37	9	90503330	90503330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:90503330G>A	uc004app.3	+	4	3963	c.3928G>A	c.(3928-3930)GAC>AAC	p.D1310N		NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	1310						integral to membrane				ovary(3)	3						GCAGTTTATGGACTGCATGGC	0.577													6	29					0	0	0.001984	0	0
TRIM14	9830	broad.mit.edu	37	9	100862240	100862240	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:100862240C>T	uc004ayd.2	-	3	528	c.510G>A	c.(508-510)CAG>CAA	p.Q170Q	TRIM14_uc004ayf.1_Silent_p.Q77Q|TRIM14_uc004ayg.1_Silent_p.Q170Q|TRIM14_uc004ayh.1_Silent_p.Q170Q|TRIM14_uc004ayi.1_Silent_p.Q170Q|TRIM14_uc004ayj.1_Silent_p.Q77Q	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	170						cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GATCGGGCTCCTGGCTGATAC	0.532													11	50					0	0	0.000978	0	0
GAPVD1	26130	broad.mit.edu	37	9	128083743	128083743	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:128083743A>C	uc010mwx.2	+	10	1960	c.1634A>C	c.(1633-1635)CAA>CCA	p.Q545P	GAPVD1_uc011lzs.1_Missense_Mutation_p.Q545P|GAPVD1_uc004bpp.2_Missense_Mutation_p.Q545P|GAPVD1_uc004bpq.2_Missense_Mutation_p.Q545P|GAPVD1_uc004bpr.2_Missense_Mutation_p.Q545P|GAPVD1_uc004bps.2_Missense_Mutation_p.Q545P|GAPVD1_uc010mwy.1_Missense_Mutation_p.Q404P	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	545					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GATGGAGGACAAGGAGATGTC	0.383													4	51					0	0	0.000248	0	0
FNBP1	23048	broad.mit.edu	37	9	132678258	132678258	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:132678258A>C	uc004byw.1	-	11	1391	c.1172T>G	c.(1171-1173)CTT>CGT	p.L391R	FNBP1_uc011mbv.1_Missense_Mutation_p.L381R|FNBP1_uc011mbw.1_Intron|FNBP1_uc004bza.2_Intron|FNBP1_uc004byz.1_Missense_Mutation_p.L362R|FNBP1_uc011mbu.1_Missense_Mutation_p.L19R|FNBP1_uc004byx.1_Intron|FNBP1_uc004byy.1_Intron	NM_015033	NP_055848	Q96RU3	FNBP1_HUMAN	formin binding protein 1	391	Required for self-association and induction of membrane tubulation.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|lysosome|plasma membrane	identical protein binding|lipid binding				0		Ovarian(14;0.000536)		GBM - Glioblastoma multiforme(294;0.0378)		CTTGAGAGAAAGCTTCATGTA	0.343			T	MLL	AML								3	16					0	0	0.004672	0	0
VAV2	7410	broad.mit.edu	37	9	136645046	136645046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:136645046C>T	uc004ces.2	-	21	1802	c.1756G>A	c.(1756-1758)GGA>AGA	p.G586R	VAV2_uc004cer.2_Missense_Mutation_p.G576R|VAV2_uc004cet.1_Missense_Mutation_p.G125R	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	586	SH3 1.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		TCACCTGGTCCCGCTCCGGAG	0.622													12	53					0	0	0.002450	0	0
WWC3	55841	broad.mit.edu	37	X	10085396	10085396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:10085396C>T	uc004csx.3	+	11	1495	c.1297C>T	c.(1297-1299)CCC>TCC	p.P433S	WWC3_uc010nds.2_Missense_Mutation_p.P97S|WWC3_uc010ndt.2_RNA	NM_015691	NP_056506	Q9ULE0	WWC3_HUMAN	WWC family member 3	433	Ser-rich.									ovary(4)	4						GCCCCCAGGCCCCTCGGGCTT	0.662													20	84					0	0	0.008871	0	0
EGFL6	25975	broad.mit.edu	37	X	13645196	13645196	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:13645196T>G	uc004cvi.2	+	11	1592	c.1352T>G	c.(1351-1353)CTT>CGT	p.L451R	EGFL6_uc004cvj.2_Missense_Mutation_p.L452R	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	451	MAM.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						CGATTGAAACTTCTCCTACCT	0.453													12	92					0	0	0.000978	0	0
PHKA2	5256	broad.mit.edu	37	X	18924613	18924613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:18924613C>T	uc004cyv.3	-	25	3236	c.2806G>A	c.(2806-2808)GGA>AGA	p.G936R	PHKA2_uc004cyu.3_Missense_Mutation_p.G234R|PHKA2_uc010nfe.1_5'Flank|PHKA2_uc010nff.1_5'Flank	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	936					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					GGCATCTCACCTGAGCAGTTC	0.627													15	95					0	0	0.004007	0	0
POLA1	5422	broad.mit.edu	37	X	24859900	24859900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:24859900C>T	uc004dbl.2	+	33	3873	c.3850C>T	c.(3850-3852)CCT>TCT	p.P1284S		NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	1284	Potential.				cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	ATGTCCATGCCCTACATGTGG	0.388													4	18					0	0	0.000248	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820805	35820805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:35820805G>A	uc010ngt.1	+	2	771	c.492G>A	c.(490-492)ATG>ATA	p.M164I		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	164	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						ACCTAGAGATGATATTTGGCC	0.468													6	61					0	0	0.001168	0	0
BCOR	54880	broad.mit.edu	37	X	39932522	39932522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:39932522G>A	uc004den.3	-	4	2369	c.2077C>T	c.(2077-2079)CCT>TCT	p.P693S	BCOR_uc004dep.3_Missense_Mutation_p.P693S|BCOR_uc004deo.3_Missense_Mutation_p.P693S|BCOR_uc004dem.3_Missense_Mutation_p.P693S|BCOR_uc004deq.3_Missense_Mutation_p.P693S	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	693	Pro-rich.				heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						AGGTGCCCAGGAAACAGACTG	0.582													6	42					0	0	0.001168	0	0
MAOB	4129	broad.mit.edu	37	X	43656393	43656393	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:43656393G>A	uc004dfz.3	-	6	773	c.597C>T	c.(595-597)ATC>ATT	p.I199I	MAOB_uc011mkx.1_Silent_p.I183I|MAOB_uc011mky.1_Silent_p.I183I	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	199	Cytoplasmic.			I->F: Alters specificity towards synthetic inhibitors.	xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	TTGTTGTCGAGATGATTCTTG	0.463													4	20					0	0	0.000248	0	0
RBM10	8241	broad.mit.edu	37	X	47035967	47035967	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:47035967G>C	uc004dhf.2	+	7	1024	c.645G>C	c.(643-645)GAG>GAC	p.E215D	RBM10_uc004dhe.1_3'UTR|RBM10_uc004dhg.2_Missense_Mutation_p.E138D|RBM10_uc004dhh.2_Missense_Mutation_p.E215D|RBM10_uc010nhq.2_Missense_Mutation_p.E138D|RBM10_uc004dhi.2_Missense_Mutation_p.E280D	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	215	RanBP2-type.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						AGATCAATGAGGACTGGCTGT	0.507													17	82					0	0	0.006122	0	0
RBM10	8241	broad.mit.edu	37	X	47039321	47039321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:47039321C>T	uc004dhf.2	+	10	1323	c.944C>T	c.(943-945)TCC>TTC	p.S315F	RBM10_uc004dhg.2_Missense_Mutation_p.S238F|RBM10_uc004dhh.2_Missense_Mutation_p.S315F|RBM10_uc010nhq.2_Missense_Mutation_p.S238F|RBM10_uc004dhi.2_Missense_Mutation_p.S380F	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	315	RRM 2.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						ACCATGGATTCCATCCTGGGG	0.602													9	24					0	0	0.004482	0	0
GRIPAP1	56850	broad.mit.edu	37	X	48840277	48840277	+	Silent	SNP	T	C	C			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:48840277T>C	uc004dly.1	-	15	1217	c.1182A>G	c.(1180-1182)TCA>TCG	p.S394S	GRIPAP1_uc004dlz.2_Silent_p.S284S|GRIPAP1_uc004dma.2_Silent_p.S341S	NM_020137	NP_064522	Q4V328	GRAP1_HUMAN	GRIP1 associated protein 1 isoform 1	394	Potential.					early endosome				breast(2)|kidney(1)	3						TGGCCCGTAATGACTCCTAAT	0.507													11	101					0	0	0.008291	0	0
MAGED1	9500	broad.mit.edu	37	X	51643356	51643356	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:51643356G>A	uc004dpm.2	+	11	2018	c.1923G>A	c.(1921-1923)GAG>GAA	p.E641E	MAGED1_uc004dpn.2_Silent_p.E697E|MAGED1_uc004dpo.2_Silent_p.E641E	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	641	MAGE.				apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					CCTACCATGAGACTAGCAAGA	0.498										Multiple Myeloma(10;0.10)			7	27					0	0	0.001984	0	0
TAF1	6872	broad.mit.edu	37	X	70598119	70598119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:70598119C>T	uc004dzu.3	+	7	1016	c.965C>T	c.(964-966)TCC>TTC	p.S322F	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.S343F	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	322	Protein kinase 1.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				TCCAAATTTTCCCAATCAACT	0.468													4	35					0	0	0.000248	0	0
NHSL2	340527	broad.mit.edu	37	X	71360043	71360043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:71360043C>T	uc011mqa.1	+	6	2645	c.2645C>T	c.(2644-2646)CCA>CTA	p.P882L	NHSL2_uc004eak.1_Missense_Mutation_p.P516L|NHSL2_uc010nli.2_Missense_Mutation_p.P651L	NM_001013627	NP_001013649	Q5HYW2	NHSL2_HUMAN	NHS-like 2	882											0	Renal(35;0.156)					CGGAGGCCTCCAAGCTTGGTC	0.552													4	39					0	0	0.000248	0	0
BRWD3	254065	broad.mit.edu	37	X	79985494	79985494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:79985494C>T	uc004edt.2	-	13	1416	c.1153G>A	c.(1153-1155)GAT>AAT	p.D385N	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.D214N|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_Missense_Mutation_p.D55N|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_Missense_Mutation_p.D55N|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_Missense_Mutation_p.D55N|BRWD3_uc004eea.2_Missense_Mutation_p.D55N|BRWD3_uc004eeb.2_5'UTR	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	385	WD 6.									ovary(4)	4						GCCGTTCCATCTCGACTTCCA	0.303													3	27					0	0	0.004672	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004256	102004256	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:102004256C>T	uc010nog.2	+	4	904	c.333C>T	c.(331-333)TTC>TTT	p.F111F	BHLHB9_uc011mrq.1_Silent_p.F111F|BHLHB9_uc011mrr.1_Silent_p.F111F|BHLHB9_uc011mrs.1_Silent_p.F111F|BHLHB9_uc011mrt.1_Silent_p.F111F|BHLHB9_uc004ejo.2_Silent_p.F111F|BHLHB9_uc011mru.1_Silent_p.F111F|BHLHB9_uc011mrv.1_Silent_p.F111F	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	111						cytoplasm|nucleus	binding			ovary(2)	2						ATGCCTGGTTCTGGGCTGGGG	0.493													18	85					0	0	0.006122	0	0
NRK	203447	broad.mit.edu	37	X	105168906	105168906	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:105168906C>T	uc004emd.2	+	19	3498	c.3195C>T	c.(3193-3195)GTC>GTT	p.V1065V	NRK_uc010npc.1_Silent_p.V733V	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1065							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GTAAGGGAGTCGTTCGAACCA	0.507										HNSCC(51;0.14)			3	12					0	0	0.004672	0	0
COL4A6	1288	broad.mit.edu	37	X	107554042	107554042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:107554042C>T	uc004enw.3	-	3	186	c.83G>A	c.(82-84)GGA>GAA	p.G28E	COL4A6_uc004env.3_Missense_Mutation_p.G27E|COL4A6_uc011msn.1_Missense_Mutation_p.G27E|COL4A6_uc010npk.2_Missense_Mutation_p.G27E|COL4A6_uc004enx.2_RNA|COL4A6_uc004eny.2_RNA	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	28	7S domain.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						ACATGGCTTTCCATAAGACTT	0.413									Alport_syndrome_with_Diffuse_Leiomyomatosis				6	57					0	0	0.003080	0	0
ODZ1	10178	broad.mit.edu	37	X	123654524	123654524	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:123654524C>T	uc004euj.2	-	18	3208	c.3144G>A	c.(3142-3144)ACG>ACA	p.T1048T	ODZ1_uc011muj.1_Silent_p.T1047T|ODZ1_uc010nqy.2_Silent_p.T1048T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1048	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACAGGAATCGTTGAATGTG	0.493													9	20					0	0	0.008291	0	0
USP26	83844	broad.mit.edu	37	X	132161158	132161158	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:132161158A>G	uc010nrm.1	-	6	1561	c.1091T>C	c.(1090-1092)CTT>CCT	p.L364P	USP26_uc011mvf.1_Missense_Mutation_p.L364P	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	364			L -> F.		protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity	p.L364P(1)		lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GGCCTTTTTAAGATTCAAGAG	0.373													3	26					0	0	0.004672	0	0
PRRG3	79057	broad.mit.edu	37	X	150868496	150868496	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:150868496G>A	uc004few.1	+	3	426	c.36G>A	c.(34-36)TCG>TCA	p.S12S		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	12						extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					ATGCCCATTCGGTCCTGAAAC	0.607													11	73					0	0	0.008291	0	0
GABRE	2564	broad.mit.edu	37	X	151123984	151123984	+	Silent	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:151123984G>A	uc004ffi.2	-	8	1047	c.993C>T	c.(991-993)TTC>TTT	p.F331F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	331					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGACACGCGGGAAATTCTTAC	0.507													11	61					0	0	0.002450	0	0
MAGEA5	4104	broad.mit.edu	37	X	151283948	151283949	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:151283948_151283949GC>AA	uc004ffj.2	-	3	269_270	c.64_65GC>TT	c.(64-66)GCC>TTC	p.A22F		NM_021049	NP_066387	P43359	MAGA5_HUMAN	melanoma antigen family A, 5	22	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGCCCAGGGCCTCTTCTTGG	0.629													8	62					0	0	0.004672	0	0
PNMA5	114824	broad.mit.edu	37	X	152159672	152159672	+	Silent	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:152159672C>T	uc010ntw.2	-	3	810	c.471G>A	c.(469-471)AGG>AGA	p.R157R	PNMA5_uc004fha.3_Silent_p.R157R|PNMA5_uc010ntx.2_Silent_p.R157R|PNMA5_uc004fgy.3_Silent_p.R157R	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	157					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTCAGTTTCCTGTACCACA	0.418													29	249					0	0	0.006320	0	0
HCFC1	3054	broad.mit.edu	37	X	153219122	153219122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:153219122G>A	uc004fjp.2	-	18	4961	c.4433C>T	c.(4432-4434)TCC>TTC	p.S1478F		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1478					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CGTCAGTGTGGAGGACACGGT	0.672													12	79					0	0	0.001368	0	0
PLXNA3	55558	broad.mit.edu	37	X	153697519	153697519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:153697519C>T	uc004flm.2	+	26	4728	c.4555C>T	c.(4555-4557)CCG>TCG	p.P1519S		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1519	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CAAGGGCATTCCGTACTCCCA	0.602													22	116					0	0	0.001882	0	0
SEC24C	9632	broad.mit.edu	37	10	75506612	75506612	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr10:75506612delC	uc001juw.2	+	3	201	c.22delC	c.(22-24)CCAfs	p.P8fs	SEC24C_uc010qkn.1_Intron|SEC24C_uc009xrj.1_5'UTR|SEC24C_uc001jux.2_Frame_Shift_Del_p.P8fs|SEC24C_uc010qko.1_5'UTR|SEC24C_uc010qkp.1_Intron|SEC24C_uc010qkq.1_Intron	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	8					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					CCAGTCAGTTCCACCTGTGCC	0.498													16	87	---	---	---	---					
NUP98	4928	broad.mit.edu	37	11	3704526	3704527	+	In_Frame_Ins	INS	-	TGC	TGC			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr11:3704526_3704527insTGC	uc001lyh.2	-	30	5112_5113	c.4821_4822insGCA	c.(4819-4824)insGCA	p.1607_1608insA	NUP98_uc001lyi.2_In_Frame_Ins_p.1533_1534insA|NUP98_uc001lyg.2_In_Frame_Ins_p.572_573insA	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1624_1625					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		GATTCCATGTGTGCTCGCACAG	0.515			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								9	67	---	---	---	---					
FAM155A	728215	broad.mit.edu	37	13	108518687	108518689	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr13:108518687_108518689delCTG	uc001vql.2	-	1	772_774	c.256_258delCAG	c.(256-258)CAGdel	p.Q86del		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	86	Poly-Gln.					integral to membrane	binding			skin(1)	1						gccgctgcctctgctgctgctgc	0.404													10	82	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216400	149216402	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr5:149216400_149216402delCAG	uc003lrc.2	+	8	2424_2426	c.2382_2384delCAG	c.(2380-2385)GACAGC>GAC	p.S799del	PPARGC1B_uc003lrb.1_In_Frame_Del_p.S799del|PPARGC1B_uc003lrd.2_In_Frame_Del_p.S760del|PPARGC1B_uc003lrf.2_In_Frame_Del_p.S778del|PPARGC1B_uc003lre.1_In_Frame_Del_p.S778del	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	799	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCTTTGAAGACAGCAGCAGCAGC	0.453													9	169	---	---	---	---					
PRDM12	59335	broad.mit.edu	37	9	133543701	133543702	+	Splice_Site	DEL	GT	-	-			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chr9:133543701_133543702delGT	uc004bzt.1	+	3	630	c.570_splice	c.e3+1	p.E190_splice		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		GGCCATTGAGGTGTGTGTGTGT	0.594													7	89	---	---	---	---					
SOX3	6658	broad.mit.edu	37	X	139586119	139586119	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GL-06A-11D-A196-08	TCGA-EE-A2GL-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b649bf67-c74a-4bb9-924f-e3a6f19ba77e	0f475c0a-f244-42ac-b00e-e70f0b5e35a5	g.chrX:139586119delG	uc004fbd.1	-	1	1107	c.1107delC	c.(1105-1107)CCCfs	p.P369fs		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	369					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					CCGAGCCCATGGGGCCCAGGC	0.393													8	34	---	---	---	---					
